BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780519|ref|YP_003064932.1| flagellar biosynthesis protein
FliQ [Candidatus Liberibacter asiaticus str. psy62]
(88 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
Results from round 1
>gi|254780519|ref|YP_003064932.1| flagellar biosynthesis protein FliQ [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040196|gb|ACT56992.1| flagellar biosynthesis protein FliQ [Candidatus Liberibacter
asiaticus str. psy62]
Length = 88
Score = 167 bits (422), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 88/88 (100%), Positives = 88/88 (100%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI
Sbjct: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
TLIISAPFIGGQISSFVTLVLSRIQSSL
Sbjct: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
>gi|315122290|ref|YP_004062779.1| flagellar biosynthesis protein FliQ [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495692|gb|ADR52291.1| flagellar biosynthesis protein FliQ [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 88
Score = 155 bits (391), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 79/87 (90%), Positives = 85/87 (97%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEADVLEIARAA+WTILS+SAPVL +AMF G+L+AFLQALTQIQEVTLTFVPKIIAVFI
Sbjct: 1 MNEADVLEIARAAIWTILSASAPVLLAAMFFGVLVAFLQALTQIQEVTLTFVPKIIAVFI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
TLIISAPFIGGQIS+FVTLVLSRIQSS
Sbjct: 61 TLIISAPFIGGQISAFVTLVLSRIQSS 87
>gi|117395330|gb|ABK34502.1| putative export protein [Gossypium hirsutum]
Length = 88
Score = 117 bits (292), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 72/87 (82%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEADVL+I +AA+WT+L++S P + SAM +GI++A LQALTQ+QE+TLTFVPKI+AV
Sbjct: 1 MNEADVLDIVQAAIWTVLAASGPAVLSAMVVGIVVALLQALTQVQEITLTFVPKILAVLA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
+ ISAPFIG QIS F T++ SR+QS
Sbjct: 61 AVAISAPFIGSQISIFTTMIFSRVQSG 87
>gi|222147595|ref|YP_002548552.1| flagellar biosynthesis protein FliQ [Agrobacterium vitis S4]
gi|221734583|gb|ACM35546.1| flagellar biosynthetic protein [Agrobacterium vitis S4]
Length = 88
Score = 114 bits (286), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 71/87 (81%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEAD L+I RAA+WT+L +S P + +AM +G+++A +QALTQIQE+TLTFVPKI+A+ +
Sbjct: 1 MNEADALDIMRAAVWTVLIASGPAVLAAMIVGVVVALIQALTQIQEMTLTFVPKIVAIMV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
T+ ISAPF+G QIS F LV SR+QS
Sbjct: 61 TIGISAPFVGSQISIFANLVFSRVQSG 87
>gi|227820881|ref|YP_002824851.1| flagellar biosynthesis protein FliQ [Sinorhizobium fredii NGR234]
gi|227339880|gb|ACP24098.1| flagellar biosynthetic protein FliQ [Sinorhizobium fredii NGR234]
Length = 88
Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 71/87 (81%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEAD L+I +AA+WT++ +S P + +AM +G++IAF+QALTQ+QE+TLTFVPKI+AV +
Sbjct: 1 MNEADALDIVQAAIWTVIVASGPAVLAAMVVGVVIAFIQALTQVQEMTLTFVPKILAVMV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
T ISAPF+G QIS F ++ SRIQS
Sbjct: 61 TAAISAPFVGAQISIFTDIIFSRIQSG 87
>gi|163758038|ref|ZP_02165126.1| flagellar biosynthesis protein Q [Hoeflea phototrophica DFL-43]
gi|162284327|gb|EDQ34610.1| flagellar biosynthesis protein Q [Hoeflea phototrophica DFL-43]
Length = 88
Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/88 (59%), Positives = 70/88 (79%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEAD L+I + A+WT+L +S P + AMF+G+ IAF+QALTQ+QE+TLTFVPKI+AV I
Sbjct: 1 MNEADALDIVQTAIWTVLVASGPAVGVAMFIGVGIAFVQALTQVQEMTLTFVPKIVAVLI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
T+ +SAPF+G QIS+F +V RI+S
Sbjct: 61 TVAVSAPFVGAQISTFTNIVFQRIESGF 88
>gi|15964438|ref|NP_384791.1| flagellar biosynthesis protein FliQ [Sinorhizobium meliloti 1021]
gi|150395509|ref|YP_001325976.1| flagellar biosynthesis protein FliQ [Sinorhizobium medicae
WSM419]
gi|307311580|ref|ZP_07591221.1| flagellar biosynthetic protein FliQ [Sinorhizobium meliloti
BL225C]
gi|307318935|ref|ZP_07598366.1| flagellar biosynthetic protein FliQ [Sinorhizobium meliloti AK83]
gi|15073615|emb|CAC45257.1| Putative flagellar biosynthetic transmembrane protein
[Sinorhizobium meliloti 1021]
gi|150027024|gb|ABR59141.1| flagellar biosynthetic protein FliQ [Sinorhizobium medicae
WSM419]
gi|306895349|gb|EFN26104.1| flagellar biosynthetic protein FliQ [Sinorhizobium meliloti AK83]
gi|306899597|gb|EFN30226.1| flagellar biosynthetic protein FliQ [Sinorhizobium meliloti
BL225C]
Length = 88
Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 70/87 (80%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEAD L+I +AA+WT++ +S P + +AM +G+ IAF+QALTQ+QE+TLTFVPKI+AV I
Sbjct: 1 MNEADALDIVQAAIWTVIVASGPAVLAAMVVGVGIAFIQALTQVQEMTLTFVPKILAVMI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
T ISAPF+G QIS F +V SRIQS
Sbjct: 61 TAAISAPFVGAQISIFTDIVFSRIQSG 87
>gi|222084891|ref|YP_002543420.1| flagellar biosynthesis transmembrane protein [Agrobacterium
radiobacter K84]
gi|221722339|gb|ACM25495.1| flagellar biosynthesis transmembrane protein [Agrobacterium
radiobacter K84]
Length = 88
Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 70/87 (80%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEAD L+I +AA+WT+L +S P + +AM +G++IA +QALTQ+QE TLTFVPKI+AV +
Sbjct: 1 MNEADALDIFQAAIWTVLVASGPAVLAAMVVGLVIALIQALTQVQEATLTFVPKIVAVMV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
T+ ISAPF+G QIS F LV SRIQS
Sbjct: 61 TVGISAPFVGSQISIFTNLVFSRIQSG 87
>gi|10998534|gb|AAG25964.1|AF300968_6 FliQ [Sinorhizobium meliloti]
Length = 88
Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 70/87 (80%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEAD L+I +AA+WT++ +S P + +AM +G+ IAF+QALTQ+QE+TLTFVPKI+AV I
Sbjct: 1 MNEADALDIVQAAIWTVIVASGPAVLAAMVVGVGIAFIQALTQVQEMTLTFVPKILAVMI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
T +SAPF+G QIS F +V SRIQS
Sbjct: 61 TAAVSAPFVGAQISIFTDIVFSRIQSG 87
>gi|118589960|ref|ZP_01547364.1| flagellar biosynthesis protein Q [Stappia aggregata IAM 12614]
gi|118437457|gb|EAV44094.1| flagellar biosynthesis protein Q [Stappia aggregata IAM 12614]
Length = 88
Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 68/87 (78%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNE D L++ R A+WTIL SAP + AM +GI+IA LQALTQ+QE+TLTF+PKI+A+ +
Sbjct: 1 MNEVDALDLVRTAIWTILVGSAPAIVPAMIVGIVIALLQALTQVQEITLTFIPKIVAILV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
++++ PFIGGQI S TL+ +RI++
Sbjct: 61 MIVVAGPFIGGQIYSLTTLIYNRIETG 87
>gi|13472598|ref|NP_104165.1| flagellar biosynthesis protein FliQ [Mesorhizobium loti
MAFF303099]
gi|14023344|dbj|BAB49951.1| flagellar biosynthesis protein; FliQ [Mesorhizobium loti
MAFF303099]
Length = 88
Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 70/87 (80%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEAD L+I + A+WT+L++SAPV+ AM +GI IA +QALTQIQE+TLTFVPKI+A+ +
Sbjct: 1 MNEADALDIVQYAVWTVLTASAPVVLVAMAVGIGIALIQALTQIQEITLTFVPKIVAIML 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
+ ++ PFIGGQIS+F ++ RIQ+
Sbjct: 61 VVALTGPFIGGQISAFTNVIFQRIQNG 87
>gi|319407000|emb|CBI80637.1| Flagellar biosynthetic protein fliQ [Bartonella sp. 1-1C]
Length = 88
Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/88 (56%), Positives = 70/88 (79%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEAD +++ AA+WTIL++S P +F+AM +GI+IA QALTQIQE+TLTF+PKII +F+
Sbjct: 1 MNEADAIDMVTAAIWTILTASGPAVFAAMSVGIIIALFQALTQIQEMTLTFIPKIIIIFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L +APF+GGQI +F LV +RI++
Sbjct: 61 VLAFTAPFVGGQIYAFTQLVYNRIETGF 88
>gi|260466597|ref|ZP_05812785.1| flagellar biosynthetic protein FliQ [Mesorhizobium opportunistum
WSM2075]
gi|259029603|gb|EEW30891.1| flagellar biosynthetic protein FliQ [Mesorhizobium opportunistum
WSM2075]
Length = 88
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 70/87 (80%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEAD L+I + A+WT+L++SAPV+ AM +GI IA +QALTQ+QE+TLTFVPKI+A+ +
Sbjct: 1 MNEADALDIVQYAVWTVLTASAPVVLVAMAVGIGIALIQALTQVQEITLTFVPKIVAIML 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
+ ++ PFIGGQIS+F ++ RIQ+
Sbjct: 61 VVALTGPFIGGQISAFTNVIFERIQNG 87
>gi|319403984|emb|CBI77572.1| Flagellar biosynthetic protein FliQ [Bartonella rochalimae ATCC
BAA-1498]
Length = 88
Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/88 (56%), Positives = 69/88 (78%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEAD +++ AA+WTIL++S P +F+AM GI+IA QALTQIQE+TLTF+PKII +F+
Sbjct: 1 MNEADAIDMVTAAIWTILTASGPAVFAAMSAGIIIALFQALTQIQEMTLTFIPKIIIIFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L +APF+GGQI +F LV +RI++
Sbjct: 61 VLAFTAPFVGGQIYAFTQLVYNRIETGF 88
>gi|319405427|emb|CBI79046.1| Flagellar biosynthetic protein FliQ [Bartonella sp. AR 15-3]
Length = 88
Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 49/88 (55%), Positives = 69/88 (78%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEAD +++ AA+WT+L++S P +F+AM GI+IA QALTQIQE+TLTF+PKII +F+
Sbjct: 1 MNEADAIDMVTAAIWTVLTASGPAVFAAMSTGIIIALFQALTQIQEMTLTFIPKIIIIFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L +APF+GGQI +F LV +RI++
Sbjct: 61 VLAFTAPFVGGQIYAFTQLVYNRIETGF 88
>gi|116250506|ref|YP_766344.1| flagellar biosynthesis protein FliQ [Rhizobium leguminosarum bv.
viciae 3841]
gi|218461406|ref|ZP_03501497.1| flagellar biosynthesis protein FliQ [Rhizobium etli Kim 5]
gi|218662877|ref|ZP_03518807.1| flagellar biosynthesis protein FliQ [Rhizobium etli IE4771]
gi|218671389|ref|ZP_03521059.1| flagellar biosynthesis protein FliQ [Rhizobium etli GR56]
gi|241203130|ref|YP_002974226.1| flagellar biosynthesis protein FliQ [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|115255154|emb|CAK06228.1| flagellar biosynthetic protein FliQ [Rhizobium leguminosarum bv.
viciae 3841]
gi|240857020|gb|ACS54687.1| flagellar biosynthetic protein FliQ [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 88
Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 70/87 (80%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEAD L++ +AA+WT+L ++ P + +AM +G++IA +QALTQ+QE TLTFVPKI+AV I
Sbjct: 1 MNEADALDLFQAAIWTVLIAAGPAVIAAMVVGLVIALIQALTQVQEATLTFVPKIVAVLI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
T+ ++APF+G QIS F LV SRIQS
Sbjct: 61 TVGVTAPFVGSQISIFTNLVFSRIQSG 87
>gi|190890388|ref|YP_001976930.1| flagellar biosynthesis transmembrane protein [Rhizobium etli CIAT
652]
gi|190695667|gb|ACE89752.1| flagellar biosynthesis transmembrane protein [Rhizobium etli CIAT
652]
gi|327193066|gb|EGE59978.1| flagellar biosynthesis transmembrane protein [Rhizobium etli
CNPAF512]
Length = 88
Score = 108 bits (269), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 70/87 (80%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEAD L++ +AA+WT+L ++ P + +AM +G++IA +QALTQ+QE TLTFVPKI+AV I
Sbjct: 1 MNEADALDLFQAAIWTVLIAAGPAVIAAMVVGLVIALIQALTQVQEATLTFVPKILAVLI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
T+ ++APFIG QIS F LV SRIQS
Sbjct: 61 TVGVTAPFIGSQISIFTNLVFSRIQSG 87
>gi|325291968|ref|YP_004277832.1| flagellar biosynthesis protein FliQ [Agrobacterium sp. H13-3]
gi|325059821|gb|ADY63512.1| flagellar biosynthesis protein FliQ [Agrobacterium sp. H13-3]
Length = 88
Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 69/87 (79%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEAD L+I +AA+WT+L ++ P + +AM +G+ IAF+QALTQ+QE+TLTFVPKI+ + I
Sbjct: 1 MNEADALDIMQAAVWTVLVAAGPAVLAAMIVGVAIAFIQALTQVQEMTLTFVPKIVTIMI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
L ++APF+G QI+ F LV SR+QS
Sbjct: 61 VLGVAAPFVGAQIALFSNLVFSRVQSG 87
>gi|209547952|ref|YP_002279869.1| flagellar biosynthesis protein FliQ [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209533708|gb|ACI53643.1| flagellar biosynthetic protein FliQ [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 88
Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 70/87 (80%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEAD L++ +AA+WT+L ++ P + +AM +G++IA +QALTQ+QE TLTFVPKI+AV I
Sbjct: 1 MNEADALDLFQAAIWTVLIAAGPAVIAAMVVGLIIALIQALTQVQEATLTFVPKIVAVLI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
T+ ++APF+G Q+S F LV SRIQS
Sbjct: 61 TVGVTAPFVGSQVSIFTNLVFSRIQSG 87
>gi|86356336|ref|YP_468228.1| flagellar biosynthesis protein FliQ [Rhizobium etli CFN 42]
gi|86280438|gb|ABC89501.1| flagellar biosynthesis transmembrane protein [Rhizobium etli CFN
42]
Length = 88
Score = 107 bits (267), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 69/87 (79%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEAD L++ +AA+WT+L +S P + +AM +G++IA +QALTQ+QE TLTFVPKI+AV +
Sbjct: 1 MNEADALDLFQAAIWTVLIASGPAVLAAMVVGLVIALIQALTQVQEATLTFVPKIVAVLV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
+ I+APF+G QIS F LV SRIQS
Sbjct: 61 VVGITAPFVGSQISIFTNLVFSRIQSG 87
>gi|254500261|ref|ZP_05112412.1| flagellar biosynthetic protein FliQ [Labrenzia alexandrii DFL-11]
gi|222436332|gb|EEE43011.1| flagellar biosynthetic protein FliQ [Labrenzia alexandrii DFL-11]
Length = 88
Score = 107 bits (267), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 67/87 (77%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNE D L++ R A+WTIL SAP + AM +GI IA LQALTQ+QE+TLTF+PKI+A+ +
Sbjct: 1 MNEVDALDLVRTAIWTILIGSAPAIIPAMIVGIGIALLQALTQVQEITLTFIPKIVAILV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
++I+ PFIGGQ+ + T++ SRI++
Sbjct: 61 MIVIAGPFIGGQMYALTTVIYSRIENG 87
>gi|15887925|ref|NP_353606.1| flagellar biosynthesis protein FliQ [Agrobacterium tumefaciens
str. C58]
gi|15155521|gb|AAK86391.1| flagellar biosynthetic protein [Agrobacterium tumefaciens str.
C58]
Length = 88
Score = 107 bits (266), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 68/87 (78%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEAD L+I +AA+WT+L ++ P + +AM +G+ IAF+QALTQ+QE+TLTFVPKI+ + I
Sbjct: 1 MNEADALDIMQAAVWTVLVAAGPAVLAAMIVGVAIAFIQALTQVQEMTLTFVPKIVTIMI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
L ++APF+G QI F LV SRIQS
Sbjct: 61 VLGVAAPFVGAQIVLFSNLVFSRIQSG 87
>gi|17988509|ref|NP_541142.1| flagellar biosynthesis protein FliQ [Brucella melitensis bv. 1
str. 16M]
gi|23500848|ref|NP_700288.1| flagellar biosynthesis protein FliQ [Brucella suis 1330]
gi|62317951|ref|YP_223804.1| flagellar biosynthesis protein FliQ [Brucella abortus bv. 1 str.
9-941]
gi|83269928|ref|YP_419219.1| flagellar biosynthesis protein FliQ [Brucella melitensis biovar
Abortus 2308]
gi|148558765|ref|YP_001257998.1| flagellar biosynthesis protein FliQ [Brucella ovis ATCC 25840]
gi|161621176|ref|YP_001595062.1| flagellar biosynthesis protein FliQ [Brucella canis ATCC 23365]
gi|163845451|ref|YP_001623106.1| flagellar biosynthesis protein FliQ [Brucella suis ATCC 23445]
gi|225628423|ref|ZP_03786457.1| flagellar biosynthetic protein FliQ [Brucella ceti str. Cudo]
gi|225686879|ref|YP_002734851.1| flagellar biosynthesis protein FliQ [Brucella melitensis ATCC
23457]
gi|237817496|ref|ZP_04596487.1| flagellar biosynthetic protein FliQ [Brucella abortus str. 2308
A]
gi|254691617|ref|ZP_05154871.1| flagellar biosynthesis protein FliQ [Brucella abortus bv. 6 str.
870]
gi|254695087|ref|ZP_05156915.1| flagellar biosynthesis protein FliQ [Brucella abortus bv. 3 str.
Tulya]
gi|254698183|ref|ZP_05160011.1| flagellar biosynthesis protein FliQ [Brucella abortus bv. 2 str.
86/8/59]
gi|254699257|ref|ZP_05161085.1| flagellar biosynthesis protein FliQ [Brucella suis bv. 5 str.
513]
gi|254702377|ref|ZP_05164205.1| flagellar biosynthesis protein FliQ [Brucella suis bv. 3 str.
686]
gi|254711213|ref|ZP_05173024.1| flagellar biosynthesis protein FliQ [Brucella pinnipedialis
B2/94]
gi|254711812|ref|ZP_05173623.1| flagellar biosynthesis protein FliQ [Brucella ceti M644/93/1]
gi|254714881|ref|ZP_05176692.1| flagellar biosynthesis protein FliQ [Brucella ceti M13/05/1]
gi|254720779|ref|ZP_05182590.1| flagellar biosynthesis protein FliQ [Brucella sp. 83/13]
gi|254731628|ref|ZP_05190206.1| flagellar biosynthesis protein FliQ [Brucella abortus bv. 4 str.
292]
gi|256015892|ref|YP_003105901.1| flagellar biosynthesis protein FliQ [Brucella microti CCM 4915]
gi|256030158|ref|ZP_05443772.1| flagellar biosynthesis protein FliQ [Brucella pinnipedialis
M292/94/1]
gi|256042860|ref|ZP_05445806.1| flagellar biosynthesis protein FliQ [Brucella melitensis bv. 1
str. Rev.1]
gi|256059810|ref|ZP_05450005.1| flagellar biosynthesis protein FliQ [Brucella neotomae 5K33]
gi|256112182|ref|ZP_05453103.1| flagellar biosynthesis protein FliQ [Brucella melitensis bv. 3
str. Ether]
gi|256158337|ref|ZP_05456241.1| flagellar biosynthesis protein FliQ [Brucella ceti M490/95/1]
gi|256252729|ref|ZP_05458265.1| flagellar biosynthesis protein FliQ [Brucella ceti B1/94]
gi|256256804|ref|ZP_05462340.1| flagellar biosynthesis protein FliQ [Brucella abortus bv. 9 str.
C68]
gi|256261984|ref|ZP_05464516.1| flagellar biosynthetic protein FliQ [Brucella melitensis bv. 2
str. 63/9]
gi|260166790|ref|ZP_05753601.1| flagellar biosynthesis protein FliQ [Brucella sp. F5/99]
gi|260544136|ref|ZP_05819957.1| flagellar biosynthetic protein FliQ [Brucella abortus NCTC 8038]
gi|260564097|ref|ZP_05834582.1| flagellar biosynthetic protein FliQ [Brucella melitensis bv. 1
str. 16M]
gi|260568720|ref|ZP_05839189.1| flagellar biosynthetic protein FliQ [Brucella suis bv. 4 str. 40]
gi|260757248|ref|ZP_05869596.1| flagellar biosynthetic protein FliQ [Brucella abortus bv. 6 str.
870]
gi|260759387|ref|ZP_05871735.1| flagellar biosynthetic protein FliQ [Brucella abortus bv. 4 str.
292]
gi|260762630|ref|ZP_05874962.1| flagellar biosynthetic protein FliQ [Brucella abortus bv. 2 str.
86/8/59]
gi|260883052|ref|ZP_05894666.1| flagellar biosynthetic protein FliQ [Brucella abortus bv. 9 str.
C68]
gi|261215438|ref|ZP_05929719.1| flagellar biosynthetic protein FliQ [Brucella abortus bv. 3 str.
Tulya]
gi|261216571|ref|ZP_05930852.1| flagellar biosynthetic protein FliQ [Brucella ceti M13/05/1]
gi|261219807|ref|ZP_05934088.1| flagellar biosynthetic protein FliQ [Brucella ceti B1/94]
gi|261318804|ref|ZP_05958001.1| flagellar biosynthetic protein FliQ [Brucella pinnipedialis
B2/94]
gi|261319441|ref|ZP_05958638.1| flagellar biosynthetic protein FliQ [Brucella ceti M644/93/1]
gi|261323790|ref|ZP_05962987.1| flagellar biosynthetic protein FliQ [Brucella neotomae 5K33]
gi|261749696|ref|ZP_05993405.1| flagellar biosynthetic protein FliQ [Brucella suis bv. 5 str.
513]
gi|261752940|ref|ZP_05996649.1| flagellar biosynthetic protein FliQ [Brucella suis bv. 3 str.
686]
gi|261756167|ref|ZP_05999876.1| flagellar biosynthetic protein FliQ [Brucella sp. F5/99]
gi|265985837|ref|ZP_06098572.1| flagellar biosynthetic protein FliQ [Brucella sp. 83/13]
gi|265987189|ref|ZP_06099746.1| flagellar biosynthetic protein FliQ [Brucella pinnipedialis
M292/94/1]
gi|265989295|ref|ZP_06101852.1| flagellar biosynthetic protein FliQ [Brucella melitensis bv. 1
str. Rev.1]
gi|265993609|ref|ZP_06106166.1| flagellar biosynthetic protein FliQ [Brucella melitensis bv. 3
str. Ether]
gi|265996852|ref|ZP_06109409.1| flagellar biosynthetic protein FliQ [Brucella ceti M490/95/1]
gi|294852962|ref|ZP_06793634.1| flagellar biosynthetic protein FliQ [Brucella sp. NVSL 07-0026]
gi|297250157|ref|ZP_06933858.1| flagellar biosynthetic protein FliQ [Brucella abortus bv. 5 str.
B3196]
gi|306845413|ref|ZP_07477987.1| flagellar biosynthetic protein FliQ [Brucella sp. BO1]
gi|17984301|gb|AAL53406.1| flagellar biosynthetic protein fliq [Brucella melitensis bv. 1
str. 16M]
gi|23464512|gb|AAN34293.1| flagellar biosynthesis protein FliQ [Brucella suis 1330]
gi|62198144|gb|AAX76443.1| FliQ, flagellar biosynthesis protein [Brucella abortus bv. 1 str.
9-941]
gi|82940202|emb|CAJ13258.1| Bacterial export protein FliQ, family 3:Flagellar biosynthesis
protein FliQ [Brucella melitensis biovar Abortus 2308]
gi|148370050|gb|ABQ62922.1| flagellar biosynthetic protein FliQ [Brucella ovis ATCC 25840]
gi|161337987|gb|ABX64291.1| flagellar biosynthetic protein FliQ [Brucella canis ATCC 23365]
gi|163676174|gb|ABY40284.1| flagellar biosynthetic protein FliQ [Brucella suis ATCC 23445]
gi|225616269|gb|EEH13317.1| flagellar biosynthetic protein FliQ [Brucella ceti str. Cudo]
gi|225642984|gb|ACO02897.1| flagellar biosynthetic protein FliQ [Brucella melitensis ATCC
23457]
gi|237787331|gb|EEP61548.1| flagellar biosynthetic protein FliQ [Brucella abortus str. 2308
A]
gi|255998552|gb|ACU50239.1| flagellar biosynthesis protein FliQ [Brucella microti CCM 4915]
gi|260097407|gb|EEW81281.1| flagellar biosynthetic protein FliQ [Brucella abortus NCTC 8038]
gi|260151740|gb|EEW86833.1| flagellar biosynthetic protein FliQ [Brucella melitensis bv. 1
str. 16M]
gi|260155385|gb|EEW90466.1| flagellar biosynthetic protein FliQ [Brucella suis bv. 4 str. 40]
gi|260669705|gb|EEX56645.1| flagellar biosynthetic protein FliQ [Brucella abortus bv. 4 str.
292]
gi|260673051|gb|EEX59872.1| flagellar biosynthetic protein FliQ [Brucella abortus bv. 2 str.
86/8/59]
gi|260677356|gb|EEX64177.1| flagellar biosynthetic protein FliQ [Brucella abortus bv. 6 str.
870]
gi|260872580|gb|EEX79649.1| flagellar biosynthetic protein FliQ [Brucella abortus bv. 9 str.
C68]
gi|260917045|gb|EEX83906.1| flagellar biosynthetic protein FliQ [Brucella abortus bv. 3 str.
Tulya]
gi|260918391|gb|EEX85044.1| flagellar biosynthetic protein FliQ [Brucella ceti B1/94]
gi|260921660|gb|EEX88228.1| flagellar biosynthetic protein FliQ [Brucella ceti M13/05/1]
gi|261292131|gb|EEX95627.1| flagellar biosynthetic protein FliQ [Brucella ceti M644/93/1]
gi|261298027|gb|EEY01524.1| flagellar biosynthetic protein FliQ [Brucella pinnipedialis
B2/94]
gi|261299770|gb|EEY03267.1| flagellar biosynthetic protein FliQ [Brucella neotomae 5K33]
gi|261736151|gb|EEY24147.1| flagellar biosynthetic protein FliQ [Brucella sp. F5/99]
gi|261739449|gb|EEY27375.1| flagellar biosynthetic protein FliQ [Brucella suis bv. 5 str.
513]
gi|261742693|gb|EEY30619.1| flagellar biosynthetic protein FliQ [Brucella suis bv. 3 str.
686]
gi|262551149|gb|EEZ07310.1| flagellar biosynthetic protein FliQ [Brucella ceti M490/95/1]
gi|262764479|gb|EEZ10511.1| flagellar biosynthetic protein FliQ [Brucella melitensis bv. 3
str. Ether]
gi|262999964|gb|EEZ12654.1| flagellar biosynthetic protein FliQ [Brucella melitensis bv. 1
str. Rev.1]
gi|263091468|gb|EEZ16004.1| flagellar biosynthetic protein FliQ [Brucella melitensis bv. 2
str. 63/9]
gi|264659386|gb|EEZ29647.1| flagellar biosynthetic protein FliQ [Brucella pinnipedialis
M292/94/1]
gi|264664429|gb|EEZ34690.1| flagellar biosynthetic protein FliQ [Brucella sp. 83/13]
gi|294818617|gb|EFG35617.1| flagellar biosynthetic protein FliQ [Brucella sp. NVSL 07-0026]
gi|297174026|gb|EFH33390.1| flagellar biosynthetic protein FliQ [Brucella abortus bv. 5 str.
B3196]
gi|306274156|gb|EFM55972.1| flagellar biosynthetic protein FliQ [Brucella sp. BO1]
gi|326411297|gb|ADZ68361.1| flagellar biosynthesis protein FliQ [Brucella melitensis M28]
gi|326554586|gb|ADZ89225.1| flagellar biosynthesis protein FliQ [Brucella melitensis M5-90]
Length = 88
Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 66/87 (75%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEAD L+I +A+WT+L++S P + +AM GI IA QALTQIQE+TLTFVPKII +F+
Sbjct: 1 MNEADALDIVNSAIWTVLTASGPAVLAAMLAGIGIALFQALTQIQEMTLTFVPKIIVIFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
L ++APF+G QI++F L SRI+
Sbjct: 61 VLALTAPFVGAQINAFTLLAYSRIEKG 87
>gi|153011502|ref|YP_001372716.1| flagellar biosynthesis protein FliQ [Ochrobactrum anthropi ATCC
49188]
gi|239834421|ref|ZP_04682749.1| flagellar biosynthetic protein FliQ [Ochrobactrum intermedium LMG
3301]
gi|151563390|gb|ABS16887.1| flagellar biosynthetic protein FliQ [Ochrobactrum anthropi ATCC
49188]
gi|239822484|gb|EEQ94053.1| flagellar biosynthetic protein FliQ [Ochrobactrum intermedium LMG
3301]
Length = 88
Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 65/87 (74%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEAD L+I +A+WT+L +S P + +AM GI IA QALTQIQE+TLTFVPKII +F+
Sbjct: 1 MNEADALDIVNSAIWTVLMASGPAVLAAMLAGIGIALFQALTQIQEMTLTFVPKIIVIFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
L ++APF+G QI+SF L SRI+
Sbjct: 61 VLALTAPFVGAQINSFTLLAYSRIEKG 87
>gi|319409163|emb|CBI82807.1| Flagellar biosynthetic protein FliQ [Bartonella schoenbuchensis
R1]
Length = 88
Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 68/87 (78%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEAD +++ AA+WTIL +S P + +AM +GI IA QALTQ+QE+TLTF+PKII +F+
Sbjct: 1 MNEADAIDMVTAAIWTILIASGPAVLAAMSIGICIALFQALTQVQEMTLTFIPKIIIIFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
L ++APFIGGQI +F LV +RI++
Sbjct: 61 VLALTAPFIGGQIYAFTQLVYNRIETG 87
>gi|319898662|ref|YP_004158755.1| flagellar biosynthetic protein FliQ [Bartonella clarridgeiae 73]
gi|319402626|emb|CBI76171.1| Flagellar biosynthetic protein FliQ [Bartonella clarridgeiae 73]
Length = 88
Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 68/87 (78%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEAD +++ AA+WTIL++S P + +AM G++IA QALTQIQE+TLTF+PKII +F+
Sbjct: 1 MNEADAIDMVTAAIWTILTASGPAVLAAMSAGVIIALFQALTQIQEMTLTFIPKIIIIFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
L +APF+GGQI +F LV +RI++
Sbjct: 61 VLAFTAPFVGGQIYAFTQLVYNRIETG 87
>gi|328545485|ref|YP_004305594.1| flagellar biosynthesis transmembrane protein [polymorphum gilvum
SL003B-26A1]
gi|326415226|gb|ADZ72289.1| Flagellar biosynthesis transmembrane protein [Polymorphum gilvum
SL003B-26A1]
Length = 88
Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 66/87 (75%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEAD L++ R+A+WTI+ SAP + AM +GI IA +QALTQ+QEVTLTF+PKI+A+ +
Sbjct: 1 MNEADALDLVRSAIWTIIVGSAPAIVPAMVVGIGIALMQALTQVQEVTLTFIPKIVAILV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
++I+ PFIG QI + LV RI++
Sbjct: 61 MIVIAGPFIGAQIYALTALVYGRIETG 87
>gi|319781659|ref|YP_004141135.1| flagellar biosynthetic protein FliQ [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317167547|gb|ADV11085.1| flagellar biosynthetic protein FliQ [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 88
Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 68/87 (78%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEAD L+I + A+WT+L +SAPV+ AM +GI IA +QALTQ+QE+TLTFVPKI+A+ +
Sbjct: 1 MNEADALDIVQYAVWTVLVASAPVVLVAMVVGIGIALIQALTQVQEITLTFVPKIVAIML 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
+ ++ PFIG QIS+F ++ RIQ+
Sbjct: 61 VVALTGPFIGSQISAFTNVIFERIQNG 87
>gi|121602368|ref|YP_989377.1| flagellar biosynthesis protein FliQ [Bartonella bacilliformis
KC583]
gi|120614545|gb|ABM45146.1| flagellar biosynthetic protein FliQ [Bartonella bacilliformis
KC583]
Length = 88
Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 68/87 (78%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEAD +++ AA+WT+L +S P + +AM +GI+IA QALTQIQE+TLTF+PKII +F+
Sbjct: 1 MNEADAIDMVTAAIWTVLIASGPAVLAAMSVGIIIALFQALTQIQEMTLTFIPKIIVIFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
L +APF+GGQI +F LV +RI++
Sbjct: 61 VLAFTAPFVGGQIYAFTQLVYNRIEAG 87
>gi|254706502|ref|ZP_05168330.1| flagellar biosynthesis protein FliQ [Brucella pinnipedialis
M163/99/10]
gi|261313956|ref|ZP_05953153.1| flagellar biosynthetic protein FliQ [Brucella pinnipedialis
M163/99/10]
gi|261302982|gb|EEY06479.1| flagellar biosynthetic protein FliQ [Brucella pinnipedialis
M163/99/10]
Length = 88
Score = 104 bits (259), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 65/87 (74%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNE D L+I +A+WT+L++S P + +AM GI IA QALTQIQE+TLTFVPKII +F+
Sbjct: 1 MNEVDALDIVNSAIWTVLTASGPAVLAAMLAGIGIALFQALTQIQEMTLTFVPKIIVIFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
L ++APF+G QI++F L SRI+
Sbjct: 61 VLALTAPFVGAQINAFTLLAYSRIEKG 87
>gi|296445190|ref|ZP_06887150.1| flagellar biosynthetic protein FliQ [Methylosinus trichosporium
OB3b]
gi|296257364|gb|EFH04431.1| flagellar biosynthetic protein FliQ [Methylosinus trichosporium
OB3b]
Length = 88
Score = 104 bits (259), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 68/87 (78%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEAD LEI + A++T+L S PV+ +AM +G++IA LQALTQ+QE+TLTFVPKIIA+F+
Sbjct: 1 MNEADALEIMQRAIFTVLVVSGPVVGAAMLVGVVIALLQALTQVQEMTLTFVPKIIAIFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
L +SAPFIG QIS+F ++I+
Sbjct: 61 ALGLSAPFIGSQISAFTDYAYAKIEKG 87
>gi|217976246|ref|YP_002360393.1| flagellar biosynthesis protein FliQ [Methylocella silvestris BL2]
gi|217501622|gb|ACK49031.1| flagellar biosynthetic protein FliQ [Methylocella silvestris BL2]
Length = 88
Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 63/87 (72%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEAD LE+ R+A+WTI+ S P + +AMF+G++IA LQALTQIQE TLTFVPKI+ +F+
Sbjct: 1 MNEADALELIRSAIWTIIVGSGPPVAAAMFVGLIIALLQALTQIQETTLTFVPKIVVIFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
L PFIG QI +F V RI+
Sbjct: 61 VLSFGGPFIGAQIFAFTEHVYGRIEKG 87
>gi|254473481|ref|ZP_05086878.1| flagellar biosynthetic protein FliQ [Pseudovibrio sp. JE062]
gi|211957597|gb|EEA92800.1| flagellar biosynthetic protein FliQ [Pseudovibrio sp. JE062]
Length = 88
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 45/87 (51%), Positives = 65/87 (74%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEAD L+I R A+WT+++++ P + AMF+G++IA QALTQIQE+TLTF+PKI+ +FI
Sbjct: 1 MNEADALDIVRTAIWTVITATGPAVAGAMFVGLIIALFQALTQIQEMTLTFIPKIVVIFI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
+ ++ PFIG QI S +V RI+
Sbjct: 61 LIAMTGPFIGSQIFSLTEMVYGRIEHG 87
>gi|110632634|ref|YP_672842.1| flagellar biosynthesis protein FliQ [Mesorhizobium sp. BNC1]
gi|110283618|gb|ABG61677.1| flagellar biosynthetic protein FliQ [Chelativorans sp. BNC1]
Length = 88
Score = 100 bits (250), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 45/87 (51%), Positives = 66/87 (75%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEAD L+I + A+WT+L +S P + AM +G+ IA +QALTQ+QE+TLTFVPKI+A+ +
Sbjct: 1 MNEADALDIVQYAIWTVLLASGPAVIVAMVVGVGIALVQALTQVQEITLTFVPKIVAIML 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
+ +S PF+G QISSF ++ RI++
Sbjct: 61 AIALSGPFVGTQISSFTNVIFQRIENG 87
>gi|218680427|ref|ZP_03528324.1| flagellar biosynthesis protein FliQ [Rhizobium etli CIAT 894]
Length = 88
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 69/87 (79%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEAD L++ +AA+WT+L +S P + +AM +G++IA +QALTQ+QE TLTFVPKI+AV +
Sbjct: 1 MNEADALDLFQAAIWTVLIASGPAVLAAMVVGLVIALIQALTQVQEATLTFVPKIVAVLV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
+ ++APF+G Q+S F LV SRIQS
Sbjct: 61 VVGVTAPFVGSQVSIFTNLVFSRIQSG 87
>gi|188579931|ref|YP_001923376.1| flagellar biosynthesis protein FliQ [Methylobacterium populi
BJ001]
gi|179343429|gb|ACB78841.1| flagellar biosynthetic protein FliQ [Methylobacterium populi
BJ001]
Length = 88
Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 64/87 (73%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNE D LE+ R+A+WT+L ++ P + +AM +GI +A LQALTQ+QEVTLTFVPKI+A+ +
Sbjct: 1 MNEVDALELVRSAIWTVLVAAGPSVGAAMLVGIAVALLQALTQVQEVTLTFVPKIVAILL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
++++ F+G QI +F + RI +
Sbjct: 61 VMLVTGTFVGSQIYAFAEMTYGRIATG 87
>gi|163850129|ref|YP_001638172.1| flagellar biosynthesis protein FliQ [Methylobacterium extorquens
PA1]
gi|218528733|ref|YP_002419549.1| flagellar biosynthesis protein FliQ [Methylobacterium
chloromethanicum CM4]
gi|240137263|ref|YP_002961732.1| putative outer proteins translocation protein S [Methylobacterium
extorquens AM1]
gi|254559274|ref|YP_003066369.1| outer proteins translocation protein S [Methylobacterium
extorquens DM4]
gi|163661734|gb|ABY29101.1| flagellar biosynthetic protein FliQ [Methylobacterium extorquens
PA1]
gi|218521036|gb|ACK81621.1| flagellar biosynthetic protein FliQ [Methylobacterium
chloromethanicum CM4]
gi|240007229|gb|ACS38455.1| Putative outer proteins translocation protein S [Methylobacterium
extorquens AM1]
gi|254266552|emb|CAX22316.1| Putative outer proteins translocation protein S [Methylobacterium
extorquens DM4]
Length = 88
Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 64/87 (73%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNE D LE+ R+A+WT++ ++ P + +AM +GI +A LQALTQIQEVTLTFVPKI+A+ +
Sbjct: 1 MNEVDALELVRSAIWTVIVAAGPSVGAAMLVGIAVALLQALTQIQEVTLTFVPKIVAILL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
++++ F+G QI +F + RI +
Sbjct: 61 VMLVTGTFVGAQIYAFAEMTYGRIATG 87
>gi|115523199|ref|YP_780110.1| flagellar biosynthesis protein FliQ [Rhodopseudomonas palustris
BisA53]
gi|115517146|gb|ABJ05130.1| flagellar biosynthetic protein FliQ [Rhodopseudomonas palustris
BisA53]
Length = 88
Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 45/87 (51%), Positives = 64/87 (73%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNE D L+IA+ A+WTI+ +S P + +AMF+GI IA LQALTQ+QE+TLTF+PKI+ + I
Sbjct: 1 MNERDALDIAQQAVWTIIVASGPAVAAAMFVGIAIALLQALTQVQEMTLTFIPKIVVMLI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
+ +S F+G I +F L+ SRI+
Sbjct: 61 VVAVSGSFMGAHIYAFTELLYSRIEHG 87
>gi|170748119|ref|YP_001754379.1| flagellar biosynthesis protein FliQ [Methylobacterium
radiotolerans JCM 2831]
gi|170654641|gb|ACB23696.1| flagellar biosynthetic protein FliQ [Methylobacterium
radiotolerans JCM 2831]
Length = 88
Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 65/87 (74%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNE D LE+ R+A+WTI+ +S P + +AM +GILIA QALTQIQEVTLTFVPKI+ V I
Sbjct: 1 MNEIDALELVRSAIWTIIVASGPAVGAAMVVGILIALFQALTQIQEVTLTFVPKIVVVLI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
+I++ F+GGQI +F +V RI S
Sbjct: 61 VMIVTGSFVGGQIYAFTEMVYGRIVSG 87
>gi|304392487|ref|ZP_07374427.1| flagellar biosynthetic protein FliQ [Ahrensia sp. R2A130]
gi|303295117|gb|EFL89477.1| flagellar biosynthetic protein FliQ [Ahrensia sp. R2A130]
Length = 88
Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 44/87 (50%), Positives = 63/87 (72%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEAD L++ + A+W I+ +SAP + +AM +GI IA LQALTQ+QEVTLTFVPKI+A+ +
Sbjct: 1 MNEADALQLVQQAIWAIIVASAPAVTAAMVVGIAIALLQALTQVQEVTLTFVPKIMAIML 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
L++ A F+G Q+ S T + I+
Sbjct: 61 ALLLGATFMGAQLGSLTTTIFDSIERG 87
>gi|182680451|ref|YP_001834597.1| flagellar biosynthesis protein FliQ [Beijerinckia indica subsp.
