RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780516|ref|YP_003064929.1| type II modification
methyltransferase [Candidatus Liberibacter asiaticus str. psy62]
         (83 letters)



>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus
          aegyptius [TaxId: 197575]}
          Length = 324

 Score = 82.0 bits (201), Expect = 1e-17
 Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 4/79 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          + +  LF G GG+ L  ++           ++E +    KTY++N    LI GDI+KI +
Sbjct: 1  MNLISLFSGAGGLDLGFQKA----GFRIICANEYDKSIWKTYESNHSAKLIKGDISKISS 56

Query: 62 QDIPDHDVLLAGFPCQPFS 80
           + P  D ++ G PCQ +S
Sbjct: 57 DEFPKCDGIIGGPPCQSWS 75


>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus
          haemolyticus [TaxId: 726]}
          Length = 327

 Score = 76.6 bits (187), Expect = 5e-16
 Identities = 36/81 (44%), Positives = 49/81 (60%), Gaps = 5/81 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L+  DLF G+GG RL LE        EC +S+E + Y+ + Y+ NF      GDI ++  
Sbjct: 12 LRFIDLFAGLGGFRLALESC----GAECVYSNEWDKYAQEVYEMNFGEK-PEGDITQVNE 66

Query: 62 QDIPDHDVLLAGFPCQPFSQA 82
          + IPDHD+L AGFPCQ FS +
Sbjct: 67 KTIPDHDILCAGFPCQAFSIS 87


>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 343

 Score = 71.6 bits (174), Expect = 1e-14
 Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          L++ +L+ G+GG+   L ++      +   + ++N  + + Y+ NFP+T L+   I  I 
Sbjct: 3  LRVLELYSGVGGMHHALRESC--IPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGIT 60

Query: 61 TQDIP--DHDVLLAGFPCQPFSQ 81
           ++      D++L   PCQPF++
Sbjct: 61 LEEFDRLSFDMILMSPPCQPFTR 83


>d3bi1a3 c.56.5.5 (A:57-117,A:351-593) Glutamate carboxypeptidase
          II FOLH1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 304

 Score = 24.5 bits (52), Expect = 2.9
 Identities = 9/54 (16%), Positives = 17/54 (31%)

Query: 30 FFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          +    ++   +  Y      T I+  I  ++    PD  V+L G          
Sbjct: 44 WKEFGLDSVELAHYDVLLEVTRIYNVIGTLRGAVEPDRYVILGGHRDSWVFGGI 97


>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone
           methyltransferase Dot1l {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 328

 Score = 24.0 bits (51), Expect = 3.6
 Identities = 11/77 (14%), Positives = 23/77 (29%), Gaps = 6/77 (7%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
              DL  G+G + L +    N ++       E      K  +        F    K   +
Sbjct: 154 LFVDLGSGVGQVVLQVAAATNCKHHYGV---EKADIPAKYAETMDRE---FRKWMKWYGK 207

Query: 63  DIPDHDVLLAGFPCQPF 79
              ++ +    F  + +
Sbjct: 208 KHAEYTLERGDFLSEEW 224


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.143    0.447 

Gapped
Lambda     K      H
   0.267   0.0465    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 311,055
Number of extensions: 11530
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 10
Length of query: 83
Length of database: 2,407,596
Length adjustment: 49
Effective length of query: 34
Effective length of database: 1,734,826
Effective search space: 58984084
Effective search space used: 58984084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.5 bits)