HHsearch alignment for GI: 254780519 and conserved domain: PRK05700

>PRK05700 fliQ flagellar biosynthesis protein FliQ; Validated.
Probab=100.00  E-value=1.4e-39  Score=213.48  Aligned_cols=88  Identities=35%  Similarity=0.646  Sum_probs=87.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             98799999999999999999999999999999999999999884653698899999999999999999999999999999
Q gi|254780519|r    1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLV   80 (88)
Q Consensus         1 M~~~~vi~l~~~al~~~l~ls~P~Ll~alvvGl~Isi~QA~TQIQEqTLsFvPKliav~~~l~~~~pwm~~~l~~f~~~i   80 (88)
T Consensus         1 M~~~~~i~l~~~al~~~l~ls~P~L~~alvVGl~Isi~QA~TqIqEqTLsFvPKliav~~~l~~~g~Wm~~~l~~f~~~i   80 (89)
T PRK05700          1 MTPESVMDLFREAMKVALMLAAPLLLVALIVGLVVSIFQAATQINEQTLSFIPKILAVLLTLIIAGPWMLNTLLDYTRTL   80 (89)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             98889999999999999999888999999999999999999999998998799999999999998789999999999999


Q ss_pred             HHHHHHCC
Q ss_conf             99934409
Q gi|254780519|r   81 LSRIQSSL   88 (88)
Q Consensus        81 f~~ip~~i   88 (88)
T Consensus        81 f~~ip~lv   88 (89)
T PRK05700         81 FTNIPTLI   88 (89)
T ss_pred             HHHHHHHC
T ss_conf             99877666