HHsearch alignment for GI: 254780519 and conserved domain: PRK12780

>PRK12780 fliR flagellar biosynthesis protein FliR; Reviewed.
Probab=94.06  E-value=0.37  Score=25.08  Aligned_cols=78  Identities=10%  Similarity=0.104  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999999-9998846536988999999999999999999999999999999
Q gi|254780519|r    4 ADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFL-QALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVL   81 (88)
Q Consensus         4 ~~vi~l~~~al~~~l~ls~P~Ll~alvvGl~Isi~-QA~TQIQEqTLsFvPKliav~~~l~~~~pwm~~~l~~f~~~if   81 (88)
T Consensus       170 ~~~~~~~~~~F~lal~lAaPvi~~~ll~nv~lGil~R~~PQlNvf~vg~P~~i~~Gl~vL~l~~p~l~~~f~~~f~~~~  248 (250)
T PRK12780        170 VQLVDQLSEAFTLALRIASPFIIYSVIVNLAVGLANKLTPTIPVYFISTPFVLFGGLLLLYLLSDEMLTQFSLAYAAWL  248 (250)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999999999999999999998033555899995699999999999999999999999999997