indica ATCC 9039]
gi|182636334|gb|ACB97108.1| flagellar biosynthetic protein FliQ [Beijerinckia indica subsp.
indica ATCC 9039]
Length = 88
Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/85 (55%), Positives = 67/85 (78%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEAD LE+ R+A+WT+L + P + +AM +G++IA QALTQIQE+TLTFVPKI+ +F+
Sbjct: 1 MNEADALELIRSAIWTMLVVAGPAVAAAMAIGLIIALFQALTQIQEMTLTFVPKIVVMFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
L+++APF+G QI SF + +RIQ
Sbjct: 61 ILMLAAPFMGSQIYSFTERIYARIQ 85
>gi|323136995|ref|ZP_08072075.1| export protein FliQ family 3 [Methylocystis sp. ATCC 49242]
gi|322397756|gb|EFY00278.1| export protein FliQ family 3 [Methylocystis sp. ATCC 49242]
Length = 88
Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/87 (51%), Positives = 63/87 (72%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEAD LEI + TIL S P++ +AM +G+++A +QALTQ+QE+TLTFVPKI+A+
Sbjct: 1 MNEADALEIVHRTIVTILLVSGPLVGAAMVVGVIVALVQALTQVQEMTLTFVPKIVAMLA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
L +SAPFIG +I + V SRI++
Sbjct: 61 VLSLSAPFIGSKIYALAQFVYSRIETG 87
>gi|218506520|ref|ZP_03504398.1| flagellar biosynthesis protein FliQ [Rhizobium etli Brasil 5]
Length = 70
Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/70 (60%), Positives = 59/70 (84%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEAD L++ +AA+WT+L ++ P + SAM +G++IA +QALTQ+QE TLTFVPKI+AV I
Sbjct: 1 MNEADALDLFQAAIWTVLIAAGPAVISAMVVGLVIALIQALTQVQEATLTFVPKILAVLI 60
Query: 61 TLIISAPFIG 70
T+ ++APFIG
Sbjct: 61 TVGVTAPFIG 70
>gi|90422630|ref|YP_531000.1| flagellar biosynthesis protein FliQ [Rhodopseudomonas palustris
BisB18]
gi|90104644|gb|ABD86681.1| flagellar biosynthetic protein FliQ [Rhodopseudomonas palustris
BisB18]
Length = 88
Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 61/87 (70%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNE D L+I + A+WTI+ S P + +AM +G+ IA LQALTQ+QE+TLTF+PKI+ + I
Sbjct: 1 MNERDALDIVQQAIWTIIVVSGPAVGAAMAVGVAIALLQALTQVQEMTLTFIPKIVVMLI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
+ +S F+G I +F L+ SRI+
Sbjct: 61 VVAVSGSFMGAHIYAFTELLYSRIEHG 87
>gi|27381963|ref|NP_773492.1| flagellar biosynthesis protein FliQ [Bradyrhizobium japonicum
USDA 110]
gi|27355133|dbj|BAC52117.1| flagellar biosynthetic protein [Bradyrhizobium japonicum USDA
110]
Length = 88
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 63/87 (72%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNE D L+I +AA+WTI+ +S P + +AM +G +IA +QALTQIQEVTLTFVPKII + +
Sbjct: 1 MNERDALDIVQAAIWTIIVASGPAVGAAMLVGTIIALIQALTQIQEVTLTFVPKIIVILV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
+ IS FIG +S+F +V S I+
Sbjct: 61 VVAISGSFIGAHLSTFTEMVYSHIERG 87
>gi|209963541|ref|YP_002296456.1| flagellar biosynthesis protein FliQ [Rhodospirillum centenum SW]
gi|209957007|gb|ACI97643.1| flagellar biosynthesis protein FliQ [Rhodospirillum centenum SW]
Length = 88
Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 64/87 (73%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEADV E+ RA +W + ++ PVL A+ +G I+ LQALTQ+QE TL+FVPKI+A+ +
Sbjct: 1 MNEADVFELVRAGIWAAVWAAGPVLAVALLVGFGISLLQALTQLQEATLSFVPKIVAMLV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
T++++ PF+ G +++F V++RI +
Sbjct: 61 TIVLALPFMYGVLATFTEQVVARIGGA 87
>gi|158422277|ref|YP_001523569.1| flagellar biosynthesis protein FliQ [Azorhizobium caulinodans ORS
571]
gi|158329166|dbj|BAF86651.1| flagellar biosynthesis protein [Azorhizobium caulinodans ORS 571]
Length = 88
Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 61/87 (70%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEAD L++ R A+WTIL ++ P + +AM +GI IA +QALTQIQE TLTFVPKIIAV +
Sbjct: 1 MNEADALDVVRNAIWTILLAAGPAVAAAMLVGIFIALIQALTQIQEATLTFVPKIIAVLV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
++ F+G QI +F + RI S
Sbjct: 61 VCALTGSFMGSQIMAFTEEIYGRIASG 87
>gi|114706622|ref|ZP_01439523.1| flagellar biosynthesis protein Q [Fulvimarina pelagi HTCC2506]
gi|114538014|gb|EAU41137.1| flagellar biosynthesis protein Q [Fulvimarina pelagi HTCC2506]
Length = 92
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 65/88 (73%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN+AD ++I + A+WTI+++ AP + +AM +GI+IA QALTQIQE+TLTFVPKI+A+F+
Sbjct: 1 MNQADAIDIVQEAIWTIITACAPAVAAAMIVGIVIALFQALTQIQEMTLTFVPKILAIFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+ I+A F G Q+ +F RI++
Sbjct: 61 VIAITASFTGAQVYAFTQEAYGRIETGF 88
>gi|307945652|ref|ZP_07660988.1| flagellar biosynthetic protein FliQ [Roseibium sp. TrichSKD4]
gi|307771525|gb|EFO30750.1| flagellar biosynthetic protein FliQ [Roseibium sp. TrichSKD4]
Length = 88
Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 59/76 (77%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +VL++AR +WT++ SAPV+ + +G++IA QALTQIQE+TL FVPKI+A+F+
Sbjct: 1 MTGGEVLDLAREGVWTMIFISAPVMIIGLLVGVVIALFQALTQIQEMTLVFVPKILAIFV 60
Query: 61 TLIISAPFIGGQISSF 76
TL++S PF+G ++SF
Sbjct: 61 TLLLSLPFMGQLLASF 76
>gi|154253015|ref|YP_001413839.1| flagellar biosynthetic protein FliQ [Parvibaculum lavamentivorans
DS-1]
gi|154156965|gb|ABS64182.1| flagellar biosynthetic protein FliQ [Parvibaculum lavamentivorans
DS-1]
Length = 87
Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 64/84 (76%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ +VL++AR A++ L SAP++ A+ +G+ IA LQALTQ+QE+TL FVPKI+A+F+
Sbjct: 1 MSGPEVLDLARQAIYVQLIVSAPMMAVALLVGLAIALLQALTQVQEMTLVFVPKIVAIFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
T++IS PF+ +S F+TLV +I
Sbjct: 61 TMLISLPFMAQALSGFMTLVAQKI 84
>gi|197104396|ref|YP_002129773.1| flagellar biosynthesis protein FliQ [Phenylobacterium zucineum
HLK1]
gi|196477816|gb|ACG77344.1| flagellar biosynthesis protein FliQ [Phenylobacterium zucineum
HLK1]
Length = 87
Score = 84.0 bits (206), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 59/86 (68%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN A+VL++ R A+W + SAPVL + +G+ I LQALTQIQE TL + PKI+A+FI
Sbjct: 1 MNGAEVLDVGRDAIWLTIQLSAPVLIVGLIVGVGIGLLQALTQIQEATLVYAPKIVAIFI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
+L+I P +G +S F+ + +RI +
Sbjct: 61 SLLIFLPLMGALMSGFMRHIAARIAA 86
>gi|209884538|ref|YP_002288395.1| flagellar biosynthetic protein FliQ [Oligotropha carboxidovorans
OM5]
gi|209872734|gb|ACI92530.1| flagellar biosynthetic protein FliQ [Oligotropha carboxidovorans
OM5]
Length = 87
Score = 84.0 bits (206), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 61/84 (72%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN +VLE+AR A+WT++ +APVL + +G+ I+ +QALTQIQE TL FVPKI+AVF+
Sbjct: 1 MNGLEVLEVARDAIWTMVLVAAPVLLVGLIVGVAISLVQALTQIQEQTLVFVPKILAVFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
TL+I+ PF+ + + + SRI
Sbjct: 61 TLLIALPFMADAMHGQMMRISSRI 84
>gi|114570482|ref|YP_757162.1| flagellar biosynthesis protein FliQ [Maricaulis maris MCS10]
gi|114340944|gb|ABI66224.1| flagellar biosynthetic protein FliQ [Maricaulis maris MCS10]
Length = 87
Score = 84.0 bits (206), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 61/87 (70%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +VL+ AR A+W +L+ +AP++ + +G+ IA QALTQ+QE+TL FVPKIIA+F+
Sbjct: 1 MTGPEVLDFAREAIWLMLAMAAPIMLVGLAVGVTIALFQALTQVQEMTLVFVPKIIAIFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
L++ P +GG ++ F+ ++ RI +
Sbjct: 61 ALLLFLPLMGGLMAGFMAMIFDRIANP 87
>gi|306841282|ref|ZP_07473993.1| flagellar biosynthesis protein FliQ [Brucella sp. BO2]
gi|306288684|gb|EFM60015.1| flagellar biosynthesis protein FliQ [Brucella sp. BO2]
Length = 72
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/71 (54%), Positives = 53/71 (74%)
Query: 17 ILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSF 76
+L++S P + +AM GI IA QALTQIQE+TLTFVPKII +F+ L ++APF+G QI++F
Sbjct: 1 MLTASGPAVLAAMLAGIGIALFQALTQIQEMTLTFVPKIIVIFVVLALTAPFVGAQINAF 60
Query: 77 VTLVLSRIQSS 87
L SRI+
Sbjct: 61 TLLAYSRIEKG 71
>gi|254292630|ref|YP_003058653.1| flagellar biosynthesis protein FliQ [Hirschia baltica ATCC 49814]
gi|254041161|gb|ACT57956.1| flagellar biosynthetic protein FliQ [Hirschia baltica ATCC 49814]
Length = 87
Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 61/86 (70%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M A+VL++ R A+W ++ + PV+ + + +G++IA +QALTQ+QE+TL FVPKI+A+F+
Sbjct: 1 MTGAEVLDLGRDALWATVAMATPVMVAGLVVGVVIALMQALTQVQEMTLVFVPKILAIFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
TL++ P +G ++ F + +RI
Sbjct: 61 TLLLFLPMMGATLAGFSDSIFARIAG 86
>gi|312115274|ref|YP_004012870.1| flagellar biosynthetic protein FliQ [Rhodomicrobium vannielii
ATCC 17100]
gi|311220403|gb|ADP71771.1| flagellar biosynthetic protein FliQ [Rhodomicrobium vannielii
ATCC 17100]
Length = 88
Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 60/87 (68%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN+AD +++ ++A+W ++ +S P++ +AM +GI I+ QALTQIQE TLTF+PKI+ VF+
Sbjct: 1 MNQADAMDLVKSAIWVVILASGPMIGAAMAVGIAISLFQALTQIQEATLTFIPKIVTVFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
+++A FIG + SRI+
Sbjct: 61 VAMLTASFIGSVLLGISEQAYSRIEHG 87
>gi|254470264|ref|ZP_05083668.1| flagellar biosynthetic protein FliQ [Pseudovibrio sp. JE062]
gi|211960575|gb|EEA95771.1| flagellar biosynthetic protein FliQ [Pseudovibrio sp. JE062]
Length = 88
Score = 80.5 bits (197), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 57/76 (75%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M A+VL+IA +WT++ SAPV+ + +G+++A QALTQIQE TL FVPKI+++FI
Sbjct: 1 MTGAEVLDIASEGIWTLILVSAPVMLIGLLVGVIVALFQALTQIQEQTLVFVPKILSIFI 60
Query: 61 TLIISAPFIGGQISSF 76
L+++ PF+G ++SF
Sbjct: 61 ALLVTLPFMGELMNSF 76
>gi|118588698|ref|ZP_01546106.1| flagellar biosynthesis protein Q [Stappia aggregata IAM 12614]
gi|118438684|gb|EAV45317.1| flagellar biosynthesis protein Q [Stappia aggregata IAM 12614]
Length = 88
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 62/87 (71%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +VL++AR +WT++ + PV+ + +G++IA QALTQIQE+TL FVPKI+A+F+
Sbjct: 1 MTGGEVLDLAREGVWTMILVAGPVMIVGLLVGVVIALFQALTQIQEMTLVFVPKILAIFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
T++IS PF+ + +F++ V I ++
Sbjct: 61 TILISLPFMSQVLEAFMSRVAEMILTT 87
>gi|92116948|ref|YP_576677.1| flagellar biosynthesis protein FliQ [Nitrobacter hamburgensis
X14]
gi|91799842|gb|ABE62217.1| flagellar biosynthetic protein FliQ [Nitrobacter hamburgensis
X14]
Length = 87
Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 61/84 (72%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M A+ L++AR A+WTI+ S P+L + +G++I+ +QALTQIQE TL FVPKI+A+F+
Sbjct: 1 MTGAETLDVARDAIWTIVLVSGPLLGVGLIVGVVISLVQALTQIQEQTLVFVPKILAIFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
TL+++ PF+ + + + + SRI
Sbjct: 61 TLVLALPFMADALHAEMMRISSRI 84
>gi|83858792|ref|ZP_00952314.1| flagellar biosynthesis protein [Oceanicaulis alexandrii HTCC2633]
gi|83853615|gb|EAP91467.1| flagellar biosynthesis protein [Oceanicaulis alexandrii HTCC2633]
Length = 87
Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 57/87 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +VL+I A+W +L +APV+ + +G+LIA QALTQ+QE+TL FVPKII +F+
Sbjct: 1 MTAGEVLDIGAEAIWVMLGMAAPVMLIGLAVGVLIALFQALTQVQEMTLVFVPKIIVIFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
L+I P +G ++ F+ + RI +
Sbjct: 61 ALLIFLPMMGALLNGFMQTIADRIVAG 87
>gi|75675328|ref|YP_317749.1| flagellar biosynthesis protein FliQ [Nitrobacter winogradskyi
Nb-255]
gi|74420198|gb|ABA04397.1| Flagellar biosynthesis protein FliQ [Nitrobacter winogradskyi
Nb-255]
Length = 87
Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 60/84 (71%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M A+ L++AR A+WTI+ S P+L + +G+ I+ +QALTQIQE TL FVPKI+A+F+
Sbjct: 1 MTGAETLDVARDAIWTIVLVSGPLLGVGLIVGVAISLVQALTQIQEQTLVFVPKILAIFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
TL+++ PF+ + + + + SRI
Sbjct: 61 TLVLALPFMADALHAEMLRISSRI 84
>gi|85716545|ref|ZP_01047515.1| flagellar biosynthesis protein [Nitrobacter sp. Nb-311A]
gi|85696546|gb|EAQ34434.1| flagellar biosynthesis protein [Nitrobacter sp. Nb-311A]
Length = 105
Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 60/84 (71%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M A+ L++AR A+WTI+ S P+L + +G+ I+ +QALTQIQE TL FVPKI+A+F+
Sbjct: 19 MTGAETLDVARDAIWTIVLVSGPLLGVGLIVGVAISLVQALTQIQEQTLVFVPKILAIFV 78
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
T++++ PF+ + + + + SRI
Sbjct: 79 TMVLALPFMADALHAEMIRISSRI 102
>gi|163744321|ref|ZP_02151681.1| flagellar biosynthesis protein Q [Oceanibulbus indolifex HEL-45]
gi|161381139|gb|EDQ05548.1| flagellar biosynthesis protein Q [Oceanibulbus indolifex HEL-45]
Length = 89
Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 57/87 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M E +I +W +L +S PVL A+ +G++IAF QALTQIQE+TLTFVPKI+ +F+
Sbjct: 1 MTETQTYDIISDTVWAVLLASGPVLGVALGIGLVIAFFQALTQIQEMTLTFVPKIVMIFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
TL+++ PF+ + + V +Q+
Sbjct: 61 TLLVATPFMYATLKNLSDTVFDLVQNG 87
>gi|163794131|ref|ZP_02188104.1| Flagellar biosynthesis protein FliQ [alpha proteobacterium
BAL199]
gi|159180745|gb|EDP65264.1| Flagellar biosynthesis protein FliQ [alpha proteobacterium
BAL199]
Length = 88
Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 58/84 (69%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M E D L IAR A+ T+L+ S P++ A+ +G+ IA QALTQ+QE+TL FVPKI+ VF
Sbjct: 1 MTEEDALSIARDAVLTLLTMSGPIMAVALTVGLTIALFQALTQLQEMTLVFVPKIMVVFA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
+L++ PF+ QIS+F + +I
Sbjct: 61 SLMLLLPFMLAQISAFFEGIADKI 84
>gi|328543168|ref|YP_004303277.1| flagellar biosynthesis protein Q [polymorphum gilvum SL003B-26A1]
gi|326412914|gb|ADZ69977.1| Flagellar biosynthesis protein Q [Polymorphum gilvum SL003B-26A1]
Length = 88
Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 60/77 (77%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +VL++AR +WT++ SAP++ + +G++IA QALTQIQE+TL FVPKI+A+F+
Sbjct: 1 MTGPEVLDVAREGVWTLILVSAPIMVVGLVVGVVIALFQALTQIQEMTLVFVPKILAIFV 60
Query: 61 TLIISAPFIGGQISSFV 77
T+I++ PF+G +++F+
Sbjct: 61 TMIVTLPFMGQLLAAFM 77
>gi|84502403|ref|ZP_01000539.1| hypothetical protein OB2597_20346 [Oceanicola batsensis HTCC2597]
gi|84389215|gb|EAQ02012.1| hypothetical protein OB2597_20346 [Oceanicola batsensis HTCC2597]
Length = 89
Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 55/86 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M E D EI T+L +S+P+L A+ +G++IAF QALTQIQE+TLTFVPKI A+F+
Sbjct: 1 MTETDAYEILSDTFLTVLIASSPILGVALVVGLVIAFFQALTQIQEMTLTFVPKIAAIFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
L+++ P I + S V I S
Sbjct: 61 VLLVATPLIYATVKSLSDQVFDLISS 86
>gi|299131773|ref|ZP_07024968.1| flagellar biosynthetic protein FliQ [Afipia sp. 1NLS2]
gi|298591910|gb|EFI52110.1| flagellar biosynthetic protein FliQ [Afipia sp. 1NLS2]
Length = 87
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 61/84 (72%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +VLE+AR ++WTI+ SAPVL + +G+ I+ +QALTQIQE TL FVPKI+AVFI
Sbjct: 1 MTGPEVLEVARDSIWTIVLVSAPVLLVGLVVGVAISLVQALTQIQEQTLVFVPKILAVFI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
TL+++ PF+ + S + + SRI
Sbjct: 61 TLLVALPFMADAMHSHMMRISSRI 84
>gi|254504458|ref|ZP_05116609.1| flagellar biosynthetic protein FliQ [Labrenzia alexandrii DFL-11]
gi|222440529|gb|EEE47208.1| flagellar biosynthetic protein FliQ [Labrenzia alexandrii DFL-11]
Length = 90
Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 56/77 (72%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +VL++AR+A+W ++ + P + + +G++IA QALTQIQE+TL FVPKI+A+F+
Sbjct: 1 MTGPEVLDLARSAVWAMILIAGPTMVIGLLVGVIIALFQALTQIQEMTLVFVPKILAIFV 60
Query: 61 TLIISAPFIGGQISSFV 77
TL++S PF+ + F+
Sbjct: 61 TLLLSLPFMSQVLEGFM 77
>gi|167645347|ref|YP_001683010.1| flagellar biosynthesis protein FliQ [Caulobacter sp. K31]
gi|167347777|gb|ABZ70512.1| flagellar biosynthetic protein FliQ [Caulobacter sp. K31]
Length = 87
Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 53/86 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M A+VL++ R A+W L AP+L + +G+ I QALTQIQE TL + PKI+A+F+
Sbjct: 1 MTGAEVLDVGRDAIWLTLQLCAPILLVGLVVGVAIGLFQALTQIQEATLVYAPKIVAIFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
L++ P +G +S F+ + +I
Sbjct: 61 ALLLFLPLMGALMSGFMKEIAGKIAG 86
>gi|225375340|ref|ZP_03752561.1| hypothetical protein ROSEINA2194_00965 [Roseburia inulinivorans
DSM 16841]
gi|225212829|gb|EEG95183.1| hypothetical protein ROSEINA2194_00965 [Roseburia inulinivorans
DSM 16841]
Length = 90
Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 58/83 (69%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
+ E VL+IA+ A++ I+ SAPVL ++ +G++I+ Q +T IQE TLTFVPKI+AVFI
Sbjct: 2 ITEGQVLDIAKDAIYYIIICSAPVLIISLVVGLIISIFQTVTSIQEQTLTFVPKIVAVFI 61
Query: 61 TLIISAPFIGGQISSFVTLVLSR 83
L++ +I Q+S FVT + S
Sbjct: 62 GLMVCGSWILNQLSEFVTTLWSN 84
>gi|83944177|ref|ZP_00956633.1| flagellar biosynthesis protein [Sulfitobacter sp. EE-36]
gi|83955122|ref|ZP_00963778.1| flagellar biosynthesis protein [Sulfitobacter sp. NAS-14.1]
gi|83840451|gb|EAP79624.1| flagellar biosynthesis protein [Sulfitobacter sp. NAS-14.1]
gi|83845044|gb|EAP82925.1| flagellar biosynthesis protein [Sulfitobacter sp. EE-36]
Length = 89
Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/69 (57%), Positives = 49/69 (71%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ + EI R + L SAPVL A+ +G+ IAF QALTQIQE+TLTFVPKI A+F+
Sbjct: 1 MDSVTIYEIIRQTLTVTLIGSAPVLVVALGVGLAIAFFQALTQIQEMTLTFVPKIAAIFV 60
Query: 61 TLIISAPFI 69
TL IS PFI
Sbjct: 61 TLAISIPFI 69
>gi|288962709|ref|YP_003453003.1| FliQ protein [Azospirillum sp. B510]
gi|288914975|dbj|BAI76459.1| FliQ protein [Azospirillum sp. B510]
Length = 88
Score = 74.7 bits (182), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 58/76 (76%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN+ADVLE+ R +WT L +AP L A+ +G+ I+ +QALTQ+QE+TLTFVPKI+A+ +
Sbjct: 1 MNQADVLEVLRGGIWTTLLVAAPPLIVAVVVGVGISLVQALTQVQEMTLTFVPKIVAILV 60
Query: 61 TLIISAPFIGGQISSF 76
+++ PF+ G ++++
Sbjct: 61 VTVLALPFMYGALATY 76
>gi|320354333|ref|YP_004195672.1| flagellar biosynthetic protein FliQ [Desulfobulbus propionicus
DSM 2032]
gi|320122835|gb|ADW18381.1| flagellar biosynthetic protein FliQ [Desulfobulbus propionicus
DSM 2032]
Length = 89
Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 62/86 (72%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ V+ I R A+ TIL +SAP+L +AM +G++I+ QA TQI E T+TF+PKI+AVFI
Sbjct: 1 MSPEAVIHIGRKAVETILLTSAPMLIAAMVIGLIISIFQAATQINEQTMTFIPKIVAVFI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
TL+I P+I + +F T ++++I +
Sbjct: 61 TLLIFGPWIMELLITFTTGIINQIAT 86
>gi|170744549|ref|YP_001773204.1| flagellar biosynthesis protein FliQ [Methylobacterium sp. 4-46]
gi|168198823|gb|ACA20770.1| export protein FliQ family 3 [Methylobacterium sp. 4-46]
Length = 88
Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/87 (50%), Positives = 60/87 (68%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNE D LE+ RAA+WTIL + P + +AM +GI +A LQALTQIQEVTLTFVPKI+ + +
Sbjct: 1 MNEVDALELVRAAIWTILIGAGPAVAAAMAVGIAVALLQALTQIQEVTLTFVPKIVVILL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
++++ F+G Q+ F RI S
Sbjct: 61 VMLMTGSFVGTQLYMFTENAYGRITSG 87
>gi|218133680|ref|ZP_03462484.1| hypothetical protein BACPEC_01549 [Bacteroides pectinophilus ATCC
43243]
gi|217991055|gb|EEC57061.1| hypothetical protein BACPEC_01549 [Bacteroides pectinophilus ATCC
43243]
Length = 93
Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 56/78 (71%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M E D++ IAR +W I+ +S PVL +M +G++I+ +Q +T IQE TLTFVPK++++FI
Sbjct: 5 MTEQDIITIARQTIWIIVQTSMPVLVISMIVGLVISLIQTITSIQEQTLTFVPKMLSIFI 64
Query: 61 TLIISAPFIGGQISSFVT 78
TL+I ++ +I F+T
Sbjct: 65 TLMILGSWMINRIVEFIT 82
>gi|148256777|ref|YP_001241362.1| flagellar biosynthesis protein FliQ [Bradyrhizobium sp. BTAi1]
gi|146408950|gb|ABQ37456.1| Flagellar biosynthetic protein fliQ [Bradyrhizobium sp. BTAi1]
Length = 87
Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 61/84 (72%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M A+ L++AR A+WTI+ S+P++ + +G++++ QALTQIQE TL FVPKIIA+F+
Sbjct: 1 MTGAETLDVARDAIWTIVLVSSPLMVVGLVVGVVVSLFQALTQIQEQTLVFVPKIIAIFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
TL+++ PF+ + S + + SRI
Sbjct: 61 TLLLALPFMADALHSHMMRISSRI 84
>gi|300024582|ref|YP_003757193.1| flagellar biosynthetic protein FliQ [Hyphomicrobium denitrificans
ATCC 51888]
gi|299526403|gb|ADJ24872.1| flagellar biosynthetic protein FliQ [Hyphomicrobium denitrificans
ATCC 51888]
Length = 89
Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 56/87 (64%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M E D L I + A+W + + PV+ SAM +G+ +AF QALTQ+QE+TLTFVPKIIA F+
Sbjct: 1 MTEGDALGIVQQAIWLTIILAGPVIASAMIIGVSVAFFQALTQVQEMTLTFVPKIIAGFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
++++ + G + F + RI +
Sbjct: 61 IILMTGSYSGSLLKVFTEQLYLRIATG 87
>gi|115523573|ref|YP_780484.1| flagellar biosynthesis protein FliQ [Rhodopseudomonas palustris
BisA53]
gi|115517520|gb|ABJ05504.1| flagellar biosynthetic protein FliQ [Rhodopseudomonas palustris
BisA53]
Length = 87
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 61/84 (72%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +VL+IAR A+WTI+ SAP++ + +G+ ++ +QALTQIQE TL FVPKI+++F+
Sbjct: 1 MTGMEVLDIARDAVWTIVLVSAPLMVVGLVVGVAVSLVQALTQIQEQTLVFVPKILSIFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
T +++ PF+ + S++ + SRI
Sbjct: 61 TFVLALPFMADAMHSYMMRISSRI 84
>gi|90423031|ref|YP_531401.1| flagellar biosynthesis protein FliQ [Rhodopseudomonas palustris
BisB18]
gi|90105045|gb|ABD87082.1| flagellar biosynthetic protein FliQ [Rhodopseudomonas palustris
BisB18]
Length = 87
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 60/84 (71%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + L++AR A+WTI+ S+P++ + +G+ ++ +QALTQIQE TL FVPKIIA+F+
Sbjct: 1 MTGMETLDVARDAIWTIVIVSSPLMVVGLVVGVAVSLVQALTQIQEQTLVFVPKIIAIFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
TLI++ PF+ + S + + SRI
Sbjct: 61 TLILALPFMADAMHSHMMRISSRI 84
>gi|86750883|ref|YP_487379.1| flagellar biosynthesis protein FliQ [Rhodopseudomonas palustris
HaA2]
gi|86573911|gb|ABD08468.1| flagellar biosynthetic protein FliQ [Rhodopseudomonas palustris
HaA2]
Length = 87
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 62/84 (73%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M A+ L+IAR A+WTI+ SAP++ + +G+ ++ +QALTQIQE TL FVPKI+A+F+
Sbjct: 1 MTGAETLDIAREAVWTIVIVSAPLMVVGLVVGVAVSLVQALTQIQEQTLVFVPKILAMFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
TL+++ PF+ ++ + + + SRI
Sbjct: 61 TLVLTLPFMADRLHAEMLRISSRI 84
>gi|329888175|ref|ZP_08266773.1| flagellar biosynthetic protein FliQ [Brevundimonas diminuta ATCC
11568]
gi|328846731|gb|EGF96293.1| flagellar biosynthetic protein FliQ [Brevundimonas diminuta ATCC
11568]
Length = 87
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 54/84 (64%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ A+VL++ R A+W + P L A+ +G+ I QALTQIQE TL + PKIIA+F+
Sbjct: 1 MSGAEVLDVGRDALWLTIQLCLPALIVALVVGVAIGLFQALTQIQEQTLVYAPKIIAIFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
+L++ P +G + F+ + +RI
Sbjct: 61 SLLLFLPLMGALLGGFMREIAARI 84
>gi|220925378|ref|YP_002500680.1| flagellar biosynthetic protein FliQ [Methylobacterium nodulans
ORS 2060]
gi|219949985|gb|ACL60377.1| flagellar biosynthetic protein FliQ [Methylobacterium nodulans
ORS 2060]
Length = 88
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 57/87 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +L+IAR + T L P++ A+ +G+ ++ LQALTQIQE TL +VPKI+AVF
Sbjct: 1 MTGLAILDIARDGIVTFLKVGGPLMVVALIVGLAVSLLQALTQIQEQTLIYVPKIVAVFA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
+++ PF+G ++ ++T + +RI +
Sbjct: 61 AMLLMLPFMGDAMAGYMTRIAARIAAG 87
>gi|240145487|ref|ZP_04744088.1| flagellar biosynthetic protein FliQ [Roseburia intestinalis
L1-82]
gi|257202302|gb|EEV00587.1| flagellar biosynthetic protein FliQ [Roseburia intestinalis
L1-82]
gi|291536020|emb|CBL09132.1| flagellar biosynthetic protein FliQ [Roseburia intestinalis
M50/1]
gi|291538512|emb|CBL11623.1| flagellar biosynthetic protein FliQ [Roseburia intestinalis
XB6B4]
Length = 89
Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 58/83 (69%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M E VL++A+ A++TI+ SAP+L ++ +G++++ Q +T IQE TLTFVPKIIAVF+
Sbjct: 1 MTEGQVLDVAKEAIYTIIICSAPMLIISLVVGLIVSIFQTVTSIQEQTLTFVPKIIAVFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSR 83
L+I +I ++ FVT + S
Sbjct: 61 GLMIFGSWILTNLTEFVTTLWSN 83
>gi|146341892|ref|YP_001206940.1| flagellar biosynthesis protein FliQ [Bradyrhizobium sp. ORS278]
gi|146194698|emb|CAL78723.1| Flagellar biosynthetic protein fliQ [Bradyrhizobium sp. ORS278]
Length = 87
Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 59/84 (70%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M A+ L++AR A+WTI+ S+P++ + +G++++ QALTQIQE TL FVPKIIA+F+
Sbjct: 1 MTGAETLDVARDAIWTIVIVSSPLMVVGLVVGVVVSLFQALTQIQEQTLVFVPKIIAIFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
TL++ PF+ + + + SRI
Sbjct: 61 TLLLGLPFMADALHQHMMRISSRI 84
>gi|39936946|ref|NP_949222.1| flagellar biosynthesis protein FliQ [Rhodopseudomonas palustris
CGA009]
gi|192292774|ref|YP_001993379.1| flagellar biosynthesis protein FliQ [Rhodopseudomonas palustris
TIE-1]
gi|39650803|emb|CAE29326.1| putative flagellar biosynthesis protein fliQ [Rhodopseudomonas
palustris CGA009]
gi|192286523|gb|ACF02904.1| export protein FliQ family 3 [Rhodopseudomonas palustris TIE-1]
Length = 87
Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 60/84 (71%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + L++AR A+WTI+ SAP++ + +G+ ++ +QALTQIQE TL FVPKI+A+F+
Sbjct: 1 MTGPETLDVARDAIWTIVVVSAPLMVVGLVVGVAVSLVQALTQIQEQTLVFVPKILAMFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
TL+++ PF+ + S + + SRI
Sbjct: 61 TLVLALPFMADALHSQMMRISSRI 84
>gi|229918643|ref|YP_002887289.1| flagellar biosynthetic protein FliQ [Exiguobacterium sp. AT1b]
gi|229470072|gb|ACQ71844.1| flagellar biosynthetic protein FliQ [Exiguobacterium sp. AT1b]
Length = 90
Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 56/80 (70%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + V+ +A ++WT+L S P+L ++ +G++I+ LQA TQIQE TL+FVPKII+VFI
Sbjct: 1 MTQEMVIYLATESVWTLLKISMPLLLISLIVGLVISILQATTQIQEQTLSFVPKIISVFI 60
Query: 61 TLIISAPFIGGQISSFVTLV 80
L+I P++ QI F L+
Sbjct: 61 GLVIFGPWMLQQIEGFTRLI 80
>gi|145301464|ref|YP_001144303.1| AscS protein [Aeromonas salmonicida subsp. salmonicida A449]
gi|38201230|emb|CAD56765.1| ascS protein [Aeromonas salmonicida subsp. salmonicida]
gi|66947957|emb|CAE83094.1| AscS protein [Aeromonas salmonicida subsp. salmonicida]
gi|142856346|gb|ABO92555.1| AscS protein [Aeromonas salmonicida subsp. salmonicida A449]
Length = 88
Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 54/84 (64%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ AD+L A+W +L S P + A +G L++ LQALTQIQE TL FV K+IAV I
Sbjct: 1 MSHADILHFTSQALWLVLILSMPPVLVAALVGTLVSLLQALTQIQEQTLGFVAKLIAVVI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
TL + ++G ++ SF +VL ++
Sbjct: 61 TLFATTAWLGNELYSFANMVLFKV 84
>gi|144900466|emb|CAM77330.1| Bacterial export protein FliQ, family 3 [Magnetospirillum
gryphiswaldense MSR-1]
Length = 89
Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 61/84 (72%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M EA++++IAR + T++ +AP L + + +G++I+ LQ +TQIQE+TLTFVPK++ VF
Sbjct: 1 MTEAELIDIARDGISTLIFVAAPPLLTGLAVGLVISILQTITQIQEMTLTFVPKVLLVFG 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
++I+ PF+ G ++ F +L R+
Sbjct: 61 SIILFLPFMLGLLTDFWKAMLDRV 84
>gi|83309716|ref|YP_419980.1| flagellar biosynthesis pathway [Magnetospirillum magneticum
AMB-1]
gi|82944557|dbj|BAE49421.1| Flagellar biosynthesis pathway [Magnetospirillum magneticum
AMB-1]
Length = 89
Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 57/84 (67%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M E ++++IAR + +L +AP L + + +G++I+ Q LTQIQE TLTFVPK++ VF
Sbjct: 1 MTEPELIDIARETIMVMLKVAAPTLLTGLVVGLVISIFQTLTQIQEQTLTFVPKMLLVFA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
++I+ PF+ ++ F LV+ R+
Sbjct: 61 SMILFLPFMLHSLTEFWRLVMDRV 84
>gi|145284337|gb|ABP51918.1| AscS [Aeromonas veronii bv. sobria]
Length = 88
Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 54/84 (64%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ AD+L A+W +L S P + A +G L++ LQALTQIQE TL FV K+IAV I
Sbjct: 1 MSHADILHFTSQALWLVLILSMPPVLVAALVGTLVSLLQALTQIQEQTLGFVAKLIAVVI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
TL + ++G ++ SF +VL ++
Sbjct: 61 TLFATTAWLGNELYSFADMVLFKV 84
>gi|170748650|ref|YP_001754910.1| flagellar biosynthetic protein FliQ [Methylobacterium
radiotolerans JCM 2831]
gi|170655172|gb|ACB24227.1| flagellar biosynthetic protein FliQ [Methylobacterium
radiotolerans JCM 2831]
Length = 88
Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 58/87 (66%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +L+IAR ++ L + P++ A+ +G+ ++ +QALTQIQE TL +VPK++AVF
Sbjct: 1 MTGLAILDIARDGIFVFLKVAGPLMLVALAVGLAVSLVQALTQIQEQTLIYVPKVVAVFA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
L++ PF+G ++ ++T + +RI +
Sbjct: 61 ALLLMLPFMGDAMAGYMTRIAARIAAG 87
>gi|316932836|ref|YP_004107818.1| export protein FliQ family 3 [Rhodopseudomonas palustris DX-1]
gi|315600550|gb|ADU43085.1| export protein FliQ family 3 [Rhodopseudomonas palustris DX-1]
Length = 87
Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 60/84 (71%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + L++AR A+WTI+ SAP++ + +G+ ++ +QALTQIQE TL FVPKI+A+FI
Sbjct: 1 MTGPETLDVARDAIWTIVVVSAPLMVVGLVVGVAVSLVQALTQIQEQTLVFVPKILAMFI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
TL+++ PF+ + + + + SRI
Sbjct: 61 TLVLALPFMADALHAQMLRISSRI 84
>gi|23016625|ref|ZP_00056379.1| COG1987: Flagellar biosynthesis pathway, component FliQ
[Magnetospirillum magnetotacticum MS-1]
Length = 89
Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 57/84 (67%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M E +++++AR + +L +AP L + + +G++I+ Q LTQIQE TLTFVPK++ VF
Sbjct: 1 MTEPELIDVARETIMVMLKVAAPTLLTGLVVGLIISIFQTLTQIQEQTLTFVPKMLLVFA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
++I+ PF+ ++ F LV+ R+
Sbjct: 61 SMILFLPFMLHSLTEFWRLVMDRV 84
>gi|170743256|ref|YP_001771911.1| flagellar biosynthetic protein FliQ [Methylobacterium sp. 4-46]
gi|168197530|gb|ACA19477.1| flagellar biosynthetic protein FliQ [Methylobacterium sp. 4-46]
Length = 88
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 57/87 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +L+IAR + T L + P++ A+ +G+ ++ LQALTQIQE TL +VPKI+AVF
Sbjct: 1 MTGLAILDIARDGIVTFLKVAGPLMMIALVVGLAVSLLQALTQIQEQTLIYVPKIVAVFA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
+++ PF+G ++ ++ + +RI +
Sbjct: 61 AMLLMLPFMGDALAGYMGRIAARIAAG 87
>gi|114777579|ref|ZP_01452560.1| flagellar biosynthetic protein FliQ [Mariprofundus ferrooxydans
PV-1]
gi|114552050|gb|EAU54567.1| flagellar biosynthetic protein FliQ [Mariprofundus ferrooxydans
PV-1]
Length = 89
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 58/86 (67%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V++I A+ +L S P+L A+ +GI I+ QA+TQIQE+TLTFVPKIIAVF+
Sbjct: 1 MTPDSVIQIGSEALKVVLMISLPMLGVALVVGIAISLFQAVTQIQEMTLTFVPKIIAVFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
+I++AP++ Q+ SF + S I +
Sbjct: 61 AMILAAPWMSDQMISFTRELFSMIPT 86
>gi|46398251|gb|AAS91805.1| AscS [Aeromonas hydrophila]
Length = 88
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 53/84 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ AD+L +W +L S P + A +G L++ LQALTQIQE TL FV K+IAV I
Sbjct: 1 MSHADILHFTSQTLWLVLILSMPPVLVAALVGTLVSLLQALTQIQEQTLGFVAKLIAVVI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
TL + ++G ++ SF +VL ++
Sbjct: 61 TLFATTAWLGNELYSFADMVLYKV 84
>gi|83594155|ref|YP_427907.1| flagellar biosynthesis protein FliQ [Rhodospirillum rubrum ATCC
11170]
gi|83577069|gb|ABC23620.1| Flagellar biosynthesis protein FliQ [Rhodospirillum rubrum ATCC
11170]
Length = 84
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 53/72 (73%)
Query: 6 VLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIIS 65
++++AR A+ T+L SAP L + M +G++IA Q LTQIQE+TL FVPKI+ VF +L+++
Sbjct: 2 IMDVARDAILTMLIISAPPLLAGMVIGLIIALFQTLTQIQEMTLVFVPKIVVVFASLLLT 61
Query: 66 APFIGGQISSFV 77
P++ Q S F+
Sbjct: 62 LPWMVRQASEFM 73
>gi|10955565|ref|NP_052406.1| YscS [Yersinia enterocolitica]
gi|16082733|ref|NP_395179.1| needle complex export protein [Yersinia pestis CO92]
gi|28372986|ref|NP_783680.1| YscS [Yersinia enterocolitica]
gi|31795276|ref|NP_857737.1| needle complex export protein [Yersinia pestis KIM]
gi|31795478|ref|NP_857932.1| needle complex export protein [Yersinia pestis KIM]
gi|32470293|ref|NP_863528.1| YscS [Yersinia enterocolitica]
gi|45478539|ref|NP_995366.1| type III secretion protein yscS YscS [Yersinia pestis biovar
Microtus str. 91001]
gi|51593914|ref|YP_068481.1| yscS; putative type III secretion protein [Yersinia
pseudotuberculosis IP 32953]
gi|108793659|ref|YP_636809.1| type III secretion protein [Yersinia pestis Antiqua]
gi|122815817|ref|YP_001004083.1| putative type III secretion protein [Yersinia enterocolitica
subsp. enterocolitica 8081]
gi|145597137|ref|YP_001154601.1| type III secretion protein [Yersinia pestis Pestoides F]
gi|149192694|ref|YP_001293926.1| putative type III secretion protein [Yersinia pestis CA88-4125]
gi|162417747|ref|YP_001604477.1| type III secretion apparatus protein YscS [Yersinia pestis
Angola]
gi|165927783|ref|ZP_02223615.1| type III secretion apparatus protein YscS [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165940088|ref|ZP_02228622.1| type III secretion apparatus protein YscS [Yersinia pestis biovar
Orientalis str. IP275]
gi|166011708|ref|ZP_02232606.1| type III secretion apparatus protein YscS [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166214448|ref|ZP_02240483.1| type III secretion apparatus protein YscS [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167401906|ref|ZP_02307392.1| type III secretion apparatus protein YscS [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167422415|ref|ZP_02314168.1| type III secretion apparatus protein YscS [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167422450|ref|ZP_02314203.1| type III secretion apparatus protein YscS [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167422878|ref|ZP_02314631.1| type III secretion apparatus protein YscS [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167426849|ref|ZP_02318602.1| type III secretion apparatus protein YscS [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|186897579|ref|YP_001874690.1| HrpO family type III secretion protein [Yersinia
pseudotuberculosis PB1/+]
gi|229896861|ref|ZP_04512021.1| putative type III secretion protein [Yersinia pestis Pestoides A]
gi|229900216|ref|ZP_04515352.1| putative type III secretion protein [Yersinia pestis biovar
Orientalis str. India 195]
gi|270491104|ref|ZP_06208176.1| type III secretion protein, HrpO family [Yersinia pestis KIM D27]
