HHsearch alignment for GI: 254780516 and conserved domain: PRK10909
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional.
Probab=98.15 E-value=1.8e-06 Score=52.95 Aligned_cols=71 Identities=20% Similarity=0.197 Sum_probs=50.3
Q ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCC------CCCEEEEEECCCCCCCEEEEECCC
Q ss_conf 26964107947889999872220895699998069555112220012332------321158975365788719998689
Q gi|254780516|r 2 LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL------IFGDIAKIKTQDIPDHDVLLAGFP 75 (83)
Q Consensus 2 l~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~------~~~DI~~~~~~~~~~~D~l~gG~P 75 (83)
T Consensus 54 ~~vLDLFAGSGa--lGlEALS--RGA~~v~fVE~~~~~~~~i~~N~~~l~~~~~~ii~~da~~~L~~~~~~fDlIF~DPP 129 (198)
T PRK10909 54 ARCLDCFAGSGA--LGLEALS--RYAAGATLLEMDRAVSQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPP 129 (198)
T ss_pred CEEEECCCCCCH--HHHHHHH--CCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHCCCCCEEEEEECCC
T ss_conf 879982777468--8999998--799789999789999999999999848886799955699986255995218998999
Q ss_pred C
Q ss_conf 9
Q gi|254780516|r 76 C 76 (83)
Q Consensus 76 C 76 (83)
T Consensus 130 Y 130 (198)
T PRK10909 130 F 130 (198)
T ss_pred C
T ss_conf 7