Query gi|254780518|ref|YP_003064931.1| hypothetical protein CLIBASIA_02025 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 48
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Tue May 31 20:07:59 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780518.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1e0n_A Hypothetical protein; Y 7.6 83 0.0035 14.3 0.3 11 1-11 13-23 (27)
2 3i9v_7 NADH-quinone oxidoreduc 6.0 1.8E+02 0.0076 12.8 1.5 12 32-43 24-35 (129)
3 1fu3_A Delta-conotoxin txvia; 5.0 1.6E+02 0.0067 13.0 0.6 12 23-34 3-14 (27)
4 1dl0_A J-atracotoxin-HV1C; neu 4.4 1.9E+02 0.0082 12.6 0.7 12 31-42 23-34 (37)
5 3lcz_A YCZA, inhibitor of trap 4.4 1.7E+02 0.007 12.9 0.3 30 10-39 7-36 (53)
6 2bx9_A Anti-trap, AT, tryptoph 4.4 1.7E+02 0.0072 12.9 0.4 30 10-39 7-36 (53)
7 2obi_A PHGPX, GPX-4, phospholi 3.7 2.7E+02 0.011 11.9 1.5 28 10-37 10-48 (183)
8 3e1s_A Exodeoxyribonuclease V, 3.2 1.6E+02 0.0067 13.0 -0.6 24 18-41 33-56 (574)
9 2sic_I Streptomyces subtilisin 3.1 3E+02 0.012 11.8 0.7 18 23-40 89-106 (107)
10 2fhz_A Colicin-E5 immunity pro 2.4 3.8E+02 0.016 11.3 0.5 17 28-44 37-53 (109)
No 1
>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1
Probab=7.56 E-value=83 Score=14.34 Aligned_cols=11 Identities=45% Similarity=0.945 Sum_probs=7.1
Q ss_pred CCCCCCCEEEE
Q ss_conf 90147611478
Q gi|254780518|r 1 MYYNSNTVSKL 11 (48)
Q Consensus 1 myynsntvskl 11 (48)
||||...-.||
T Consensus 13 ~yynaq~qtkl 23 (27)
T 1e0n_A 13 LYYNAEQKTKL 23 (27)
T ss_dssp EEEETTTTEEE
T ss_pred EEEEHHHHHCC
T ss_conf 36606654003
No 2
>3i9v_7 NADH-quinone oxidoreductase subunit 15; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_7* 3iam_7* 3ias_7* 3m9s_7*
Probab=5.99 E-value=1.8e+02 Score=12.77 Aligned_cols=12 Identities=33% Similarity=0.623 Sum_probs=5.1
Q ss_pred HHCCCCCEEEEE
Q ss_conf 110375315578
Q gi|254780518|r 32 AASRGVSFARVL 43 (48)
Q Consensus 32 aasrgvsfarvl 43 (48)
|+.|||+|..+-
T Consensus 24 A~arGv~feKea 35 (129)
T 3i9v_7 24 AQAKGVRFEKEA 35 (129)
T ss_dssp HHHTTCCEEEEE
T ss_pred HHHCCCCEEECC
T ss_conf 874476411215
No 3
>1fu3_A Delta-conotoxin txvia; cystine knot motif, triple-stranded, metal transport inhibitor; NMR {Synthetic} SCOP: g.3.6.1
Probab=5.03 E-value=1.6e+02 Score=13.02 Aligned_cols=12 Identities=50% Similarity=0.747 Sum_probs=8.9
Q ss_pred HCCCCCCCCHHC
Q ss_conf 016984210110
Q gi|254780518|r 23 KLSGNPCNLAAS 34 (48)
Q Consensus 23 klsgnpcnlaas 34 (48)
|-||.-|||-..
T Consensus 3 kqsgemcnlldq 14 (27)
T 1fu3_A 3 KQSGEMCNLLDQ 14 (27)
T ss_dssp BCTTSBCCSSSC
T ss_pred CCHHHHHHHHHC
T ss_conf 012046553221
No 4
>1dl0_A J-atracotoxin-HV1C; neurotoxin, insecticidal, cystine knot, vicinal disulfide; NMR {Synthetic} SCOP: g.3.6.2
Probab=4.39 E-value=1.9e+02 Score=12.62 Aligned_cols=12 Identities=50% Similarity=0.656 Sum_probs=9.2
Q ss_pred CHHCCCCCEEEE
Q ss_conf 011037531557
Q gi|254780518|r 31 LAASRGVSFARV 42 (48)
Q Consensus 31 laasrgvsfarv 42 (48)
-|.|.|||+.|-
T Consensus 23 kaesngvsycrk 34 (37)
T 1dl0_A 23 KAESNGVSYCRK 34 (37)
T ss_dssp EECTTSCEEEEE
T ss_pred ECCCCCCCEECC
T ss_conf 413487412515
No 5
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) sequence RTPA; anti-trap, tryptophan RNA-binding attenuation protein; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=4.37 E-value=1.7e+02 Score=12.92 Aligned_cols=30 Identities=23% Similarity=0.541 Sum_probs=24.0
Q ss_pred EEEEEEECCCCCHHCCCCCCCCHHCCCCCE
Q ss_conf 788886244360001698421011037531
Q gi|254780518|r 10 KLSVACTSETGISKLSGNPCNLAASRGVSF 39 (48)
Q Consensus 10 klsvactsetgisklsgnpcnlaasrgvsf 39 (48)
.|.++|..-.|-....|.||.-....||-.