gi|332163587|ref|YP_004424929.1| putative type III secretion protein [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|57015236|sp|P69982|YSCS_YERPE RecName: Full=Yop proteins translocation protein S
gi|57015237|sp|P69983|YSCS_YERPS RecName: Full=Yop proteins translocation protein S
gi|14579351|gb|AAK69228.1|AF336309_23 YscS [Yersinia enterocolitica]
gi|475124|gb|AAA27679.1| yscS [Yersinia pseudotuberculosis]
gi|2996236|gb|AAC62559.1| Yop proteins translocation protein S homolog [Yersinia pestis KIM
10]
gi|3822066|gb|AAC69786.1| type III secretion protein [Yersinia pestis KIM 10]
gi|4324352|gb|AAD16829.1| YscS [Yersinia enterocolitica W22703]
gi|5832465|emb|CAB54922.1| putative type III secretion protein [Yersinia pestis CO92]
gi|23630558|gb|AAN37514.1| YscS [Yersinia enterocolitica]
gi|45357161|gb|AAS58557.1| type III secretion protein yscS YscS [Yersinia pestis biovar
Microtus str. 91001]
gi|51591611|emb|CAF25415.1| yscS; putative type III secretion protein [Yersinia
pseudotuberculosis IP 32953]
gi|108782206|gb|ABG16261.1| type III secretion protein [Yersinia pestis Antiqua]
gi|121663691|emb|CAL10053.1| putative type III secretion protein [Yersinia enterocolitica
subsp. enterocolitica 8081]
gi|145212905|gb|ABP42311.1| type III secretion protein [Yersinia pestis Pestoides F]
gi|148872352|gb|ABR14842.1| putative type III secretion protein [Yersinia pestis CA88-4125]
gi|162354767|gb|ABX88714.1| type III secretion apparatus protein YscS [Yersinia pestis
Angola]
gi|165911998|gb|EDR30641.1| type III secretion apparatus protein YscS [Yersinia pestis biovar
Orientalis str. IP275]
gi|165920219|gb|EDR37520.1| type III secretion apparatus protein YscS [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165989315|gb|EDR41616.1| type III secretion apparatus protein YscS [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166204341|gb|EDR48821.1| type III secretion apparatus protein YscS [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166958168|gb|EDR55189.1| type III secretion apparatus protein YscS [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|166958652|gb|EDR55673.1| type III secretion apparatus protein YscS [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|166958687|gb|EDR55708.1| type III secretion apparatus protein YscS [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167048634|gb|EDR60042.1| type III secretion apparatus protein YscS [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167054148|gb|EDR63975.1| type III secretion apparatus protein YscS [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|186700605|gb|ACC91233.1| type III secretion protein, HrpO family [Yersinia
pseudotuberculosis PB1/+]
gi|229686736|gb|EEO78816.1| putative type III secretion protein [Yersinia pestis biovar
Orientalis str. India 195]
gi|229700132|gb|EEO88171.1| putative type III secretion protein [Yersinia pestis Pestoides A]
gi|270334847|gb|EFA45626.1| type III secretion protein, HrpO family [Yersinia pestis KIM D27]
gi|310923236|emb|CBW54702.1| YscS, T3SS component [Yersinia enterocolitica (type O:8)]
gi|317374479|gb|ADV16654.1| type III secretion inner membrane protein [Yersinia pestis]
gi|318608196|emb|CBY78170.1| type III secretion inner membrane protein (YscS,homologous to
flagellar export components) [Yersinia enterocolitica
subsp. palearctica Y11]
gi|325667817|gb|ADZ44460.1| putative type III secretion protein [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
Length = 88
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 55/86 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M++ D++ A+W +L S P + A +G L++ +QALTQIQE TL FV K+IAV +
Sbjct: 1 MSQGDIIHFTSQALWLVLVLSMPPVLVAAVVGTLVSLVQALTQIQEQTLGFVIKLIAVVV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
TL +A ++G ++ SF + + +IQ
Sbjct: 61 TLFATASWLGNELHSFAEMTMMKIQG 86
>gi|284989539|ref|YP_003408093.1| export protein FliQ family 3 [Geodermatophilus obscurus DSM
43160]
gi|284062784|gb|ADB73722.1| export protein FliQ family 3 [Geodermatophilus obscurus DSM
43160]
Length = 91
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 53/76 (69%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M++ADV EIA A M +APVL +A+ +G LI+ QA TQIQE TL+FVPK+IAV I
Sbjct: 1 MSDADVTEIAVATMLVAAKVAAPVLLTALLVGFLISLFQAATQIQEPTLSFVPKVIAVAI 60
Query: 61 TLIISAPFIGGQISSF 76
L+++ ++ ++ +F
Sbjct: 61 ALLVTGNWVLSELVTF 76
>gi|39545584|gb|AAR27891.1| AscS [Aeromonas hydrophila]
Length = 105
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 53/84 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ AD+L +W +L S P + A +G L++ LQALTQIQE TL FV K+IAV I
Sbjct: 18 MSHADILHFTSQTLWLVLILSMPPVLVAALVGTLVSLLQALTQIQEQTLGFVAKLIAVVI 77
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
TL + ++G ++ SF +VL ++
Sbjct: 78 TLFATTAWLGNELYSFADMVLFKV 101
>gi|209964221|ref|YP_002297136.1| flagellar biosynthesis protein FliQ [Rhodospirillum centenum SW]
gi|209957687|gb|ACI98323.1| flagellar biosynthesis protein FliQ [Rhodospirillum centenum SW]
Length = 91
Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 54/84 (64%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +ADV+ I R A+ ++ P++ + +G++I+ QALTQIQE T+TFVPKI+ +F
Sbjct: 1 MTDADVIAIGREALLVVVIVGGPLMLIGLVVGLVISLFQALTQIQEQTITFVPKIVIMFA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
++ PF+ G + SF+ + +I
Sbjct: 61 AMVFLMPFMLGHLRSFMEGIADKI 84
>gi|54124951|gb|AAV30219.1| AscS [Aeromonas hydrophila]
Length = 105
Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 53/84 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ AD+L +W +L S P + A +G L++ LQALTQIQE TL FV K++AV I
Sbjct: 18 MSHADILHFTSQTLWLVLILSMPPVLVAALVGTLVSLLQALTQIQEQTLGFVAKLVAVVI 77
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
TL + ++G ++ SF +VL ++
Sbjct: 78 TLFATTAWLGNELYSFADMVLLKV 101
>gi|295690543|ref|YP_003594236.1| flagellar biosynthetic protein FliQ [Caulobacter segnis ATCC
21756]
gi|295432446|gb|ADG11618.1| flagellar biosynthetic protein FliQ [Caulobacter segnis ATCC
21756]
Length = 87
Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 56/84 (66%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M A+VL++ R A+W L APVL + +G+ I QALTQIQE TL + PKI+A+F+
Sbjct: 1 MTGAEVLDVGRDAIWLTLKLCAPVLIVGLVVGVAIGLFQALTQIQEQTLVYAPKIVAIFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
+L+I P +G +S+F+ + +RI
Sbjct: 61 SLLIFLPMMGALMSAFMRQIAARI 84
>gi|260438789|ref|ZP_05792605.1| flagellar biosynthetic protein FliQ [Butyrivibrio crossotus DSM
2876]
gi|292808778|gb|EFF67983.1| flagellar biosynthetic protein FliQ [Butyrivibrio crossotus DSM
2876]
Length = 91
Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 58/83 (69%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E +++I+R A++ I+ SAP+L ++ +G++I+ Q +T IQE TLTFVPKIIAVFI
Sbjct: 1 MSEQQIIDISRKALYLIIQCSAPILIISLVVGLVISIFQTMTSIQEQTLTFVPKIIAVFI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSR 83
+++ ++ I+S++ + S
Sbjct: 61 GVMLFGSWMLNNITSYMNELWSN 83
>gi|238916765|ref|YP_002930282.1| hypothetical protein EUBELI_00827 [Eubacterium eligens ATCC
27750]
gi|238872125|gb|ACR71835.1| Hypothetical protein EUBELI_00827 [Eubacterium eligens ATCC
27750]
Length = 88
Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 54/80 (67%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ V+ IAR +W I+ +S P+L +M +G++I+ Q LT IQE TLTFVPK++A+ I
Sbjct: 1 MDAGQVVTIARQTIWVIVKTSVPLLLVSMIVGLIISLFQTLTSIQEQTLTFVPKLLAIMI 60
Query: 61 TLIISAPFIGGQISSFVTLV 80
L++ +I +I SF+ ++
Sbjct: 61 ALMLMGNWILNEIVSFMQML 80
>gi|114765221|ref|ZP_01444353.1| flagellar biosynthesis protein Q [Pelagibaca bermudensis
HTCC2601]
gi|114542356|gb|EAU45384.1| flagellar biosynthesis protein Q [Roseovarius sp. HTCC2601]
Length = 89
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 46/67 (68%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M E+D I A +L S P++ A+ +G++IAF QALTQ+QE+TLTFVPKI+A+FI
Sbjct: 1 MTESDTYTILSDAFLAVLYGSGPIMAIALVVGLIIAFFQALTQVQEMTLTFVPKIVAIFI 60
Query: 61 TLIISAP 67
L+ P
Sbjct: 61 GLLAFTP 67
>gi|253988528|ref|YP_003039884.1| type III secretion component protein scts [Photorhabdus
asymbiotica subsp. asymbiotica ATCC 43949]
gi|211637890|emb|CAR66519.1| type iii secretion component protein scts [Photorhabdus
asymbiotica subsp. asymbiotica ATCC 43949]
gi|253779978|emb|CAQ83139.1| type iii secretion component protein scts [Photorhabdus
asymbiotica]
Length = 88
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 54/84 (64%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ AD+L ++W +L S P + A +G L++ +QALTQIQE TL FV K+IAV I
Sbjct: 1 MSNADILHFTSQSLWLVLILSLPPVLMAAVVGTLVSLIQALTQIQEQTLGFVIKLIAVII 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
TL +A ++G ++ SF + S++
Sbjct: 61 TLFATATWLGNELYSFANMAFSKV 84
>gi|118443073|ref|YP_877990.1| flagellar biosynthetic protein FliQ [Clostridium novyi NT]
gi|118133529|gb|ABK60573.1| flagellar biosynthetic protein FliQ [Clostridium novyi NT]
Length = 89
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 53/76 (69%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E V+ I + AM+T + +SAP+L +++ +G+LI+ QA TQIQE TLTFVPK+I V I
Sbjct: 1 MSEEMVIGILKDAMYTGIIASAPILIASIAIGLLISIFQATTQIQEQTLTFVPKLIGVAI 60
Query: 61 TLIISAPFIGGQISSF 76
+I+A FI + F
Sbjct: 61 VGLITAKFINHTVVGF 76
>gi|296531767|ref|ZP_06894589.1| flagellar biosynthesis protein FliQ [Roseomonas cervicalis ATCC
49957]
gi|296267906|gb|EFH13711.1| flagellar biosynthesis protein FliQ [Roseomonas cervicalis ATCC
49957]
Length = 87
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 45/68 (66%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M E DV+EI R + + + P L +A+ G+ ++ LQALTQIQE+TL++VPKI+ +
Sbjct: 1 MQEGDVIEILRGGFYATMMVAGPPLLAALITGVAVSVLQALTQIQEMTLSYVPKIVVTLV 60
Query: 61 TLIISAPF 68
++S PF
Sbjct: 61 ATMLSLPF 68
>gi|168186133|ref|ZP_02620768.1| flagellar biosynthetic protein FliQ [Clostridium botulinum C str.
Eklund]
gi|169295660|gb|EDS77793.1| flagellar biosynthetic protein FliQ [Clostridium botulinum C str.
Eklund]
Length = 89
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 52/76 (68%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E V+ I + AM+T + +SAP+L ++ +G+LI+ QA TQIQE TLTFVPK+I V I
Sbjct: 1 MSEEMVIGILKDAMYTGIMASAPILIVSIVIGLLISIFQATTQIQEQTLTFVPKLIGVAI 60
Query: 61 TLIISAPFIGGQISSF 76
+I+A FI + F
Sbjct: 61 VGLITAKFINHTVVGF 76
>gi|16125327|ref|NP_419891.1| flagellar biosynthesis protein FliQ [Caulobacter crescentus CB15]
gi|3023776|sp|Q45974|FLIQ_CAUCR RecName: Full=Flagellar biosynthetic protein FliQ
gi|535423|gb|AAA66206.1| FliQ [Caulobacter crescentus CB15]
gi|13422377|gb|AAK23059.1| flagellar biosynthesis protein FliQ [Caulobacter crescentus CB15]
Length = 87
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 56/84 (66%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M A+VL++ R A+W L APVL + +G++I QALTQIQE TL + PKI+A+FI
Sbjct: 1 MTGAEVLDVGRDAIWLTLQLCAPVLIVGLVVGVIIGLFQALTQIQEATLVYAPKIVAIFI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
+L+I P +G +S F+ + +RI
Sbjct: 61 SLLIFLPLMGSLMSGFMRQIAARI 84
>gi|221234066|ref|YP_002516502.1| flagellar biosynthesis protein FliQ [Caulobacter crescentus
NA1000]
gi|220963238|gb|ACL94594.1| flagellar biosynthesis protein FliQ [Caulobacter crescentus
NA1000]
Length = 88
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 56/84 (66%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M A+VL++ R A+W L APVL + +G++I QALTQIQE TL + PKI+A+FI
Sbjct: 2 MTGAEVLDVGRDAIWLTLQLCAPVLIVGLVVGVIIGLFQALTQIQEATLVYAPKIVAIFI 61
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
+L+I P +G +S F+ + +RI
Sbjct: 62 SLLIFLPLMGSLMSGFMRQIAARI 85
>gi|27380922|ref|NP_772451.1| flagellar biosynthesis protein FliQ [Bradyrhizobium japonicum
USDA 110]
gi|27354088|dbj|BAC51076.1| flagellar biosynthetic protein [Bradyrhizobium japonicum USDA
110]
Length = 87
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 59/84 (70%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + L++AR A+WTI+ S+P++ + +G++++ QALTQIQE TL +VPKI+A+F
Sbjct: 1 MTGPETLDVARDAIWTIVIVSSPLMVVGLVVGVIVSLFQALTQIQEQTLIYVPKILAIFA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
T++++ PF+ + + + + SRI
Sbjct: 61 TMLLALPFMADSLHAHMLRISSRI 84
>gi|256376456|ref|YP_003100116.1| export protein FliQ family 3 [Actinosynnema mirum DSM 43827]
gi|255920759|gb|ACU36270.1| export protein FliQ family 3 [Actinosynnema mirum DSM 43827]
Length = 90
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 54/86 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN+ V+E+ AM +APVL +A+ +G I+ Q++TQIQEVTL+FVPK V +
Sbjct: 1 MNDTTVVELGSNAMMITAKLAAPVLLTALLIGFTISLFQSVTQIQEVTLSFVPKAAGVCV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
L++S ++ +I +F T + RI S
Sbjct: 61 ALLLSGSWMVHEIITFTTDLFGRIPS 86
>gi|323703182|ref|ZP_08114835.1| flagellar biosynthetic protein FliQ [Desulfotomaculum nigrificans
DSM 574]
gi|323531841|gb|EGB21727.1| flagellar biosynthetic protein FliQ [Desulfotomaculum nigrificans
DSM 574]
Length = 89
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 57/84 (67%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M E V+ +AR A+ ++ S P L AM +G++I+ LQA TQIQE TL+FVPK++AVF+
Sbjct: 1 MTETFVIHVAREALMMVVILSLPALGVAMLVGLIISILQATTQIQEQTLSFVPKMVAVFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
TL+I+A ++ +F T + +I
Sbjct: 61 TLLIAASWLLNIAVNFTTRLYQQI 84
>gi|288553048|ref|YP_003424983.1| flagellar biosynthesis protein FliQ [Bacillus pseudofirmus OF4]
gi|288544208|gb|ADC48091.1| flagellar biosynthesis protein FliQ [Bacillus pseudofirmus OF4]
Length = 89
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ V+ +A +WT+L + P+L A+ LG+L++ QA TQIQE TL F+PKI+ V
Sbjct: 1 MSSEFVISMAENGVWTVLIVAGPLLIVALGLGLLVSIFQATTQIQEQTLAFIPKIVGVLA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
+L+I P++ Q+++F + S +
Sbjct: 61 SLVIFGPWMLSQVTNFAYQIFSNLH 85
>gi|188581882|ref|YP_001925327.1| flagellar biosynthetic protein FliQ [Methylobacterium populi
BJ001]
gi|179345380|gb|ACB80792.1| flagellar biosynthetic protein FliQ [Methylobacterium populi
BJ001]
Length = 88
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 52/76 (68%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +L+IAR ++ L + P++ A+ +G++++ QALTQIQE TL +VPKI+AVF
Sbjct: 1 MTGLAILDIARDGIFVFLKVAGPLMIVALVVGLIVSLFQALTQIQEQTLIYVPKIVAVFG 60
Query: 61 TLIISAPFIGGQISSF 76
+++ PFIG ++++
Sbjct: 61 VMLLMLPFIGDAMAAY 76
>gi|302384126|ref|YP_003819949.1| flagellar biosynthetic protein FliQ [Brevundimonas subvibrioides
ATCC 15264]
gi|302194754|gb|ADL02326.1| flagellar biosynthetic protein FliQ [Brevundimonas subvibrioides
ATCC 15264]
Length = 87
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 57/84 (67%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ A+VL++ R A+W + APVL + +G+ I QALTQIQE TL + PKIIA+F+
Sbjct: 1 MSGAEVLDVGRDAIWLTVQLCAPVLIVGLVVGVGIGLFQALTQIQEQTLVYAPKIIAIFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
+L++ P +GG + +F+ + +RI
Sbjct: 61 SLLLFLPLMGGLLGAFMRTIAARI 84
>gi|238924153|ref|YP_002937669.1| hypothetical protein EUBREC_1791 [Eubacterium rectale ATCC 33656]
gi|238875828|gb|ACR75535.1| hypothetical protein EUBREC_1791 [Eubacterium rectale ATCC 33656]
gi|291524886|emb|CBK90473.1| flagellar biosynthetic protein FliQ [Eubacterium rectale DSM
17629]
Length = 92
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 58/82 (70%)
Query: 2 NEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFIT 61
+ VL+IAR A++T + +SAP+L ++ +G++++ Q +T IQE TLTFVPKIIA+F+
Sbjct: 3 TQEAVLDIAREAIYTTIITSAPLLLISLIVGLIVSIFQTVTSIQEQTLTFVPKIIAIFLV 62
Query: 62 LIISAPFIGGQISSFVTLVLSR 83
+++ ++ +S F+T + S+
Sbjct: 63 MMLCGSWMLDTMSGFMTDLWSK 84
>gi|163802010|ref|ZP_02195906.1| translocation protein in type III secretion [Vibrio sp. AND4]
gi|159174151|gb|EDP58959.1| translocation protein in type III secretion [Vibrio sp. AND4]
Length = 88
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 54/84 (64%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN A+++ A+ +L S P + A +G L++ +QALTQ+QE TL FV K+IAV I
Sbjct: 1 MNPAEIIHFTTQALTLVLFLSLPPILVAALVGTLVSLIQALTQVQEQTLGFVVKLIAVII 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
TL ++ ++G ++ SF TL L +I
Sbjct: 61 TLFVTTQWLGAELHSFATLTLDKI 84
>gi|163852025|ref|YP_001640068.1| flagellar biosynthetic protein FliQ [Methylobacterium extorquens
PA1]
gi|218530779|ref|YP_002421595.1| flagellar biosynthetic protein FliQ [Methylobacterium
chloromethanicum CM4]
gi|240139292|ref|YP_002963767.1| flagellar biosynthesis [Methylobacterium extorquens AM1]
gi|254561748|ref|YP_003068843.1| flagellar biosynthesis [Methylobacterium extorquens DM4]
gi|163663630|gb|ABY30997.1| flagellar biosynthetic protein FliQ [Methylobacterium extorquens
PA1]
gi|218523082|gb|ACK83667.1| flagellar biosynthetic protein FliQ [Methylobacterium
chloromethanicum CM4]
gi|240009264|gb|ACS40490.1| flagellar biosynthesis [Methylobacterium extorquens AM1]
gi|254269026|emb|CAX24987.1| flagellar biosynthesis [Methylobacterium extorquens DM4]
Length = 88
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 52/76 (68%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +L+IAR ++ L + P++ A+ +G++++ QALTQIQE TL +VPKI+AVF
Sbjct: 1 MTGLAILDIARDGIFVFLKVAGPMMIVALVVGLIVSLFQALTQIQEQTLIYVPKIVAVFG 60
Query: 61 TLIISAPFIGGQISSF 76
+++ PFIG ++++
Sbjct: 61 VMLLMLPFIGDAMAAY 76
>gi|220932508|ref|YP_002509416.1| flagellar biosynthetic protein FliQ [Halothermothrix orenii H
168]
gi|219993818|gb|ACL70421.1| flagellar biosynthetic protein FliQ [Halothermothrix orenii H
168]
Length = 89
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 56/88 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M++A V++I R A++ +L APV+ + G+L+A QA TQIQE TL FVPKI+AV I
Sbjct: 1 MDKALVIDIGRNALFVVLKIIAPVIGFGLITGLLVAIFQATTQIQEQTLAFVPKILAVLI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
++ I P++ I FVT + I + +
Sbjct: 61 SIAIFGPWMLSTIVDFVTSLFQHIPTYI 88
>gi|51246524|ref|YP_066408.1| flagellar biosynthetic protein (FliQ) [Desulfotalea psychrophila
LSv54]
gi|50877561|emb|CAG37401.1| probable flagellar biosynthetic protein (FliQ) [Desulfotalea
psychrophila LSv54]
Length = 88
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 54/80 (67%)
Query: 7 LEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISA 66
+ + R A+ TIL +AP+L + M +G+ ++ QA TQI E TLTF+PKIIAVF+T+++
Sbjct: 8 VNVCRKAIQTILMCAAPMLLAGMIVGLFVSIFQAATQINEQTLTFIPKIIAVFVTMLLFG 67
Query: 67 PFIGGQISSFVTLVLSRIQS 86
P+I + +F + V + I S
Sbjct: 68 PWIIKLLLTFTSGVFTTIAS 87
>gi|85059284|ref|YP_454986.1| putative type III secretion apparatus [Sodalis glossinidius str.
'morsitans']
gi|84779804|dbj|BAE74581.1| putative type III secretion apparatus [Sodalis glossinidius str.
'morsitans']
Length = 89
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 55/84 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN+A + + MW +L +S PV+ A +GIL++ QALTQIQ+ TL F+ K++AV I
Sbjct: 1 MNDAALTHLVTQLMWIVLITSLPVVLVASAVGILVSLFQALTQIQDQTLQFMIKLLAVAI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
TL+ S P++GG + + VL +I
Sbjct: 61 TLMASYPWLGGILLGYTRQVLLQI 84
>gi|153832452|ref|ZP_01985119.1| VscS [Vibrio harveyi HY01]
gi|148871247|gb|EDL70119.1| VscS [Vibrio harveyi HY01]
Length = 88
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 54/84 (64%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN A+++ A+ +L S P + A +G L++ +QALTQ+QE TL FV K+IAV I
Sbjct: 1 MNPAEIIHFTTQALTLVLFLSLPPILVAALVGTLVSLVQALTQVQEQTLGFVVKLIAVII 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
TL ++ ++G ++ SF TL L +I
Sbjct: 61 TLFVTTQWLGAELHSFATLTLDKI 84
>gi|2465660|gb|AAB72202.1| YscS [Yersinia pestis]
Length = 79
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 51/77 (66%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M++ D++ A+W +L S P + A +G L++ +QALTQIQE TL FV K+IAV +
Sbjct: 1 MSQGDIIHFTSQALWLVLVLSMPPVLVAAVVGTLVSLVQALTQIQEQTLGFVIKLIAVVV 60
Query: 61 TLIISAPFIGGQISSFV 77
TL +A ++G ++ SFV
Sbjct: 61 TLFATASWLGNELHSFV 77
>gi|156974014|ref|YP_001444921.1| Type III secretory pathway, component EscS [Vibrio harveyi ATCC
BAA-1116]
gi|41834185|gb|AAS13323.1| VscS [Vibrio harveyi]
gi|156525608|gb|ABU70694.1| hypothetical protein VIBHAR_01725 [Vibrio harveyi ATCC BAA-1116]
Length = 88
Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 54/84 (64%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN A+++ A+ +L S P + A +G L++ +QALTQ+QE TL FV K+IAV I
Sbjct: 1 MNPAEIIHFTTQALTLVLFLSLPPILVAALVGTLVSLVQALTQVQEQTLGFVVKLIAVII 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
TL ++ ++G ++ SF TL L +I
Sbjct: 61 TLFVTTQWLGAELHSFATLTLGKI 84
>gi|257871302|ref|ZP_05650955.1| flagellar biosynthesis protein [Enterococcus gallinarum EG2]
gi|257805466|gb|EEV34288.1| flagellar biosynthesis protein [Enterococcus gallinarum EG2]
Length = 87
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 53/81 (65%)
Query: 6 VLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIIS 65
VL++ R A IL+ S P L M +G++I+ QA TQIQE TL+FVPK++A+F+TLI++
Sbjct: 6 VLDVLREAFLRILAISGPALLVGMLVGLVISIFQATTQIQEQTLSFVPKLLAIFLTLILA 65
Query: 66 APFIGGQISSFVTLVLSRIQS 86
F+ + +F ++ I +
Sbjct: 66 GNFMLNLLLNFTKMIFKMISA 86
>gi|91976174|ref|YP_568833.1| flagellar biosynthesis protein FliQ [Rhodopseudomonas palustris
BisB5]
gi|91682630|gb|ABE38932.1| export protein FliQ, family 3 [Rhodopseudomonas palustris BisB5]
Length = 87
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 58/84 (69%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + L++AR A+WTI+ S P++ + +G+ ++ +QALTQIQE TL FVPKI+A+F+
Sbjct: 1 MTGPETLDVARDAVWTIVIVSTPLMVVGLVVGVAVSLVQALTQIQEQTLVFVPKILAMFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
T +++ PF+ + + + + SRI
Sbjct: 61 TFVLTLPFMADVLHAEMLRISSRI 84
>gi|257866391|ref|ZP_05646044.1| flagellar biosynthesis protein [Enterococcus casseliflavus EC30]
gi|257873093|ref|ZP_05652746.1| flagellar biosynthesis protein [Enterococcus casseliflavus EC10]
gi|257876004|ref|ZP_05655657.1| flagellar biosynthesis protein [Enterococcus casseliflavus EC20]
gi|257800349|gb|EEV29377.1| flagellar biosynthesis protein [Enterococcus casseliflavus EC30]
gi|257807257|gb|EEV36079.1| flagellar biosynthesis protein [Enterococcus casseliflavus EC10]
gi|257810170|gb|EEV38990.1| flagellar biosynthesis protein [Enterococcus casseliflavus EC20]
Length = 87
Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 52/79 (65%)
Query: 6 VLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIIS 65
VL++ R A IL+ S P L M +G++I+ QA TQIQE TL+FVPK++A+F+TLI++
Sbjct: 6 VLDVLREAFLRILAISGPALLVGMLVGLVISIFQATTQIQEQTLSFVPKLLAIFLTLILA 65
Query: 66 APFIGGQISSFVTLVLSRI 84
F+ + +F ++ I
Sbjct: 66 GNFMLNLLLNFTKMIFKMI 84
>gi|312883877|ref|ZP_07743594.1| type III secretion protein YscS [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309368335|gb|EFP95870.1| type III secretion protein YscS [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 88
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 57/84 (67%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ A+++ + A+ +L S P + A F+G L++ +QALTQ+QE TL F K++AV +
Sbjct: 1 MSSAEIIHLTTQALTLVLFLSLPPILVATFVGTLVSLIQALTQVQEQTLGFAVKLVAVIV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
TL ++ ++G ++ SF TL+L++I
Sbjct: 61 TLFVTTQWLGAELHSFSTLILNKI 84
>gi|325567518|ref|ZP_08144185.1| flagellar biosynthetic protein FliQ [Enterococcus casseliflavus
ATCC 12755]
gi|325158951|gb|EGC71097.1| flagellar biosynthetic protein FliQ [Enterococcus casseliflavus
ATCC 12755]
Length = 87
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 52/79 (65%)
Query: 6 VLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIIS 65
VL++ R A IL+ S P L M +G++I+ QA TQIQE TL+FVPK++A+F+TLI++
Sbjct: 6 VLDVLREAFLRILAISGPALLVGMLVGLVISIFQATTQIQEQTLSFVPKLLAIFLTLILA 65
Query: 66 APFIGGQISSFVTLVLSRI 84
F+ + +F ++ I
Sbjct: 66 GNFMLNLLLNFTEMIFKMI 84
>gi|251797427|ref|YP_003012158.1| flagellar biosynthetic protein FliQ [Paenibacillus sp. JDR-2]
gi|247545053|gb|ACT02072.1| flagellar biosynthetic protein FliQ [Paenibacillus sp. JDR-2]
Length = 89
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 57/83 (68%), Gaps = 1/83 (1%)
Query: 3 EAD-VLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFIT 61
AD ++ +A A+ T+L +SAP+L A+ +G++I+ QA TQIQE TL FVPKI+AVF++
Sbjct: 2 SADFIIGLAGQAISTVLKASAPMLVLALVVGLIISIFQATTQIQEQTLAFVPKIVAVFVS 61
Query: 62 LIISAPFIGGQISSFVTLVLSRI 84
LII P+I I F +L+ +
Sbjct: 62 LIIFGPWILNVIVDFTYNLLNNL 84
>gi|304404261|ref|ZP_07385923.1| flagellar biosynthetic protein FliQ [Paenibacillus
curdlanolyticus YK9]
gi|304347239|gb|EFM13071.1| flagellar biosynthetic protein FliQ [Paenibacillus
curdlanolyticus YK9]
Length = 89
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 51/69 (73%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ ++ +A A++TIL +SAP+L + +G++++ QA TQIQE TL FVPKI+AVF+
Sbjct: 1 MSAEFIIGLAGQAIYTILKASAPMLIIGLVVGLIVSIFQATTQIQEQTLAFVPKIVAVFV 60
Query: 61 TLIISAPFI 69
++II P+I
Sbjct: 61 SMIIFGPWI 69
>gi|37527634|ref|NP_930978.1| Type III secretion component protein SctS [Photorhabdus
luminescens subsp. laumondii TTO1]
gi|36787069|emb|CAE16144.1| Type III secretion component protein SctS [Photorhabdus
luminescens subsp. laumondii TTO1]
Length = 88
Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ AD+L ++W +L S P + A +G L++ +QALTQIQE TL FV K+IAV I
Sbjct: 1 MSNADILHFTSQSLWLVLILSLPPVLMAAAVGTLVSLIQALTQIQEQTLGFVIKLIAVII 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
TL +A ++G ++ SF + ++
Sbjct: 61 TLFATATWLGNELYSFANMTFLKV 84
>gi|188586036|ref|YP_001917581.1| flagellar biosynthetic protein FliQ [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179350723|gb|ACB84993.1| flagellar biosynthetic protein FliQ [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 89
Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 55/85 (64%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M E VL + R A+ T+L ++AP+L SA+ +G++++ QA TQIQE TL FVPKI+AV +
Sbjct: 1 MTEEFVLHLGREALITVLLAAAPMLASALIVGLMVSIFQATTQIQEQTLAFVPKIVAVLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
++ P++ ++ F + S I
Sbjct: 61 SVAFFGPWMYTLLTEFAINIFSNIN 85
>gi|27550056|gb|AAO18039.1| LscS [Photorhabdus luminescens]
Length = 88
Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ AD+L ++W +L S P + A +G L++ +QALTQIQE TL FV K+IAV I
Sbjct: 1 MSNADILHFTSQSLWLVLILSLPPVLMAAAVGTLVSLIQALTQIQEQTLGFVIKLIAVVI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
TL +A ++G ++ SF + ++
Sbjct: 61 TLFATATWLGNELYSFANMTFLKV 84
>gi|323341373|ref|ZP_08081617.1| flagellar biosynthetic protein FliQ [Lactobacillus ruminis ATCC
25644]
gi|323091250|gb|EFZ33878.1| flagellar biosynthetic protein FliQ [Lactobacillus ruminis ATCC
25644]
Length = 87
Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 46/63 (73%)
Query: 6 VLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIIS 65
V ++ R A+ +L SAPV+ AM +G++I+ QA TQIQE TL+FVPK+ A+FITLII+
Sbjct: 6 VTDVMRDALIRVLIVSAPVILVAMIVGLIISIFQATTQIQEQTLSFVPKLAAIFITLIIA 65
Query: 66 APF 68
F
Sbjct: 66 GNF 68
>gi|150390468|ref|YP_001320517.1| flagellar biosynthetic protein FliQ [Alkaliphilus metalliredigens
QYMF]
gi|149950330|gb|ABR48858.1| flagellar biosynthetic protein FliQ [Alkaliphilus metalliredigens
QYMF]
Length = 89
Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 57/86 (66%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+EA V+E+ + M+TIL+ SAP+L + +G+ ++ QA TQIQE TL F+PKIIAV
Sbjct: 1 MSEAMVIELGQQTMFTILTMSAPMLGFGLLVGLAVSIFQATTQIQEATLAFIPKIIAVLG 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
+++I P++ I +F + + + S
Sbjct: 61 SVVIFGPWLLSIIINFTLRLFTNMNS 86
>gi|317129192|ref|YP_004095474.1| flagellar biosynthetic protein FliQ [Bacillus cellulosilyticus
DSM 2522]
gi|315474140|gb|ADU30743.1| flagellar biosynthetic protein FliQ [Bacillus cellulosilyticus
DSM 2522]
Length = 89
Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 54/86 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN+ V+ +A ++T++ + P+L +A+ +G+L++ QA TQIQE TL F+PKI+ V +
Sbjct: 1 MNQETVISLAERGVYTVIMIAGPLLITALAIGLLVSIFQATTQIQEQTLAFIPKIVGVLV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
LI+ P++ I SF + S +
Sbjct: 61 ALIVFGPWMLSIIISFAEQIFSNLHH 86
>gi|269963169|ref|ZP_06177504.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269832133|gb|EEZ86257.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 88
Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 54/84 (64%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN A+++ A+ +L S P + A +G L++ +QALTQ+QE TL FV K+IAV I
Sbjct: 1 MNPAEIIHFTTQALTLVLFLSLPPIVVAALVGTLVSLIQALTQVQEQTLGFVVKLIAVII 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
TL ++ ++G ++ +F TL L +I
Sbjct: 61 TLFVTTQWLGAELHAFATLALDKI 84
>gi|331269329|ref|YP_004395821.1| flagellar biosynthesis protein FliQ [Clostridium botulinum
BKT015925]
gi|329125879|gb|AEB75824.1| flagellar biosynthesis protein FliQ [Clostridium botulinum
BKT015925]
Length = 89
Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 56/86 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E V+ I + AM+T + +SAP+L ++ +G++I+ QA TQIQE TLTFVPK+I V +
Sbjct: 1 MSEEMVIGILKDAMYTGIMASAPILIVSIVIGLVISIFQATTQIQEQTLTFVPKLIGVAV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
+I+A F+ + F + + I +
Sbjct: 61 VGLITAKFMNHTVVGFTERIFAMIAN 86
>gi|167464151|ref|ZP_02329240.1| FliQ [Paenibacillus larvae subsp. larvae BRL-230010]
gi|322382377|ref|ZP_08056284.1| flagellar biosynthesis protein FliQ [Paenibacillus larvae subsp.
larvae B-3650]
gi|321153730|gb|EFX46105.1| flagellar biosynthesis protein FliQ [Paenibacillus larvae subsp.
larvae B-3650]
Length = 89
Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 51/69 (73%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ ++++A A++T+L +S P+L A+ +G+L++ QA TQIQE TL FVPKIIAV +
Sbjct: 1 MSSEFIIKLAGDAVYTVLKASGPMLIIALVVGLLVSIFQATTQIQEQTLAFVPKIIAVLL 60
Query: 61 TLIISAPFI 69
++II P+I
Sbjct: 61 SVIIFGPWI 69
>gi|134300234|ref|YP_001113730.1| flagellar biosynthetic protein FliQ [Desulfotomaculum reducens
MI-1]
gi|134052934|gb|ABO50905.1| flagellar biosynthetic protein FliQ [Desulfotomaculum reducens
MI-1]
Length = 89
Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 47/66 (71%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + VL +AR A+ ++ S P L AM +G++I QA TQIQE TL+FVPK++AVF+
Sbjct: 1 MTQTYVLHLAREALMMVVILSIPTLGVAMLVGLIIGIFQATTQIQEQTLSFVPKMVAVFL 60
Query: 61 TLIISA 66
TLI++A
Sbjct: 61 TLIVAA 66
>gi|237653573|ref|YP_002889887.1| flagellar biosynthesis protein FliQ [Thauera sp. MZ1T]
gi|237624820|gb|ACR01510.1| flagellar biosynthetic protein FliQ [Thauera sp. MZ1T]
Length = 89
Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 53/77 (68%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+E+ R A+ L SAP+ +A+ G++I+ QA TQI E+TL+FVPK++A+F+
Sbjct: 1 MTPTTVIELGRQAIEVTLMVSAPLFLAALVTGLIISIFQAATQINEMTLSFVPKLVAIFV 60
Query: 61 TLIISAPFIGGQISSFV 77
TL+++ P++ ++ F+
Sbjct: 61 TLVLAGPWMITLLTDFI 77
>gi|289578417|ref|YP_003477044.1| flagellar biosynthetic protein FliQ [Thermoanaerobacter italicus
Ab9]
gi|297544693|ref|YP_003676995.1| flagellar biosynthetic protein FliQ [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|289528130|gb|ADD02482.1| flagellar biosynthetic protein FliQ [Thermoanaerobacter italicus
Ab9]
gi|296842468|gb|ADH60984.1| flagellar biosynthetic protein FliQ [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
Length = 89
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 49/69 (71%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN V++I R A+ L+ + P+L A+ +G+LI+ QA TQIQE TL+FVPKI+A+ I
Sbjct: 1 MNTGVVIDIGREALTVTLTVATPLLAVALVVGLLISIFQATTQIQEQTLSFVPKIVAILI 60
Query: 61 TLIISAPFI 69
+LI+ P++
Sbjct: 61 SLILFGPWM 69
>gi|28898447|ref|NP_798052.1| translocation protein in type III secretion [Vibrio
parahaemolyticus RIMD 2210633]
gi|153836228|ref|ZP_01988895.1| translocation protein in type III secretion [Vibrio
parahaemolyticus AQ3810]
gi|260365109|ref|ZP_05777680.1| translocation protein in type III secretion [Vibrio
parahaemolyticus K5030]
gi|260876608|ref|ZP_05888963.1| translocation protein in type III secretion [Vibrio
parahaemolyticus AN-5034]
gi|260895031|ref|ZP_05903527.1| translocation protein in type III secretion [Vibrio
parahaemolyticus Peru-466]
gi|260900958|ref|ZP_05909353.1| translocation protein in type III secretion [Vibrio
parahaemolyticus AQ4037]
gi|28806664|dbj|BAC59936.1| translocation protein in type III secretion [Vibrio
parahaemolyticus RIMD 2210633]
gi|149750503|gb|EDM61248.1| translocation protein in type III secretion [Vibrio
parahaemolyticus AQ3810]
gi|308086015|gb|EFO35710.1| translocation protein in type III secretion [Vibrio
parahaemolyticus Peru-466]
gi|308093602|gb|EFO43297.1| translocation protein in type III secretion [Vibrio
parahaemolyticus AN-5034]
gi|308110801|gb|EFO48341.1| translocation protein in type III secretion [Vibrio
parahaemolyticus AQ4037]
gi|308111602|gb|EFO49142.1| translocation protein in type III secretion [Vibrio
parahaemolyticus K5030]
gi|328468940|gb|EGF39900.1| translocation protein in type III secretion [Vibrio
parahaemolyticus 10329]
Length = 88
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 54/84 (64%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN A+++ A+ +L S P + A +G L++ +QALTQ+QE TL FV K+IAV I
Sbjct: 1 MNPAEIIHFTTQALTLVLFLSLPPILVAALVGTLVSLIQALTQVQEQTLGFVVKLIAVII 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
TL I+ ++G ++ +F +L L +I
Sbjct: 61 TLFITTQWLGAELHAFASLALDKI 84
>gi|298530623|ref|ZP_07018025.1| flagellar biosynthetic protein FliQ [Desulfonatronospira
thiodismutans ASO3-1]
gi|298509997|gb|EFI33901.1| flagellar biosynthetic protein FliQ [Desulfonatronospira
thiodismutans ASO3-1]
Length = 89
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 55/86 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ AR A+ T L S P+L M +GI I+ LQA TQIQE+TLT VPKIIA+F+
Sbjct: 1 MTPEFVVGFARHAIETTLMISLPMLGIGMIVGITISILQAATQIQEMTLTIVPKIIAIFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
L+ S P+I ++ +F T + + I +
Sbjct: 61 ALLFSFPWIMEKMVTFTTDLFNNIPN 86
>gi|312135837|ref|YP_004003175.1| flagellar biosynthetic protein fliq [Caldicellulosiruptor
owensensis OL]
gi|311775888|gb|ADQ05375.1| flagellar biosynthetic protein FliQ [Caldicellulosiruptor
owensensis OL]
Length = 89
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 51/76 (67%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN VLEIAR A+ T + P+L +M +GI+I+ LQA TQI E TLTFVPK+IA+ +
Sbjct: 1 MNTELVLEIARQAILTAFYVAGPILLVSMVVGIVISILQAATQINEQTLTFVPKLIAIAL 60
Query: 61 TLIISAPFIGGQISSF 76
+L+I ++ ++ F
Sbjct: 61 SLLIFGQWMLAKVVEF 76
>gi|332294882|ref|YP_004436805.1| export protein FliQ family 3 [Thermodesulfobium narugense DSM
14796]
gi|332177985|gb|AEE13674.1| export protein FliQ family 3 [Thermodesulfobium narugense DSM
14796]
Length = 89
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 53/77 (68%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M++ L+++R AM +L +APVL A+F+G+ + QA TQ+Q++T++FVPK++AV +
Sbjct: 1 MSQGLALDLSRNAMLVLLLITAPVLLVALFIGLFLGIFQAATQLQDITISFVPKLLAVIV 60
Query: 61 TLIISAPFIGGQISSFV 77
+ + PF ++S++
Sbjct: 61 VMFLLGPFTLNVLTSYI 77
>gi|253682353|ref|ZP_04863150.1| flagellar biosynthetic protein FliQ [Clostridium botulinum D str.
