HHsearch alignment for GI: 254780516 and conserved domain: PRK11933
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed.
Probab=96.58 E-value=0.0076 Score=34.72 Aligned_cols=76 Identities=17% Similarity=0.295 Sum_probs=54.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCCC-CCEEEEEECCCC----C-CCEEEEECCCC
Q ss_conf 69641079478899998722208956999980695551122200123323-211589753657----8-87199986899
Q gi|254780516|r 3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI-FGDIAKIKTQDI----P-DHDVLLAGFPC 76 (83)
Q Consensus 3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~~-~~DI~~~~~~~~----~-~~D~l~gG~PC 76 (83)
T Consensus 116 ~VLDlCAAPGGKtt~la~~m~~~G--~lvAnd~~~~R~~~L~~n~~r~G~~n~~vt~~d~~~~~~~~~~~FD~ILvDaPC 193 (471)
T PRK11933 116 RVLDMAAAPGSKTTQIAALMNNQG--ALVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPEMFDAILLDAPC 193 (471)
T ss_pred EEEEECCCCCHHHHHHHHHCCCCC--EEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHCCCCCCEEEECCCC
T ss_conf 899957785489999999758996--699983889999999999997199847999358667403230106679987888
Q ss_pred CCCC
Q ss_conf 7543
Q gi|254780516|r 77 QPFS 80 (83)
Q Consensus 77 q~fS 80 (83)
T Consensus 194 SG~G 197 (471)
T PRK11933 194 SGEG 197 (471)
T ss_pred CCCE
T ss_conf 8873