RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780516|ref|YP_003064929.1| type II modification methyltransferase [Candidatus Liberibacter asiaticus str. psy62] (83 letters) >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} Length = 324 Score = 82.0 bits (201), Expect = 1e-17 Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 4/79 (5%) Query: 2 LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61 + + LF G GG+ L ++ ++E + KTY++N LI GDI+KI + Sbjct: 1 MNLISLFSGAGGLDLGFQKA----GFRIICANEYDKSIWKTYESNHSAKLIKGDISKISS 56 Query: 62 QDIPDHDVLLAGFPCQPFS 80 + P D ++ G PCQ +S Sbjct: 57 DEFPKCDGIIGGPPCQSWS 75 >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} Length = 327 Score = 76.6 bits (187), Expect = 5e-16 Identities = 36/81 (44%), Positives = 49/81 (60%), Gaps = 5/81 (6%) Query: 2 LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61 L+ DLF G+GG RL LE EC +S+E + Y+ + Y+ NF GDI ++ Sbjct: 12 LRFIDLFAGLGGFRLALESC----GAECVYSNEWDKYAQEVYEMNFGEK-PEGDITQVNE 66 Query: 62 QDIPDHDVLLAGFPCQPFSQA 82 + IPDHD+L AGFPCQ FS + Sbjct: 67 KTIPDHDILCAGFPCQAFSIS 87 >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} Length = 343 Score = 71.6 bits (174), Expect = 1e-14 Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 5/83 (6%) Query: 2 LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60 L++ +L+ G+GG+ L ++ + + ++N + + Y+ NFP+T L+ I I Sbjct: 3 LRVLELYSGVGGMHHALRESC--IPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGIT 60 Query: 61 TQDIP--DHDVLLAGFPCQPFSQ 81 ++ D++L PCQPF++ Sbjct: 61 LEEFDRLSFDMILMSPPCQPFTR 83 >d3bi1a3 c.56.5.5 (A:57-117,A:351-593) Glutamate carboxypeptidase II FOLH1 {Human (Homo sapiens) [TaxId: 9606]} Length = 304 Score = 24.5 bits (52), Expect = 2.9 Identities = 9/54 (16%), Positives = 17/54 (31%) Query: 30 FFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83 + ++ + Y T I+ I ++ PD V+L G Sbjct: 44 WKEFGLDSVELAHYDVLLEVTRIYNVIGTLRGAVEPDRYVILGGHRDSWVFGGI 97 >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328 Score = 24.0 bits (51), Expect = 3.6 Identities = 11/77 (14%), Positives = 23/77 (29%), Gaps = 6/77 (7%) Query: 3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62 DL G+G + L + N ++ E K + F K + Sbjct: 154 LFVDLGSGVGQVVLQVAAATNCKHHYGV---EKADIPAKYAETMDRE---FRKWMKWYGK 207 Query: 63 DIPDHDVLLAGFPCQPF 79 ++ + F + + Sbjct: 208 KHAEYTLERGDFLSEEW 224 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.325 0.143 0.447 Gapped Lambda K H 0.267 0.0465 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 311,055 Number of extensions: 11530 Number of successful extensions: 36 Number of sequences better than 10.0: 1 Number of HSP's gapped: 33 Number of HSP's successfully gapped: 10 Length of query: 83 Length of database: 2,407,596 Length adjustment: 49 Effective length of query: 34 Effective length of database: 1,734,826 Effective search space: 58984084 Effective search space used: 58984084 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 47 (22.5 bits)