1873]
gi|253562065|gb|EES91517.1| flagellar biosynthetic protein FliQ [Clostridium botulinum D str.
1873]
Length = 89
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 56/86 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E V+ I + AM+T + +SAP+L ++ +G++I+ QA TQIQE TLTFVPK+I V +
Sbjct: 1 MSEDMVIGILKDAMYTGIMASAPILIVSIVIGLVISIFQATTQIQEQTLTFVPKLIGVAV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
+I+A F+ + F + + I +
Sbjct: 61 IGLITAKFMNHTVVGFTERIFAMIAN 86
>gi|253996310|ref|YP_003048374.1| flagellar biosynthetic protein FliQ [Methylotenera mobilis JLW8]
gi|253982989|gb|ACT47847.1| flagellar biosynthetic protein FliQ [Methylotenera mobilis JLW8]
Length = 89
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 55/86 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + R AM L +AP+L + + +G+L++ QA TQI E TL+F+PK++ VF+
Sbjct: 1 MTPESVMTLGRDAMSITLMIAAPILLTVLAIGLLVSIFQAATQINEQTLSFIPKLVGVFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
L+++ P++ G + ++ LV + I +
Sbjct: 61 ALMLAGPWMLGTMVDYMHLVFTSIPA 86
>gi|302037619|ref|YP_003797941.1| flagellar biosynthetic protein FliQ [Candidatus Nitrospira
defluvii]
gi|300605683|emb|CBK42016.1| Flagellar biosynthetic protein FliQ, export component [Candidatus
Nitrospira defluvii]
Length = 89
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 57/86 (66%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V EI R A+ T + SAP+L ++ +G+L++ QA+TQI E TLTFVPK++AVF
Sbjct: 1 MTIETVTEIGRQAIETTMLVSAPILGLSLIVGLLVSTFQAMTQINEATLTFVPKVLAVFA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
++ P++ G + +F+T +++ I S
Sbjct: 61 ATLLFLPWMMGVLIAFMTHIITSIPS 86
>gi|312792664|ref|YP_004025587.1| flagellar biosynthetic protein fliq [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312876514|ref|ZP_07736497.1| flagellar biosynthetic protein FliQ [Caldicellulosiruptor
lactoaceticus 6A]
gi|311796725|gb|EFR13071.1| flagellar biosynthetic protein FliQ [Caldicellulosiruptor
lactoaceticus 6A]
gi|312179804|gb|ADQ39974.1| flagellar biosynthetic protein FliQ [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 89
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 55/86 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ A VLEIAR A+ T + P+L +M +GI+I+ LQA TQI E TLTFVPK+IA+ +
Sbjct: 1 MDTALVLEIARQAILTAFYVAGPILLVSMVVGIVISILQATTQINEQTLTFVPKLIAIAL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
+L+I ++ ++ F + + I
Sbjct: 61 SLLIFGQWMLTKVIEFTRYLWTNINQ 86
>gi|309388835|gb|ADO76715.1| flagellar biosynthetic protein FliQ [Halanaerobium praevalens DSM
2228]
Length = 89
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 53/88 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M EA VL+I R A++T++ PVL + + G+L+A QA TQIQE TL FVPKI AV
Sbjct: 1 MGEAVVLDIGRQALFTVIIVVFPVLGAGLITGLLVAIFQATTQIQEQTLAFVPKIFAVLG 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
++ P+I + FV +L I + L
Sbjct: 61 SIAFFGPWIMRTVIEFVQELLRNIPTYL 88
>gi|291613057|ref|YP_003523214.1| flagellar biosynthetic protein FliQ [Sideroxydans lithotrophicus
ES-1]
gi|291583169|gb|ADE10827.1| flagellar biosynthetic protein FliQ [Sideroxydans lithotrophicus
ES-1]
Length = 89
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 54/84 (64%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ I + A+ + SAP L +A+ +G+L++ QA TQI E+TL+F+PK++ F+
Sbjct: 1 MTPESVMTIGQQALELTIMVSAPPLLTALIIGLLVSIFQAATQINELTLSFIPKLLGAFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
LIIS P++ G + ++T + S I
Sbjct: 61 VLIISGPWMIGILLDYITRLFSSI 84
>gi|256370974|ref|YP_003108798.1| flagellar biosynthetic protein FliQ [Acidimicrobium ferrooxidans
DSM 10331]
gi|256007558|gb|ACU53125.1| flagellar biosynthetic protein FliQ [Acidimicrobium ferrooxidans
DSM 10331]
Length = 91
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 56/84 (66%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN+A VL+IAR A+ + PVL A+ +G+++A Q LTQIQE TL+FVPK+ A+ +
Sbjct: 1 MNDAAVLQIARTALEVATLVAGPVLAVALLVGLVVALAQTLTQIQEATLSFVPKLAAIAL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
L+ + ++ ++++ T + S+I
Sbjct: 61 VLLFTGHWMLQELTTMTTQLYSQI 84
>gi|172057872|ref|YP_001814332.1| flagellar biosynthetic protein FliQ [Exiguobacterium sibiricum
255-15]
gi|171990393|gb|ACB61315.1| flagellar biosynthetic protein FliQ [Exiguobacterium sibiricum
255-15]
Length = 90
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 60/84 (71%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + ++++A +A+WT+L SAP+L ++ +G+L++ LQA TQIQE TL+FVPKI+AVF+
Sbjct: 1 MTQEMIIQLASSAVWTLLKVSAPLLLVSLVVGLLVSILQATTQIQEQTLSFVPKIVAVFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
L+ P+I ++ +F + +I
Sbjct: 61 ALVFFGPWIMEELKTFTIEIFKQI 84
>gi|167040313|ref|YP_001663298.1| flagellar biosynthesis protein FliQ [Thermoanaerobacter sp. X514]
gi|256750757|ref|ZP_05491642.1| flagellar biosynthetic protein FliQ [Thermoanaerobacter
ethanolicus CCSD1]
gi|300914397|ref|ZP_07131713.1| flagellar biosynthetic protein FliQ [Thermoanaerobacter sp. X561]
gi|307724367|ref|YP_003904118.1| flagellar biosynthetic protein FliQ [Thermoanaerobacter sp. X513]
gi|166854553|gb|ABY92962.1| flagellar biosynthetic protein FliQ [Thermoanaerobacter sp. X514]
gi|256750340|gb|EEU63359.1| flagellar biosynthetic protein FliQ [Thermoanaerobacter
ethanolicus CCSD1]
gi|300889332|gb|EFK84478.1| flagellar biosynthetic protein FliQ [Thermoanaerobacter sp. X561]
gi|307581428|gb|ADN54827.1| flagellar biosynthetic protein FliQ [Thermoanaerobacter sp. X513]
Length = 89
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 49/69 (71%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN V++I R A+ L ++P+L A+ +G+LI+ QA TQIQE TL+FVPKI+A+ I
Sbjct: 1 MNTGVVIDIGREALTVALKVASPLLAVALGVGLLISIFQATTQIQEQTLSFVPKIVAILI 60
Query: 61 TLIISAPFI 69
+LI+ P++
Sbjct: 61 SLILFGPWM 69
>gi|17548595|ref|NP_521935.1| flagellar biosynthesis protein FliQ [Ralstonia solanacearum
GMI1000]
gi|17430843|emb|CAD17525.1| probable flagellar biosynthetic fliq transmembrane protein
[Ralstonia solanacearum GMI1000]
Length = 89
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 54/86 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M VL +AR AM + AP+L ++ +G+L+A QA TQ+ E TL+F+PK++AV
Sbjct: 1 MTPEYVLNMARQAMQVAMMIGAPMLLVSLIVGLLVAVFQAATQLNEQTLSFIPKLLAVAA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
T+I++ P++ G I + VL+ I +
Sbjct: 61 TMILAGPWVLGVIVDYTRDVLTNIPN 86
>gi|108757472|ref|YP_630668.1| FliQ/MopD/SpaQ family protein [Myxococcus xanthus DK 1622]
gi|108461352|gb|ABF86537.1| FliQ/MopD/SpaQ family protein [Myxococcus xanthus DK 1622]
Length = 87
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 49/75 (65%)
Query: 9 IARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPF 68
I + A++ +L +SAP + ++ +G +I+ QA TQIQE TLTF PK++AVF L ++ P+
Sbjct: 7 ITQEALFLVLVASAPPVLMSLLVGFIISLFQATTQIQEQTLTFAPKVVAVFGVLALAGPW 66
Query: 69 IGGQISSFVTLVLSR 83
IG Q+ F V R
Sbjct: 67 IGSQLVRFTFHVFDR 81
>gi|146312186|ref|YP_001177260.1| flagellar biosynthesis protein FliQ [Enterobacter sp. 638]
gi|145319062|gb|ABP61209.1| flagellar biosynthetic protein FliQ [Enterobacter sp. 638]
Length = 89
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 49/69 (71%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + AM +S +AP+L A+ G++I+ LQA TQI E+TL+F+PKIIAVF+
Sbjct: 1 MTPESVMMMGTEAMKVAISVAAPLLLVALVTGLVISILQAATQINEMTLSFIPKIIAVFV 60
Query: 61 TLIISAPFI 69
T+I++ P++
Sbjct: 61 TIIVAGPWM 69
>gi|89068704|ref|ZP_01156090.1| putative flagellar biosynthetic transmembrane protein [Oceanicola
granulosus HTCC2516]
gi|89045667|gb|EAR51729.1| putative flagellar biosynthetic transmembrane protein [Oceanicola
granulosus HTCC2516]
Length = 88
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 55/86 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ AD+ + A+ +L +SAPVL A+ +G+ IA QALTQIQE+TLTFVPKI+A+F+
Sbjct: 1 MSAADIYAVLSDAILAVLLASAPVLVVALVVGLGIALFQALTQIQEMTLTFVPKIVAIFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
L+ S PF+ + V I S
Sbjct: 61 ALLASLPFVYATLEGLSDTVFDLIVS 86
>gi|304316892|ref|YP_003852037.1| flagellar biosynthetic protein FliQ [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778394|gb|ADL68953.1| flagellar biosynthetic protein FliQ [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 89
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 49/69 (71%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ VL+I R A+ + SAP+L ++ +G++I+ QA TQIQE TLTFVPKI+A+F
Sbjct: 1 MDPGVVLDIGREALMVTMIVSAPLLIVSLLIGLIISIFQATTQIQEQTLTFVPKILAIFA 60
Query: 61 TLIISAPFI 69
++I+ P++
Sbjct: 61 SIILFGPWM 69
>gi|119384845|ref|YP_915901.1| export protein FliQ [Paracoccus denitrificans PD1222]
gi|119374612|gb|ABL70205.1| export protein FliQ, family 3 [Paracoccus denitrificans PD1222]
Length = 88
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 49/78 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E + ++ R A+W + SAP+L A+ G++I QALT +QE+TLTFVPKI + +
Sbjct: 1 MDENLIFDLTRQALWIAVRMSAPLLIVALVTGVVIGLFQALTSVQEMTLTFVPKIGLMLV 60
Query: 61 TLIISAPFIGGQISSFVT 78
+S F+ ++SF T
Sbjct: 61 VFWVSMSFMTATLASFFT 78
>gi|226313053|ref|YP_002772947.1| flagellar biosynthetic protein FliQ [Brevibacillus brevis NBRC
100599]
gi|226096001|dbj|BAH44443.1| flagellar biosynthetic protein FliQ [Brevibacillus brevis NBRC
100599]
Length = 89
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 52/69 (75%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + +++IA+++++TIL SAP L A+ +G++++ QA TQIQE TL F+PKI+AVF+
Sbjct: 1 MTQELLMQIAQSSVYTILLISAPALGVALLVGLMVSVFQATTQIQEQTLAFIPKIVAVFV 60
Query: 61 TLIISAPFI 69
++ + P++
Sbjct: 61 VILAAGPWM 69
>gi|167037652|ref|YP_001665230.1| flagellar biosynthesis protein FliQ [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|320116067|ref|YP_004186226.1| flagellar biosynthetic protein FliQ [Thermoanaerobacter brockii
subsp. finnii Ako-1]
gi|326389466|ref|ZP_08211033.1| flagellar biosynthetic protein FliQ [Thermoanaerobacter
ethanolicus JW 200]
gi|166856486|gb|ABY94894.1| flagellar biosynthetic protein FliQ [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|319929158|gb|ADV79843.1| flagellar biosynthetic protein FliQ [Thermoanaerobacter brockii
subsp. finnii Ako-1]
gi|325994471|gb|EGD52896.1| flagellar biosynthetic protein FliQ [Thermoanaerobacter
ethanolicus JW 200]
Length = 89
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 49/69 (71%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN V++I R A+ L+ + P+L A+ +G+LI+ QA TQIQE TL+FVPKI+A+ I
Sbjct: 1 MNTGMVIDIGREALTIALTVATPLLAVALGVGLLISIFQATTQIQEQTLSFVPKIVAILI 60
Query: 61 TLIISAPFI 69
+LI+ P++
Sbjct: 61 SLILFGPWM 69
>gi|323705430|ref|ZP_08117005.1| flagellar biosynthetic protein FliQ [Thermoanaerobacterium
xylanolyticum LX-11]
gi|323535332|gb|EGB25108.1| flagellar biosynthetic protein FliQ [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 89
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 49/69 (71%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ VL+I R A+ + SAP+L ++ +G++I+ QA TQIQE TLTFVPKI+A+F
Sbjct: 1 MDPGLVLDIGREALMVTMMVSAPLLIISLLVGLIISIFQATTQIQEQTLTFVPKILAIFA 60
Query: 61 TLIISAPFI 69
++I+ P++
Sbjct: 61 SIILFGPWM 69
>gi|261855325|ref|YP_003262608.1| flagellar biosynthetic protein FliQ [Halothiobacillus
neapolitanus c2]
gi|261835794|gb|ACX95561.1| flagellar biosynthetic protein FliQ [Halothiobacillus
neapolitanus c2]
Length = 89
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 54/84 (64%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ VL++ R AM IL S P+L +A+ +G+L+ QA TQI E+TL+F+PK+ AV +
Sbjct: 1 MSPDTVLDLTRQAMVIILLLSMPILLTALAVGLLVGMFQAATQINEMTLSFIPKLFAVVL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
++++ P++ + F T + RI
Sbjct: 61 AILLAGPWMLHLLVDFTTDLFHRI 84
>gi|158320530|ref|YP_001513037.1| flagellar biosynthetic protein FliQ [Alkaliphilus oremlandii
OhILAs]
gi|158140729|gb|ABW19041.1| flagellar biosynthetic protein FliQ [Alkaliphilus oremlandii
OhILAs]
Length = 89
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 49/69 (71%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E+ V+E+ + AM+TIL SAP L + +G+ ++ QA TQIQE TL F+PKI+A+
Sbjct: 1 MSESMVIELGQQAMFTILLLSAPTLLIGLIVGLAVSIFQATTQIQEATLAFIPKIVAILG 60
Query: 61 TLIISAPFI 69
+L++ P++
Sbjct: 61 SLVVFGPWL 69
>gi|302670737|ref|YP_003830697.1| flagellar biosynthetic protein FliQ [Butyrivibrio proteoclasticus
B316]
gi|302395210|gb|ADL34115.1| flagellar biosynthetic protein FliQ [Butyrivibrio proteoclasticus
B316]
Length = 90
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 54/79 (68%)
Query: 4 ADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLI 63
D+ EI +A++ ++ S PVL ++M +G++I+ Q +T IQE TLTFVPK++ VF+ ++
Sbjct: 5 GDINEIISSALFMVIKMSLPVLLTSMIIGLVISIFQTVTSIQEQTLTFVPKVLGVFVMIM 64
Query: 64 ISAPFIGGQISSFVTLVLS 82
I ++ +++ F+T + S
Sbjct: 65 ILGNWMATELAGFITTLWS 83
>gi|307264884|ref|ZP_07546446.1| flagellar biosynthetic protein FliQ [Thermoanaerobacter wiegelii
Rt8.B1]
gi|306920142|gb|EFN50354.1| flagellar biosynthetic protein FliQ [Thermoanaerobacter wiegelii
Rt8.B1]
Length = 89
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN V++I R A+ L + P+L A+ +G+LI+ QA TQIQE TL+FVPKI+A+ I
Sbjct: 1 MNTGMVIDIGREALTIALKVATPLLAVALGVGLLISIFQATTQIQEQTLSFVPKIVAILI 60
Query: 61 TLIISAPFI 69
+LI+ P++
Sbjct: 61 SLILFGPWM 69
>gi|117923327|ref|YP_863944.1| flagellar biosynthetic protein FliQ [Magnetococcus sp. MC-1]
gi|117607083|gb|ABK42538.1| flagellar biosynthetic protein FliQ [Magnetococcus sp. MC-1]
Length = 89
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 46/56 (82%)
Query: 21 SAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSF 76
SAP+L +A+ +GI I+ LQA+TQIQE+TLTF+PKI+A F+ L+++ P++ +++ +
Sbjct: 21 SAPMLLTALVVGITISLLQAVTQIQEMTLTFIPKILATFLALMLTLPWMIQKLTDY 76
>gi|298346007|ref|YP_003718694.1| flagellar biosynthesis protein FliQ [Mobiluncus curtisii ATCC
43063]
gi|304390235|ref|ZP_07372189.1| flagellar biosynthetic protein FliQ [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|315654595|ref|ZP_07907501.1| flagellar biosynthetic protein FliQ [Mobiluncus curtisii ATCC
51333]
gi|315657500|ref|ZP_07910382.1| flagellar biosynthetic protein FliQ [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
gi|298236068|gb|ADI67200.1| flagellar biosynthesis protein FliQ [Mobiluncus curtisii ATCC
43063]
gi|304326717|gb|EFL93961.1| flagellar biosynthetic protein FliQ [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|315491059|gb|EFU80678.1| flagellar biosynthetic protein FliQ [Mobiluncus curtisii ATCC
51333]
gi|315491972|gb|EFU81581.1| flagellar biosynthetic protein FliQ [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
Length = 90
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 46/66 (69%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN + VL++A AM SAP+L +++ +G LI+ Q++TQIQEVTLTFVPK +AV I
Sbjct: 1 MNSSAVLDLALTAMLMGAKLSAPILITSLVVGFLISLFQSITQIQEVTLTFVPKTVAVGI 60
Query: 61 TLIISA 66
L I+
Sbjct: 61 ALYITG 66
>gi|315498433|ref|YP_004087237.1| flagellar biosynthetic protein fliq [Asticcacaulis excentricus CB
48]
gi|315416445|gb|ADU13086.1| flagellar biosynthetic protein FliQ [Asticcacaulis excentricus CB
48]
Length = 87
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 54/84 (64%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +VL + R A+W + APVL + +G++I QALTQIQE TL + PKIIAVF+
Sbjct: 1 MTGTEVLSVGRDAIWLTIQLCAPVLIVGLVVGVVIGLFQALTQIQEQTLIYAPKIIAVFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
TL++ P +G +S F+ + ++I
Sbjct: 61 TLLLVLPLMGALLSGFMKEIATKI 84
>gi|91224469|ref|ZP_01259731.1| translocation protein in type III secretion [Vibrio alginolyticus
12G01]
gi|262394132|ref|YP_003285986.1| type III secretion protein YscS [Vibrio sp. Ex25]
gi|269967240|ref|ZP_06181304.1| translocation protein in type III secretion [Vibrio alginolyticus
40B]
gi|91190811|gb|EAS77078.1| translocation protein in type III secretion [Vibrio alginolyticus
12G01]
gi|262284524|gb|ACY41061.1| VscS [Vibrio alginolyticus]
gi|262337726|gb|ACY51521.1| type III secretion protein YscS [Vibrio sp. Ex25]
gi|269828096|gb|EEZ82366.1| translocation protein in type III secretion [Vibrio alginolyticus
40B]
Length = 88
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 54/84 (64%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ A+++ A+ +L S P + A +G L++ +QALTQ+QE TL FV K+IAV I
Sbjct: 1 MHSAEIIHFTTQALTLVLYLSLPPILVAALVGTLVSLIQALTQVQEQTLGFVVKLIAVII 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
TL ++ ++G ++ +F +L + +I
Sbjct: 61 TLFVTTQWLGAELHAFASLAMDKI 84
>gi|119899017|ref|YP_934230.1| flagellar biosynthesis protein FliQ [Azoarcus sp. BH72]
gi|119671430|emb|CAL95343.1| flagellar biosynthesis protein FliQ [Azoarcus sp. BH72]
Length = 89
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 52/77 (67%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+E+ R A+ L SAP+ +A+ G++I+ QA TQI E+TL+FVPKI+ +F+
Sbjct: 1 MTPTAVIELGRQAIEVTLLVSAPLFLAALVTGLIISIFQAATQINEMTLSFVPKIVVMFV 60
Query: 61 TLIISAPFIGGQISSFV 77
TL+++ P++ ++ F+
Sbjct: 61 TLVLAGPWMITMLTDFM 77
>gi|146296297|ref|YP_001180068.1| flagellar biosynthetic protein FliQ [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145409873|gb|ABP66877.1| flagellar biosynthetic protein FliQ [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 89
Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 54/86 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ A LEIAR A+ T + P+L +M +GI+I+ LQA TQI E TLTFVPK+IA+ +
Sbjct: 1 MDIAVALEIARQAILTAFYIAGPILIVSMIVGIVISILQATTQINEQTLTFVPKLIAIAV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
+L+I ++ + F +L+ I
Sbjct: 61 SLLIFGHWMLTKAVEFTKYLLTNINQ 86
>gi|284006887|emb|CBA72156.1| type III secretion component protein SctS [Arsenophonus nasoniae]
Length = 87
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 52/84 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN D + ++ ++W + S P + A +G L++ +QALTQIQE TL F+ K+ +V +
Sbjct: 1 MNSLDFIYLSEQSLWLVFMLSMPPIVVAAIVGTLVSLIQALTQIQEQTLGFLFKLTSVIV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
TL++ A ++G +I F L+ RI
Sbjct: 61 TLLMIADWLGNEIYRFTELIFQRI 84
>gi|312126836|ref|YP_003991710.1| flagellar biosynthetic protein fliq [Caldicellulosiruptor
hydrothermalis 108]
gi|311776855|gb|ADQ06341.1| flagellar biosynthetic protein FliQ [Caldicellulosiruptor
hydrothermalis 108]
Length = 89
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 54/86 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ VLEIAR A+ T + P+L +M +GI+++ LQA TQI E TLTFVPK+IA+ +
Sbjct: 1 MDTTLVLEIARQAILTAFYVAGPILLVSMVVGIVVSILQATTQINEQTLTFVPKLIAIAL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
+L+I ++ ++ F + + I
Sbjct: 61 SLLIFGQWMLTKVVEFTRYLWTNINQ 86
>gi|222530122|ref|YP_002574004.1| flagellar biosynthetic protein FliQ [Caldicellulosiruptor bescii
DSM 6725]
gi|222456969|gb|ACM61231.1| flagellar biosynthetic protein FliQ [Caldicellulosiruptor bescii
DSM 6725]
Length = 89
Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 54/86 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ VLEIAR A+ T + P+L +M +GI+I+ LQA TQI E TLTFVPK+IA+ +
Sbjct: 1 MDTTVVLEIARQAILTAFYVAGPILLISMVVGIVISILQATTQINEQTLTFVPKLIAIAL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
+L+I ++ ++ F + + I
Sbjct: 61 SLLIFGQWMLTKVIEFTRYLWTNINQ 86
>gi|332799192|ref|YP_004460691.1| flagellar biosynthetic protein FliQ [Tepidanaerobacter sp. Re1]
gi|332696927|gb|AEE91384.1| flagellar biosynthetic protein FliQ [Tepidanaerobacter sp. Re1]
Length = 89
Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 49/76 (64%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + V+ IAR A+ L SAP+L M +GI+++ QA TQIQE TLTFVPKII V
Sbjct: 1 MTQEMVIYIAREALSVALLVSAPMLLLGMLVGIIVSIFQATTQIQEQTLTFVPKIIVVMF 60
Query: 61 TLIISAPFIGGQISSF 76
+++I P++ I+ F
Sbjct: 61 SMVIFGPWMLTIITQF 76
>gi|160880830|ref|YP_001559798.1| flagellar biosynthetic protein FliQ [Clostridium phytofermentans
ISDg]
gi|160429496|gb|ABX43059.1| flagellar biosynthetic protein FliQ [Clostridium phytofermentans
ISDg]
Length = 89
Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 53/76 (69%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E ++E+ R ++ I+ S+P+L +++ +G++++ LQ +T +QE TLTFVPK+I VF+
Sbjct: 1 MDENLLVELLRQTLFLIIKVSSPMLITSLVIGLVVSVLQTVTSVQEQTLTFVPKLIGVFL 60
Query: 61 TLIISAPFIGGQISSF 76
L++ +I I+ +
Sbjct: 61 VLMLCGNWIMKNITEY 76
>gi|24215310|ref|NP_712791.1| endoflagellar biosynthesis pathway protein [Leptospira
interrogans serovar Lai str. 56601]
gi|45657251|ref|YP_001337.1| flagellar biosynthetic protein fliQ [Leptospira interrogans
serovar Copenhageni str. Fiocruz L1-130]
gi|24196411|gb|AAN49809.1| endoflagellar biosynthesis pathway protein [Leptospira
interrogans serovar Lai str. 56601]
gi|45600489|gb|AAS69974.1| flagellar biosynthetic protein fliQ [Leptospira interrogans
serovar Copenhageni str. Fiocruz L1-130]
Length = 87
Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 46/64 (71%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M E DV+ + R +++ L S+P+LF+A+ +G+++ LQ T IQE T+ FVPK++A+FI
Sbjct: 1 MTELDVMTLIRDSLYITLKISSPILFTALVVGLIVGILQTTTSIQEPTIAFVPKLLAIFI 60
Query: 61 TLII 64
++I
Sbjct: 61 VIVI 64
>gi|115377825|ref|ZP_01465013.1| flagellar biosynthetic protein FliQ [Stigmatella aurantiaca
DW4/3-1]
gi|310820308|ref|YP_003952666.1| bacterial export protein fliq, family 3 [Stigmatella aurantiaca
DW4/3-1]
gi|115365157|gb|EAU64204.1| flagellar biosynthetic protein FliQ [Stigmatella aurantiaca
DW4/3-1]
gi|309393380|gb|ADO70839.1| Bacterial export protein FliQ, family 3 [Stigmatella aurantiaca
DW4/3-1]
Length = 88
Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 48/75 (64%)
Query: 9 IARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPF 68
I + A++ +L SAP + ++ +G +IA QA TQIQE TLTF PK++ VFI L ++ P+
Sbjct: 7 ITQQALFLVLIVSAPPVLISLVVGFIIALFQATTQIQEQTLTFAPKVVIVFIVLAMAGPW 66
Query: 69 IGGQISSFVTLVLSR 83
IG Q+ F V R
Sbjct: 67 IGHQLLRFTFHVFDR 81
>gi|260222419|emb|CBA31964.1| Flagellar biosynthetic protein fliQ [Curvibacter putative
symbiont of Hydra magnipapillata]
Length = 89
Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 54/87 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN VL + + A+ +L SAPVL +A+ +G+L++ QA+TQI E TL FVPK++AV
Sbjct: 1 MNAQTVLTMGQEALLMLLMVSAPVLGAALVVGLLVSLFQAVTQIHEATLAFVPKLLAVIA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
I+ P++ + ++ +L I +S
Sbjct: 61 VFAIAGPWMLTMLVEYIRRMLEAIPAS 87
>gi|118592627|ref|ZP_01550017.1| Type III secretory pathway, component EscS [Stappia aggregata IAM
12614]
gi|118434678|gb|EAV41329.1| Type III secretory pathway, component EscS [Stappia aggregata IAM
12614]
Length = 89
Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 50/76 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M AD L + AM+ +L S P + +A +G+ ++ LQALTQIQE TL F K+IAV I
Sbjct: 1 MAPADALHVTTEAMFLVLLLSMPPILAASIVGLAVSLLQALTQIQEQTLPFAAKLIAVAI 60
Query: 61 TLIISAPFIGGQISSF 76
+L ++ ++GG++ +F
Sbjct: 61 SLAATSTYLGGEMYNF 76
>gi|332702321|ref|ZP_08422409.1| flagellar biosynthetic protein FliQ [Desulfovibrio africanus str.
Walvis Bay]
gi|332552470|gb|EGJ49514.1| flagellar biosynthetic protein FliQ [Desulfovibrio africanus str.
Walvis Bay]
Length = 89
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 55/88 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ AR A+ L+ S P+L M +GI ++ LQA TQIQE+TLTFVPKIIA+FI
Sbjct: 1 MTPEFVIGFARQAIELTLTISLPLLGIGMIVGIFVSVLQAATQIQEMTLTFVPKIIAIFI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L++ P+I ++ ++ +L S L
Sbjct: 61 ALLLFFPWIMDKMITYTRDLLINFPSYL 88
>gi|256833224|ref|YP_003161951.1| flagellar biosynthetic protein FliQ [Jonesia denitrificans DSM
20603]
gi|256686755|gb|ACV09648.1| flagellar biosynthetic protein FliQ [Jonesia denitrificans DSM
20603]
Length = 90
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 54/88 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ VL+I A+W AP+L +A+ +G I+ LQ++TQ+QEVTL+FVPK + V I
Sbjct: 1 MDTTAVLDIGLQALWLTAKLCAPILITALAVGFAISLLQSITQVQEVTLSFVPKALGVAI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+ IS ++ + +F + +RI + L
Sbjct: 61 VIYISGHWMIEETVAFTNEMFNRIPTLL 88
>gi|300693348|ref|YP_003749321.1| fliq: flagellar biosynthesis protein. fliq/mopd/spaq family
[Ralstonia solanacearum PSI07]
gi|299075385|emb|CBJ34680.1| FliQ: flagellar biosynthesis protein. fliQ/mopD/spaQ family
[Ralstonia solanacearum PSI07]
Length = 89
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 53/86 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M VL +AR AM + AP+L ++ +G+L+A QA TQ+ E TL+F+PK++AV
Sbjct: 1 MTPEYVLNMARQAMQVAMMIGAPMLLVSLIVGLLVAVFQAATQLNEQTLSFIPKLLAVAA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
T+I++ P++ G I + VL I +
Sbjct: 61 TMILAGPWVLGVIVDYTRDVLINIPN 86
>gi|329901240|ref|ZP_08272765.1| Flagellar biosynthesis protein fliQ [Oxalobacteraceae bacterium
IMCC9480]
gi|327549172|gb|EGF33764.1| Flagellar biosynthesis protein fliQ [Oxalobacteraceae bacterium
IMCC9480]
Length = 89
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 47/69 (68%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + R AM L +AP+L A+ +G++++ QA TQI E TL+F+PK++ +F+
Sbjct: 1 MTPESVMVMGRHAMEVTLMVAAPLLMVALLIGLIVSIFQAATQINEQTLSFIPKLVGIFV 60
Query: 61 TLIISAPFI 69
TL+I+ P++
Sbjct: 61 TLVIAGPWM 69
>gi|312621585|ref|YP_004023198.1| flagellar biosynthetic protein fliq [Caldicellulosiruptor
kronotskyensis 2002]
gi|312202052|gb|ADQ45379.1| flagellar biosynthetic protein FliQ [Caldicellulosiruptor
kronotskyensis 2002]
Length = 89
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 54/86 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ VLEIAR A+ T + P+L +M +GI+++ LQA TQI E TLTFVPK+IA+ +
Sbjct: 1 MDTTVVLEIARQAILTAFYVAGPILLISMVVGIVVSILQATTQINEQTLTFVPKLIAIAL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
+L+I ++ ++ F + + I
Sbjct: 61 SLLIFGQWMLTKVIEFTRYLWTNINQ 86
>gi|302872554|ref|YP_003841190.1| flagellar biosynthetic protein FliQ [Caldicellulosiruptor
obsidiansis OB47]
gi|302575413|gb|ADL43204.1| flagellar biosynthetic protein FliQ [Caldicellulosiruptor
obsidiansis OB47]
Length = 89
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 52/76 (68%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ + VLEIAR A+ T + P+L +M +GI+++ LQA TQI E TLTFVPK+IA+ +
Sbjct: 1 MDTSVVLEIARQAILTAFYVAGPILLVSMVVGIVVSILQATTQINEQTLTFVPKLIAIAL 60
Query: 61 TLIISAPFIGGQISSF 76
+L++ ++ ++ F
Sbjct: 61 SLLVFGQWMLTKVVEF 76
>gi|227876757|ref|ZP_03994866.1| flagellar biosynthesis protein FliQ [Mobiluncus mulieris ATCC
35243]
gi|269976284|ref|ZP_06183280.1| flagellar biosynthetic protein FliQ [Mobiluncus mulieris 28-1]
gi|306817704|ref|ZP_07451446.1| flagellar biosynthetic protein FliQ [Mobiluncus mulieris ATCC
35239]
gi|307701591|ref|ZP_07638608.1| putative flagellar biosynthetic protein FliQ [Mobiluncus mulieris
FB024-16]
gi|227842654|gb|EEJ52854.1| flagellar biosynthesis protein FliQ [Mobiluncus mulieris ATCC
35243]
gi|269935613|gb|EEZ92151.1| flagellar biosynthetic protein FliQ [Mobiluncus mulieris 28-1]
gi|304649518|gb|EFM46801.1| flagellar biosynthetic protein FliQ [Mobiluncus mulieris ATCC
35239]
gi|307613270|gb|EFN92522.1| putative flagellar biosynthetic protein FliQ [Mobiluncus mulieris
FB024-16]
Length = 90
Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 45/66 (68%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN A VL++A AM +APVL +++ +G +I+ Q++TQIQEVTLTFVPK IAV I
Sbjct: 1 MNSAAVLDLALTAMIMGAKLAAPVLITSLVVGFVISLFQSITQIQEVTLTFVPKTIAVGI 60
Query: 61 TLIISA 66
L I
Sbjct: 61 ALYICG 66
>gi|317151988|ref|YP_004120036.1| flagellar biosynthetic protein FliQ [Desulfovibrio aespoeensis
Aspo-2]
gi|316942239|gb|ADU61290.1| flagellar biosynthetic protein FliQ [Desulfovibrio aespoeensis
Aspo-2]
Length = 89
Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 51/78 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ AR A+ L S P+L M +GI I+ LQA TQIQE+TLT VPKI+A+FI
Sbjct: 1 MTPEFVVGFARQAIEITLVISLPMLGVGMIVGIFISVLQAATQIQEMTLTMVPKIVAIFI 60
Query: 61 TLIISAPFIGGQISSFVT 78
L+++ P+I ++ ++ T
Sbjct: 61 ALLVAFPWIMDKMMTYTT 78
>gi|220929451|ref|YP_002506360.1| flagellar biosynthetic protein FliQ [Clostridium cellulolyticum
H10]
gi|219999779|gb|ACL76380.1| flagellar biosynthetic protein FliQ [Clostridium cellulolyticum
H10]
Length = 89
Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 44/58 (75%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAV 58
M+E+ ++ IA+ A+ IL SAP+L +M +G++I+ QA TQIQE TLTFVPKI++V
Sbjct: 1 MDESGIINIAQDALKVILYVSAPILLISMIVGLVISIFQATTQIQEQTLTFVPKILSV 58
>gi|291529027|emb|CBK94613.1| Flagellar biosynthesis pathway, component FliQ [Eubacterium
rectale M104/1]
Length = 61
Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 46/60 (76%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
+ + VL+IAR A++T + +SAP+L ++ +G++++ Q +T IQE TLTFVPKIIA+F+
Sbjct: 2 ITQEAVLDIAREAIYTTIITSAPLLLISLIVGLIVSIFQTVTSIQEQTLTFVPKIIAIFL 61
>gi|83646011|ref|YP_434446.1| type III secretory pathway subunit EscS [Hahella chejuensis KCTC
2396]
gi|83634054|gb|ABC30021.1| Type III secretory pathway, component EscS [Hahella chejuensis
KCTC 2396]
Length = 89
Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 52/84 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M EADV++ A+ +L S P + A F G+L++ LQA+TQIQE TL F K++A+
Sbjct: 1 MTEADVIQYTTEALLLVLILSMPPILVATFTGVLVSLLQAVTQIQEQTLGFAVKLVAIVA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
TL ++A ++G ++ + LV I
Sbjct: 61 TLYLTARWLGMEMYQYTVLVFDAI 84
>gi|302343743|ref|YP_003808272.1| flagellar biosynthetic protein FliQ [Desulfarculus baarsii DSM
2075]
gi|301640356|gb|ADK85678.1| flagellar biosynthetic protein FliQ [Desulfarculus baarsii DSM
2075]
Length = 89
Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 54/86 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN ++ AR M L +APVL M +G+L++ Q++TQIQE+TLTFVPKI+AV +
Sbjct: 1 MNVDFIIGFARQGMEITLLMAAPVLGVGMVVGLLVSIFQSVTQIQEMTLTFVPKILAVMV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
L+ P++ ++ ++ ++ I +
Sbjct: 61 ALLFFGPWMLAKMMNYTESIIQNIPT 86
>gi|119503676|ref|ZP_01625759.1| flagellar biosynthesis protein Q [marine gamma proteobacterium
HTCC2080]
gi|119460738|gb|EAW41830.1| flagellar biosynthesis protein Q [marine gamma proteobacterium
HTCC2080]
Length = 89
Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 48/69 (69%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M VL++ R A+W + + P+L +A+ +G+ I +QA TQIQE+TL+F+PK++A+ +
Sbjct: 1 MGPETVLDLGRDALWLAVLLAGPLLGAALAVGLFIGVIQAATQIQEMTLSFIPKLLALVV 60
Query: 61 TLIISAPFI 69
TL + P++
Sbjct: 61 TLFVIGPWM 69
>gi|85058020|ref|YP_453722.1| flagellar biosynthesis protein FliQ [Sodalis glossinidius str.
