HHsearch alignment for GI: 254780519 and conserved domain: PRK05700
>PRK05700 fliQ flagellar biosynthesis protein FliQ; Validated.
Probab=100.00 E-value=1.4e-39 Score=213.48 Aligned_cols=88 Identities=35% Similarity=0.646 Sum_probs=87.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98799999999999999999999999999999999999999884653698899999999999999999999999999999
Q gi|254780519|r 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLV 80 (88)
Q Consensus 1 M~~~~vi~l~~~al~~~l~ls~P~Ll~alvvGl~Isi~QA~TQIQEqTLsFvPKliav~~~l~~~~pwm~~~l~~f~~~i 80 (88)
T Consensus 1 M~~~~~i~l~~~al~~~l~ls~P~L~~alvVGl~Isi~QA~TqIqEqTLsFvPKliav~~~l~~~g~Wm~~~l~~f~~~i 80 (89)
T PRK05700 1 MTPESVMDLFREAMKVALMLAAPLLLVALIVGLVVSIFQAATQINEQTLSFIPKILAVLLTLIIAGPWMLNTLLDYTRTL 80 (89)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98889999999999999999888999999999999999999999998998799999999999998789999999999999
Q ss_pred HHHHHHCC
Q ss_conf 99934409
Q gi|254780519|r 81 LSRIQSSL 88 (88)
Q Consensus 81 f~~ip~~i 88 (88)
T Consensus 81 f~~ip~lv 88 (89)
T PRK05700 81 FTNIPTLI 88 (89)
T ss_pred HHHHHHHC
T ss_conf 99877666