BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780518|ref|YP_003064931.1| hypothetical protein CLIBASIA_02025 [Candidatus Liberibacter asiaticus str. psy62] (48 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780518|ref|YP_003064931.1| hypothetical protein CLIBASIA_02025 [Candidatus Liberibacter asiaticus str. psy62] Length = 48 Score = 97.1 bits (240), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 48/48 (100%), Positives = 48/48 (100%) Query: 1 MYYNSNTVSKLSVACTSETGISKLSGNPCNLAASRGVSFARVLVFLSD 48 MYYNSNTVSKLSVACTSETGISKLSGNPCNLAASRGVSFARVLVFLSD Sbjct: 1 MYYNSNTVSKLSVACTSETGISKLSGNPCNLAASRGVSFARVLVFLSD 48 >gi|254780439|ref|YP_003064852.1| carbamoyl phosphate synthase large subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 1162 Score = 20.4 bits (41), Expect = 6.1, Method: Composition-based stats. Identities = 8/14 (57%), Positives = 10/14 (71%) Query: 17 SETGISKLSGNPCN 30 S+ +S LSG PCN Sbjct: 552 SDARLSILSGIPCN 565 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.316 0.126 0.353 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 25,465 Number of Sequences: 1233 Number of extensions: 507 Number of successful extensions: 2 Number of sequences better than 100.0: 2 Number of HSP's better than 100.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2 length of query: 48 length of database: 328,796 effective HSP length: 21 effective length of query: 27 effective length of database: 302,903 effective search space: 8178381 effective search space used: 8178381 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.2 bits) S2: 31 (16.5 bits)