'morsitans']
gi|84778540|dbj|BAE73317.1| flagellar protein FliQ [Sodalis glossinidius str. 'morsitans']
Length = 89
Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 56/88 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + AM L+ S P L +AM G+L++ LQA TQI E+TL+F+PKI+AV I
Sbjct: 1 MTPEAVMTLGFDAMKVGLALSTPPLLAAMVTGLLVSLLQASTQINEMTLSFIPKILAVII 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+L+I+ P++ + +V + S++ S+
Sbjct: 61 SLVIAGPWMLSLLLDYVRTLFSQLPYSI 88
>gi|323490155|ref|ZP_08095375.1| flagellar biosynthetic protein FliQ [Planococcus donghaensis
MPA1U2]
gi|323396203|gb|EGA89029.1| flagellar biosynthetic protein FliQ [Planococcus donghaensis
MPA1U2]
Length = 89
Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 51/69 (73%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+++A +++T++ SAP+L A+ +G+L++ QA+TQIQE TL F+PKI+AVFI
Sbjct: 1 MTPDMVIKLAEQSIFTVILISAPMLLIALAVGLLVSVFQAMTQIQEQTLAFIPKILAVFI 60
Query: 61 TLIISAPFI 69
L++ P++
Sbjct: 61 ALVVFGPWM 69
>gi|225181594|ref|ZP_03735035.1| flagellar biosynthetic protein FliQ [Dethiobacter alkaliphilus
AHT 1]
gi|225167702|gb|EEG76512.1| flagellar biosynthetic protein FliQ [Dethiobacter alkaliphilus
AHT 1]
Length = 89
Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 46/64 (71%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ VL +AR A+ T L +APVL ++ +G+ I+ QA TQIQE TLTFVPKIIAVF+
Sbjct: 1 MSHEFVLSVARDAILTTLFIAAPVLIISLLVGLGISVFQATTQIQEQTLTFVPKIIAVFL 60
Query: 61 TLII 64
L++
Sbjct: 61 ALLV 64
>gi|226327731|ref|ZP_03803249.1| hypothetical protein PROPEN_01604 [Proteus penneri ATCC 35198]
gi|225203435|gb|EEG85789.1| hypothetical protein PROPEN_01604 [Proteus penneri ATCC 35198]
Length = 89
Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 47/69 (68%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M VL + AM LS + P+L SA+ G++I+ LQA TQI E+TL+F+PKI+AV +
Sbjct: 1 MTPESVLALGTEAMKIALSLAGPLLLSALVTGLVISMLQAATQINEMTLSFIPKILAVLV 60
Query: 61 TLIISAPFI 69
++++ P++
Sbjct: 61 AILVAGPWM 69
>gi|326204609|ref|ZP_08194465.1| flagellar biosynthetic protein FliQ [Clostridium papyrosolvens
DSM 2782]
gi|325985176|gb|EGD46016.1| flagellar biosynthetic protein FliQ [Clostridium papyrosolvens
DSM 2782]
Length = 89
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 44/58 (75%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAV 58
M+E+ ++ IA+ A+ IL SAP+L +M +G++I+ QA TQIQE TLTFVPKI++V
Sbjct: 1 MDESSIINIAQEALKVILYVSAPILVISMVVGLVISIFQATTQIQEQTLTFVPKILSV 58
>gi|167630308|ref|YP_001680807.1| flagellar biosynthetic protein fliq, putative [Heliobacterium
modesticaldum Ice1]
gi|167593048|gb|ABZ84796.1| flagellar biosynthetic protein fliq, putative [Heliobacterium
modesticaldum Ice1]
Length = 91
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 56/86 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+++ R A+ +L SAP+L +++ +G++I+ QA TQIQE TLTFVPKIIAV +
Sbjct: 1 MTPELVIQLGRDALAAVLLISAPLLGASLLVGLVISVFQATTQIQEATLTFVPKIIAVLV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
+++ P++ + +V +L + +
Sbjct: 61 VILLFGPWMLEAMMKYVDQMLGSLNT 86
>gi|327399032|ref|YP_004339901.1| flagellar biosynthetic protein FliQ [Hippea maritima DSM 10411]
gi|327181661|gb|AEA33842.1| flagellar biosynthetic protein FliQ [Hippea maritima DSM 10411]
Length = 89
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 56/86 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ A V+ I + AM + + P+L ++ G+L++ QA+TQIQE+TLTF+PKIIA +
Sbjct: 1 MDIATVIAIGKEAMKVTMLIAMPILIVSLIAGLLVSIFQAVTQIQEMTLTFIPKIIATAV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
T+I AP++ + ++V + S I +
Sbjct: 61 TVIFLAPWMTKLLVNYVIHLYSSIPT 86
>gi|254417849|ref|ZP_05031573.1| flagellar biosynthetic protein FliQ [Brevundimonas sp. BAL3]
gi|196184026|gb|EDX79002.1| flagellar biosynthetic protein FliQ [Brevundimonas sp. BAL3]
Length = 87
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 55/84 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN A+VL++ R A+W + PVL + +G++I QALTQIQE TL + PKIIA+F+
Sbjct: 1 MNGAEVLDVGRDAIWLTIQLCLPVLLVGLVVGVVIGLFQALTQIQEQTLIYAPKIIAIFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
+L++ P +G + F+ + +RI
Sbjct: 61 SLLLFLPLMGALLGGFMRQIAARI 84
>gi|88704276|ref|ZP_01101990.1| Bacterial export protein FliQ, family 3 [Congregibacter litoralis
KT71]
gi|88701327|gb|EAQ98432.1| Bacterial export protein FliQ, family 3 [Congregibacter litoralis
KT71]
Length = 89
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 47/69 (68%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M VL + + A+W + + P+L SA+ +G+LI QA TQIQE+TL+F+PK++A+ +
Sbjct: 1 MGPETVLAVGQDALWLAVLLAGPLLLSALAVGLLIGIFQAATQIQEMTLSFIPKLLALVV 60
Query: 61 TLIISAPFI 69
L ++ P++
Sbjct: 61 ALFVAGPWM 69
>gi|304414277|ref|ZP_07395645.1| type III secretion system apparatus protein [Candidatus Regiella
insecticola LSR1]
gi|304283491|gb|EFL91887.1| type III secretion system apparatus protein [Candidatus Regiella
insecticola LSR1]
Length = 89
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 57/86 (66%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+EA V+++A +W +L S PV+ A +G++I+ QALTQIQ+ TL F+ K++AV I
Sbjct: 1 MSEAIVVQLATQVLWIVLMLSMPVVVVASAVGLIISLFQALTQIQDQTLQFLIKLLAVSI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
TL++S ++G + ++ V +I S
Sbjct: 61 TLLVSYHWMGSTLLNYTQQVFLQIGS 86
>gi|327441039|dbj|BAK17404.1| flagellar biosynthesis pathway, component FliQ [Solibacillus
silvestris StLB046]
Length = 89
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 53/84 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + V+ IA A++TIL S P+L A+ G++++ QA T IQE TL FVPKI+AV +
Sbjct: 1 MTQEMVIAIAENAVFTILIVSGPLLLIALISGLIVSIFQATTSIQEQTLAFVPKIVAVLV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
+I PF+ +++ + +L+ +
Sbjct: 61 AIIFFGPFMISKMTDYFHDILNNL 84
>gi|224370773|ref|YP_002604937.1| FliQ [Desulfobacterium autotrophicum HRM2]
gi|223693490|gb|ACN16773.1| FliQ [Desulfobacterium autotrophicum HRM2]
Length = 89
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 54/84 (64%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+E A+ A+ + S P+L + G++I+ QA+T IQE+TLTFVPKIIAVF+
Sbjct: 1 MTPEFVIEFAKQAILLTIYLSMPMLGLGLAAGLIISIFQAVTSIQEMTLTFVPKIIAVFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
L+ AP++ +++SF V+ I
Sbjct: 61 GLLFFAPWMLDEMTSFTRRVIENI 84
>gi|220915855|ref|YP_002491159.1| type III secretion protein, HrpO family [Anaeromyxobacter
dehalogenans 2CP-1]
gi|219953709|gb|ACL64093.1| type III secretion protein, HrpO family [Anaeromyxobacter
dehalogenans 2CP-1]
Length = 88
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ A +L + R A+ +L SAP L +A+ +G++ LQA TQ+QE TL VP+++AV I
Sbjct: 1 MDPA-LLHLGREALLLVLVLSAPPLGAALLVGLVTGVLQAATQVQEQTLGVVPRLVAVVI 59
Query: 61 TLIISAPFIGGQISSF 76
+L I+AP+IG + F
Sbjct: 60 SLAIAAPWIGARAVRF 75
>gi|288942624|ref|YP_003444864.1| flagellar biosynthetic protein FliQ [Allochromatium vinosum DSM
180]
gi|288897996|gb|ADC63832.1| flagellar biosynthetic protein FliQ [Allochromatium vinosum DSM
180]
Length = 89
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 52/86 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M VL++ + A I+ SAP L + + +G++I+ QA TQIQE+TLTF+PK++ V
Sbjct: 1 MTPEMVLDVGKEAGEVIILMSAPPLLAGLIIGLIISLFQAATQIQEMTLTFIPKLVGVGA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
LI + P++ ++ +VT + I
Sbjct: 61 ALIFAGPWMLTLVTDYVTRLYESIPG 86
>gi|311030114|ref|ZP_07708204.1| flagellar biosynthesis protein FliQ [Bacillus sp. m3-13]
Length = 89
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 54/85 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ V+ +A ++TIL SAP+L A+ +G++++ QA TQIQE TL F+PKI+AV +
Sbjct: 1 MSPEFVISMAERGVYTILLISAPLLILALVVGLIVSIFQATTQIQEQTLAFIPKIVAVLV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
L++ P++ + S+ + + I
Sbjct: 61 GLVVFGPWMLSNMLSYALEIFNNIH 85
>gi|323700134|ref|ZP_08112046.1| flagellar biosynthetic protein FliQ [Desulfovibrio sp. ND132]
gi|323460066|gb|EGB15931.1| flagellar biosynthetic protein FliQ [Desulfovibrio desulfuricans
ND132]
Length = 89
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 52/78 (66%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ AR A+ L S P+L M +GI I+ +QA TQIQE+TLT VPKIIA+F+
Sbjct: 1 MTPEFVVGFARQAIEMTLIISLPMLGIGMIVGIFISIIQAATQIQEMTLTMVPKIIAIFL 60
Query: 61 TLIISAPFIGGQISSFVT 78
L+++ P+I +++++ T
Sbjct: 61 ALLLAFPWIMDKMTAYTT 78
>gi|73539700|ref|YP_300067.1| flagellar biosynthesis protein FliQ [Ralstonia eutropha JMP134]
gi|72123037|gb|AAZ65223.1| Flagellar biosynthesis protein FliQ [Ralstonia eutropha JMP134]
Length = 89
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 53/86 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ IA AM L +AP L A+ G++++ QA TQI E+TLTF+PK++A+F
Sbjct: 1 MTPETVMTIATHAMKMTLMLAAPPLLVALAAGLVVSLFQAATQINEMTLTFIPKLVALFA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
TL+++ P++ + ++ VL I +
Sbjct: 61 TLVLAGPWMINTMVDYMREVLQSIPA 86
>gi|269796381|ref|YP_003315836.1| flagellar biosynthetic protein FliQ [Sanguibacter keddieii DSM
10542]
gi|269098566|gb|ACZ23002.1| flagellar biosynthetic protein FliQ [Sanguibacter keddieii DSM
10542]
Length = 90
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ + VL+I + APVL +A+ +G ++ LQ++TQIQEVTL+FVPK IAV +
Sbjct: 1 MDTSAVLDIGVQGLIIAAKLCAPVLITALVVGFAVSLLQSITQIQEVTLSFVPKAIAVSL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
L+IS ++ ++ SF + RI
Sbjct: 61 ALLISGHWMISEMISFTHELFGRI 84
>gi|296439625|sp|P0CF98|FLIQ_CLOTE RecName: Full=Flagellar biosynthetic protein FliQ
Length = 89
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 43/58 (74%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAV 58
M+E ++ + R A+ T L SAP+L SA+ +G+LI+ LQA TQIQE TLTFVPK+I V
Sbjct: 1 MSENMIMGVMRDAISTGLLVSAPILISAIVVGLLISILQATTQIQEQTLTFVPKLITV 58
>gi|121533745|ref|ZP_01665572.1| flagellar biosynthetic protein FliQ [Thermosinus carboxydivorans
Nor1]
gi|121307736|gb|EAX48651.1| flagellar biosynthetic protein FliQ [Thermosinus carboxydivorans
Nor1]
Length = 89
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 46/63 (73%)
Query: 7 LEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISA 66
++I R A+ ++ SAP+L + +GI+I+ QA TQIQE TL+FVPKIIAVF+ +++
Sbjct: 7 IQIGRDALMMVMLVSAPMLGLGLLVGIIISIFQATTQIQEQTLSFVPKIIAVFVAILLFG 66
Query: 67 PFI 69
P++
Sbjct: 67 PWM 69
>gi|187926924|ref|YP_001893269.1| flagellar biosynthetic protein FliQ [Ralstonia pickettii 12J]
gi|241665253|ref|YP_002983612.1| flagellar biosynthesis protein FliQ [Ralstonia pickettii 12D]
gi|187728678|gb|ACD29842.1| flagellar biosynthetic protein FliQ [Ralstonia pickettii 12J]
gi|240867280|gb|ACS64940.1| flagellar biosynthetic protein FliQ [Ralstonia pickettii 12D]
Length = 89
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 54/86 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M VL++AR AM + AP+L ++ +G+L+A QA TQ+ E +L+F+PK++AV
Sbjct: 1 MTPEYVLDMARQAMQVAMMVGAPMLLVSLIVGLLVAVFQAATQLNEQSLSFIPKLLAVAA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
T++++ P+I I + +L+ I S
Sbjct: 61 TMVLAGPWILSVIVDYTRNLLTNIPS 86
>gi|261340414|ref|ZP_05968272.1| flagellar biosynthetic protein FliQ [Enterobacter cancerogenus
ATCC 35316]
gi|288317506|gb|EFC56444.1| flagellar biosynthetic protein FliQ [Enterobacter cancerogenus
ATCC 35316]
Length = 89
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 48/69 (69%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + AM ++ +AP+L A+ G++I+ LQA TQI E+TL+F+PKIIAVF+
Sbjct: 1 MTPESVMMMGTEAMRVAIAVAAPLLLVALVTGLVISILQAATQINEMTLSFIPKIIAVFV 60
Query: 61 TLIISAPFI 69
+I++ P++
Sbjct: 61 AIIVAGPWM 69
>gi|149178713|ref|ZP_01857296.1| flagellar biosynthesis protein Q [Planctomyces maris DSM 8797]
gi|148842411|gb|EDL56791.1| flagellar biosynthesis protein Q [Planctomyces maris DSM 8797]
Length = 88
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 58/88 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ + VL++ R + +L S PV+ +A+ +G++I+ QA+TQIQ+ T++FVPKII + +
Sbjct: 1 MDTSTVLDLGREGLLIMLEVSGPVMLTAVVVGLVISIGQAVTQIQDQTISFVPKIIMMVL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
++ + P+I + + T +++ I + L
Sbjct: 61 AILYTLPWITSLMVEYSTNLITNIPTRL 88
>gi|253998479|ref|YP_003050542.1| flagellar biosynthetic protein FliQ [Methylovorus sp. SIP3-4]
gi|313200554|ref|YP_004039212.1| flagellar biosynthetic protein fliq [Methylovorus sp. MP688]
gi|253985158|gb|ACT50015.1| flagellar biosynthetic protein FliQ [Methylovorus sp. SIP3-4]
gi|312439870|gb|ADQ83976.1| flagellar biosynthetic protein FliQ [Methylovorus sp. MP688]
Length = 89
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 44/69 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + R AM L SAP+L + +G+L++ QA TQI E TL+F+PK++ VF
Sbjct: 1 MTPEGVMTLGRQAMEVTLMVSAPMLIVVLVIGLLVSIFQAATQINETTLSFIPKLVGVFA 60
Query: 61 TLIISAPFI 69
L+I+ P++
Sbjct: 61 VLVIAGPWM 69
>gi|114797953|ref|YP_759003.1| flagellar biosynthetic protein fliQ [Hyphomonas neptunium ATCC
15444]
gi|114738127|gb|ABI76252.1| flagellar biosynthetic protein fliQ [Hyphomonas neptunium ATCC
15444]
Length = 87
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 44/69 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E ++ E+ RA +W P+L + +G +I +QALT IQE+TLTF+PKI+AV I
Sbjct: 1 MSEGEIFEVLRAHIWGAAMMGLPILAVTLVVGFVIGLIQALTSIQEMTLTFIPKILAVII 60
Query: 61 TLIISAPFI 69
+S ++
Sbjct: 61 VFFLSLGYM 69
>gi|218288311|ref|ZP_03492610.1| flagellar biosynthetic protein FliQ [Alicyclobacillus
acidocaldarius LAA1]
gi|258511389|ref|YP_003184823.1| flagellar biosynthetic protein FliQ [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
gi|218241670|gb|EED08843.1| flagellar biosynthetic protein FliQ [Alicyclobacillus
acidocaldarius LAA1]
gi|257478115|gb|ACV58434.1| flagellar biosynthetic protein FliQ [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
Length = 89
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 50/84 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + V+ +A MW ++ +APVL + +G++++ QA TQ+QE TL F+PKIIAV I
Sbjct: 1 MTDTYVIGLAAQVMWLVVKITAPVLLLGLAMGLVVSIFQATTQLQEQTLAFIPKIIAVVI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
L+ P++ + F +L +
Sbjct: 61 ALLAFGPWMLQNLIDFTNSILGNL 84
>gi|329849684|ref|ZP_08264530.1| flagellar biosynthetic protein FliQ [Asticcacaulis biprosthecum
C19]
gi|328841595|gb|EGF91165.1| flagellar biosynthetic protein FliQ [Asticcacaulis biprosthecum
C19]
Length = 87
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 37/59 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVF 59
M+ A+VL + R A+W + P+L + +G+ I QALTQIQE TL + PKII +F
Sbjct: 1 MSGAEVLGVGRDAIWLTIQLCTPILLVGLVVGVAIGLFQALTQIQEATLIYAPKIICIF 59
>gi|148240968|ref|YP_001220469.1| flagellar biosynthetic protein fliQ [Bradyrhizobium sp. BTAi1]
gi|146411344|gb|ABQ39797.1| Flagellar biosynthetic protein fliQ [Bradyrhizobium sp. BTAi1]
Length = 89
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN+ +V+ A A+ T++ SAP+L +G+ ++ QALTQIQE TL PKI A F+
Sbjct: 1 MNDLEVMSAAHDAVMTVVVISAPLLIVGTVVGVAVSLFQALTQIQEQTLIQAPKIFATFL 60
Query: 61 TLIISAPFIG 70
T +I+ PF+
Sbjct: 61 TFLIALPFMA 70
>gi|283853452|ref|ZP_06370696.1| flagellar biosynthetic protein FliQ [Desulfovibrio sp. FW1012B]
gi|283571172|gb|EFC19188.1| flagellar biosynthetic protein FliQ [Desulfovibrio sp. FW1012B]
Length = 89
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 58/81 (71%)
Query: 6 VLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIIS 65
V+ ++R A+ T L + P+L ++ +G++I+ LQA TQIQE+TLTFVPKI+++FI L+I+
Sbjct: 6 VVALSRQAIETALFLALPMLGVSLVVGVIISVLQAATQIQEMTLTFVPKILSMFIALLIA 65
Query: 66 APFIGGQISSFVTLVLSRIQS 86
P++ ++ +F +L I +
Sbjct: 66 FPWMMDKMLNFTRELLMNIPT 86
>gi|197121154|ref|YP_002133105.1| type III secretion protein, HrpO family [Anaeromyxobacter sp. K]
gi|196171003|gb|ACG71976.1| type III secretion protein, HrpO family [Anaeromyxobacter sp. K]
Length = 88
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ A +L + R A+ +L SAP L +A+ +G++ LQA TQ+QE TL VP+++AV I
Sbjct: 1 MDPA-LLHLGREALLLVLVLSAPPLGAALLVGLVTGVLQAATQVQEQTLGVVPRLVAVVI 59
Query: 61 TLIISAPFIGGQISSF 76
L I+AP+IG + F
Sbjct: 60 VLAITAPWIGARAVRF 75
>gi|205373390|ref|ZP_03226194.1| flagellar biosynthesis protein FliQ [Bacillus coahuilensis m4-4]
Length = 89
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 56/86 (65%), Gaps = 3/86 (3%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN V+++A ++T L SAP+L A+ +G++++ QA TQIQE TL FVPKI+AV +
Sbjct: 1 MNAETVIKLAEQGVYTTLIISAPLLLLALIVGLIVSIFQATTQIQEQTLAFVPKIVAVMV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
LI P++ +++ VT L+ Q+
Sbjct: 61 GLIFFGPWM---LTTLVTYTLNIFQN 83
>gi|296103569|ref|YP_003613715.1| flagellar biosynthesis protein FliQ [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295058028|gb|ADF62766.1| flagellar biosynthesis protein FliQ [Enterobacter cloacae subsp.
cloacae ATCC 13047]
Length = 89
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 48/69 (69%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + AM ++ +AP+L A+ G++I+ LQA TQI E+TL+F+PKIIAVF+
Sbjct: 1 MTPESVMMMGTEAMKIAIAVAAPLLLVALVTGLIISILQAATQINEMTLSFIPKIIAVFV 60
Query: 61 TLIISAPFI 69
+I++ P++
Sbjct: 61 AIIVAGPWM 69
>gi|89069820|ref|ZP_01157155.1| flagellar biosynthetic protein FliQ [Oceanicola granulosus
HTCC2516]
gi|89044621|gb|EAR50737.1| flagellar biosynthetic protein FliQ [Oceanicola granulosus
HTCC2516]
Length = 88
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E+ ++ R +W ++ S P+L A+ G+ + QALT IQE+TLTFVPK+ A+
Sbjct: 1 MSESHFYDVVRHGLWVAVAMSLPILSVALVAGLAVGLFQALTSIQEMTLTFVPKLAAIVA 60
Query: 61 TLIISAPFIGGQISSFV--TLVL 81
++ F+ G +++F TLVL
Sbjct: 61 IFWVTMGFMTGTLTAFFRDTLVL 83
>gi|154686053|ref|YP_001421214.1| flagellar biosynthesis protein FliQ [Bacillus amyloliquefaciens
FZB42]
gi|154351904|gb|ABS73983.1| FliQ [Bacillus amyloliquefaciens FZB42]
Length = 89
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 52/85 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ V+ +A A++ L S P+L A+ +G+L++ QA TQIQE TL F+PKI+AV +
Sbjct: 1 MSSEFVISMAEKAVYVTLMISGPLLAIALIVGLLVSIFQATTQIQEQTLAFIPKIVAVML 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
LI P++ I SF T + S +
Sbjct: 61 GLIFFGPWMLSTILSFTTDLFSHLN 85
>gi|328958269|ref|YP_004375655.1| flagellar biosynthesis protein FliQ [Carnobacterium sp. 17-4]
gi|328674593|gb|AEB30639.1| flagellar biosynthesis protein FliQ [Carnobacterium sp. 17-4]
Length = 87
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 46/68 (67%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M VL+I R A +++ + P L A+ +G++I+ +QA TQ+QE TL+FVPKI+AV +
Sbjct: 1 MTTVKVLDIIREAFMVMITVAGPTLIIALVIGLIISIIQATTQLQEQTLSFVPKILAVIV 60
Query: 61 TLIISAPF 68
+LII F
Sbjct: 61 SLIIFGNF 68
>gi|157692316|ref|YP_001486778.1| flagellar biosynthesis protein FliQ [Bacillus pumilus SAFR-032]
gi|194014415|ref|ZP_03053032.1| flagellar biosynthetic protein FliQ [Bacillus pumilus ATCC 7061]
gi|157681074|gb|ABV62218.1| flagellar biosynthesis protein FliQ [Bacillus pumilus SAFR-032]
gi|194013441|gb|EDW23006.1| flagellar biosynthetic protein FliQ [Bacillus pumilus ATCC 7061]
Length = 89
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ V+ +A +++ +L S P+L A+ +G++++ QA TQIQE TL F+PKI+AV I
Sbjct: 1 MSSEFVITMAERSVYVVLLVSGPLLALALIVGLIVSVFQATTQIQEQTLAFIPKIVAVLI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
L++ P++ I SF T + S +
Sbjct: 61 GLVVFGPWMLSTIVSFTTELFSNLD 85
>gi|326319060|ref|YP_004236732.1| flagellar biosynthetic protein FliQ [Acidovorax avenae subsp.
avenae ATCC 19860]
gi|323375896|gb|ADX48165.1| flagellar biosynthetic protein FliQ [Acidovorax avenae subsp.
avenae ATCC 19860]
Length = 89
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M VL + R A+ +L S PVL + M +G+L++ QA+TQIQE TL FVPK+IA +
Sbjct: 1 MTSQMVLTMGRDALTLLLMVSMPVLGAVMVIGLLVSIFQAVTQIQEATLAFVPKLIAAMV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
++ P++ I+S V + I+S
Sbjct: 61 VFAVAGPWM---ITSLVDYIRRTIES 83
>gi|197285500|ref|YP_002151372.1| flagellar biosynthetic protein [Proteus mirabilis HI4320]
gi|227355991|ref|ZP_03840383.1| flagellar biosynthetic protein [Proteus mirabilis ATCC 29906]
gi|194682987|emb|CAR43423.1| flagellar biosynthetic protein [Proteus mirabilis HI4320]
gi|227163979|gb|EEI48881.1| flagellar biosynthetic protein [Proteus mirabilis ATCC 29906]
Length = 89
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 46/69 (66%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M VL + AM LS + P+L SA+ G++I+ LQA TQI E+TL+F+PKI+AV
Sbjct: 1 MTPESVLALGTEAMKIALSLAGPLLLSALVTGLVISMLQAATQINEMTLSFIPKILAVLA 60
Query: 61 TLIISAPFI 69
++++ P++
Sbjct: 61 AILVAGPWM 69
>gi|254510132|ref|ZP_05122199.1| flagellar biosynthetic protein FliQ [Rhodobacteraceae bacterium
KLH11]
gi|221533843|gb|EEE36831.1| flagellar biosynthetic protein FliQ [Rhodobacteraceae bacterium
KLH11]
Length = 90
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 48/78 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
++E +I R A+W + +S P+L A+ G+ + QALT +QE+TLTFVPK+IA+ I
Sbjct: 2 LSEGLFYDIVRQALWVAVITSVPILAVALISGLAVGLFQALTSVQEMTLTFVPKLIAIVI 61
Query: 61 TLIISAPFIGGQISSFVT 78
IS F+ + +F T
Sbjct: 62 VFWISMGFMTQTLVTFFT 79
>gi|282891200|ref|ZP_06299703.1| type III secretion inner membrane protein SctS [Parachlamydia
acanthamoebae str. Hall's coccus]
gi|281498893|gb|EFB41209.1| type III secretion inner membrane protein SctS [Parachlamydia
acanthamoebae str. Hall's coccus]
Length = 92
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 50/83 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ V+++A + IL SAP + +MF GIL+A QA TQIQE TL+F K+ AV +
Sbjct: 1 MHATQVIQLAYQGLLLILILSAPPILVSMFFGILVAIFQAATQIQEQTLSFTVKLCAVTL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSR 83
TL+ ++G QI +F + +
Sbjct: 61 TLMFLGGWLGAQIMTFASNIFQH 83
>gi|304321147|ref|YP_003854790.1| flagellar biosynthetic protein FliQ [Parvularcula bermudensis
HTCC2503]
gi|303300049|gb|ADM09648.1| flagellar biosynthetic protein FliQ [Parvularcula bermudensis
HTCC2503]
Length = 87
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 49/71 (69%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
+ +A ++++ R A+ T SAP+L +A+ G+++ LQALT +QE+TLTFVPK+ A+ +
Sbjct: 2 LTDAQIIDLTREAVMTAALMSAPLLIAALVAGLIVGLLQALTSVQELTLTFVPKVAAMLL 61
Query: 61 TLIISAPFIGG 71
+++ F+ G
Sbjct: 62 VFALTSSFMVG 72
>gi|153953790|ref|YP_001394555.1| hypothetical protein CKL_1165 [Clostridium kluyveri DSM 555]
gi|146346671|gb|EDK33207.1| FliQ [Clostridium kluyveri DSM 555]
Length = 89
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 55/84 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E V+ I + A+ T L SAP+L ++ +G++I+ QA TQIQE TLTFVPK+IAV I
Sbjct: 1 MSENMVMGIIKDAIQTGLLISAPILIISILVGLIISIFQATTQIQEQTLTFVPKLIAVAI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
+++ ++ QI SF + + I
Sbjct: 61 IGLLTGSWMLHQIVSFTERIFTYI 84
>gi|219854406|ref|YP_002471528.1| hypothetical protein CKR_1063 [Clostridium kluyveri NBRC 12016]
gi|219568130|dbj|BAH06114.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 92
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 55/84 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E V+ I + A+ T L SAP+L ++ +G++I+ QA TQIQE TLTFVPK+IAV I
Sbjct: 4 MSENMVMGIIKDAIQTGLLISAPILIISILVGLIISIFQATTQIQEQTLTFVPKLIAVAI 63
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
+++ ++ QI SF + + I
Sbjct: 64 IGLLTGSWMLHQIVSFTERIFTYI 87
>gi|297620336|ref|YP_003708473.1| type III secretion inner membrane protein SctS [Waddlia
chondrophila WSU 86-1044]
gi|297375637|gb|ADI37467.1| type III secretion inner membrane protein SctS [Waddlia
chondrophila WSU 86-1044]
Length = 92
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 49/76 (64%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + V+++A M IL SAP + +MF G+++A QA TQIQE TL+F K++AV +
Sbjct: 1 MFQTQVVQLAYQGMLLILILSAPPILISMFFGLMVAIFQAATQIQEQTLSFTVKLVAVTL 60
Query: 61 TLIISAPFIGGQISSF 76
TL+ ++G QI SF
Sbjct: 61 TLMFLGGWLGAQIMSF 76
>gi|312879604|ref|ZP_07739404.1| flagellar biosynthetic protein FliQ [Aminomonas paucivorans DSM
12260]
gi|310782895|gb|EFQ23293.1| flagellar biosynthetic protein FliQ [Aminomonas paucivorans DSM
12260]
Length = 89
Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 44/75 (58%)
Query: 11 RAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIG 70
AMW L +S P+L AM +G++I LQ T IQE TL F+PKI+AV + +I+ P++
Sbjct: 11 HQAMWVTLFASLPLLLVAMVVGLIIGILQTATSIQEQTLVFIPKIVAVILAMILLGPWMC 70
Query: 71 GQISSFVTLVLSRIQ 85
+ + T + +
Sbjct: 71 RLVGDYATFLFESLH 85
>gi|308273530|emb|CBX30132.1| Flagellar biosynthetic protein fliQ [uncultured Desulfobacterium
sp.]
Length = 89
Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 53/76 (69%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ V+ +A+ A+ T + S PVL A+ +G++I+ QA+TQI E+TLTFVPKI+A+F+
Sbjct: 1 MSPEFVINLAQEAIKTTILVSMPVLLIALVVGLVISIFQAVTQINEMTLTFVPKILAIFL 60
Query: 61 TLIISAPFIGGQISSF 76
LI+ ++ I++F
Sbjct: 61 GLILFGSWMLEHIATF 76
>gi|126653732|ref|ZP_01725650.1| flagellar biosynthesis protein Q [Bacillus sp. B14905]
gi|126589696|gb|EAZ83832.1| flagellar biosynthesis protein Q [Bacillus sp. B14905]
Length = 89
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 48/76 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ +A A+ IL +S P+L A+ G+ ++ QA T IQE TL FVPKIIAVF+
Sbjct: 1 MTGELVISVAERAIMIILLTSGPLLLVALITGLAVSIFQATTSIQEQTLAFVPKIIAVFV 60
Query: 61 TLIISAPFIGGQISSF 76
++ P++ Q++S+
Sbjct: 61 AIVFFGPWMLSQVTSY 76
>gi|16078699|ref|NP_389518.1| flagellar biosynthesis protein FliQ [Bacillus subtilis subsp.
subtilis str. 168]
gi|221309514|ref|ZP_03591361.1| flagellar biosynthesis protein FliQ [Bacillus subtilis subsp.
subtilis str. 168]
gi|221313838|ref|ZP_03595643.1| flagellar biosynthesis protein FliQ [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221318761|ref|ZP_03600055.1| flagellar biosynthesis protein FliQ [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221323033|ref|ZP_03604327.1| flagellar biosynthesis protein FliQ [Bacillus subtilis subsp.
subtilis str. SMY]
gi|296330851|ref|ZP_06873326.1| flagellar biosynthesis protein FliQ [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305674369|ref|YP_003866041.1| flagellar export machinery protein [Bacillus subtilis subsp.
spizizenii str. W23]
gi|321315403|ref|YP_004207690.1| flagellar biosynthesis protein FliQ [Bacillus subtilis BSn5]
gi|544316|sp|P35535|FLIQ_BACSU RecName: Full=Flagellar biosynthetic protein FliQ
gi|142932|gb|AAA22454.1| flagellar protein [Bacillus subtilis]
gi|2634008|emb|CAB13509.1| component of the flagellar export machinery [Bacillus subtilis
subsp. subtilis str. 168]
gi|296151856|gb|EFG92730.1| flagellar biosynthesis protein FliQ [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305412613|gb|ADM37732.1| component of the flagellar export machinery [Bacillus subtilis
subsp. spizizenii str. W23]
gi|320021677|gb|ADV96663.1| flagellar biosynthesis protein FliQ [Bacillus subtilis BSn5]
Length = 89
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 52/85 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ V+ +A A++ L S P+L A+ +G++++ QA TQIQE TL F+PKI+AV +
Sbjct: 1 MSSEFVISMAEKAVYVTLMISGPLLAIALLVGLIVSIFQATTQIQEQTLAFIPKIVAVLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
LI P++ I SF T + S +
Sbjct: 61 ALIFFGPWMLSTILSFTTELFSNLN 85
>gi|212639550|ref|YP_002316070.1| flagellar biosynthesis protein FliQ [Anoxybacillus flavithermus
WK1]
gi|212561030|gb|ACJ34085.1| Flagellar biosynthesis pathway, component FliQ [Anoxybacillus
flavithermus WK1]
Length = 92
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 53/84 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ V+++A ++ +L P++ A+ +G+LI+ LQA TQIQE TL FVPKI+AV +
Sbjct: 4 MSPDFVIQVAERGVYMVLVVCGPLMLLALAVGLLISILQATTQIQEQTLAFVPKIVAVLL 63
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
L+ P++ ++ S+ + S +
Sbjct: 64 GLVFFGPWMLSRMVSYAYNIFSNL 87
>gi|92114089|ref|YP_574017.1| flagellar biosynthetic protein FliQ [Chromohalobacter salexigens
DSM 3043]
gi|91797179|gb|ABE59318.1| flagellar biosynthetic protein FliQ [Chromohalobacter salexigens
DSM 3043]
Length = 89
Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 45/69 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ +A M L + P+L +A+ +G+L++ QA TQI E+TLTF+PKI+ VF
Sbjct: 1 MTPEMVMGLAYQGMKVTLMLAGPLLMTALLIGLLVSLFQAATQINEMTLTFIPKILGVFG 60
Query: 61 TLIISAPFI 69
L+++ P++
Sbjct: 61 ALVVAGPWL 69
>gi|146278637|ref|YP_001168796.1| export protein FliQ [Rhodobacter sphaeroides ATCC 17025]
gi|145556878|gb|ABP71491.1| export protein FliQ, family 3 [Rhodobacter sphaeroides ATCC
17025]
Length = 88
Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+EA + + R +W + SAP+L A+ +G+ I LQALT +QE+TLTFVPK+ A+ +
Sbjct: 1 MSEAALYDALRQGLWVAVLISAPLLTVALVVGVGIGILQALTSVQEMTLTFVPKVGAMLL 60
Query: 61 TLIISAPFIGGQ-ISSFVTLVLSRIQSS 87
+S F+ ++ FV ++ RI+
Sbjct: 61 VFWVSMSFMTTTLVAFFVEGIIPRIEGG 88
>gi|149194202|ref|ZP_01871300.1| Flagellar biosynthesis protein FliQ [Caminibacter mediatlanticus
TB-2]
gi|149136155|gb|EDM24633.1| Flagellar biosynthesis protein FliQ [Caminibacter mediatlanticus
TB-2]
Length = 88
Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 54/86 (62%)
Query: 3 EADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITL 62
+++++ +A A + L S P L +M +G+LI+ QA TQI E+TL+FVPKIIA+ I L
Sbjct: 2 QSEIISLAVATLKLALFLSLPALLVSMIVGLLISIFQATTQINEMTLSFVPKIIAIAIVL 61
Query: 63 IISAPFIGGQISSFVTLVLSRIQSSL 88
I + P++ ++ F V S I + L
Sbjct: 62 IFTLPWMMNEMIDFTKYVFSLIPTFL 87
>gi|302389677|ref|YP_003825498.1| flagellar biosynthetic protein FliQ [Thermosediminibacter oceani
DSM 16646]
gi|302200305|gb|ADL07875.1| flagellar biosynthetic protein FliQ [Thermosediminibacter oceani
DSM 16646]
Length = 89
Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 50/76 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + V+ +AR A+ ++ SAP+L M +G+LI+ QA TQIQE +LTFVPKI+ V +
Sbjct: 1 MTQETVIYLAREALSMVILVSAPMLGIGMLVGLLISIFQATTQIQEQSLTFVPKIVVVMM 60
Query: 61 TLIISAPFIGGQISSF 76
++I P++ + +F
Sbjct: 61 AILIFGPWMLNLMVNF 76
>gi|289548902|ref|YP_003473890.1| flagellar biosynthetic protein FliQ [Thermocrinis albus DSM
14484]
gi|289182519|gb|ADC89763.1| flagellar biosynthetic protein FliQ [Thermocrinis albus DSM
14484]
Length = 85
Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 49/70 (70%), Gaps = 4/70 (5%)
Query: 6 VLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIIS 65
VL + + A+ +L SAPVL +G+L++ LQA TQIQE+TL+++PKI+A +IT++
Sbjct: 2 VLTVGQRALELMLLLSAPVLLVTFLVGLLVSLLQAATQIQEMTLSYIPKILAAYITVL-- 59
Query: 66 APFIGGQISS 75
F+GG + S
Sbjct: 60 --FLGGWMMS 67
>gi|168334562|ref|ZP_02692718.1| flagellar biosynthetic protein FliQ [Epulopiscium sp. 'N.t.
