HHSEARCH alignment of GI: 254780516 and SCOP domain: d2c7pa1

Alignment
>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}
Probab=99.97  E-value=4.1e-32  Score=179.39  Aligned_cols=77  Identities=48%  Similarity=0.950  Sum_probs=73.5

Q ss_pred             CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCEEEEECCCCCCCCC
Q ss_conf             26964107947889999872220895699998069555112220012332321158975365788719998689975436
Q gi|254780516|r    2 LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQ   81 (83)
Q Consensus         2 l~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~~~~~~~DI~~~~~~~~~~~D~l~gG~PCq~fS~   81 (83)
                      ||++|||||+||+++||+++    |+++++++|+|++|++||++|||++. ++||++++.++++++|+|+||||||+||.
T Consensus        12 lrv~~lFsG~Gg~~~gl~~a----G~~~v~a~e~d~~a~~~~~~N~~~~~-~~Di~~~~~~~~~~~Dll~ggpPCq~fS~   86 (327)
T d2c7pa1          12 LRFIDLFAGLGGFRLALESC----GAECVYSNEWDKYAQEVYEMNFGEKP-EGDITQVNEKTIPDHDILCAGFPCQAFSI   86 (327)
T ss_dssp             CEEEEETCTTTHHHHHHHHT----TCEEEEEECCCHHHHHHHHHHHSCCC-BSCGGGSCGGGSCCCSEEEEECCCTTTCT
T ss_pred             CEEEEECCCCCHHHHHHHHC----CCEEEEEEECCHHHHHHHHHHCCCCC-CCCHHCCCHHHCCEEEEEECCCCCCHHHH
T ss_conf             81899780656899999987----99699999489999999998779998-67431276302422334302555420455


Q ss_pred             CC
Q ss_conf             89
Q gi|254780516|r   82 AG   83 (83)
Q Consensus        82 aG   83 (83)
                      ||
T Consensus        87 ag   88 (327)
T d2c7pa1          87 SG   88 (327)
T ss_dssp             TS
T ss_pred             HH
T ss_conf             54


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]