HHsearch results for GI: 254780516 and protein with PDBid: 1uwv_A

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=97.41  E-value=9.9e-05  Score=43.07  Aligned_cols=71  Identities=23%  Similarity=0.280  Sum_probs=49.1

Q ss_pred             EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCC-----C-CCCCEEEEEECC---CCCCCEEEEEC
Q ss_conf             69641079478899998722208956999980695551122200123-----3-232115897536---57887199986
Q gi|254780516|r    3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-----T-LIFGDIAKIKTQ---DIPDHDVLLAG   73 (83)
Q Consensus         3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~-----~-~~~~DI~~~~~~---~~~~~D~l~gG   73 (83)
                      +++|||||+|.+++.|..     ..+.|.++|+++.|.+.-+.|...     . .+.+|+.+.-.+   .....|+++--
T Consensus       289 ~vlDLYcG~G~fsl~La~-----~~~~V~gvE~~~~Av~~A~~na~~n~~~n~~f~~~~~~~~~~~~~~~~~~~d~vilD  363 (433)
T 1uwv_A          289 RVLDLFCGMGNFTLPLAT-----QAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLD  363 (433)
T ss_dssp             EEEEESCTTTTTHHHHHT-----TSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEEC
T ss_pred             EEEEECCCCCHHHHHHHH-----HCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHCCCCCEEEEC
T ss_conf             799956885177787665-----056245663549999999999998499756999147566644306652799989989


Q ss_pred             CCCCC
Q ss_conf             89975
Q gi|254780516|r   74 FPCQP   78 (83)
Q Consensus        74 ~PCq~   78 (83)
                      ||=.+
T Consensus       364 PPR~G  368 (433)
T 1uwv_A          364 PARAG  368 (433)
T ss_dssp             CCTTC
T ss_pred             CCCCC
T ss_conf             99807