HHsearch alignment for GI: 254780516 and conserved domain: cd00315
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=99.97 E-value=7e-31 Score=175.47 Aligned_cols=78 Identities=56% Similarity=0.990 Sum_probs=74.4
Q ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCCCCCEEEEEECCCC-CCCEEEEECCCCCCCC
Q ss_conf 269641079478899998722208956999980695551122200123323211589753657-8871999868997543
Q gi|254780516|r 2 LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDI-PDHDVLLAGFPCQPFS 80 (83)
Q Consensus 2 l~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~~~~DI~~~~~~~~-~~~D~l~gG~PCq~fS 80 (83)
T Consensus 1 l~v~dLFsG~GG~s~Gl~~a----G~~~~~a~e~d~~a~~t~~~N~~~~~~~~Di~~~~~~~~~~~vDll~ggpPCQ~fS 76 (275)
T cd00315 1 LRVIDLFAGIGGFRLGLEKA----GFEIVAANEIDKSAAETYEANFPNKLIEGDITKIDEKDFIPDIDLLTGGFPCQPFS 76 (275)
T ss_pred CCEEEECCCCCHHHHHHHHC----CCEEEEEEECCHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCEEEECCCCCCCC
T ss_conf 95999767807899999986----99899999689999999998879995258864465321378878898689998735
Q ss_pred CCC
Q ss_conf 689
Q gi|254780516|r 81 QAG 83 (83)
Q Consensus 81 ~aG 83 (83)
T Consensus 77 ~ag 79 (275)
T cd00315 77 IAG 79 (275)
T ss_pred CCC
T ss_conf 478