HHsearch alignment for GI: 254780516 and conserved domain: PRK11933

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed.
Probab=96.58  E-value=0.0076  Score=34.72  Aligned_cols=76  Identities=17%  Similarity=0.295  Sum_probs=54.1

Q ss_pred             EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCCC-CCEEEEEECCCC----C-CCEEEEECCCC
Q ss_conf             69641079478899998722208956999980695551122200123323-211589753657----8-87199986899
Q gi|254780516|r    3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI-FGDIAKIKTQDI----P-DHDVLLAGFPC   76 (83)
Q Consensus         3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~~-~~DI~~~~~~~~----~-~~D~l~gG~PC   76 (83)
T Consensus       116 ~VLDlCAAPGGKtt~la~~m~~~G--~lvAnd~~~~R~~~L~~n~~r~G~~n~~vt~~d~~~~~~~~~~~FD~ILvDaPC  193 (471)
T PRK11933        116 RVLDMAAAPGSKTTQIAALMNNQG--ALVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPEMFDAILLDAPC  193 (471)
T ss_pred             EEEEECCCCCHHHHHHHHHCCCCC--EEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHCCCCCCEEEECCCC
T ss_conf             899957785489999999758996--699983889999999999997199847999358667403230106679987888


Q ss_pred             CCCC
Q ss_conf             7543
Q gi|254780516|r   77 QPFS   80 (83)
Q Consensus        77 q~fS   80 (83)
T Consensus       194 SG~G  197 (471)
T PRK11933        194 SGEG  197 (471)
T ss_pred             CCCE
T ss_conf             8873