HHsearch alignment for GI: 254780519 and conserved domain: PRK06010
>PRK06010 fliQ flagellar biosynthesis protein FliQ; Reviewed.
Probab=100.00 E-value=2.4e-39 Score=212.32 Aligned_cols=87 Identities=55% Similarity=0.949 Sum_probs=85.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98799999999999999999999999999999999999999884653698899999999999999999999999999999
Q gi|254780519|r 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLV 80 (88)
Q Consensus 1 M~~~~vi~l~~~al~~~l~ls~P~Ll~alvvGl~Isi~QA~TQIQEqTLsFvPKliav~~~l~~~~pwm~~~l~~f~~~i 80 (88)
T Consensus 1 Mt~~~vi~l~~~al~~~l~ls~P~L~valvVGl~IslfQA~TQIqEqTLsFvPKliav~~~l~~~~pwm~~~l~~ft~~i 80 (88)
T PRK06010 1 MNEADALDVVRDAIWTVLIASGPAVLAAMVVGVAIALFQALTQIQEMTLTFVPKIVAIFVTLLLTLPFMGAQISAFTLRI 80 (88)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98889999999999999999876999999999999999999999998998799999999999998889999999999999
Q ss_pred HHHHHHC
Q ss_conf 9993440
Q gi|254780519|r 81 LSRIQSS 87 (88)
Q Consensus 81 f~~ip~~ 87 (88)
T Consensus 81 f~~I~gg 87 (88)
T PRK06010 81 YSRIAGG 87 (88)
T ss_pred HHHHCCC
T ss_conf 9871346