Query gi|254780519|ref|YP_003064932.1| flagellar biosynthesis protein FliQ [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 88
No_of_seqs 112 out of 591
Neff 4.8
Searched_HMMs 33803
Date Wed Jun 1 16:42:51 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780519.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3dhw_A D-methionine transport 23.1 35 0.001 15.1 1.2 39 4-42 3-41 (217)
2 >1x4t_A Hypothetical protein L 10.8 98 0.0029 12.9 1.0 18 33-50 33-50 (92)
3 >1lm7_A Subdomain of desmoplak 10.5 22 0.00065 16.0 -2.4 11 32-42 9-19 (23)
4 >1v54_M VIIIB, IX, cytochrome 8.5 1.4E+02 0.0041 12.1 3.3 25 55-79 19-43 (46)
5 >2nqb_D Histone H2B; nucleosom 7.5 1.6E+02 0.0046 11.9 2.7 17 70-86 57-73 (123)
6 >1td6_A F10_ORF294, hypothetic 6.7 1.6E+02 0.0046 11.9 0.6 11 35-45 24-34 (61)
7 >1brv_A Protein G, BRSV-G regi 6.2 83 0.0024 13.2 -1.0 10 45-54 7-16 (32)
8 >1vf5_E Protein PET L; photosy 5.8 2E+02 0.0058 11.4 1.1 21 24-44 9-29 (32)
9 >2dam_A ETEA protein; KIAA0887 5.4 2.1E+02 0.0062 11.3 1.4 17 34-50 21-37 (67)
10 >1sdi_A ORF-23, hypothetical p 5.3 2.1E+02 0.0062 11.2 1.7 11 36-46 14-24 (213)
No 1
>>3dhw_A D-methionine transport system permease protein METI; ABC-transporter, methionine uptake transporter, membrane protein, amino-acid transport; 3.70A {Escherichia coli K12} (A:)
Probab=23.11 E-value=35 Score=15.07 Aligned_cols=39 Identities=15% Similarity=0.294 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999999999999999998
Q gi|254780519|r 4 ADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALT 42 (88)
Q Consensus 4 ~~vi~l~~~al~~~l~ls~P~Ll~alvvGl~Isi~QA~T 42 (88)
++..+..-++++..++++......++++|+..+++-+..
T Consensus 3 ~~~~~~l~~~l~~tl~~~~~~~~i~~vig~~la~~~~~~ 41 (217)
T 3dhw_A 3 EPMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVT 41 (217)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHTTGGGGGGGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 789999999999999999999999999999999999998
No 2
>>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} (A:)
Probab=10.84 E-value=98 Score=12.87 Aligned_cols=18 Identities=28% Similarity=0.314 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 999999999884653698
Q gi|254780519|r 33 ILIAFLQALTQIQEVTLT 50 (88)
Q Consensus 33 l~Isi~QA~TQIQEqTLs 50 (88)
++--|-|++|+||+..|+
T Consensus 33 ii~EI~~kvt~Iqn~~L~ 50 (92)
T 1x4t_A 33 IIGEISKKVAQIQNAGLG 50 (92)
T ss_dssp HHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHCCCCCC
T ss_conf 999999999985089987
No 3
>>1lm7_A Subdomain of desmoplakin carboxy-terminal domain (DPCT); plakin repeat, structural protein; 3.00A {Homo sapiens} (A:129-151)
Probab=10.50 E-value=22 Score=16.04 Aligned_cols=11 Identities=36% Similarity=0.730 Sum_probs=7.3
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999998
Q gi|254780519|r 32 GILIAFLQALT 42 (88)
Q Consensus 32 Gl~Isi~QA~T 42 (88)
|-+||+|||..