T Consensus 7 dle~tcp~c~~~g~~e~~pcp~c~~kgvil 36 (53)
T 3lcz_A 7 DLETTCPNCNGSGREEPEPCPKCLGKGVIL 36 (53)
T ss_dssp HHEEECTTTTTSCEETTEECTTTTTSSEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 410028676675762798386345753699
No 6
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibitory protein; transcription regulation, Trp RNA-binding attenuation protein; 2.8A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=4.35 E-value=1.7e+02 Score=12.89 Aligned_cols=30 Identities=30% Similarity=0.677 Sum_probs=23.9
Q ss_pred EEEEEEECCCCCHHCCCCCCCCHHCCCCCE
Q ss_conf 788886244360001698421011037531
Q gi|254780518|r 10 KLSVACTSETGISKLSGNPCNLAASRGVSF 39 (48)
Q Consensus 10 klsvactsetgisklsgnpcnlaasrgvsf 39 (48)
.|.++|..-.|-....|.||.-....||-.
T Consensus 7 dle~tcp~c~~~g~~e~~pcp~c~~kgvil 36 (53)
T 2bx9_A 7 DLEVACPKCERAGEIEGTPCPACSGKGVIL 36 (53)
T ss_dssp HHEEECTTTTTSSEETTEECTTTTTSSEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 410028676675763798486445753699
No 7
>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}
Probab=3.70 E-value=2.7e+02 Score=11.93 Aligned_cols=28 Identities=29% Similarity=0.409 Sum_probs=21.2
Q ss_pred EEEEEEECCCCCHH-----------CCCCCCCCHHCCCC
Q ss_conf 78888624436000-----------16984210110375
Q gi|254780518|r 10 KLSVACTSETGISK-----------LSGNPCNLAASRGV 37 (48)
Q Consensus 10 klsvactsetgisk-----------lsgnpcnlaasrgv 37 (48)
.-|++|.+++.-.. +.|++.+|..-||-
T Consensus 10 ~~~~~~~~~~~~~~~ks~~DFsl~D~dG~~vsLsdfkGK 48 (183)
T 2obi_A 10 HGSACCASRDDWRCARSMHEFSAKDIDGHMVNLDKYRGF 48 (183)
T ss_dssp ---------CCGGGCCSGGGCEEEBTTSCEEEGGGGTTS
T ss_pred CCCEEECCCCCCCCCCCEECCEEECCCCCEECHHHCCCC
T ss_conf 311134045673248875242777799499608992998
No 8
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, hydrolase; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=3.23 E-value=1.6e+02 Score=13.03 Aligned_cols=24 Identities=17% Similarity=0.403 Sum_probs=13.3
Q ss_pred CCCCHHCCCCCCCCHHCCCCCEEE
Q ss_conf 436000169842101103753155
Q gi|254780518|r 18 ETGISKLSGNPCNLAASRGVSFAR 41 (48)
Q Consensus 18 etgisklsgnpcnlaasrgvsfar 41 (48)
+..+.++..||--|..-+|++|.+
T Consensus 33 ~~~~~~i~~nPy~l~~i~gi~f~~ 56 (574)
T 3e1s_A 33 ADALDRLEKDLFTLTEVEGIGFLT 56 (574)
T ss_dssp -----------CGGGTSSSCCHHH
T ss_pred HHHHHHHHHCCCEEEECCCCCHHH
T ss_conf 899999984991231258899589
No 9
>2sic_I Streptomyces subtilisin inhibitor (SSI); complex (proteinase/inhibitor); 1.80A {Bacillus amyloliquefaciens} SCOP: d.84.1.1 PDB: 3ssi_A 3sic_I 2tld_I 5sic_I
Probab=3.11 E-value=3e+02 Score=11.75 Aligned_cols=18 Identities=28% Similarity=0.543 Sum_probs=10.7
Q ss_pred HCCCCCCCCHHCCCCCEE
Q ss_conf 016984210110375315
Q gi|254780518|r 23 KLSGNPCNLAASRGVSFA 40 (48)
Q Consensus 23 klsgnpcnlaasrgvsfa 40 (48)
.--+|+|.+++..|.-|+
T Consensus 89 ~tf~N~C~~~~~tg~VF~ 106 (107)
T 2sic_I 89 RVFSNECEMNAHGSSVFA 106 (107)
T ss_dssp EEESSHHHHHTTSSSTTC
T ss_pred EECCCCEEEEECCCCEEE
T ss_conf 870676799407776051
No 10
>2fhz_A Colicin-E5 immunity protein; protein-protein complex, inhibition of ribonuclease, immune system, hydrolase; 1.15A {Escherichia coli} SCOP: d.311.1.1 PDB: 2dfx_I
Probab=2.38 E-value=3.8e+02 Score=11.25 Aligned_cols=17 Identities=29% Similarity=0.354 Sum_probs=13.4
Q ss_pred CCCCHHCCCCCEEEEEE
Q ss_conf 42101103753155787
Q gi|254780518|r 28 PCNLAASRGVSFARVLV 44 (48)
Q Consensus 28 pcnlaasrgvsfarvlv 44 (48)
-|+.|+.||.-.+|+--
T Consensus 37 VCe~Atk~gL~I~~IEG 53 (109)
T 2fhz_A 37 VCNEAAKKGLWILGIDG 53 (109)
T ss_dssp HHHHHHHHTCCEEEEEE
T ss_pred HHHHHHHCCCEEEEEEC
T ss_conf 99999866916998642
Done!