HHsearch alignment for GI: 254780516 and conserved domain: TIGR02085
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB; InterPro: IPR011825 This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA .; GO: 0016436 rRNA (uridine) methyltransferase activity, 0016070 RNA metabolic process.
Probab=92.52 E-value=0.11 Score=28.96 Aligned_cols=42 Identities=24% Similarity=0.461 Sum_probs=25.3
Q ss_pred EEEECCCCCHHHHHHHHHH-HCCC-CEEEEEEECCHHHHHHHHH
Q ss_conf 9641079478899998722-2089-5699998069555112220
Q gi|254780516|r 4 ITDLFCGIGGIRLDLEQTF-NHRN-VECFFSSEINPYSVKTYQA 45 (83)
Q Consensus 4 v~~LFsG~GG~~~gl~~a~-~~~~-~~~v~a~e~d~~a~~~y~~ 45 (83)
T Consensus 241 mWDLFCGVGGFgLHCAkalqekw~p~~~lTGIEI~~eAIa~A~~ 284 (386)
T TIGR02085 241 MWDLFCGVGGFGLHCAKALQEKWGPDTQLTGIEIESEAIACAKQ 284 (386)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECHHHHHHHHH
T ss_conf 32010465412789989876415897044313437789999999