HHsearch alignment for GI: 254780516 and conserved domain: pfam00398

>pfam00398 RrnaAD Ribosomal RNA adenine dimethylase.
Probab=90.82  E-value=0.62  Score=25.11  Aligned_cols=67  Identities=18%  Similarity=0.323  Sum_probs=47.9

Q ss_pred             EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCC---C-CCCCCEEEEEECCCCCCCEEEEECCC
Q ss_conf             6964107947889999872220895699998069555112220012---3-32321158975365788719998689
Q gi|254780516|r    3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP---N-TLIFGDIAKIKTQDIPDHDVLLAGFP   75 (83)
Q Consensus         3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~---~-~~~~~DI~~~~~~~~~~~D~l~gG~P   75 (83)
T Consensus        33 ~VlEIGPG~G~LT~~L~~~-----~~~v~aiE~D~~l~~~L~~~~~~~~~~~ii~~D~l~~d~~~~~~~-~vvgNLP  103 (258)
T pfam00398        33 TVLEIGPGKGALTEELAKR-----AKQVVAIEIDPRLAKRLQKKLALHPNVEVVHQDFLKFSFPKHEPF-LVVGNIP  103 (258)
T ss_pred             EEEEECCCHHHHHHHHHHC-----CCCEEEEECCHHHHHHHHHHHCCCCCEEEEECCHHCCCCCCCCCE-EEEECCC
T ss_conf             7999799623999999961-----694799954477999999864428977999663010575457861-6894488