morphotype B']
Length = 88
Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 53/81 (65%)
Query: 3 EADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITL 62
E ++++ R + ++ ++P+L A+ +G++++ Q +T IQE TL F+PKI+AVF +
Sbjct: 2 EGQIIDVMRETIMLLIKVASPILLVALSVGLIVSIFQTVTSIQEQTLAFIPKILAVFAAI 61
Query: 63 IISAPFIGGQISSFVTLVLSR 83
I P++ +S FVT ++S+
Sbjct: 62 IFFGPWMLTMLSQFVTDIISK 82
>gi|319944173|ref|ZP_08018449.1| flagellar biosynthesis protein FliQ [Lautropia mirabilis ATCC
51599]
gi|319742468|gb|EFV94879.1| flagellar biosynthesis protein FliQ [Lautropia mirabilis ATCC
51599]
Length = 94
Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 53/78 (67%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M VL I R A+ T++++++P+L + G+LI+ LQALTQI E TL+FVPK++ +
Sbjct: 1 MTPETVLTIGRQALETLMTTASPILLVILVTGLLISILQALTQINEATLSFVPKLVLSSL 60
Query: 61 TLIISAPFIGGQISSFVT 78
L+++ P++ ++ F++
Sbjct: 61 VLVLAGPWMLSNLTDFIS 78
>gi|149200774|ref|ZP_01877749.1| Flagellar protein FliQ [Roseovarius sp. TM1035]
gi|149145107|gb|EDM33133.1| Flagellar protein FliQ [Roseovarius sp. TM1035]
Length = 88
Score = 57.0 bits (136), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 48/80 (60%)
Query: 7 LEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISA 66
+E R A W IL ++ PVL A+ +G++I LQA T I E TL+FVPK+ V +T+ + +
Sbjct: 7 IEHLRMAYWNILLTAGPVLLVALAVGLVIGILQAATSINEATLSFVPKMAIVIVTMALMS 66
Query: 67 PFIGGQISSFVTLVLSRIQS 86
F+ ++ + T V I +
Sbjct: 67 GFMLSTMTDYFTHVFDAIAT 86
>gi|308173599|ref|YP_003920304.1| flagellar export protein [Bacillus amyloliquefaciens DSM 7]
gi|307606463|emb|CBI42834.1| component of the flagellar export machinery [Bacillus
amyloliquefaciens DSM 7]
gi|328553469|gb|AEB23961.1| flagellar biosynthesis protein FliQ [Bacillus amyloliquefaciens
TA208]
Length = 89
Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 51/85 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ V+ +A A++ L P+L A+ +G+L++ QA TQIQE TL F+PKI+AV +
Sbjct: 1 MSSEFVISMAEKAVYVTLMICGPLLAIALIVGLLVSIFQATTQIQEQTLAFIPKIVAVML 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
LI P++ I SF T + S +
Sbjct: 61 GLIFFGPWMLSTILSFTTDLFSHLN 85
>gi|229827383|ref|ZP_04453452.1| hypothetical protein GCWU000182_02771 [Abiotrophia defectiva ATCC
49176]
gi|229788321|gb|EEP24435.1| hypothetical protein GCWU000182_02771 [Abiotrophia defectiva ATCC
49176]
Length = 102
Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 54/83 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ V++I+R + IL SAP+L +++ +G++I+ +Q +T IQE TLTFVPK+I +
Sbjct: 1 MSVDRVIDISRETVMLILKLSAPMLLASLVVGLIISLIQTITSIQEQTLTFVPKLIVTML 60
Query: 61 TLIISAPFIGGQISSFVTLVLSR 83
L+++ ++ +S F T + S
Sbjct: 61 MLVLTGGWMMTSLSEFATELFSN 83
>gi|311068158|ref|YP_003973081.1| flagellar biosynthesis protein FliQ [Bacillus atrophaeus 1942]
gi|310868675|gb|ADP32150.1| flagellar biosynthesis protein FliQ [Bacillus atrophaeus 1942]
Length = 89
Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 52/85 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ V+ +A A++ L S P+L A+ +G++++ QA TQIQE TL F+PKI+AV +
Sbjct: 1 MSSEFVISMAEKAVYVTLLISGPLLAIALLVGLVVSIFQATTQIQEQTLAFIPKIVAVLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
LI P++ I SF T + S +
Sbjct: 61 GLIFFGPWMLSTILSFTTELFSNLN 85
>gi|291280090|ref|YP_003496925.1| flagellar biosynthetic protein FliQ [Deferribacter desulfuricans
SSM1]
gi|290754792|dbj|BAI81169.1| flagellar biosynthetic protein FliQ [Deferribacter desulfuricans
SSM1]
Length = 91
Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 50/76 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+EI + + +AP+L + +G+LI+ QA+TQIQE+TLTF+PKI+AV +
Sbjct: 1 MTADFVIEITTKTLELTMIIAAPMLLFGLIVGLLISIFQAVTQIQEMTLTFIPKIVAVVV 60
Query: 61 TLIISAPFIGGQISSF 76
LII P+I ++ +F
Sbjct: 61 ALIIFFPWILDKLVAF 76
>gi|331005443|ref|ZP_08328822.1| Flagellar biosynthesis protein fliQ [gamma proteobacterium
IMCC1989]
gi|330420719|gb|EGG95006.1| Flagellar biosynthesis protein fliQ [gamma proteobacterium
IMCC1989]
Length = 88
Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 49/70 (70%)
Query: 7 LEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISA 66
+E++ +WT + APVL +M +G++++ +Q +TQIQE++LTF+PK++A I L++
Sbjct: 7 IELSNELLWTAILMCAPVLGISMLVGLIVSMVQVVTQIQEMSLTFIPKMLAAAIALVVFG 66
Query: 67 PFIGGQISSF 76
P++ G + F
Sbjct: 67 PWMLGVLIEF 76
>gi|152979930|ref|YP_001353120.1| FliQ component of flagellar biosynthesis pathway
[Janthinobacterium sp. Marseille]
gi|151280007|gb|ABR88417.1| FliQ component of flagellar biosynthesis pathway
[Janthinobacterium sp. Marseille]
Length = 98
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 46/69 (66%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + R A+ L +AP+L A+ +G++++ QA TQI E TL+F+PK+I +F+
Sbjct: 10 MTPETVMTMGRHAIEVTLMVAAPMLLVALGIGLIVSIFQAATQINETTLSFIPKLIGIFV 69
Query: 61 TLIISAPFI 69
L+++ P++
Sbjct: 70 ALVVAGPWM 78
>gi|71906401|ref|YP_283988.1| flagellar biosynthesis protein FliQ [Dechloromonas aromatica RCB]
gi|71846022|gb|AAZ45518.1| Flagellar biosynthesis protein FliQ [Dechloromonas aromatica RCB]
Length = 83
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 46/63 (73%)
Query: 7 LEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISA 66
+EI R A+ L SAP+L +A+ +G++++ QA TQ+ E TL FVPK++A+F+ L+++
Sbjct: 1 MEIGRQAIEVTLLISAPMLITALVVGLIVSIFQAATQLNESTLQFVPKLVAMFVVLLLTG 60
Query: 67 PFI 69
P++
Sbjct: 61 PWM 63
>gi|52080239|ref|YP_079030.1| flagellar biosynthesis protein FliQ [Bacillus licheniformis ATCC
14580]
gi|52785616|ref|YP_091445.1| flagellar biosynthesis protein FliQ [Bacillus licheniformis ATCC
14580]
gi|319645982|ref|ZP_08000212.1| FliQ protein [Bacillus sp. BT1B_CT2]
gi|52003450|gb|AAU23392.1| flagellar protein [Bacillus licheniformis ATCC 14580]
gi|52348118|gb|AAU40752.1| FliQ [Bacillus licheniformis ATCC 14580]
gi|317391732|gb|EFV72529.1| FliQ protein [Bacillus sp. BT1B_CT2]
Length = 89
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 53/85 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN V+ +A A++ L S P+L A+ +G++++ QA TQIQE TL F+PKI+AV +
Sbjct: 1 MNSEFVISMAERAVYVTLLISGPLLALALLVGLIVSVFQATTQIQEQTLAFIPKIVAVLV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
L++ P++ I SF T + S +
Sbjct: 61 GLVVFGPWMLSTILSFATELFSNLN 85
>gi|111115099|ref|YP_709717.1| flagellar biosynthesis protein [Borrelia afzelii PKo]
gi|216264085|ref|ZP_03436079.1| flagellar biosynthetic protein FliQ [Borrelia afzelii ACA-1]
gi|110890373|gb|ABH01541.1| flagellar biosynthesis protein [Borrelia afzelii PKo]
gi|215980129|gb|EEC20951.1| flagellar biosynthetic protein FliQ [Borrelia afzelii ACA-1]
Length = 87
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 48/66 (72%)
Query: 21 SAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLV 80
SAP+L A+ +G+LI+ QA+T IQ+ TL+F+PKII + +T++I P+I ++ F ++
Sbjct: 21 SAPMLIIALIVGLLISIFQAITSIQDQTLSFIPKIIVILLTVVIFGPWILNKLMQFTYMI 80
Query: 81 LSRIQS 86
+++Q+
Sbjct: 81 FNQLQN 86
>gi|119714989|ref|YP_921954.1| export protein FliQ [Nocardioides sp. JS614]
gi|119535650|gb|ABL80267.1| export protein FliQ, family 3 [Nocardioides sp. JS614]
Length = 89
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 49/76 (64%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M++ ++EIA + L SAP+L +++ +G I+ Q+LTQIQE TL FVPK+I V I
Sbjct: 1 MSDTAIIEIALRTLVVALKLSAPILVTSLVIGFAISLFQSLTQIQEATLAFVPKLIGVGI 60
Query: 61 TLIISAPFIGGQISSF 76
L++S ++ + SF
Sbjct: 61 ALLLSGNWMMHTLVSF 76
>gi|313673291|ref|YP_004051402.1| flagellar biosynthetic protein fliq [Calditerrivibrio
nitroreducens DSM 19672]
gi|312940047|gb|ADR19239.1| flagellar biosynthetic protein FliQ [Calditerrivibrio
nitroreducens DSM 19672]
Length = 90
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 53/86 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN VL + A+ L +AP+L + G++++ QA+TQIQE+TL+F+PKI+AV I
Sbjct: 1 MNPDLVLSLTTKALEVALMLAAPMLLFGLIAGLVVSIFQAVTQIQEMTLSFIPKILAVVI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
L+I P++ + SF + + I S
Sbjct: 61 ALVIFFPWMMDTMISFTINLFTNINS 86
>gi|20807872|ref|NP_623043.1| flagellar biosynthesis protein FliQ [Thermoanaerobacter
tengcongensis MB4]
gi|20516436|gb|AAM24647.1| Flagellar biosynthesis/type III secretory pathway protein
[Thermoanaerobacter tengcongensis MB4]
Length = 89
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 49/69 (71%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ + +++ R A+ L+ + P+L A+ +G+LI+ QA TQIQE TL+FVPKI+AV +
Sbjct: 1 MSSSMAVDLGREALSVALTVATPMLAVALGVGLLISIFQATTQIQEQTLSFVPKIVAVLL 60
Query: 61 TLIISAPFI 69
+LI+ P++
Sbjct: 61 SLILFGPWM 69
>gi|91776319|ref|YP_546075.1| flagellar biosynthetic protein FliQ [Methylobacillus flagellatus
KT]
gi|91710306|gb|ABE50234.1| flagellar biosynthetic protein FliQ [Methylobacillus flagellatus
KT]
Length = 89
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 51/84 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ V+ + R A +L + P+L + +G+L++ QA TQI E TLTF+PK++ VF
Sbjct: 1 MSPEHVMTMGRQAAEILLMVAGPMLLVVLAIGLLVSIFQAATQINEATLTFIPKLLGVFA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
TL+I+ P++ + ++ V + I
Sbjct: 61 TLLIAGPWMLSVFTDYLRAVFTSI 84
>gi|288958050|ref|YP_003448391.1| flagellar biosynthetic protein [Azospirillum sp. B510]
gi|288910358|dbj|BAI71847.1| flagellar biosynthetic protein [Azospirillum sp. B510]
Length = 119
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 48/76 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNE +V+EI R ++ T++ P+L M +G +I+ QA+TQI E TL VPK++ VF
Sbjct: 1 MNETEVIEICRTSIVTLVIVCGPILVIMMAVGTVISIFQAVTQISEQTLAMVPKVLLVFG 60
Query: 61 TLIISAPFIGGQISSF 76
I+ PF+ +++ F
Sbjct: 61 LSILLMPFMLSKLTEF 76
>gi|325109028|ref|YP_004270096.1| flagellar biosynthetic protein FliQ [Planctomyces brasiliensis
DSM 5305]
gi|324969296|gb|ADY60074.1| flagellar biosynthetic protein FliQ [Planctomyces brasiliensis
DSM 5305]
Length = 88
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 47/69 (68%)
Query: 8 EIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAP 67
EI R A+ + APV+ AM +G++I+ QA+TQ+Q+ TL+FVPKI+ + T+++ P
Sbjct: 8 EITRQAILLAVIVGAPVMLVAMLVGLVISLFQAVTQLQDQTLSFVPKILLMVGTVVVLLP 67
Query: 68 FIGGQISSF 76
++ GQI +
Sbjct: 68 WLIGQIVDY 76
>gi|114566401|ref|YP_753555.1| hypothetical protein Swol_0866 [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
gi|114337336|gb|ABI68184.1| conserved hypothetical protein [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
Length = 90
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 54/76 (71%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M E +L IA A+ +L SAPVL +A+ G+LI+ LQA TQ+QE+TLTFVPKII VF+
Sbjct: 1 MYENIILGIANEALIVVLLLSAPVLGAALITGLLISILQATTQLQEMTLTFVPKIIVVFL 60
Query: 61 TLIISAPFIGGQISSF 76
+II P++ I++F
Sbjct: 61 VIIIFGPWMLNVITAF 76
>gi|310816829|ref|YP_003964793.1| flagellar biosynthetic protein FliQ [Ketogulonicigenium vulgare
Y25]
gi|308755564|gb|ADO43493.1| flagellar biosynthetic protein FliQ [Ketogulonicigenium vulgare
Y25]
Length = 89
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 49/81 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
++EA + + RA +W S P+L A+ G+++ QALT +QE+TLTFVPK+ A+ +
Sbjct: 2 LSEAQIYDTLRAGLWAAFLMSTPILVVALVAGLIVGLFQALTSVQEMTLTFVPKLAAIVV 61
Query: 61 TLIISAPFIGGQISSFVTLVL 81
++ F+ ++++ VL
Sbjct: 62 VFWLTMGFMTRTLTAYFHGVL 82
>gi|134095088|ref|YP_001100163.1| flagellar biosynthetic protein fliQ [Herminiimonas
arsenicoxydans]
gi|133738991|emb|CAL62039.1| Flagellar biosynthetic protein FliQ [Herminiimonas
arsenicoxydans]
Length = 89
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 46/69 (66%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + R A+ L +AP+L A+ +G++++ QA TQI E TL+F+PK++ +F+
Sbjct: 1 MTPETVMTMGRHAIEITLMVAAPMLLVALGIGLIVSIFQAATQINETTLSFIPKLVGIFL 60
Query: 61 TLIISAPFI 69
LII+ P++
Sbjct: 61 ALIIAGPWM 69
>gi|269792927|ref|YP_003317831.1| export protein FliQ family 3 [Thermanaerovibrio acidaminovorans
DSM 6589]
gi|269100562|gb|ACZ19549.1| export protein FliQ family 3 [Thermanaerovibrio acidaminovorans
DSM 6589]
Length = 89
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 43/70 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V + R A+W + SS P+L AM +G++I LQ T IQE TL F+PKI+A+
Sbjct: 1 MESLSVADAFRQALWISMISSMPILVIAMVVGLVIGILQTATSIQEQTLLFIPKILAIIG 60
Query: 61 TLIISAPFIG 70
L+I P++G
Sbjct: 61 GLLILGPWMG 70
>gi|89895723|ref|YP_519210.1| hypothetical protein DSY2977 [Desulfitobacterium hafniense Y51]
gi|89335171|dbj|BAE84766.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 90
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 55/78 (70%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN++DVL +A+ A+ T L PVL ++ +G+L++ QA+TQIQE TLTF+PKI+A+ +
Sbjct: 1 MNQSDVLYLAKEALMTALMIGGPVLGVSLLVGLLVSIFQAMTQIQEQTLTFIPKILAIAL 60
Query: 61 TLIISAPFIGGQISSFVT 78
+++ P++ I+ F T
Sbjct: 61 VMLLLGPWMLNVITGFTT 78
>gi|68164509|gb|AAY87238.1| predicted flagellar biosynthesis protein [uncultured bacterium
BAC17H8]
Length = 88
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 51/84 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ +E R A W I+ ++ P+L A+ +G+LI +QA T I E+TL+FVPK++ V +
Sbjct: 1 MDFDSNVEFLRIAFWQIIMAAGPLLAVALAVGLLIGIIQAATSINEMTLSFVPKLVVVIL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
T + + F+ Q+S + + +I
Sbjct: 61 TFGLMSSFMLAQLSEYFQFIFDQI 84
>gi|116328497|ref|YP_798217.1| endoflagellar biosynthesis pathway protein [Leptospira
borgpetersenii serovar Hardjo-bovis L550]
gi|116331227|ref|YP_800945.1| endoflagellar biosynthesis pathway protein [Leptospira
borgpetersenii serovar Hardjo-bovis JB197]
gi|116121241|gb|ABJ79284.1| Endoflagellar biosynthesis pathway protein [Leptospira
borgpetersenii serovar Hardjo-bovis L550]
gi|116124916|gb|ABJ76187.1| Endoflagellar biosynthesis pathway protein [Leptospira
borgpetersenii serovar Hardjo-bovis JB197]
Length = 87
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 43/64 (67%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M E D + + R +++ L S+P+L +A+ +G++I LQ T IQE T+ FVPK+ AVF+
Sbjct: 1 MTELDAMTLIRDSLYITLKISSPILLTALVVGLIIGILQTTTSIQEPTIAFVPKLAAVFV 60
Query: 61 TLII 64
++I
Sbjct: 61 VIVI 64
>gi|322836571|ref|YP_004210067.1| type III secretion apparatus protein YscS [Yersinia pestis Java
9]
gi|321161345|gb|ADW67051.1| type III secretion apparatus protein YscS [Yersinia pestis Java
9]
Length = 67
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Query: 23 PVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLS 82
PVL +A+ +G L++ +QALTQIQE TL FV K+IAV +TL +A ++G ++ SF + +
Sbjct: 3 PVLVAAV-VGTLVSLVQALTQIQEQTLGFVIKLIAVVVTLFATASWLGNELHSFAEMTMM 61
Query: 83 RIQS 86
+IQ
Sbjct: 62 KIQG 65
>gi|258404718|ref|YP_003197460.1| flagellar biosynthetic protein FliQ [Desulfohalobium retbaense
DSM 5692]
gi|257796945|gb|ACV67882.1| flagellar biosynthetic protein FliQ [Desulfohalobium retbaense
DSM 5692]
Length = 91
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 46/64 (71%)
Query: 6 VLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIIS 65
V+ + R ++ TIL ++P++ SA+ +G+LI+ QA TQIQE TL+F PK+ AV + L I
Sbjct: 6 VVALTRQSVETILLVTSPMMISAVVVGLLISIFQAATQIQEQTLSFAPKVAAVMVALTIF 65
Query: 66 APFI 69
AP+I
Sbjct: 66 APWI 69
>gi|126730136|ref|ZP_01745948.1| flagellar biosynthetic protein FliQ [Sagittula stellata E-37]
gi|126709516|gb|EBA08570.1| flagellar biosynthetic protein FliQ [Sagittula stellata E-37]
Length = 89
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
+NE + R +W +S P+L +A+ G+ I LQALT IQE+TLTFVPK++A+
Sbjct: 2 LNETVFFDTLRMGLWVAAVTSVPILAAALIAGVGIGLLQALTSIQEMTLTFVPKLLAIVA 61
Query: 61 TLIISAPFIGGQISSF 76
+S F+ + F
Sbjct: 62 VFWMSMSFMTNTLVGF 77
>gi|261407967|ref|YP_003244208.1| flagellar biosynthetic protein FliQ [Paenibacillus sp. Y412MC10]
gi|329929295|ref|ZP_08283048.1| flagellar biosynthetic protein FliQ [Paenibacillus sp. HGF5]
gi|261284430|gb|ACX66401.1| flagellar biosynthetic protein FliQ [Paenibacillus sp. Y412MC10]
gi|328936664|gb|EGG33107.1| flagellar biosynthetic protein FliQ [Paenibacillus sp. HGF5]
Length = 89
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 47/69 (68%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ ++ +A A++ +L SAP+L A+ +G++I+ QA TQIQE TL FVPKII V +
Sbjct: 1 MSAEFIIGLAGQAVYIVLQVSAPMLVLALVVGLIISIFQATTQIQEQTLAFVPKIIIVLV 60
Query: 61 TLIISAPFI 69
L++ P+I
Sbjct: 61 ALLLFGPWI 69
>gi|297569686|ref|YP_003691030.1| flagellar biosynthetic protein FliQ [Desulfurivibrio alkaliphilus
AHT2]
gi|296925601|gb|ADH86411.1| flagellar biosynthetic protein FliQ [Desulfurivibrio alkaliphilus
AHT2]
Length = 89
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 44/63 (69%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ ADV + + A+ L+ + P+L M +G+ IA QA+TQIQE+TLTFVPKI AV +
Sbjct: 1 MSPADVAVLIQQAVKVTLTLAGPILGMGMAVGLTIALFQAVTQIQEMTLTFVPKIFAVLL 60
Query: 61 TLI 63
T++
Sbjct: 61 TVL 63
>gi|260431750|ref|ZP_05785721.1| flagellar biosynthetic protein FliQ [Silicibacter
lacuscaerulensis ITI-1157]
gi|260415578|gb|EEX08837.1| flagellar biosynthetic protein FliQ [Silicibacter
lacuscaerulensis ITI-1157]
Length = 90
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 45/76 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
+ E +I R A+W + +S P+L A+ G+ + QALT IQE+TLTFVPK++ + I
Sbjct: 2 LGEGLYFDIVRQALWVAVITSVPILAVALVTGLAVGLFQALTSIQEMTLTFVPKLVCIVI 61
Query: 61 TLIISAPFIGGQISSF 76
+S F+ + +F
Sbjct: 62 AFWMSMGFMTQALVTF 77
>gi|125973003|ref|YP_001036913.1| flagellar biosynthetic protein FliQ [Clostridium thermocellum
ATCC 27405]
gi|256004800|ref|ZP_05429775.1| flagellar biosynthetic protein FliQ [Clostridium thermocellum DSM
2360]
gi|281417214|ref|ZP_06248234.1| flagellar biosynthetic protein FliQ [Clostridium thermocellum
JW20]
gi|125713228|gb|ABN51720.1| flagellar biosynthetic protein FliQ [Clostridium thermocellum
ATCC 27405]
gi|255991250|gb|EEU01357.1| flagellar biosynthetic protein FliQ [Clostridium thermocellum DSM
2360]
gi|281408616|gb|EFB38874.1| flagellar biosynthetic protein FliQ [Clostridium thermocellum
JW20]
gi|316940761|gb|ADU74795.1| flagellar biosynthetic protein FliQ [Clostridium thermocellum DSM
1313]
Length = 89
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 48/69 (69%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + V+E+A+ A+ T+L +AP+L ++ +G+ ++ QA TQIQE TLTF+PKI++V
Sbjct: 1 MEQGLVMELAQKAIMTVLYVAAPMLGLSLLVGLAVSIFQATTQIQEQTLTFIPKILSVLG 60
Query: 61 TLIISAPFI 69
+ I P++
Sbjct: 61 AIAIFGPWM 69
>gi|315648122|ref|ZP_07901223.1| flagellar biosynthetic protein FliQ [Paenibacillus vortex V453]
gi|315276768|gb|EFU40111.1| flagellar biosynthetic protein FliQ [Paenibacillus vortex V453]
Length = 89
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 48/69 (69%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ ++ +A A++ +L SAP++ A+ +G++I+ QA TQIQE TL FVPKI+ V +
Sbjct: 1 MSSEFIIGLAGQAVYIVLQVSAPMMVLALVVGLIISIFQATTQIQEQTLAFVPKIVIVLV 60
Query: 61 TLIISAPFI 69
+L++ P+I
Sbjct: 61 SLLLFGPWI 69
>gi|251789177|ref|YP_003003898.1| flagellar biosynthesis protein FliQ [Dickeya zeae Ech1591]
gi|247537798|gb|ACT06419.1| flagellar biosynthetic protein FliQ [Dickeya zeae Ech1591]
Length = 89
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 45/69 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + AM L + P L +A+ G++I+ LQA TQI E+TL+F+PK++ VF
Sbjct: 1 MTPESVMALGYEAMKIALMLAGPPLIAALVSGLIISLLQAATQINEMTLSFIPKVLTVFF 60
Query: 61 TLIISAPFI 69
TL+++ P++
Sbjct: 61 TLVVAGPWM 69
>gi|255523690|ref|ZP_05390656.1| flagellar biosynthetic protein FliQ [Clostridium carboxidivorans
P7]
gi|296186694|ref|ZP_06855096.1| flagellar biosynthetic protein FliQ [Clostridium carboxidivorans
P7]
gi|255512559|gb|EET88833.1| flagellar biosynthetic protein FliQ [Clostridium carboxidivorans
P7]
gi|296048731|gb|EFG88163.1| flagellar biosynthetic protein FliQ [Clostridium carboxidivorans
P7]
Length = 89
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 55/84 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E V+ I + A+ T L SAP+L ++ +G++I+ QA TQIQE TLTFVPK+IA+ +
Sbjct: 1 MSENMVIGIIKDAIQTGLIVSAPILIISILVGLIISIFQATTQIQEQTLTFVPKLIAIAV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
+++ ++ Q+ +F + + I
Sbjct: 61 VGLLTGSWMLHQLVNFTERIFTYI 84
>gi|224534382|ref|ZP_03674960.1| flagellar biosynthetic protein FliQ [Borrelia spielmanii A14S]
gi|224514484|gb|EEF84800.1| flagellar biosynthetic protein FliQ [Borrelia spielmanii A14S]
Length = 87
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 48/66 (72%)
Query: 21 SAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLV 80
S+P+L A+ +G+LI+ QA+T IQ+ TL+F+PKII + +T++I P+I ++ F ++
Sbjct: 21 SSPMLIIALIVGLLISIFQAITSIQDQTLSFIPKIIVILLTVVIFGPWILNKLMQFTYMI 80
Query: 81 LSRIQS 86
+++Q+
Sbjct: 81 FNQLQN 86
>gi|299534770|ref|ZP_07048100.1| flagellar biosynthetic protein [Lysinibacillus fusiformis ZC1]
gi|298729858|gb|EFI70403.1| flagellar biosynthetic protein [Lysinibacillus fusiformis ZC1]
Length = 89
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 47/76 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ IA A+ IL +S P+L A+ G+ ++ QA T IQE TL FVPKIIAV +
Sbjct: 1 MTGELVISIAERAIMIILLTSGPLLLVALISGLAVSIFQATTSIQEQTLAFVPKIIAVLV 60
Query: 61 TLIISAPFIGGQISSF 76
++ P++ Q++S+
Sbjct: 61 AIVFFGPWMLSQVTSY 76
>gi|163789634|ref|ZP_02184072.1| flagellar biosynthesis protein [Carnobacterium sp. AT7]
gi|159875166|gb|EDP69232.1| flagellar biosynthesis protein [Carnobacterium sp. AT7]
Length = 87
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 49/76 (64%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M VL+I R A +++ + P L A+ +G++I+ QA TQ+QE TL+FVPKI+AV +
Sbjct: 1 MTIVQVLDIIREAFMVMIAVAGPTLVIALVVGLIISIFQATTQLQEQTLSFVPKILAVIV 60
Query: 61 TLIISAPFIGGQISSF 76
+LI+ F+ + +F
Sbjct: 61 SLIVFGNFMLNGLITF 76
>gi|6708105|gb|AAF25802.1|AF172245_4 BscS [Bordetella bronchiseptica]
Length = 88
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 50/82 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M D++ A++ +L S P + A +G L + LQALTQ+QE TL+F K+IAVF
Sbjct: 1 MQTQDLVSFMTQALYLVLWLSLPPIAVAAIVGTLFSLLQALTQVQEQTLSFAVKLIAVFA 60
Query: 61 TLIISAPFIGGQISSFVTLVLS 82
TL+++A +I +I +F VL
Sbjct: 61 TLMLAARWISAEIYNFTIAVLD 82
>gi|291484189|dbj|BAI85264.1| flagellar biosynthesis protein FliQ [Bacillus subtilis subsp.
natto BEST195]
Length = 81
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 48/77 (62%)
Query: 9 IARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPF 68
+A A++ L S P+L A+ +G++++ QA TQIQE TL F+PKI+AV + LI P+
Sbjct: 1 MAEKAVYVTLMISGPLLAIALLVGLIVSIFQATTQIQEQTLAFIPKIVAVLLALIFFGPW 60
Query: 69 IGGQISSFVTLVLSRIQ 85
+ I SF T + S +
Sbjct: 61 MLSTILSFTTELFSNLN 77
>gi|329889295|ref|ZP_08267638.1| putative translocation protein y4yM [Brevundimonas diminuta ATCC
11568]
gi|328844596|gb|EGF94160.1| putative translocation protein y4yM [Brevundimonas diminuta ATCC
11568]
Length = 90
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 46/76 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M A +E+ A+W +L SAP + +A +G+++A +Q+ TQ+QE TL + K A+ +
Sbjct: 1 MMNAQAIELVNQALWLVLFLSAPPIIAASIVGLIVAVIQSATQLQEQTLQYTAKFFAIVL 60
Query: 61 TLIISAPFIGGQISSF 76
TL +A IGG + F
Sbjct: 61 TLFATAALIGGSLYQF 76
>gi|307131600|ref|YP_003883616.1| flagellar biosynthesis protein fliQ [Dickeya dadantii 3937]
gi|306529129|gb|ADM99059.1| Flagellar biosynthesis protein fliQ [Dickeya dadantii 3937]
Length = 89
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 45/69 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + AM L + P L +A+ G++I+ LQA TQI E+TL+F+PK++ VF
Sbjct: 1 MTPESVMALGYEAMKIALMLAGPPLVAALVSGLIISLLQAATQINEMTLSFIPKVLTVFF 60
Query: 61 TLIISAPFI 69
TL+++ P++
Sbjct: 61 TLVVAGPWM 69
>gi|254466972|ref|ZP_05080383.1| export protein FliQ, family 3 [Rhodobacterales bacterium Y4I]
gi|206687880|gb|EDZ48362.1| export protein FliQ, family 3 [Rhodobacterales bacterium Y4I]
Length = 90
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 47/76 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E+ + R A+W ++ S P+L A+ +G+ I QALT +QE+TLTFVPK+ A+ +
Sbjct: 2 MSESLFYDTLRQALWAAVTMSTPILVVALVVGLTIGLFQALTSVQEMTLTFVPKLTAILV 61
Query: 61 TLIISAPFIGGQISSF 76
++ F+ + +F
Sbjct: 62 VFWMTMGFMTQTLVAF 77
>gi|126738580|ref|ZP_01754285.1| flagellar biosynthetic protein FliQ [Roseobacter sp. SK209-2-6]
gi|126720379|gb|EBA17085.1| flagellar biosynthetic protein FliQ [Roseobacter sp. SK209-2-6]
Length = 90
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 43/69 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M E + R A+WT ++ S P+L A+ +G+ + QALT +QE++LTFVPK+ A+ +
Sbjct: 2 MTEGQFYDTLRQALWTAVTMSTPILTVALVVGLAVGLFQALTSVQEMSLTFVPKLAAIVV 61
Query: 61 TLIISAPFI 69
++ F+
Sbjct: 62 VFWMTMGFM 70
>gi|303240271|ref|ZP_07326790.1| flagellar biosynthetic protein FliQ [Acetivibrio cellulolyticus
CD2]
gi|302592181|gb|EFL61910.1| flagellar biosynthetic protein FliQ [Acetivibrio cellulolyticus
CD2]
Length = 89
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 44/59 (74%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVF 59
M++ V+E+A+ ++ T++ SAP+L ++ +G+ I+ QA TQIQE TLTF+PKI+AV
Sbjct: 1 MDQGMVIELAQKSIMTVIYVSAPMLGLSLIVGLAISIFQATTQIQEQTLTFIPKILAVL 59
>gi|171319606|ref|ZP_02908702.1| export protein FliQ family 3 [Burkholderia ambifaria MEX-5]
gi|171095177|gb|EDT40179.1| export protein FliQ family 3 [Burkholderia ambifaria MEX-5]
Length = 88
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 53/84 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E+ L++ +W + PVL + + G+L++ Q +TQ+QE++L++VPK++ I
Sbjct: 1 MSESQALQMLSQLIWNSFLIAGPVLAATLIAGLLVSIFQVVTQLQEMSLSYVPKLVVAGI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
L+ AP++ G+++ F T + + I
Sbjct: 61 VLVTLAPWMLGRLTGFTTTLFAGI 84
>gi|326791525|ref|YP_004309346.1| flagellar biosynthetic protein FliQ [Clostridium lentocellum DSM
5427]
gi|326542289|gb|ADZ84148.1| flagellar biosynthetic protein FliQ [Clostridium lentocellum DSM
5427]
Length = 87
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 46/74 (62%)
Query: 3 EADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITL 62
E VL+ R A+ I+ S P+L + + +G++I+ Q T IQE TL F+PKIIAVF+ +
Sbjct: 2 EQIVLDYMREALMMIVKVSLPILLTGLVVGLIISIFQTATSIQEQTLAFIPKIIAVFLAI 61
Query: 63 IISAPFIGGQISSF 76
II +I +S +
Sbjct: 62 IIFGSWIINMLSVY 75
>gi|238787478|ref|ZP_04631276.1| Secretion system apparatus protein ssaS [Yersinia frederiksenii
ATCC 33641]
gi|238724265|gb|EEQ15907.1| Secretion system apparatus protein ssaS [Yersinia frederiksenii
ATCC 33641]
Length = 89
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 51/76 (67%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ A V+ +A +W +L S PV+ A +G++++ LQALTQIQ+ TL F+ K++AV
Sbjct: 1 MSNAIVVHLATQLLWIVLLLSMPVVLVASVVGLVVSLLQALTQIQDQTLQFLIKLLAVSA 60
Query: 61 TLIISAPFIGGQISSF 76
TL+++ ++G + ++
Sbjct: 61 TLLVTYHWMGSTLLNY 76
>gi|78224288|ref|YP_386035.1| flagellar biosynthesis protein FliQ [Geobacter metallireducens
GS-15]
gi|78195543|gb|ABB33310.1| Flagellar biosynthesis protein FliQ [Geobacter metallireducens
GS-15]
Length = 89
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 48/76 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ V+++AR + L SAP+L S + +G+LI+ QA+T IQE TL F PKII V +
Sbjct: 1 MSPDLVVQLARRSFEVTLLLSAPLLISGLVVGLLISIFQAVTSIQEATLAFAPKIIIVMV 60
Query: 61 TLIISAPFIGGQISSF 76
++I P++ +S F
Sbjct: 61 AMVIFFPWMMSYMSDF 76
>gi|121608108|ref|YP_995915.1| flagellar biosynthetic protein FliQ [Verminephrobacter eiseniae
EF01-2]
gi|121552748|gb|ABM56897.1| flagellar biosynthetic protein FliQ [Verminephrobacter eiseniae
EF01-2]
Length = 89
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 50/86 (58%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M VL I R A+ +L S PVL + + +G++++ QA+TQI E TL FVPK+IA
Sbjct: 1 MTAQMVLTIGRDALSLLLMISMPVLAAVLAVGLIVSIFQAVTQIHEATLAFVPKLIAAMA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
L ++ P++ G + F+ + I S
Sbjct: 61 VLALAGPWMLGLLVDFIRRTIESIPS 86
>gi|306820132|ref|ZP_07453780.1| flagellar biosynthetic protein FliQ [Eubacterium yurii subsp.
margaretiae ATCC 43715]
gi|304551910|gb|EFM39853.1| flagellar biosynthetic protein FliQ [Eubacterium yurii subsp.
margaretiae ATCC 43715]
Length = 89
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 47/71 (66%)
Query: 6 VLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIIS 65
V+ I + A IL SAP+L + +G++++ QA TQIQE TL FVPKI+AV ++++I
Sbjct: 6 VVNIIQQAALMILLLSAPMLLIGLVVGLIVSIFQATTQIQEATLAFVPKIVAVLLSMVIF 65
Query: 66 APFIGGQISSF 76
P+I + +F
Sbjct: 66 GPWIISTLVNF 76
>gi|146277691|ref|YP_001167850.1| flagellar biosynthetic protein FliQ [Rhodobacter sphaeroides ATCC
17025]
gi|145555932|gb|ABP70545.1| flagellar biosynthetic protein FliQ [Rhodobacter sphaeroides ATCC
17025]
Length = 88
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 49/80 (61%)
Query: 7 LEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISA 66
+E R A W IL ++ PVL A+ +G++I LQA T I E TL+FVPK+ V +T+ +++
Sbjct: 7 IEHLRIAYWNILLTAGPVLGVALAVGLVIGILQAATSINEATLSFVPKLAIVLLTMALAS 66
Query: 67 PFIGGQISSFVTLVLSRIQS 86
F+ +++ + V I +
Sbjct: 67 SFMLTRMTDYFAFVFETIAT 86
>gi|169827137|ref|YP_001697295.1| flagellar biosynthetic protein [Lysinibacillus sphaericus C3-41]
gi|168991625|gb|ACA39165.1| Flagellar biosynthetic protein [Lysinibacillus sphaericus C3-41]
Length = 89
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 47/76 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ +A A+ IL +S P+L A+ G+ ++ QA T IQE TL FVPKI+AV +
Sbjct: 1 MTGELVISVAERAIMIILLTSGPLLLVALITGLAVSIFQATTSIQEQTLAFVPKIVAVLV 60
Query: 61 TLIISAPFIGGQISSF 76
++ P++ Q++S+
Sbjct: 61 AIVFFGPWMLSQVTSY 76
>gi|94264045|ref|ZP_01287845.1| Flagellar biosynthesis protein FliQ [delta proteobacterium
MLMS-1]
gi|94266369|ref|ZP_01290068.1| Flagellar biosynthesis protein FliQ [delta proteobacterium
MLMS-1]
gi|93453021|gb|EAT03509.1| Flagellar biosynthesis protein FliQ [delta proteobacterium
MLMS-1]
gi|93455556|gb|EAT05743.1| Flagellar biosynthesis protein FliQ [delta proteobacterium
MLMS-1]
Length = 89
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 42/60 (70%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ ADV+ + + A+ L + P+L AM +G+ IA QA+TQIQE+TLTFVPKI AV +
Sbjct: 1 MDPADVVVLIQQAVRVTLLMAGPILGIAMGVGLTIALFQAITQIQEMTLTFVPKIFAVLL 60
>gi|260429257|ref|ZP_05783234.1| flagellar biosynthetic protein FliQ [Citreicella sp. SE45]
gi|260419880|gb|EEX13133.1| flagellar biosynthetic protein FliQ [Citreicella sp. SE45]
Length = 89
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 43/69 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
+ EA + R +W +SAP+L +A+ G+ + QALT IQE+TLTFVPK++A+ +
Sbjct: 2 LTEAIFYDTLRQGLWIATVTSAPILTAALVAGVGVGLFQALTSIQEMTLTFVPKLMAIVV 61
Query: 61 TLIISAPFI 69
+S F+
Sbjct: 62 VFWMSMSFM 70
>gi|300854221|ref|YP_003779205.1| flagellar biosynthesis protein FliQ [Clostridium ljungdahlii DSM
13528]
gi|300434336|gb|ADK14103.1| flagellar biosynthesis protein FliQ [Clostridium ljungdahlii DSM
13528]
Length = 89
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 54/84 (64%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E V+ I + A+ T L AP+L ++ +G++I+ QA TQIQE TLTFVPK+IAV +
Sbjct: 1 MSENMVIGIIKDAVQTGLIVGAPILIVSVVVGLIISIFQATTQIQEQTLTFVPKLIAVAV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
+I+ ++ Q+ +F + + I
Sbjct: 61 IGLITGSWMLQQVVAFTERIFTYI 84
>gi|271500075|ref|YP_003333100.1| flagellar biosynthetic protein FliQ [Dickeya dadantii Ech586]
gi|270343630|gb|ACZ76395.1| flagellar biosynthetic protein FliQ [Dickeya dadantii Ech586]
Length = 89
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 45/69 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + AM L + P L +A+ G++++ LQA TQI E+TL+F+PK++ VF
Sbjct: 1 MTPESVMALGYEAMKIALMLAGPPLIAALVSGLIVSMLQAATQINEMTLSFIPKVLTVFF 60
Query: 61 TLIISAPFI 69
TL+++ P++
Sbjct: 61 TLVVAGPWM 69
>gi|39995532|ref|NP_951483.1| flagellar biosynthetic protein FliQ [Geobacter sulfurreducens
PCA]
gi|39982295|gb|AAR33756.1| flagellar biosynthetic protein FliQ [Geobacter sulfurreducens
PCA]
gi|298504533|gb|ADI83256.1| flagellar biogenesis protein FliQ [Geobacter sulfurreducens
KN400]
Length = 89
Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 46/71 (64%)
Query: 6 VLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIIS 65
V+++AR + L +AP+L S + +G+ ++ QA+T IQE TL F PKIIAV + L+I
Sbjct: 6 VVQLARRSFEVTLMLAAPLLISGLVVGLAVSIFQAVTSIQEATLAFAPKIIAVMVALVIF 65
Query: 66 APFIGGQISSF 76
P++ +S F
Sbjct: 66 FPWMMNYMSDF 76
>gi|317486798|ref|ZP_07945614.1| HrpO family type III secretion protein [Bilophila wadsworthia
3_1_6]
gi|316921961|gb|EFV43231.1| HrpO family type III secretion protein [Bilophila wadsworthia
3_1_6]
Length = 87
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 51/81 (62%)
Query: 3 EADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITL 62
E+ ++ A A++ +L S P + A +GIL++ +QA+TQ+QE TLTF K++AV +TL
Sbjct: 2 ESAAIDYAMKALYLVLMLSMPPIIVASLIGILLSLIQAITQLQEQTLTFGVKLLAVVLTL 61
Query: 63 IISAPFIGGQISSFVTLVLSR 83
I ++ G+I + + SR
Sbjct: 62 FIMGGWLSGEILRYADDIFSR 82
>gi|16764770|ref|NP_460385.1| type III secretion system apparatus protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. LT2]
gi|56413609|ref|YP_150684.1| type III secretion protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|62180011|ref|YP_216428.1| secretion system apparatus SsaS [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|161614163|ref|YP_001588128.1| hypothetical protein SPAB_01905 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|197362533|ref|YP_002142170.1| type III secretion protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|207857074|ref|YP_002243725.1| type III secretion protein [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|224584069|ref|YP_002637867.1| type III secretion protein [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|238913177|ref|ZP_04657014.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
gi|3024663|sp|P74891|SSAS_SALTY RecName: Full=Secretion system apparatus protein SsaS
gi|1526986|emb|CAA68200.1| secretion system apparatus, SsaS [Salmonella enterica subsp.
