HHsearch results for GI: 254780516 and protein with PDBid: 2okc_A
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, structural genomics; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=92.15 E-value=0.23 Score=26.17 Aligned_cols=75 Identities=20% Similarity=0.195 Sum_probs=44.4
Q ss_pred CEEEEECCCCCHHHHHHHHHHHCCC----------CEEEEEEECCHHHHHHHHHCCC---CCCCCCEEEEEECCC---CC
Q ss_conf 2696410794788999987222089----------5699998069555112220012---332321158975365---78
Q gi|254780516|r 2 LKITDLFCGIGGIRLDLEQTFNHRN----------VECFFSSEINPYSVKTYQANFP---NTLIFGDIAKIKTQD---IP 65 (83)
Q Consensus 2 l~v~~LFsG~GG~~~gl~~a~~~~~----------~~~v~a~e~d~~a~~~y~~n~~---~~~~~~DI~~~~~~~---~~ 65 (83)
-+|+|-+||.|||-..+-+...+.. -..++..|+++.+...-+.|.- ......++..-+..+ ..
T Consensus 173 ~~IlDPacGsG~fL~~~~~~~~~~~~~~~~~~~~~~~~i~G~e~~~~~~~la~~nl~l~~~~~~~~~i~~~d~~~~~~~~ 252 (445)
T 2okc_A 173 ETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKEPST 252 (445)
T ss_dssp CCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSCCSS
T ss_pred CEEECCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCEECEECCHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHCCCC
T ss_conf 97812788976659999999987312277775530101423412099999999623102776432012215303202434
Q ss_pred CCEEEEECCCC
Q ss_conf 87199986899
Q gi|254780516|r 66 DHDVLLAGFPC 76 (83)
Q Consensus 66 ~~D~l~gG~PC 76 (83)
++|++++=||=
T Consensus 253 ~fD~Ii~NPPf 263 (445)
T 2okc_A 253 LVDVILANPPF 263 (445)
T ss_dssp CEEEEEECCCS
T ss_pred CCCEEECCCCC
T ss_conf 68722458997