T Consensus 9 gniislfqamn 19 (23)
T 1lm7_A 9 GNIISLFQAMN 19 (23)
T ss_dssp CCEECHHHHHT
T ss_pred CCEEEHHHHHH
T ss_conf 84740999977
No 4
>>1v54_M VIIIB, IX, cytochrome C oxidase polypeptide VIII-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} (M:)
Probab=8.52 E-value=1.4e+02 Score=12.10 Aligned_cols=25 Identities=8% Similarity=0.352 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999
Q gi|254780519|r 55 IIAVFITLIISAPFIGGQISSFVTL 79 (88)
Q Consensus 55 liav~~~l~~~~pwm~~~l~~f~~~ 79 (88)
+-..+.+++.-.+|.++.+-+|-++
T Consensus 19 ltv~f~~~L~PaGWVLshLe~Ykkr 43 (46)
T 1v54_M 19 LSVTFLSFLLPAGWVLYHLDNYKKS 43 (46)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHTC
T ss_pred HHHHHHHHHCCHHHHHHHHHHHCCC
T ss_conf 9999999972079999999874004
No 5
>>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D* (D:)
Probab=7.49 E-value=1.6e+02 Score=11.86 Aligned_cols=17 Identities=29% Similarity=0.440 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999344
Q gi|254780519|r 70 GGQISSFVTLVLSRIQS 86 (88)
Q Consensus 70 ~~~l~~f~~~if~~ip~ 86 (88)
.+.|.+|.+++|++|.+
T Consensus 57 m~imnSfvnDiFerIa~ 73 (123)
T 2nqb_D 57 MSIMNSFVNDIFERIAA 73 (123)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999
No 6
>>1td6_A F10_ORF294, hypothetical protein Mg237 homolog; alpha helical, structural genomics, PSI, protein structure initiative; 2.50A {Mycoplasma pneumoniae} (A:149-209)
Probab=6.68 E-value=1.6e+02 Score=11.88 Aligned_cols=11 Identities=55% Similarity=0.824 Sum_probs=8.1
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999998846
Q gi|254780519|r 35 IAFLQALTQIQ 45 (88)
Q Consensus 35 Isi~QA~TQIQ 45 (88)
.|.|||..||-
T Consensus 24 fsff~alnqip 34 (61)
T 1td6_A 24 FSFFQALNQIP 34 (61)
T ss_dssp HHHHHHHTTCG
T ss_pred HHHHHHHHCCC
T ss_conf 69999986187
No 7
>>1brv_A Protein G, BRSV-G region; attachment protein G of bovine respiratory syncytial virus, immunoglobulin-binding protein; NMR {Bovine respiratory syncytial virus} (A:)
Probab=6.22 E-value=83 Score=13.23 Aligned_cols=10 Identities=40% Similarity=0.507 Sum_probs=7.4
Q ss_pred HHHHHHHHHH
Q ss_conf 6536988999
Q gi|254780519|r 45 QEVTLTFVPK 54 (88)
Q Consensus 45 QEqTLsFvPK 54 (88)
+-|||.+||.
T Consensus 7 n~QtlP~vPc 16 (32)
T 1brv_A 7 NFQTLPYVPC 16 (32)
T ss_pred CCCCCCCCCC
T ss_conf 5430465442
No 8
>>1vf5_E Protein PET L; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} (E:)
Probab=5.82 E-value=2e+02 Score=11.39 Aligned_cols=21 Identities=33% Similarity=0.762 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999884
Q gi|254780519|r 24 VLFSAMFLGILIAFLQALTQI 44 (88)
Q Consensus 24 ~Ll~alvvGl~Isi~QA~TQI 44 (88)
+...|+.-|..+++.-|..+|
T Consensus 9 ivfialffgiavgiifaiksi 29 (32)
T 1vf5_E 9 IVFIALFFGIAVGIIFAIKSI 29 (32)
T ss_dssp HHHHHHHHHHHHHHHTTTTTS
T ss_pred HHHHHHHHHHHHHHEEEEEEE
T ss_conf 999999997886321457877
No 9
>>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=5.40 E-value=2.1e+02 Score=11.25 Aligned_cols=17 Identities=24% Similarity=0.241 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 99999999884653698
Q gi|254780519|r 34 LIAFLQALTQIQEVTLT 50 (88)
Q Consensus 34 ~Isi~QA~TQIQEqTLs 50 (88)
.+.=||+.|.|.+....
T Consensus 21 kL~qFQ~iTGieD~~~~ 37 (67)
T 2dam_A 21 KLLQFQDLTGIESMDQC 37 (67)
T ss_dssp HHHHHHHHHCCSCHHHH
T ss_pred HHHHHHHHCCCCHHHHH
T ss_conf 89866550174209999
No 10
>>1sdi_A ORF-23, hypothetical protein YCFC; structural genomics, paracytosis, peripheral membrane protein, PSI, protein structure initiative; 1.65A {Escherichia coli} (A:)
Probab=5.34 E-value=2.1e+02 Score=11.23 Aligned_cols=11 Identities=18% Similarity=0.253 Sum_probs=6.8
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999988465
Q gi|254780519|r 36 AFLQALTQIQE 46 (88)
Q Consensus 36 si~QA~TQIQE 46 (88)
|++||+.++|+
T Consensus 14 gi~QAa~lV~q 24 (213)
T 1sdi_A 14 GICQSARLVQQ 24 (213)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
Done!