HHsearch alignment for GI: 254780516 and conserved domain: PRK10909

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional.
Probab=98.15  E-value=1.8e-06  Score=52.95  Aligned_cols=71  Identities=20%  Similarity=0.197  Sum_probs=50.3

Q ss_pred             CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCC------CCCEEEEEECCCCCCCEEEEECCC
Q ss_conf             26964107947889999872220895699998069555112220012332------321158975365788719998689
Q gi|254780516|r    2 LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL------IFGDIAKIKTQDIPDHDVLLAGFP   75 (83)
Q Consensus         2 l~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~------~~~DI~~~~~~~~~~~D~l~gG~P   75 (83)
T Consensus        54 ~~vLDLFAGSGa--lGlEALS--RGA~~v~fVE~~~~~~~~i~~N~~~l~~~~~~ii~~da~~~L~~~~~~fDlIF~DPP  129 (198)
T PRK10909         54 ARCLDCFAGSGA--LGLEALS--RYAAGATLLEMDRAVSQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPP  129 (198)
T ss_pred             CEEEECCCCCCH--HHHHHHH--CCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHCCCCCEEEEEECCC
T ss_conf             879982777468--8999998--799789999789999999999999848886799955699986255995218998999


Q ss_pred             C
Q ss_conf             9
Q gi|254780516|r   76 C   76 (83)
Q Consensus        76 C   76 (83)
T Consensus       130 Y  130 (198)
T PRK10909        130 F  130 (198)
T ss_pred             C
T ss_conf             7