enterica serovar Typhimurium]
gi|16419941|gb|AAL20344.1| secretion system apparatus [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|56127866|gb|AAV77372.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|62127644|gb|AAX65347.1| Secretion system apparatus SsaS [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|161363527|gb|ABX67295.1| hypothetical protein SPAB_01905 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|197094010|emb|CAR59506.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|206708877|emb|CAR33207.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|224468596|gb|ACN46426.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|261246626|emb|CBG24436.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. D23580]
gi|267993309|gb|ACY88194.1| type III secretion system apparatus protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. 14028S]
gi|301157955|emb|CBW17450.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|312912405|dbj|BAJ36379.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|322615096|gb|EFY12019.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|322619937|gb|EFY16810.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|322622249|gb|EFY19094.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|322627771|gb|EFY24561.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|322632884|gb|EFY29628.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|322636625|gb|EFY33328.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|322641182|gb|EFY37824.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322644883|gb|EFY41416.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|322650281|gb|EFY46695.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|322655854|gb|EFY52156.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|322660180|gb|EFY56419.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|322665254|gb|EFY61442.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|322669511|gb|EFY65659.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|322673437|gb|EFY69539.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|322677365|gb|EFY73429.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|322679972|gb|EFY76011.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|322687444|gb|EFY83416.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|322714478|gb|EFZ06049.1| type III secretion system apparatus protein [Salmonella enterica
subsp. enterica serovar Choleraesuis str. A50]
gi|323129692|gb|ADX17122.1| type III secretion system apparatus protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. 4/74]
gi|323194103|gb|EFZ79302.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|323198584|gb|EFZ83685.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|323202910|gb|EFZ87945.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|323208630|gb|EFZ93568.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|323211166|gb|EFZ96013.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|323217607|gb|EGA02322.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|323218956|gb|EGA03466.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|323223786|gb|EGA08090.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|323229409|gb|EGA13532.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|323232632|gb|EGA16728.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|323240330|gb|EGA24374.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|323242681|gb|EGA26702.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|323245892|gb|EGA29880.1| type III secretion system protein SsaS [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2009159199]
gi|323252456|gb|EGA36303.1| type III secretion system protein SsaS [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008282]
gi|323256475|gb|EGA40208.1| type III secretion system protein SsaS [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008283]
gi|323260038|gb|EGA43663.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|323267199|gb|EGA50684.1| type III secretion system protein SsaS [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008285]
gi|323271478|gb|EGA54899.1| type III secretion system protein SsaS [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008287]
gi|332988307|gb|AEF07290.1| type III secretion system apparatus protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. UK-1]
Length = 88
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 58/84 (69%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN++++ + +W +L +S PV+ A +G++++ +QALTQIQ+ TL F+ K++A+ I
Sbjct: 1 MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
TL++S P++ G + ++ ++ RI
Sbjct: 61 TLMVSYPWLSGILLNYTRQIMLRI 84
>gi|224438532|ref|ZP_03659452.1| flagellar biosynthesis protein FliQ [Helicobacter cinaedi CCUG
18818]
gi|313144959|ref|ZP_07807152.1| flagellar biosynthesis protein FliQ [Helicobacter cinaedi CCUG
18818]
gi|313129990|gb|EFR47607.1| flagellar biosynthesis protein FliQ [Helicobacter cinaedi CCUG
18818]
Length = 88
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 51/84 (60%)
Query: 3 EADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITL 62
EA ++ +A L S P+L + + +G+LI+ QA TQI E+TLTFVPKI+AV +
Sbjct: 2 EAQLMALAIQTYKLTLILSLPMLLAGLIVGLLISIFQATTQINEMTLTFVPKILAVVAVI 61
Query: 63 IISAPFIGGQISSFVTLVLSRIQS 86
I + P++ I+ + ++ + I S
Sbjct: 62 IFAMPWMINMITDYTRMLFTMISS 85
>gi|328911740|gb|AEB63336.1| component of the flagellar export machinery [Bacillus
amyloliquefaciens LL3]
Length = 81
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 47/77 (61%)
Query: 9 IARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPF 68
+A A++ L P+L A+ +G+L++ QA TQIQE TL F+PKI+AV + LI P+
Sbjct: 1 MAEKAVYVTLMICGPLLAIALIVGLLVSIFQATTQIQEQTLAFIPKIVAVMLGLIFFGPW 60
Query: 69 IGGQISSFVTLVLSRIQ 85
+ I SF T + S +
Sbjct: 61 MLSTILSFTTDLFSHLN 77
>gi|289208348|ref|YP_003460414.1| flagellar biosynthetic protein FliQ [Thioalkalivibrio sp. K90mix]
gi|288943979|gb|ADC71678.1| flagellar biosynthetic protein FliQ [Thioalkalivibrio sp. K90mix]
Length = 89
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 45/66 (68%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+++ R + ++ +AP L +A+ +G+ I LQA TQIQE+TL+F+PK++A+F
Sbjct: 1 MTPEMVVDVGRETLTVVVLLAAPPLLTALAVGLAIGMLQAATQIQEMTLSFIPKLLAMFA 60
Query: 61 TLIISA 66
L+IS
Sbjct: 61 ALLISG 66
>gi|254474996|ref|ZP_05088382.1| flagellar biosynthetic protein FliQ [Ruegeria sp. R11]
gi|214029239|gb|EEB70074.1| flagellar biosynthetic protein FliQ [Ruegeria sp. R11]
Length = 90
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 46/76 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
++E + R A+WT + S P+L A+ +G+ I QALT +QE+TLTFVPK+ A+ I
Sbjct: 2 LSEGIFYDTLRQALWTSVIMSTPILLVALVVGLAIGLFQALTSVQEMTLTFVPKVTAIVI 61
Query: 61 TLIISAPFIGGQISSF 76
++ F+ + +F
Sbjct: 62 VFWMTMGFMTQSLVAF 77
>gi|255264177|ref|ZP_05343519.1| flagellar biosynthetic protein FliQ [Thalassiobium sp. R2A62]
gi|255106512|gb|EET49186.1| flagellar biosynthetic protein FliQ [Thalassiobium sp. R2A62]
Length = 89
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 45/76 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
+NE +I R +W + S P+L A+ G+++ QALT IQE+TLTFVPK+ A+
Sbjct: 2 LNEQVFFDILRQGLWIAVMMSLPILAVALATGLVVGLFQALTSIQEMTLTFVPKLGAILA 61
Query: 61 TLIISAPFIGGQISSF 76
++ F+ +SSF
Sbjct: 62 VFWVTMGFMTQTLSSF 77
>gi|186477689|ref|YP_001859159.1| flagellar biosynthetic protein FliQ [Burkholderia phymatum
STM815]
gi|184194148|gb|ACC72113.1| flagellar biosynthetic protein FliQ [Burkholderia phymatum
STM815]
Length = 89
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 52/86 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V +A AM+ L +AP LF + +G++++ QA TQI E TL+F+PK+ A+ +
Sbjct: 1 MTPETVTTLAHEAMYIALLLAAPPLFVGLVVGLIVSLFQAATQINEATLSFIPKLFAIAV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
TL++ P++ ++ ++ + + I +
Sbjct: 61 TLVLIGPWMLAKMLDYMRHMFTSIPT 86
>gi|254517018|ref|ZP_05129076.1| flagellar biosynthetic protein FliQ [gamma proteobacterium
NOR5-3]
gi|219674523|gb|EED30891.1| flagellar biosynthetic protein FliQ [gamma proteobacterium
NOR5-3]
Length = 89
Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 56/88 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M VL + + A+W + + P+L SA+ +G+LI QA TQIQE+TL+F+PK++A+ +
Sbjct: 1 MGPETVLAVGKDALWLAVLLAGPLLLSALAVGLLIGIFQAATQIQEMTLSFIPKLLALVV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L+++ P++ + SF T + I S L
Sbjct: 61 ALLVAGPWMIQVVVSFSTRLFREIPSLL 88
>gi|77463635|ref|YP_353139.1| flagellar protein FliQ [Rhodobacter sphaeroides 2.4.1]
gi|332558491|ref|ZP_08412813.1| flagellar biosynthetic protein FliQ [Rhodobacter sphaeroides
WS8N]
gi|3435110|gb|AAC32323.1| flagellar protein FliQ [Rhodobacter sphaeroides]
gi|77388053|gb|ABA79238.1| Flagellar protein FliQ [Rhodobacter sphaeroides 2.4.1]
gi|332276203|gb|EGJ21518.1| flagellar biosynthetic protein FliQ [Rhodobacter sphaeroides
WS8N]
Length = 88
Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 51/86 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ +E R A W IL ++ PVL A+ +G++I LQA T I E TL+FVPK+ V +
Sbjct: 1 MDFDGSIEHLRLAYWNILLTAGPVLGVALAVGLVIGILQAATSINESTLSFVPKLAIVLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
T+ +++ F+ +++ + V I +
Sbjct: 61 TMALASSFMLTRMTDYFAFVFETIAT 86
>gi|78358621|ref|YP_390070.1| flagellar biosynthetic protein FliQ [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
gi|78221026|gb|ABB40375.1| flagellar biosynthetic protein FliQ [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
Length = 89
Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 54/86 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ AR A+ L+ S P+L + +G+ ++ +QA TQIQE TL+F+PKI+++F+
Sbjct: 1 MTPEFVVGFARQAIELALTISLPMLGIGLAVGVFVSVIQAATQIQETTLSFIPKIVSIFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
L++S P+I ++ +F V I +
Sbjct: 61 ALLVSFPWIMDKMLAFTREVFINIPN 86
>gi|221639478|ref|YP_002525740.1| Flagellar protein FliQ [Rhodobacter sphaeroides KD131]
gi|221160259|gb|ACM01239.1| Flagellar protein FliQ [Rhodobacter sphaeroides KD131]
Length = 89
Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 50/86 (58%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ +E R A W IL ++ PVL A+ +G+ I LQA T I E TL+FVPK+ V +
Sbjct: 2 MDFDGSIEHLRLAYWNILLTAGPVLGVALAVGLFIGILQAATSINESTLSFVPKLAIVLL 61
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
T+ +++ F+ +++ + V I +
Sbjct: 62 TMALASSFMLTRMTDYFAFVFETIAT 87
>gi|126462467|ref|YP_001043581.1| flagellar biosynthetic protein FliQ [Rhodobacter sphaeroides ATCC
17029]
gi|126104131|gb|ABN76809.1| flagellar biosynthetic protein FliQ [Rhodobacter sphaeroides ATCC
17029]
Length = 88
Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 49/80 (61%)
Query: 7 LEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISA 66
+E R A W IL ++ PVL A+ +G++I LQA T I E TL+FVPK+ V +T+ +++
Sbjct: 7 IEHLRLAYWNILLTAGPVLGVALAVGLVIGILQAATSINESTLSFVPKLAIVLLTMALAS 66
Query: 67 PFIGGQISSFVTLVLSRIQS 86
F+ +++ + V I +
Sbjct: 67 SFMLTRMTDYFAFVFETIAA 86
>gi|294084390|ref|YP_003551148.1| flagellar biosynthetic protein FliQ [Candidatus Puniceispirillum
marinum IMCC1322]
gi|292663963|gb|ADE39064.1| flagellar biosynthetic protein FliQ [Candidatus Puniceispirillum
marinum IMCC1322]
Length = 88
Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 49/84 (58%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ +E R A W I+ ++ P+L A+ +G+LI QA T I E TL+FVPK++ V +
Sbjct: 1 MDFDSNVEFLRIAFWQIIIAAGPLLGVALAIGLLIGIFQAATSINEQTLSFVPKLVIVML 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
T + + F+ Q+S + + +I
Sbjct: 61 TFGLVSSFMLAQLSDYFAFIFDQI 84
>gi|56695102|ref|YP_165449.1| flagellar biosynthetic protein FliQ [Ruegeria pomeroyi DSS-3]
gi|56676839|gb|AAV93505.1| flagellar biosynthetic protein FliQ [Ruegeria pomeroyi DSS-3]
Length = 90
Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E + R +W + +S P+L A+ G+ + QALT IQE+TLTFVPK+ A+ I
Sbjct: 2 MSEGLFYDTVRQGLWIAVITSVPILSVALIAGLAVGLFQALTSIQEMTLTFVPKLAAIVI 61
Query: 61 TLIISAPFIGGQISSFVTLVL 81
IS F+ + ++ T L
Sbjct: 62 VFWISMGFMTQTLVNYFTTTL 82
>gi|297538205|ref|YP_003673974.1| flagellar biosynthetic protein FliQ [Methylotenera sp. 301]
gi|297257552|gb|ADI29397.1| flagellar biosynthetic protein FliQ [Methylotenera sp. 301]
Length = 89
Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 51/86 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + R AM L +AP+L + +G+L++ QA TQI E TL+F+PK++ VF
Sbjct: 1 MTPESVMTLGRDAMEITLLVAAPILLVVLAIGLLVSIFQAATQINEATLSFIPKLVGVFG 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
TL+ + ++ + ++ LV + I +
Sbjct: 61 TLMFAGQWMLTTLVDYMHLVFTSIPA 86
>gi|205352864|ref|YP_002226665.1| type III secretion protein [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|205272645|emb|CAR37555.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|309243392|gb|ADO51968.1| SsaS [Salmonella enterica subsp. enterica serovar Gallinarum]
gi|326627936|gb|EGE34279.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9]
Length = 88
Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 58/84 (69%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN++++ + +W +L +S PV+ A +G++++ +QALTQIQ+ TL F+ K++A+ I
Sbjct: 1 MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
TL++S P++ G + ++ ++ R+
Sbjct: 61 TLMVSYPWLSGILLNYTRQIMLRV 84
>gi|16760491|ref|NP_456108.1| type III secretion protein [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
gi|29141749|ref|NP_805091.1| type III secretion protein [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|213162231|ref|ZP_03347941.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Typhi str. E00-7866]
gi|213416631|ref|ZP_03349775.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Typhi str. E01-6750]
gi|213426015|ref|ZP_03358765.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Typhi str. E02-1180]
gi|213581366|ref|ZP_03363192.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
gi|213613056|ref|ZP_03370882.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
gi|213647288|ref|ZP_03377341.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
gi|213854183|ref|ZP_03382715.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
gi|289805084|ref|ZP_06535713.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Typhi str. AG3]
gi|289827205|ref|ZP_06545928.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Typhi str. E98-3139]
gi|25303010|pir||AH0696 probable type III secretion protein ssaS [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16502787|emb|CAD01945.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Typhi]
gi|29137377|gb|AAO68940.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
Length = 88
Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 58/84 (69%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN++++ + +W +L +S PV+ A +G++++ +QALTQIQ+ TL F+ K++A+ I
Sbjct: 1 MNDSELTQFITQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
TL++S P++ G + ++ ++ RI
Sbjct: 61 TLMVSYPWLSGILLNYTRQIMLRI 84
>gi|148380605|ref|YP_001255146.1| flagellar biosynthesis protein FliQ [Clostridium botulinum A str.
ATCC 3502]
gi|153930978|ref|YP_001384892.1| flagellar biosynthesis protein FliQ [Clostridium botulinum A str.
ATCC 19397]
gi|153937262|ref|YP_001388361.1| flagellar biosynthesis protein FliQ [Clostridium botulinum A str.
Hall]
gi|153940246|ref|YP_001391948.1| flagellar biosynthesis protein FliQ [Clostridium botulinum F str.
Langeland]
gi|168180928|ref|ZP_02615592.1| flagellar biosynthesis protein FliQ [Clostridium botulinum NCTC
2916]
gi|168182730|ref|ZP_02617394.1| flagellar biosynthesis protein FliQ [Clostridium botulinum Bf]
gi|226950060|ref|YP_002805151.1| flagellar biosynthesis protein FliQ [Clostridium botulinum A2
str. Kyoto]
gi|237796087|ref|YP_002863639.1| flagellar biosynthesis protein FliQ [Clostridium botulinum Ba4
str. 657]
gi|148290089|emb|CAL84208.1| flagellar biosynthetic protein [Clostridium botulinum A str. ATCC
3502]
gi|152927022|gb|ABS32522.1| flagellar biosynthesis protein FliQ [Clostridium botulinum A str.
ATCC 19397]
gi|152933176|gb|ABS38675.1| flagellar biosynthesis protein FliQ [Clostridium botulinum A str.
Hall]
gi|152936142|gb|ABS41640.1| flagellar biosynthesis protein FliQ [Clostridium botulinum F str.
Langeland]
gi|182668265|gb|EDT80244.1| flagellar biosynthesis protein FliQ [Clostridium botulinum NCTC
2916]
gi|182674208|gb|EDT86169.1| flagellar biosynthesis protein FliQ [Clostridium botulinum Bf]
gi|226842552|gb|ACO85218.1| flagellar biosynthesis protein FliQ [Clostridium botulinum A2
str. Kyoto]
gi|229263883|gb|ACQ54916.1| flagellar biosynthesis protein FliQ [Clostridium botulinum Ba4
str. 657]
gi|295319966|gb|ADG00344.1| flagellar biosynthesis protein FliQ [Clostridium botulinum F str.
230613]
Length = 89
Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 52/76 (68%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E V+ I + A+ T L SAP+L ++ +G++I+ QA TQIQE TLTFVPK+IAV +
Sbjct: 1 MSENMVMGIIKDAIQTGLLISAPILTISILVGLIISIFQATTQIQEQTLTFVPKLIAVAV 60
Query: 61 TLIISAPFIGGQISSF 76
+++ ++ Q+ +F
Sbjct: 61 VGLLTGSWMLHQLLAF 76
>gi|163738062|ref|ZP_02145478.1| flagellar biosynthetic protein FliQ [Phaeobacter gallaeciensis
BS107]
gi|163742542|ref|ZP_02149928.1| flagellar biosynthetic protein FliQ [Phaeobacter gallaeciensis
2.10]
gi|161384127|gb|EDQ08510.1| flagellar biosynthetic protein FliQ [Phaeobacter gallaeciensis
2.10]
gi|161388678|gb|EDQ13031.1| flagellar biosynthetic protein FliQ [Phaeobacter gallaeciensis
BS107]
Length = 90
Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 42/69 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E + R A+W + S P+L A+ +G+ I QALT +QE+TLTFVPK+ A+ +
Sbjct: 2 MSEGLFYDTLRQALWASVMMSTPILLVALVVGLAIGLFQALTSVQEMTLTFVPKLTAILV 61
Query: 61 TLIISAPFI 69
++ F+
Sbjct: 62 VFWMTMGFM 70
>gi|33596844|ref|NP_884487.1| putative type III secretion protein [Bordetella parapertussis
12822]
gi|33600618|ref|NP_888178.1| putative type III secretion protein [Bordetella bronchiseptica
RB50]
gi|33568217|emb|CAE32130.1| putative type III secretion protein [Bordetella bronchiseptica
RB50]
gi|33573545|emb|CAE37536.1| putative type III secretion protein [Bordetella parapertussis]
Length = 91
Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 48/76 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M D++ A++ +L S P + A +G L + LQALTQ+QE TL+F K+IAVF
Sbjct: 4 MQTQDLVSFMTQALYLVLWLSLPPIAVAAIVGTLFSLLQALTQVQEQTLSFAVKLIAVFA 63
Query: 61 TLIISAPFIGGQISSF 76
TL+++A +I +I +F
Sbjct: 64 TLMLAARWISAEIYNF 79
>gi|170756651|ref|YP_001782264.1| flagellar biosynthesis protein FliQ [Clostridium botulinum B1
str. Okra]
gi|170758611|ref|YP_001787968.1| flagellar biosynthesis protein FliQ [Clostridium botulinum A3
str. Loch Maree]
gi|187778763|ref|ZP_02995236.1| hypothetical protein CLOSPO_02358 [Clostridium sporogenes ATCC
15579]
gi|169121863|gb|ACA45699.1| flagellar biosynthesis protein FliQ [Clostridium botulinum B1
str. Okra]
gi|169405600|gb|ACA54011.1| flagellar biosynthesis protein FliQ [Clostridium botulinum A3
str. Loch Maree]
gi|187772388|gb|EDU36190.1| hypothetical protein CLOSPO_02358 [Clostridium sporogenes ATCC
15579]
Length = 89
Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 55/84 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E V+ I + A+ T L SAP+L ++ +G++I+ QA TQIQE TLTFVPK+IAV +
Sbjct: 1 MSENMVMGIIKDAIQTGLLVSAPILTISILVGLIISIFQATTQIQEQTLTFVPKLIAVAL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
+++ ++ Q+ +F + + I
Sbjct: 61 VGLLTGSWMLHQLLAFTERIFAMI 84
>gi|32265937|ref|NP_859969.1| flagellar biosynthesis protein FliQ [Helicobacter hepaticus ATCC
51449]
gi|32261986|gb|AAP77035.1| flagellar basal body protein FliQ [Helicobacter hepaticus ATCC
51449]
Length = 88
Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 51/84 (60%)
Query: 3 EADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITL 62
EA ++ +A L S P+L + + +G+LI+ QA TQI E+TLTFVPKI+AV +
Sbjct: 2 EAQLMALAIQTYKLTLILSLPMLLAGLIVGLLISIFQATTQINEMTLTFVPKILAVVAVI 61
Query: 63 IISAPFIGGQISSFVTLVLSRIQS 86
I + P++ I+ + ++ + I +
Sbjct: 62 IFTMPWMINMITDYTRMLFTMISN 85
>gi|226941266|ref|YP_002796340.1| FliQ1 [Laribacter hongkongensis HLHK9]
gi|226716193|gb|ACO75331.1| FliQ1 [Laribacter hongkongensis HLHK9]
Length = 89
Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 56/84 (66%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + + A+ ++ ++P+L ++ +G+L++ QA TQI E+TLTF+PK++A+F+
Sbjct: 1 MTPEHVINLVQNALLILILIASPLLAVSLGVGLLVSVFQAATQINEMTLTFIPKLLAMFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
T+I++ P++ ++ F + S I
Sbjct: 61 TVILAGPWMLRTLTDFTIRLYSSI 84
>gi|117928066|ref|YP_872617.1| flagellar biosynthetic protein FliQ [Acidothermus cellulolyticus
11B]
gi|117648529|gb|ABK52631.1| flagellar biosynthetic protein FliQ [Acidothermus cellulolyticus
11B]
Length = 91
Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 44/69 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + V+ +A AM AP+L +++ +G I+ QA TQIQE TL+FVPKI+AV I
Sbjct: 1 MTDTAVIHLAMQAMVVAAKLCAPILLTSLLVGFGISLFQAATQIQEFTLSFVPKILAVGI 60
Query: 61 TLIISAPFI 69
+++S ++
Sbjct: 61 AIVVSGHWM 69
>gi|46445835|ref|YP_007200.1| type III secretion inner membrane protein SctS [Candidatus
Protochlamydia amoebophila UWE25]
gi|46399476|emb|CAF22925.1| probable type III secretion inner membrane protein SctS
[Candidatus Protochlamydia amoebophila UWE25]
Length = 78
Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 47/71 (66%), Gaps = 4/71 (5%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M ++ V+++A M IL SAP + +MF GI++A QA TQIQE TL+F K++AV +
Sbjct: 1 MFQSQVVQLAYQGMLLILILSAPPILVSMFFGIIVAIFQAATQIQEQTLSFTIKLVAVTL 60
Query: 61 TLIISAPFIGG 71
TL+ F+GG
Sbjct: 61 TLM----FLGG 67
>gi|319649550|ref|ZP_08003706.1| flagellar biosynthesis protein Q [Bacillus sp. 2_A_57_CT2]
gi|317398712|gb|EFV79394.1| flagellar biosynthesis protein Q [Bacillus sp. 2_A_57_CT2]
Length = 89
Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 49/84 (58%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ IA + T+L P+L A+ +G++++ QA TQIQE TL F+PKI+AV +
Sbjct: 1 MTPETVISIAERGIITVLMICGPLLILALVVGLVVSIFQATTQIQEQTLAFIPKIVAVLV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
++ P++ + S+ + S +
Sbjct: 61 GVVFFGPWMLSHMLSYANEIFSNL 84
>gi|126697833|ref|YP_001086730.1| flagellar export protein [Clostridium difficile 630]
gi|255099429|ref|ZP_05328406.1| flagellar export protein [Clostridium difficile QCD-63q42]
gi|115249270|emb|CAJ67083.1| Flagellar biosynthetic protein FliQ [Clostridium difficile]
Length = 89
Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 53/84 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E ++ + + M+T +APVL ++ +G+LI+ QA TQIQE TLTFVPK+IA+ +
Sbjct: 1 MSEFMIMSVLKNGMFTGAMIAAPVLIVSLVVGLLISVFQATTQIQEQTLTFVPKLIAILL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
+ I ++ + SF + + + I
Sbjct: 61 VVAIGGSWMLHTLISFTSEIFNMI 84
>gi|222053617|ref|YP_002535979.1| flagellar biosynthetic protein FliQ [Geobacter sp. FRC-32]
gi|221562906|gb|ACM18878.1| flagellar biosynthetic protein FliQ [Geobacter sp. FRC-32]
Length = 89
Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 6 VLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIIS 65
V+++AR + T L SAP+L ++ +G+LI+ QA+T I E TL F PKI AV + LII
Sbjct: 6 VVQLARRSFETTLLLSAPLLTFSLVVGLLISIFQAITSINEATLAFAPKIAAVMVALIIF 65
Query: 66 APFIGGQISSFVTLVLSRIQS 86
P++ +S F + + I +
Sbjct: 66 FPWMMSYMSDFTREIYNMIPN 86
>gi|237751246|ref|ZP_04581726.1| flagellar biosynthesis protein FliQ [Helicobacter bilis ATCC
43879]
gi|229372612|gb|EEO23003.1| flagellar biosynthesis protein FliQ [Helicobacter bilis ATCC
43879]
Length = 88
Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 43/66 (65%)
Query: 21 SAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLV 80
S PVL A+ +G+LI+ QA TQI E+TL FVPKI+AV +I + P++ + F +V
Sbjct: 20 SLPVLLVALIMGLLISIFQATTQINEMTLAFVPKILAVVAMIIFTMPWMLNMLMDFTKMV 79
Query: 81 LSRIQS 86
++ I +
Sbjct: 80 INMIPT 85
>gi|89056686|ref|YP_512137.1| export protein FliQ [Jannaschia sp. CCS1]
gi|88866235|gb|ABD57112.1| flagellar biosynthetic protein FliQ [Jannaschia sp. CCS1]
Length = 88
Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 46/78 (58%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E + R +W + + P+L +A+ GI++ QALT +QE+TLTFVPK+ A+ +
Sbjct: 1 MDEMIFFDTMRQGLWISVVVATPILAAALVSGIVVGLFQALTSVQEMTLTFVPKLAAIVV 60
Query: 61 TLIISAPFIGGQISSFVT 78
+S F+ + S+ T
Sbjct: 61 VFWVSMGFMSQTLVSYFT 78
>gi|83647783|ref|YP_436218.1| type III secretory pathway subunit EscS [Hahella chejuensis KCTC
2396]
gi|83635826|gb|ABC31793.1| Type III secretory pathway, component EscS [Hahella chejuensis
KCTC 2396]
Length = 90
Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 55/85 (64%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+EA+V+ A + +L S P + A +G L++ +Q+LTQIQ+ TL+F K+IAV I
Sbjct: 1 MSEAEVIHYASQLLMLVLVLSMPTVIVAAVVGTLVSLVQSLTQIQDQTLSFAIKLIAVSI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
T++++A ++G +I F +L I+
Sbjct: 61 TIMLTARWLGIEIYHFSMNILDHIE 85
>gi|162147442|ref|YP_001601903.1| flagellar biosynthetic protein fliQ [Gluconacetobacter
diazotrophicus PAl 5]
gi|209545552|ref|YP_002277781.1| export protein FliQ family 3 [Gluconacetobacter diazotrophicus
PAl 5]
gi|161786019|emb|CAP55601.1| putative flagellar biosynthetic protein fliQ [Gluconacetobacter
diazotrophicus PAl 5]
gi|209533229|gb|ACI53166.1| export protein FliQ family 3 [Gluconacetobacter diazotrophicus
PAl 5]
Length = 91
Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 49/83 (59%)
Query: 2 NEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFIT 61
+ D+ +I R + + AP L +++ G+L++ QA+TQ+ E TL+FVPK +A
Sbjct: 3 HTVDIHDILRQTLIVAVKMGAPSLLASLCAGVLVSLFQAMTQVNEATLSFVPKFVAAMAA 62
Query: 62 LIISAPFIGGQISSFVTLVLSRI 84
L+++ F+ ++++ ++ ++
Sbjct: 63 LLLTGSFMYSTLNTYAHVIFDQM 85
>gi|294141000|ref|YP_003556978.1| type III secretion system EscS protein [Shewanella violacea
DSS12]
gi|293327469|dbj|BAJ02200.1| type III secretion system EscS protein [Shewanella violacea
DSS12]
Length = 102
Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 55/84 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E ++ + +W +L S PV+ A +G++++ +QALTQIQ+ TL F+ K++AV I
Sbjct: 14 MSENIIMHLTSELLWIVLLLSLPVVIVASIIGVIVSLVQALTQIQDQTLQFLIKLVAVCI 73
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
TL++S ++GG + ++ + +I
Sbjct: 74 TLVVSYHWMGGSLLNYAGMTFDQI 97
>gi|302874604|ref|YP_003843237.1| flagellar biosynthetic protein FliQ [Clostridium cellulovorans
743B]
gi|307690785|ref|ZP_07633231.1| flagellar biosynthesis protein FliQ [Clostridium cellulovorans
743B]
gi|302577461|gb|ADL51473.1| flagellar biosynthetic protein FliQ [Clostridium cellulovorans
743B]
Length = 89
Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 47/69 (68%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E + + + A+ T L SAP+L +A+ +G++I+ QA TQIQE TLTFVPK+I + +
Sbjct: 1 MSENMLATVMKDAITTGLLMSAPILITAILVGLIISIFQATTQIQEQTLTFVPKLIGIAL 60
Query: 61 TLIISAPFI 69
IIS ++
Sbjct: 61 VGIISGRWM 69
>gi|295399825|ref|ZP_06809806.1| flagellar biosynthetic protein FliQ [Geobacillus
thermoglucosidasius C56-YS93]
gi|312111663|ref|YP_003989979.1| flagellar biosynthetic protein FliQ [Geobacillus sp. Y4.1MC1]
gi|294978228|gb|EFG53825.1| flagellar biosynthetic protein FliQ [Geobacillus
thermoglucosidasius C56-YS93]
gi|311216764|gb|ADP75368.1| flagellar biosynthetic protein FliQ [Geobacillus sp. Y4.1MC1]
Length = 89
Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
Query: 4 AD-VLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITL 62
AD V+ +A ++ IL S P+L ++ +G++I+ QA TQIQE TL FVPKI+AV + L
Sbjct: 3 ADFVIRMAEQGVYAILIVSGPLLLLSLAVGLIISIFQATTQIQEQTLAFVPKIVAVLVGL 62
Query: 63 IISAPFIGGQISSFVTLVLSRI 84
+ P++ +I S+ +L+ +
Sbjct: 63 VFFGPWMLTKIVSYAYEILNNL 84
>gi|239909256|ref|YP_002955998.1| flagellar biosynthetic protein FliQ [Desulfovibrio magneticus
RS-1]
gi|239799123|dbj|BAH78112.1| flagellar biosynthetic protein FliQ [Desulfovibrio magneticus
RS-1]
Length = 89
Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 52/71 (73%)
Query: 6 VLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIIS 65
V+ ++R A+ L + P+L ++ +G+ ++ LQA TQIQE+TLTFVPKI+++FI L+++
Sbjct: 6 VVALSRQAIELALFLALPMLGVSLVVGVFVSVLQAATQIQEMTLTFVPKILSMFIALLLA 65
Query: 66 APFIGGQISSF 76
P++ ++ +F
Sbjct: 66 FPWMMDKMLNF 76
>gi|322806977|emb|CBZ04547.1| flagellar biosynthesis protein FliQ [Clostridium botulinum H04402
065]
Length = 89
Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 55/84 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E V+ I + A+ T L SAP+L ++ +G++I+ QA TQIQE TLTFVPK+IAV +
Sbjct: 1 MSENMVMGIIKDAIQTGLLISAPILTISILVGLIISIFQATTQIQEQTLTFVPKLIAVAL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
+++ ++ Q+ +F + + I
Sbjct: 61 VGLLTGSWMLHQLLAFTERIFAMI 84
>gi|77464906|ref|YP_354410.1| flagellar biosynthetic protein FliQ [Rhodobacter sphaeroides
2.4.1]
gi|126463748|ref|YP_001044862.1| export protein FliQ [Rhodobacter sphaeroides ATCC 17029]
gi|221640827|ref|YP_002527089.1| Export protein FliQ, family 3 [Rhodobacter sphaeroides KD131]
gi|77389324|gb|ABA80509.1| flagellar biosynthetic protein FliQ [Rhodobacter sphaeroides
2.4.1]
gi|126105412|gb|ABN78090.1| export protein FliQ, family 3 [Rhodobacter sphaeroides ATCC
17029]
gi|221161608|gb|ACM02588.1| Export protein FliQ, family 3 [Rhodobacter sphaeroides KD131]
Length = 88
Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 47/78 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E + + R +W + S+P+L A+ G+ I LQALT +QE+TLTFVPK+ A+ +
Sbjct: 1 MSELALYDALRQGLWVAVLISSPLLGVALVAGVTIGLLQALTSVQEMTLTFVPKVGAMLL 60
Query: 61 TLIISAPFIGGQISSFVT 78
+S F+ + +F T
Sbjct: 61 VFWVSMSFMTTTLVAFFT 78
>gi|332559804|ref|ZP_08414126.1| FliQ2 [Rhodobacter sphaeroides WS8N]
gi|332277516|gb|EGJ22831.1| FliQ2 [Rhodobacter sphaeroides WS8N]
Length = 88
Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 47/78 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E + + R +W + S+P+L A+ G+ I LQALT +QE+TLTFVPK+ A+ +
Sbjct: 1 MSELALYDALRQGLWVAVLISSPLLGVALVAGVTIGLLQALTSVQEMTLTFVPKVGAMLL 60
Query: 61 TLIISAPFIGGQISSFVT 78
+S F+ + +F T
Sbjct: 61 VFWVSMSFMTTTLVAFFT 78
>gi|237753285|ref|ZP_04583765.1| flagellar biosynthetic protein [Helicobacter winghamensis ATCC
BAA-430]
gi|229375552|gb|EEO25643.1| flagellar biosynthetic protein [Helicobacter winghamensis ATCC
BAA-430]
Length = 88
Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 51/86 (59%)
Query: 3 EADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITL 62
EA ++ +A L S P+L + +G++I+ QA TQI E+TLTFVPKI+AV + +
Sbjct: 2 EAQLMNLAIETYKITLILSLPMLLVGLVVGLMISIFQATTQINEMTLTFVPKILAVIVVI 61
Query: 63 IISAPFIGGQISSFVTLVLSRIQSSL 88
I + P++ + F T + + + + L
Sbjct: 62 IFTMPWMLNMLIDFTTRIFNMMPTFL 87
>gi|42524693|ref|NP_970073.1| flagellar biosynthetic protein FliQ [Bdellovibrio bacteriovorus
HD100]
gi|39576903|emb|CAE78132.1| flagellar biosynthetic protein FliQ [Bdellovibrio bacteriovorus
HD100]
Length = 90
Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 48/76 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + V+ + + A+ T +AP+L S + +G+ ++ QALTQI E TLTF+PK+I V
Sbjct: 1 MTDELVIRLGQDALRTTAMLAAPLLISTLVVGLAVSIFQALTQINEATLTFIPKMIVVAA 60
Query: 61 TLIISAPFIGGQISSF 76
+++ P++ +SS+
Sbjct: 61 VFVLAGPWMMDVMSSY 76
>gi|254459562|ref|ZP_05072978.1| flagellar biosynthetic protein FliQ [Rhodobacterales bacterium
HTCC2083]
gi|206676151|gb|EDZ40638.1| flagellar biosynthetic protein FliQ [Rhodobacteraceae bacterium
HTCC2083]
Length = 88
Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 3 EADV-LEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFIT 61
E D+ +E R A W I+ ++ P+L A+ +G++I LQA T I E T++FVPK++ V +
Sbjct: 2 EFDINVESLRGAYWQIIMTAGPILVVALSVGLIIGILQAATSINEATISFVPKLVVVLLA 61
Query: 62 LIISAPFIGGQISSFVTLVLSRIQ 85
+ + + F+ ++ + ++ +I+
Sbjct: 62 MALLSTFMMREMVDYFAMIFDQIR 85
>gi|108761227|ref|YP_633785.1| putative type III secretion system protein [Myxococcus xanthus DK
1622]
gi|108465107|gb|ABF90292.1| putative type III secretion system protein [Myxococcus xanthus DK
1622]
Length = 89
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 48/76 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + L + R A+ ++ +S P + +++ +G L + QA TQ+QE TL+ VPK+ A +
Sbjct: 1 MTQDVFLTLGREALLLMVMASLPPIGASLVVGFLSSLFQATTQLQESTLSVVPKLCAAVL 60
Query: 61 TLIISAPFIGGQISSF 76
L+++ P+I GQ++ F
Sbjct: 61 ALVLAGPWIAGQLTRF 76
>gi|260893863|ref|YP_003239960.1| flagellar biosynthetic protein FliQ [Ammonifex degensii KC4]
gi|260866004|gb|ACX53110.1| flagellar biosynthetic protein FliQ [Ammonifex degensii KC4]
Length = 90
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 51/83 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M++A L++ A + +L + P L + +G+++ LQA TQIQ+ ++FVPKI+AVF+
Sbjct: 1 MSQAMALDLVTKAFFLVLLLAGPALLVSALVGLVVGILQATTQIQDQMISFVPKIVAVFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSR 83
TL + P + SF +++R
Sbjct: 61 TLALCFPLFLRLMISFTQEIMAR 83
>gi|238899256|ref|YP_002924939.1| type III secretion system apparatus protein [Candidatus
Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
gi|75906099|gb|ABA29441.1| putative type III secretion system protein [Candidatus
Hamiltonella defensa]
gi|229467017|gb|ACQ68791.1| type III secretion system apparatus protein [Candidatus
Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
Length = 89
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 50/76 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ A ++++ +W +L S PV+ A +G++++ QALTQIQ+ TL F+ K++AV +
Sbjct: 1 MSNAIIIQLTTQVLWIVLILSMPVVVVASLVGLMVSLFQALTQIQDQTLQFLIKLLAVCL 60
Query: 61 TLIISAPFIGGQISSF 76
L++S ++G + ++
Sbjct: 61 CLLMSYHWMGSTMLNY 76
>gi|307824490|ref|ZP_07654715.1| flagellar biosynthetic protein FliQ [Methylobacter tundripaludum
SV96]
gi|307734474|gb|EFO05326.1| flagellar biosynthetic protein FliQ [Methylobacter tundripaludum
SV96]
Length = 89
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 39/59 (66%)
Query: 9 IARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAP 67
+ + AM + +APVL ++ +G++IA QA TQI E TLTFVPK+I + I L+I P
Sbjct: 9 VGQEAMIVAVKLTAPVLLPSLAVGLIIAMFQAATQINEATLTFVPKVIVIGIVLMIMGP 67
>gi|238757866|ref|ZP_04619048.1| Secretion system apparatus protein ssaS [Yersinia aldovae ATCC
35236]
gi|238703851|gb|EEP96386.1| Secretion system apparatus protein ssaS [Yersinia aldovae ATCC
35236]
Length = 75
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 49/74 (66%)
