HHSEARCH alignment of GI: 254780516 and SCOP domain: d1sqga2

Alignment
>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=96.20  E-value=0.008  Score=32.30  Aligned_cols=75  Identities=15%  Similarity=0.181  Sum_probs=51.2

Q ss_pred             CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCCCCCEEEEEECC------CCCCCEEEEECCC
Q ss_conf             2696410794788999987222089569999806955511222001233232115897536------5788719998689
Q gi|254780516|r    2 LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ------DIPDHDVLLAGFP   75 (83)
Q Consensus         2 l~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~~~~DI~~~~~~------~~~~~D~l~gG~P   75 (83)
                      .+|+|+||+.||=+..+..+..+   ..+.|+|.++...+.++.|....-.-..+......      .-..+|.+.--+|
T Consensus       104 ~~vLD~CAaPGgKt~~la~l~~~---~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~DaP  180 (284)
T d1sqga2         104 EHILDLCAAPGGKTTHILEVAPE---AQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAP  180 (284)
T ss_dssp             CEEEEESCTTCHHHHHHHHHCTT---CEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEECC
T ss_pred             CEEEECCCCCCCCHHHHHHHHHH---HHHHHHHCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHCCCCCCCEEEEECC
T ss_conf             23676267666400333343211---333554256455566765541045322033213234200102356557998365


Q ss_pred             CCCC
Q ss_conf             9754
Q gi|254780516|r   76 CQPF   79 (83)
Q Consensus        76 Cq~f   79 (83)
                      |.+-
T Consensus       181 CSg~  184 (284)
T d1sqga2         181 CSAT  184 (284)
T ss_dssp             CCCG
T ss_pred             CCCC
T ss_conf             1146


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]