HHsearch alignment for GI: 254780516 and conserved domain: PRK03522
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed.
Probab=97.75 E-value=2.8e-05 Score=46.90 Aligned_cols=72 Identities=19% Similarity=0.266 Sum_probs=51.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCC-----C-CCCCEEEEEECCCCCCCEEEEECCCC
Q ss_conf 69641079478899998722208956999980695551122200123-----3-23211589753657887199986899
Q gi|254780516|r 3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-----T-LIFGDIAKIKTQDIPDHDVLLAGFPC 76 (83)
Q Consensus 3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~-----~-~~~~DI~~~~~~~~~~~D~l~gG~PC 76 (83)
T Consensus 236 ~vlDlycG~G~~sl~lA~-----~~~~V~gvE~~~~av~~A~~na~~ngi~nv~f~~~d~~~~~~~~~~~~d~vvvDPPR 310 (375)
T PRK03522 236 SMWDLFCGVGGFGLHCAT-----PDMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPELVLVNPPR 310 (375)
T ss_pred EEEEECCCCCHHHHHHHH-----CCCEEEEEEECHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHCCCCCCEEEECCCC
T ss_conf 899965785388898764-----178899998459999999999998699876999737788876345689789989997
Q ss_pred CCC
Q ss_conf 754
Q gi|254780516|r 77 QPF 79 (83)
Q Consensus 77 q~f 79 (83)
T Consensus 311 ~Gl 313 (375)
T PRK03522 311 RGI 313 (375)
T ss_pred CCC
T ss_conf 775