Query: 14 MWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQI 73
MW +L +S PV+ A +GI ++ QALTQIQ+ TL F+ K++AV + L+++ ++GG +
Sbjct: 1 MWLVLMTSLPVVLVASVVGIAVSLFQALTQIQDQTLQFMIKLLAVALMLMVTYHWLGGLL 60
Query: 74 SSFVTLVLSRIQSS 87
++ VL +I +
Sbjct: 61 LAYTRQVLLQIGTH 74
>gi|295706269|ref|YP_003599344.1| flagellar biosynthetic protein FliQ [Bacillus megaterium DSM 319]
gi|294803928|gb|ADF40994.1| flagellar biosynthetic protein FliQ [Bacillus megaterium DSM 319]
Length = 89
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 53/84 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN V+ +A ++TIL S P+L A+ +G++I+ QA TQIQE TL FVPKI+AV +
Sbjct: 1 MNGEFVISLAEKGVYTILIVSGPLLLLALVVGLIISIFQATTQIQEQTLAFVPKIVAVLV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
++ P++ ++ SF + S +
Sbjct: 61 GIVFFGPWMLSKMISFTHEIFSNL 84
>gi|254973926|ref|ZP_05270398.1| flagellar export protein [Clostridium difficile QCD-66c26]
gi|255091313|ref|ZP_05320791.1| flagellar export protein [Clostridium difficile CIP 107932]
gi|255305287|ref|ZP_05349459.1| flagellar export protein [Clostridium difficile ATCC 43255]
gi|255312970|ref|ZP_05354553.1| flagellar export protein [Clostridium difficile QCD-76w55]
gi|255515729|ref|ZP_05383405.1| flagellar export protein [Clostridium difficile QCD-97b34]
gi|255648823|ref|ZP_05395725.1| flagellar export protein [Clostridium difficile QCD-37x79]
gi|260682042|ref|YP_003213327.1| flagellar export protein [Clostridium difficile CD196]
gi|260685640|ref|YP_003216773.1| flagellar export protein [Clostridium difficile R20291]
gi|306518938|ref|ZP_07405285.1| flagellar export protein [Clostridium difficile QCD-32g58]
gi|260208205|emb|CBA60556.1| flagellar export protein [Clostridium difficile CD196]
gi|260211656|emb|CBE01919.1| flagellar export protein [Clostridium difficile R20291]
Length = 89
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 49/76 (64%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E ++ + + M+T +APVL ++ +G+LI+ QA TQIQE TLTFVPK+IA+ +
Sbjct: 1 MSEFMIMSVLKNGMFTGAMIAAPVLIVSLVVGLLISVFQATTQIQEQTLTFVPKLIAILL 60
Query: 61 TLIISAPFIGGQISSF 76
+ I ++ + SF
Sbjct: 61 VVAIGGSWMLHTLISF 76
>gi|238752376|ref|ZP_04613854.1| Secretion system apparatus protein ssaS [Yersinia rohdei ATCC
43380]
gi|238709417|gb|EEQ01657.1| Secretion system apparatus protein ssaS [Yersinia rohdei ATCC
43380]
Length = 89
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 51/76 (67%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ A V+ +A +W +L S PV+ A +G++++ LQALTQIQ+ TL F+ K++AV
Sbjct: 1 MSNAIVVHLATQLLWIVLLLSMPVVVVASAVGLIVSLLQALTQIQDQTLQFLIKLLAVSA 60
Query: 61 TLIISAPFIGGQISSF 76
TL+++ ++G + ++
Sbjct: 61 TLLLTYHWMGTTLLNY 76
>gi|322421720|ref|YP_004200943.1| flagellar biosynthetic protein FliQ [Geobacter sp. M18]
gi|320128107|gb|ADW15667.1| flagellar biosynthetic protein FliQ [Geobacter sp. M18]
Length = 89
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 47/76 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+++ R + ++ SAP+L A+ +G+LI+ QA+T I E TL F PKIIAV +
Sbjct: 1 MTPEMVVQLGRRSFEAVILLSAPLLICALVVGLLISIFQAVTSINEATLAFAPKIIAVMV 60
Query: 61 TLIISAPFIGGQISSF 76
+++ P++ +S F
Sbjct: 61 AMVVFFPWMMMYMSDF 76
>gi|239826629|ref|YP_002949253.1| flagellar biosynthesis protein FliQ [Geobacillus sp. WCH70]
gi|239806922|gb|ACS23987.1| flagellar biosynthetic protein FliQ [Geobacillus sp. WCH70]
Length = 89
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Query: 4 AD-VLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITL 62
AD V+ +A ++ IL P+L A+ +G++++ QA+TQIQE TL FVPKI+AV I L
Sbjct: 3 ADFVIHMAERGVYMILIVCGPLLLLALAVGLIVSIFQAMTQIQEQTLAFVPKIVAVLIGL 62
Query: 63 IISAPFIGGQISSFVTLVLSRI 84
I P++ ++ S+ + + +
Sbjct: 63 IFFGPWMLSRMVSYAYEIFNNL 84
>gi|183221910|ref|YP_001839906.1| flagellar biosynthetic protein FliQ [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Paris)']
gi|189911979|ref|YP_001963534.1| endoflagellar biosynthesis pathway protein [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Ames)']
gi|167776655|gb|ABZ94956.1| Endoflagellar biosynthesis pathway protein [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Ames)']
gi|167780332|gb|ABZ98630.1| Flagellar biosynthetic protein FliQ [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Paris)']
Length = 87
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 39/59 (66%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVF 59
M E DV+ + R A L S+P+L +A+ +G+++ LQ T IQE T+ FVPK++++F
Sbjct: 1 MTEVDVVNMMREAFIVTLKISSPILITALVVGLIVGILQTTTSIQEPTIAFVPKLVSIF 59
>gi|253573535|ref|ZP_04850878.1| flagellar biosynthetic protein FliQ [Paenibacillus sp. oral taxon
786 str. D14]
gi|251847063|gb|EES75068.1| flagellar biosynthetic protein FliQ [Paenibacillus sp. oral taxon
786 str. D14]
Length = 89
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 56/86 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ ++ +A A++T+L SAP+L A+ +G+L++ QA TQIQE TL FVPKI+AV +
Sbjct: 1 MSSEFIIGLAGQAVYTVLKVSAPMLVIALVVGLLVSIFQATTQIQEQTLAFVPKIVAVLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
L++ P+I + F +L+ + S
Sbjct: 61 ALLLFGPWILTTLVDFTYGILNNLSS 86
>gi|161503486|ref|YP_001570598.1| hypothetical protein SARI_01562 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160864833|gb|ABX21456.1| hypothetical protein SARI_01562 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 88
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 57/84 (67%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN++++ + +W +L +S PV+ A +G++++ +QALTQIQ+ TL F+ K++A+
Sbjct: 1 MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAT 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
TL++S P++ G + ++ ++ RI
Sbjct: 61 TLMVSYPWLSGILLNYTRQIMLRI 84
>gi|295696129|ref|YP_003589367.1| flagellar biosynthetic protein FliQ [Bacillus tusciae DSM 2912]
gi|295411731|gb|ADG06223.1| flagellar biosynthetic protein FliQ [Bacillus tusciae DSM 2912]
Length = 89
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 52/88 (59%), Gaps = 11/88 (12%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ +VL+I + + L S P L + +G++I+ QA+TQIQE TLTF+PK++AVF
Sbjct: 1 MSPDNVLQIGQETLRIALLLSLPFLGFTLVVGLIISIFQAVTQIQEPTLTFLPKVLAVFA 60
Query: 61 TLIISAPF-----------IGGQISSFV 77
+++ P+ I GQ+S F+
Sbjct: 61 VILLLGPWMLHTLLDYTEGIFGQLSGFI 88
>gi|296124298|ref|YP_003632076.1| export protein FliQ family 3 [Planctomyces limnophilus DSM 3776]
gi|296016638|gb|ADG69877.1| export protein FliQ family 3 [Planctomyces limnophilus DSM 3776]
Length = 91
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 46/76 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M LE+ R A+ L P L SAM +G++I+ QA+TQ+QE TL+FVPK++ + +
Sbjct: 1 MTSDTALELCRNAVVVALMVCLPSLMSAMLVGLIISLAQAVTQLQEQTLSFVPKLVIMLL 60
Query: 61 TLIISAPFIGGQISSF 76
+++ P+ + S+
Sbjct: 61 VALLTLPWSMSLMDSY 76
>gi|310659026|ref|YP_003936747.1| flagellar biosynthesis protein [Clostridium sticklandii DSM 519]
gi|308825804|emb|CBH21842.1| flagellar biosynthesis protein [Clostridium sticklandii]
Length = 89
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 50/76 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ V+ I + ++ +L SAP+L + +G++++ QA TQIQE TL FVPKI+AV +
Sbjct: 1 MDMDLVVGIMQQSLTMVLLLSAPMLIIGLLVGLIVSVFQATTQIQEATLAFVPKIVAVML 60
Query: 61 TLIISAPFIGGQISSF 76
++++ P++ + +F
Sbjct: 61 SMVVFGPWMMSSMVNF 76
>gi|149912832|ref|ZP_01901366.1| flagellar biosynthetic protein FliQ [Roseobacter sp. AzwK-3b]
gi|149813238|gb|EDM73064.1| flagellar biosynthetic protein FliQ [Roseobacter sp. AzwK-3b]
Length = 89
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
++E + R +W L S P+L A+ G+++ QALT IQE+TLTFVPK+ A+ +
Sbjct: 2 LDEVVFFDTMREGLWVSLIISVPILTMALLAGLIVGLFQALTSIQELTLTFVPKLGAIVL 61
Query: 61 TLIISAPFIGGQISSF 76
+S F+ + SF
Sbjct: 62 VFWLSMGFMTQTLVSF 77
>gi|148553143|ref|YP_001260725.1| flagellar biosynthetic protein FliQ [Sphingomonas wittichii RW1]
gi|148498333|gb|ABQ66587.1| flagellar biosynthetic protein FliQ [Sphingomonas wittichii RW1]
Length = 93
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Query: 9 IARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPF 68
IA+ AMW + +SAP+L A+ GI++ +QA T I E TL+FVPK+I V I L +
Sbjct: 13 IAQQAMWILALASAPILIPALVAGIILGMIQAATSINEQTLSFVPKLIVVGIALAL---- 68
Query: 69 IGGQI----SSFVTLVLSRIQSSL 88
GG I + F + +RI L
Sbjct: 69 FGGAILMLLADFTREIFARIPDML 92
>gi|325288790|ref|YP_004264971.1| flagellar biosynthetic protein FliQ [Syntrophobotulus glycolicus
DSM 8271]
gi|324964191|gb|ADY54970.1| flagellar biosynthetic protein FliQ [Syntrophobotulus glycolicus
DSM 8271]
Length = 90
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 53/76 (69%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + ++ +A+ AMWT+L P+L ++ +G++++ QA+TQIQE TL+F+PK++ + +
Sbjct: 1 MTQNQIIFMAKEAMWTVLLVGGPLLALSLLIGLVVSIFQAMTQIQEQTLSFIPKLVVIAV 60
Query: 61 TLIISAPFIGGQISSF 76
L++ P++ ++S+
Sbjct: 61 ALLLLGPWMLNIMTSY 76
>gi|296133032|ref|YP_003640279.1| flagellar biosynthetic protein FliQ [Thermincola sp. JR]
gi|296031610|gb|ADG82378.1| flagellar biosynthetic protein FliQ [Thermincola potens JR]
Length = 89
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 39/59 (66%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVF 59
M ++ I R A+ T+L S P+L +++ +G++I+ QA T IQE TLTFVPKI+ +
Sbjct: 1 MTPETIIGIGRDALITVLLISTPILATSLLIGVIISVFQAATHIQEQTLTFVPKILGIL 59
>gi|319764504|ref|YP_004128441.1| flagellar biosynthetic protein fliq [Alicycliphilus denitrificans
BC]
gi|317119065|gb|ADV01554.1| flagellar biosynthetic protein FliQ [Alicycliphilus denitrificans
BC]
Length = 89
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 6 VLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIIS 65
VL + R A+ +L + PVL M +G+L++ QA+TQI E TL FVPK+IA + I+
Sbjct: 6 VLTMGRDALTLLLMIAMPVLGVVMAVGLLVSIFQAVTQIHEATLAFVPKLIAAMVVFAIA 65
Query: 66 APFIGGQISSFVTLVLSRIQS 86
P++ IS+ V + I+S
Sbjct: 66 GPWM---ISTLVDFLRRTIES 83
>gi|242281273|ref|YP_002993402.1| flagellar biosynthetic protein FliQ [Desulfovibrio salexigens DSM
2638]
gi|242124167|gb|ACS81863.1| flagellar biosynthetic protein FliQ [Desulfovibrio salexigens DSM
2638]
Length = 89
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 50/76 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ A+ ++ L+ + P+L + +GI ++ +QA TQIQE+TLTFVPKI+++F+
Sbjct: 1 MTPEFVIGFAKQSIELALTLALPMLMVGLVVGIFVSVIQAATQIQEMTLTFVPKIVSMFL 60
Query: 61 TLIISAPFIGGQISSF 76
L+ + P+I ++ F
Sbjct: 61 ALLFAFPWIMDKMIDF 76
>gi|295111381|emb|CBL28131.1| flagellar biosynthetic protein FliQ [Synergistetes bacterium
SGP1]
Length = 91
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 50/71 (70%), Gaps = 5/71 (7%)
Query: 13 AMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQ 72
++WT+L S PVL AM +G+LI LQ T IQE TL F+PKI+AVFI +I+ +P++G +
Sbjct: 15 SIWTMLVVSLPVLLVAMSVGLLIGILQTATSIQEQTLIFIPKILAVFICIILLSPWMGQR 74
Query: 73 ISSFVTLVLSR 83
+ LV++R
Sbjct: 75 M-----LVMTR 80
>gi|33593239|ref|NP_880883.1| putative type III secretion protein [Bordetella pertussis Tohama
I]
gi|29603235|emb|CAC79580.1| bscS [Bordetella pertussis Tohama I]
gi|33563614|emb|CAE42515.1| putative type III secretion protein [Bordetella pertussis Tohama
I]
gi|332382648|gb|AEE67495.1| putative type III secretion protein [Bordetella pertussis CS]
Length = 88
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 47/76 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M D++ A++ +L S P + +G L + LQALTQ+QE TL+F K+IAVF
Sbjct: 1 MQTQDLVSFMTQALYLVLWLSLPPIAVVAIVGTLFSLLQALTQVQEQTLSFAVKLIAVFA 60
Query: 61 TLIISAPFIGGQISSF 76
TL+++A +I +I +F
Sbjct: 61 TLMLAARWISAEIYNF 76
>gi|84514805|ref|ZP_01002168.1| Flagellar protein FliQ [Loktanella vestfoldensis SKA53]
gi|84510964|gb|EAQ07418.1| Flagellar protein FliQ [Loktanella vestfoldensis SKA53]
Length = 88
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 7 LEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISA 66
+E RAA W I+ +S P+L A+ +G++I LQA T I E+TL+FVPK++ V + +
Sbjct: 7 IESLRAAFWQIIIASGPILGVALTVGLIIGILQAATSINEMTLSFVPKLVIVLAAMAALS 66
Query: 67 PFIGGQISSFVTLVLSRIQ 85
F+ +++ + + +I+
Sbjct: 67 SFMMQEMTDYFASIFEQIR 85
>gi|225850262|ref|YP_002730496.1| flagellar biosynthetic protein FliQ [Persephonella marina EX-H1]
gi|225645466|gb|ACO03652.1| flagellar biosynthetic protein FliQ [Persephonella marina EX-H1]
Length = 89
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + + + ++T L PV+ A +G+LI+ QA TQI E+TLTF+PKI+A +
Sbjct: 1 MTVDQAINLMQGMLFTSLMVGGPVILIAFIVGLLISIFQAATQIHEMTLTFIPKIVATIV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
LII ++ Q+ + VL I
Sbjct: 61 ALIIFGSWMFRQLVEYTQEVLKNI 84
>gi|330826720|ref|YP_004390023.1| flagellar biosynthetic protein FliQ [Alicycliphilus denitrificans
K601]
gi|329312092|gb|AEB86507.1| flagellar biosynthetic protein FliQ [Alicycliphilus denitrificans
K601]
Length = 89
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 6 VLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIIS 65
VL + R A+ +L + PVL M +G+L++ QA+TQI E TL FVPK+IA + I+
Sbjct: 6 VLTMGRDALTLLLMIALPVLGVVMAVGLLVSIFQAVTQIHEATLAFVPKLIAAMVVFAIA 65
Query: 66 APFIGGQISSFVTLVLSRIQS 86
P++ IS+ V + I+S
Sbjct: 66 GPWM---ISTLVDFLRRTIES 83
>gi|288573012|ref|ZP_06391369.1| export protein FliQ family 3 [Dethiosulfovibrio peptidovorans DSM
11002]
gi|288568753|gb|EFC90310.1| export protein FliQ family 3 [Dethiosulfovibrio peptidovorans DSM
11002]
Length = 89
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 42/68 (61%)
Query: 18 LSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFV 77
L +S P+L AM +G+++ LQ T IQE TL+FVPKIIA+ L++ P+I G +
Sbjct: 18 LMASLPILIVAMVVGLIVGILQTATSIQEQTLSFVPKIIAIMGALVVMGPWIFGVVRKLA 77
Query: 78 TLVLSRIQ 85
+L ++
Sbjct: 78 VDLLGQLD 85
>gi|238793339|ref|ZP_04636965.1| Secretion system apparatus protein ssaS [Yersinia intermedia ATCC
29909]
gi|238727308|gb|EEQ18836.1| Secretion system apparatus protein ssaS [Yersinia intermedia ATCC
29909]
Length = 89
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 51/76 (67%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ A V+ +A +W +L S PV+ A +G++++ LQALTQIQ+ TL F+ K++AV
Sbjct: 1 MSNAIVVHLATQLLWIVLLLSMPVVVVASVVGLIVSLLQALTQIQDQTLQFLIKLLAVSA 60
Query: 61 TLIISAPFIGGQISSF 76
TL+I+ ++G + ++
Sbjct: 61 TLLITYHWMGATLLNY 76
>gi|225619291|ref|YP_002720517.1| flagellar biosynthetic protein FliQ [Brachyspira hyodysenteriae
WA1]
gi|296125239|ref|YP_003632491.1| flagellar biosynthetic protein FliQ [Brachyspira murdochii DSM
12563]
gi|225214110|gb|ACN82844.1| flagellar biosynthetic protein (fliQ) [Brachyspira hyodysenteriae
WA1]
gi|296017055|gb|ADG70292.1| flagellar biosynthetic protein FliQ [Brachyspira murdochii DSM
12563]
Length = 89
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 49/76 (64%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M++ ++ + + +W + SAPVL ++ +G++I+ LQA T IQE TLTFVPK+IA+
Sbjct: 1 MSDTSIIVLVQETLWVFMLLSAPVLGVSIIVGLIISILQATTSIQEQTLTFVPKMIAMLA 60
Query: 61 TLIISAPFIGGQISSF 76
+ + A ++ S+F
Sbjct: 61 VIYMLASWMLNYTSAF 76
>gi|227820526|ref|YP_002824497.1| type III secretion component, RhcS [Sinorhizobium fredii NGR234]
gi|227339525|gb|ACP23744.1| type III secretion component, RhcS [Sinorhizobium fredii NGR234]
Length = 89
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 49/78 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M++ L + AM T+L +SAP L A+ +G+ + +QALTQIQ+ TL K++AV +
Sbjct: 1 MDQTAFLAQMQKAMLTVLIASAPALAIAIVIGVSVGLIQALTQIQDQTLPQAVKLVAVML 60
Query: 61 TLIISAPFIGGQISSFVT 78
L++ P + Q+++F +
Sbjct: 61 ALVVLGPALAMQVANFAS 78
>gi|255021383|ref|ZP_05293431.1| Flagellar biosynthesis protein fliQ [Acidithiobacillus caldus
ATCC 51756]
gi|254969246|gb|EET26760.1| Flagellar biosynthesis protein fliQ [Acidithiobacillus caldus
ATCC 51756]
Length = 90
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 54/84 (64%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ + I++ A+WT L SAP+L A+ +G+L++ QA TQI E+TL+FVPK++A+ +
Sbjct: 1 MSPESIASISQHALWTALLLSAPLLGVALVVGVLVSVFQAATQINEMTLSFVPKVLAMAL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
LII P++ G I F + I
Sbjct: 61 VLIIGGPWMLGLIMHFTIQLFHNI 84
>gi|291519581|emb|CBK74802.1| flagellar biosynthetic protein FliQ [Butyrivibrio fibrisolvens
16/4]
Length = 89
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 52/78 (66%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M E VL+I R A++T+L +S P+L ++ +G+ I+ Q +T IQE TLTF+PKI+ VF
Sbjct: 1 MTEGQVLDIIRDAVYTLLITSLPLLLVSLIVGLAISIFQTVTSIQEQTLTFIPKIVGVFA 60
Query: 61 TLIISAPFIGGQISSFVT 78
L+ P++ ++ ++T
Sbjct: 61 ALLFFGPWMLTVLTEYIT 78
>gi|57434471|emb|CAI43888.1| EscS protein [Escherichia coli]
Length = 89
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 51/84 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +++ +W I S P + +A LGI+I+ +QA+TQ+Q+ TL F+ KIIAVF
Sbjct: 1 METGYFVQLCVQTLWIIFILSLPTVIAASVLGIIISLVQAITQLQDQTLPFLLKIIAVFA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
TL ++ ++G I +F +++ I
Sbjct: 61 TLALTYHWMGTTIINFSSIIFEMI 84
>gi|222112239|ref|YP_002554503.1| flagellar biosynthetic protein fliq [Acidovorax ebreus TPSY]
gi|221731683|gb|ACM34503.1| flagellar biosynthetic protein FliQ [Acidovorax ebreus TPSY]
Length = 89
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 48/86 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M VL + R A+ +L S PVL M +G+L++ QA+TQI E TL FVPK+IA +
Sbjct: 1 MTSQFVLTMGRDALTLLLMISMPVLGVVMAVGLLVSIFQAVTQIHEATLAFVPKLIAAVV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
I+ P++ + F+ + I S
Sbjct: 61 VFAIAGPWMLTTLVDFLRRTIEAIPS 86
>gi|114762162|ref|ZP_01441630.1| flagellar biosynthetic protein FliQ [Pelagibaca bermudensis
HTCC2601]
gi|114545186|gb|EAU48189.1| flagellar biosynthetic protein FliQ [Roseovarius sp. HTCC2601]
Length = 89
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 44/76 (57%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
++E + R +W +S P+L +A+ G+ + QALT +QE+TLTFVPK++A+ +
Sbjct: 2 LSETIFYDTLRQGLWVATITSVPILTAALLAGVGVGLFQALTSVQEMTLTFVPKLLAIVV 61
Query: 61 TLIISAPFIGGQISSF 76
+S F+ + F
Sbjct: 62 VFWMSMSFMSETLVGF 77
>gi|241763644|ref|ZP_04761694.1| flagellar biosynthetic protein FliQ [Acidovorax delafieldii 2AN]
gi|241367119|gb|EER61485.1| flagellar biosynthetic protein FliQ [Acidovorax delafieldii 2AN]
Length = 89
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 49/86 (56%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M VL + A+ +L + PVL M +G+L++ QA+TQIQE TL FVPK+IA +
Sbjct: 1 MTSQLVLTMGSEALTLLLMIAMPVLGVVMAVGLLVSIFQAVTQIQEATLAFVPKLIAAMV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
I+ P++ + ++ V+ I S
Sbjct: 61 VFAIAGPWMISTLVDYIRRVIESIPS 86
>gi|218549274|ref|YP_002383065.1| flagellar biosynthesis protein FliQ [Escherichia fergusonii ATCC
35469]
gi|218356815|emb|CAQ89443.1| flagellar biosynthesis protein [Escherichia fergusonii ATCC
35469]
gi|324114208|gb|EGC08181.1| flagellar biosynthetic protein FliQ [Escherichia fergusonii B253]
gi|325497691|gb|EGC95550.1| flagellar biosynthesis protein FliQ [Escherichia fergusonii
ECD227]
Length = 89
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 40/55 (72%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSRIQS 86
G++I+ LQA TQI E+TL+F+PKI+AVFI +I++ P++ + +V + S I S
Sbjct: 32 GLIISILQAATQINEMTLSFIPKIVAVFIAIIVAGPWMLSLLLDYVRTLFSNIPS 86
>gi|90415341|ref|ZP_01223275.1| Flagellar biosynthesis/type III secretory pathway protein [marine
gamma proteobacterium HTCC2207]
gi|90332664|gb|EAS47834.1| Flagellar biosynthesis/type III secretory pathway protein [marine
gamma proteobacterium HTCC2207]
Length = 89
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 53/86 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ A V+++ R A+W + ++P+L A+ +G+++ QA T IQE+TL+F+PK+ + +
Sbjct: 1 MDPALVIDLGREALWVAVMVASPLLGVALGVGLIVGIFQAATSIQEMTLSFIPKLGIMVL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
L+I + G + ++ + RI +
Sbjct: 61 ALLIFGSWQIGVMVDYIQRIYERIPA 86
>gi|284007638|emb|CBA73295.1| type III secretion protein EscS,SsaS,YscS [Arsenophonus nasoniae]
Length = 74
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 46/71 (64%)
Query: 14 MWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQI 73
+W +L S P++ A G+L++ LQALTQIQ+ TL F+ K++AV ITL +S ++G +
Sbjct: 2 LWIVLLLSLPIVIVASITGLLVSILQALTQIQDQTLQFLIKLVAVCITLAVSYHWMGSAL 61
Query: 74 SSFVTLVLSRI 84
++ L +I
Sbjct: 62 LNYAILSFDQI 72
>gi|83646793|ref|YP_435228.1| flagellar biosynthetic protein FliQ [Hahella chejuensis KCTC
2396]
gi|83634836|gb|ABC30803.1| flagellar biosynthetic protein FliQ [Hahella chejuensis KCTC
2396]
Length = 88
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 40/58 (68%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAV 58
MN + + +WT + +AP+L ++ +G++I+ LQ +TQIQE+TLTFVPKI AV
Sbjct: 1 MNADLAMMLTEDMLWTAVLVAAPILIVSLVVGLIISILQVVTQIQEMTLTFVPKIGAV 58
>gi|221069287|ref|ZP_03545392.1| flagellar biosynthetic protein FliQ [Comamonas testosteroni KF-1]
gi|264676605|ref|YP_003276511.1| flagellar biosynthetic protein FliQ [Comamonas testosteroni
CNB-2]
gi|299531250|ref|ZP_07044660.1| flagellar biosynthetic protein FliQ [Comamonas testosteroni S44]
gi|220714310|gb|EED69678.1| flagellar biosynthetic protein FliQ [Comamonas testosteroni KF-1]
gi|262207117|gb|ACY31215.1| flagellar biosynthetic protein FliQ [Comamonas testosteroni
CNB-2]
gi|298720657|gb|EFI61604.1| flagellar biosynthetic protein FliQ [Comamonas testosteroni S44]
Length = 89
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 48/88 (54%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M VL R A+ +L S PVL M +G+L++ QA+TQ+ E TL FVPK+IA +
Sbjct: 1 MTSQFVLTFGREALTLLLMISMPVLGVVMGVGLLVSVFQAVTQVHEATLAFVPKLIAAVL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
++ P++ + F+ + I S+
Sbjct: 61 VFAVAGPWMLSTLVDFIRRTIESIPGSV 88
>gi|294679033|ref|YP_003579648.1| flagellar biosynthetic protein FliQ [Rhodobacter capsulatus SB
1003]
gi|294477853|gb|ADE87241.1| flagellar biosynthetic protein FliQ [Rhodobacter capsulatus SB
1003]
Length = 88
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%)
Query: 11 RAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIG 70
R +W + SAP+L A+ G+ I QALT +QE+TLTFVPK+ A+ + +S F+
Sbjct: 11 REGLWIAVMISAPMLVVALVAGVAIGLFQALTSVQEMTLTFVPKVGAMLVVYWVSMSFMS 70
Query: 71 GQISSFVT 78
+ F T
Sbjct: 71 ETLVDFFT 78
>gi|152965633|ref|YP_001361417.1| export protein FliQ family 3 [Kineococcus radiotolerans SRS30216]
gi|151360150|gb|ABS03153.1| export protein FliQ family 3 [Kineococcus radiotolerans SRS30216]
Length = 92
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 52/88 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + V+ I A+ SAP+L +A+ +G I+ Q++TQ+QE T+ FVPK +AV I
Sbjct: 1 MTDVTVIHIGMTALVLAAKLSAPMLLTALAVGFGISLFQSVTQLQEQTIAFVPKAVAVGI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+++ ++ +++ F + + +I S L
Sbjct: 61 AIVVCGKWMLHELTGFTSTLYGQIPSLL 88
>gi|227873534|ref|ZP_03991779.1| flagellar biosynthesis protein FliQ [Oribacterium sinus F0268]
gi|227840624|gb|EEJ51009.1| flagellar biosynthesis protein FliQ [Oribacterium sinus F0268]
Length = 88
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
++ A++L+I L + P L +M LGI+IA QA T I E TLTFVPK+IA+ I
Sbjct: 2 LDSAEILDIMNQTFMLSLRIAMPFLLVSMILGIVIAIFQAATSINEQTLTFVPKLIAIII 61
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
L + + + F T+++ +
Sbjct: 62 MLTVLGGTLLKTMQDFFTMIMKMV 85
>gi|296274403|ref|YP_003657034.1| export protein FliQ family 3 [Arcobacter nitrofigilis DSM 7299]
gi|296098577|gb|ADG94527.1| export protein FliQ family 3 [Arcobacter nitrofigilis DSM 7299]
Length = 90
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 50/74 (67%)
Query: 3 EADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITL 62
D++ IA++ + IL + P L +M +G+LI+ QA+TQI + L+FVPK+I V I +
Sbjct: 2 NMDLMGIAQSTVKIILLLALPSLLVSMVIGLLISVFQAVTQISDAALSFVPKVIFVSIFI 61
Query: 63 IISAPFIGGQISSF 76
+IS P+IG +S++
Sbjct: 62 LISLPWIGDNVSTY 75
>gi|83647845|ref|YP_436280.1| flagellar biosynthesis protein FliQ [Hahella chejuensis KCTC
2396]
gi|83635888|gb|ABC31855.1| flagellar biosynthetic protein FliQ [Hahella chejuensis KCTC
2396]
Length = 89
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 53/86 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M VL+I R A+W I++ ++ ++ +G++++ QA TQI E TL+F+P+++ I
Sbjct: 1 MTPEVVLDIFREALWLIVTLVTLIVAPSLVVGLIVSIFQAATQINEQTLSFLPRLLVTLI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
+II+ P++ Q+ + ++++ I
Sbjct: 61 VIIIAGPWMLTQLMEYTDMLITSIPD 86
>gi|290475715|ref|YP_003468604.1| flagellar biosynthesis protein [Xenorhabdus bovienii SS-2004]
gi|289175037|emb|CBJ81840.1| flagellar biosynthesis [Xenorhabdus bovienii SS-2004]
Length = 89
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 42/55 (76%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSRIQS 86
G++I+ LQA TQI E+TL+F+PKI+AVF+T++I+ P++ + ++ ++ S I +
Sbjct: 32 GLVISLLQAATQINEMTLSFIPKILAVFVTIVIAGPWMLNLLLDYMRVLFSSIPT 86
>gi|283786651|ref|YP_003366516.1| T3SS structural protein EscS [Citrobacter rodentium ICC168]
gi|15723908|gb|AAL06355.1|AF311901_7 EscS [Citrobacter rodentium]
gi|282950105|emb|CBG89740.1| T3SS structural protein EscS [Citrobacter rodentium ICC168]
Length = 89
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 51/84 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +++ +W I S P + +A +GI+I+ +QA+TQ+Q+ TL F+ KIIAVF
Sbjct: 1 MGTGYFVQLCVQTLWIIFILSLPTVIAASVIGIIISLIQAITQLQDQTLPFLLKIIAVFA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
TL ++ ++G I +F +++ I
Sbjct: 61 TLALTYHWMGTTIINFSSIIFEMI 84
>gi|291285070|ref|YP_003501888.1| EscS [Escherichia coli O55:H7 str. CB9615]
gi|290764943|gb|ADD58904.1| EscS [Escherichia coli O55:H7 str. CB9615]
Length = 90
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 51/84 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ +++ W I S P + +A +GI+I+ +QA+TQ+Q+ TL F+ KIIAVF
Sbjct: 2 MDTGYFVQLCVQTFWIIFILSLPTVIAASVIGIIISLVQAITQLQDQTLPFLLKIIAVFA 61
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
TL ++ ++G I +F +++ I
Sbjct: 62 TLALTYHWMGTTIINFSSIIFEMI 85
>gi|148261122|ref|YP_001235249.1| export protein FliQ [Acidiphilium cryptum JF-5]
gi|326404523|ref|YP_004284605.1| flagellar biosynthetic protein FliQ [Acidiphilium multivorum
AIU301]
gi|146402803|gb|ABQ31330.1| export protein FliQ, family 3 [Acidiphilium cryptum JF-5]
gi|325051385|dbj|BAJ81723.1| flagellar biosynthetic protein FliQ [Acidiphilium multivorum
AIU301]
Length = 88
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 39/56 (69%)
Query: 21 SAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSF 76
SAP L +A+ G++I+ LQA+TQI E T+ F+PK+ AV TL+I F+ G +S F
Sbjct: 21 SAPPLLAALVAGVVISLLQAVTQINEATIVFLPKMAAVAGTLMIMGSFLLGTLSQF 76
>gi|260778659|ref|ZP_05887551.1| type III secretion protein YscS [Vibrio coralliilyticus ATCC
BAA-450]
gi|260604823|gb|EEX31118.1| type III secretion protein YscS [Vibrio coralliilyticus ATCC
BAA-450]
Length = 89
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 52/84 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEA ++ +W +L S PV+ A +GIL++ QALTQIQ+ +L F+ K++AV I
Sbjct: 1 MNEAVIIHFTSELLWLVLILSLPVVVVASAVGILVSLFQALTQIQDQSLQFLIKLVAVCI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
TL +S ++G + ++ L +I
Sbjct: 61 TLAVSYHWMGSTLLNYAGLAFDQI 84
>gi|15804243|ref|NP_290282.1| hypothetical protein Z5134 [Escherichia coli O157:H7 EDL933]
gi|15833836|ref|NP_312609.1| EscS [Escherichia coli O157:H7 str. Sakai]
gi|168748641|ref|ZP_02773663.1| EscS [Escherichia coli O157:H7 str. EC4113]
gi|168753532|ref|ZP_02778539.1| EscS [Escherichia coli O157:H7 str. EC4401]
gi|168766129|ref|ZP_02791136.1| EscS [Escherichia coli O157:H7 str. EC4486]
gi|168772322|ref|ZP_02797329.1| EscS [Escherichia coli O157:H7 str. EC4196]
gi|168785597|ref|ZP_02810604.1| EscS [Escherichia coli O157:H7 str. EC869]
gi|195936265|ref|ZP_03081647.1| EscS [Escherichia coli O157:H7 str. EC4024]
gi|208820696|ref|ZP_03261016.1| EscS [Escherichia coli O157:H7 str. EC4042]
gi|215488993|ref|YP_002331424.1| T3SS structure protein EscS [Escherichia coli O127:H6 str.
E2348/69]
gi|254795657|ref|YP_003080494.1| LEE-encoded type III secretion system factor [Escherichia coli
O157:H7 str. TW14359]
gi|260869700|ref|YP_003236102.1| T3SS structure protein EscS [Escherichia coli O111:H- str. 11128]
gi|261225801|ref|ZP_05940082.1| LEE-encoded type III secretion system factor [Escherichia coli
O157:H7 str. FRIK2000]
gi|261258846|ref|ZP_05951379.1| T3SS structure protein EscS [Escherichia coli O157:H7 str.
FRIK966]
gi|12518476|gb|AAG58846.1|AE005597_4 escS [Escherichia coli O157:H7 str. EDL933]
gi|2865277|gb|AAC38370.1| EscS [Escherichia coli]
gi|3414916|gb|AAC31527.1| L0048 [Escherichia coli]
gi|13364057|dbj|BAB38005.1| type III secretion system EscS protein [Escherichia coli O157:H7
str. Sakai]
gi|54311601|emb|CAG17516.1| EscS protein [Escherichia coli]
gi|187771589|gb|EDU35433.1| EscS [Escherichia coli O157:H7 str. EC4196]
gi|188016981|gb|EDU55103.1| EscS [Escherichia coli O157:H7 str. EC4113]
gi|189359091|gb|EDU77510.1| EscS [Escherichia coli O157:H7 str. EC4401]
gi|189364420|gb|EDU82839.1| EscS [Escherichia coli O157:H7 str. EC4486]
gi|189374337|gb|EDU92753.1| EscS [Escherichia coli O157:H7 str. EC869]
gi|195957533|gb|ACG59644.1| type III secretion system protein EscS [Escherichia coli O157:H7]
gi|195957592|gb|ACG59702.1| type III secretion system protein EscS [Escherichia coli]
gi|195957649|gb|ACG59758.1| EscS [Escherichia coli]
gi|208740819|gb|EDZ88501.1| EscS [Escherichia coli O157:H7 str. EC4042]
gi|215267065|emb|CAS11510.1| T3SS structure protein EscS [Escherichia coli O127:H6 str.
E2348/69]
gi|221361439|emb|CAX18592.1| Type III secretion system, LEE associated [Escherichia coli]
gi|221361496|emb|CAX18667.1| Type III secretion system, LEE associated [Escherichia coli]
gi|221361557|emb|CAX18747.1| Type III secretion system, LEE associated [Escherichia coli]
gi|254595057|gb|ACT74418.1| LEE-encoded type III secretion system factor [Escherichia coli
O157:H7 str. TW14359]
gi|255348330|gb|ACU09472.1| hypothetical protein [Escherichia coli]
gi|257766056|dbj|BAI37551.1| T3SS structure protein EscS [Escherichia coli O111:H- str. 11128]
gi|320639372|gb|EFX08987.1| EscS [Escherichia coli O157:H7 str. G5101]
gi|320644816|gb|EFX13852.1| EscS [Escherichia coli O157:H- str. 493-89]
gi|320650080|gb|EFX18576.1| EscS [Escherichia coli O157:H- str. H 2687]
gi|320655427|gb|EFX23362.1| EscS [Escherichia coli O55:H7 str. 3256-97 TW 07815]
gi|320661053|gb|EFX28489.1| EscS [Escherichia coli O55:H7 str. USDA 5905]
gi|320666179|gb|EFX33185.1| EscS [Escherichia coli O157:H7 str. LSU-61]
gi|323178896|gb|EFZ64472.1| type III secretion protein, HrpO family protein [Escherichia coli
1180]
Length = 89
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 51/84 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ +++ W I S P + +A +GI+I+ +QA+TQ+Q+ TL F+ KIIAVF
Sbjct: 1 MDTGYFVQLCVQTFWIIFILSLPTVIAASVIGIIISLVQAITQLQDQTLPFLLKIIAVFA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
TL ++ ++G I +F +++ I
Sbjct: 61 TLALTYHWMGTTIINFSSIIFEMI 84
>gi|85706169|ref|ZP_01037264.1| flagellar biosynthetic protein FliQ [Roseovarius sp. 217]
gi|85669333|gb|EAQ24199.1| flagellar biosynthetic protein FliQ [Roseovarius sp. 217]
Length = 89
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 42/69 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
+NE + R A+W + S P+L A+ G+++ QALT IQE+TLTFVPK+ A+ +
Sbjct: 2 LNEVLFFDTLREALWISVIISFPILTVALLAGLVVGLFQALTSIQELTLTFVPKLGAIIV 61
Query: 61 TLIISAPFI 69
++ F+
Sbjct: 62 VFWVTMGFM 70
>gi|42525571|ref|NP_970669.1| flagellar biosynthetic protein FliQ [Treponema denticola ATCC
35405]
gi|13122807|gb|AAK12643.1|AF232219_2 FliQ [Treponema denticola]
gi|41815582|gb|AAS10550.1| flagellar biosynthetic protein FliQ [Treponema denticola ATCC
35405]
gi|325475309|gb|EGC78494.1| FliQ [Treponema denticola F0402]
Length = 89
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 38/59 (64%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVF 59
M ++ + R + IL SAP+L +A+ +G+++A QA T IQE TLTFVPKI+ +
Sbjct: 1 MTTGTIVTLMREGIGIILMLSAPILVAALLVGLIVAIFQATTSIQEQTLTFVPKILTIL 59
>gi|58039959|ref|YP_191923.1| flagellar biosynthetic protein FliQ [Gluconobacter oxydans 621H]
gi|58002373|gb|AAW61267.1| Flagellar biosynthetic protein FliQ [Gluconobacter oxydans 621H]
Length = 90
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 46/76 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M D+ I L SAP L +A+ +G+L++ +QA+TQ+ E TL+FVPK++A+
Sbjct: 1 MQAIDLGAILEQTFLVALKLSAPALLTALGVGLLVSLVQAVTQLNEATLSFVPKVLAIGA 60
Query: 61 TLIISAPFIGGQISSF 76
++++ F+ + SF
Sbjct: 61 VMVMAGSFMTATLISF 76
>gi|237731997|ref|ZP_04562478.1| flagellar biosynthetic protein FliQ [Citrobacter sp. 30_2]
gi|226907536|gb|EEH93454.1| flagellar biosynthetic protein FliQ [Citrobacter sp. 30_2]
Length = 89
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 39/53 (73%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSRI 84
G++I+ LQA TQI E+TL+F+PKI+AVFI +I++ P++ + +V + S I
Sbjct: 32 GLIISILQAATQINEMTLSFIPKIVAVFIAIIVAGPWMLNLLLDYVRTLFSNI 84
>gi|315140249|gb|ADT81119.1| RscS [Pseudomonas fluorescens]
Length = 84
Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 46/69 (66%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
D L + + M ++ SAP L A+ +G+L + +QAL QIQ+ TL F K++AV +TL++
Sbjct: 2 DALTLFKEGMLLVVLLSAPPLIVAVIVGVLTSLVQALMQIQDQTLPFGIKLVAVGLTLLV 61
Query: 65 SAPFIGGQI 73
+ +IGG++
Sbjct: 62 TGRWIGGEL 70
>gi|170766904|ref|ZP_02901357.1| EscS protein [Escherichia albertii TW07627]
gi|170124342|gb|EDS93273.1| EscS protein [Escherichia albertii TW07627]
Length = 89
Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 51/84 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +++ +W I S P + +A +GI+I+ +QA+TQ+Q+ TL F+ KIIAVF
Sbjct: 1 METGYFVQLCVQTLWIIFILSLPTVIAASVIGIIISLIQAITQLQDQTLPFLLKIIAVFS 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
TL ++ ++G I +F +++ I
Sbjct: 61 TLALTYHWMGTTIINFSSIIFEMI 84
>gi|121596083|ref|YP_987979.1| flagellar biosynthetic protein FliQ [Acidovorax sp. JS42]
gi|120608163|gb|ABM43903.1| flagellar biosynthetic protein FliQ [Acidovorax sp. JS42]
Length = 89
Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 48/86 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M VL + R A+ +L + PVL M +G+L++ QA+TQI E TL FVPK+IA +
Sbjct: 1 MTSQFVLTMGRDALTLLLMIAMPVLGVVMAVGLLVSIFQAVTQIHEATLAFVPKLIAAVV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
I+ P++ + F+ + I S
Sbjct: 61 VFAIAGPWMLTTLVDFLRRTIEAIPS 86
>gi|95929865|ref|ZP_01312606.1| flagellar biosynthetic protein FliQ [Desulfuromonas acetoxidans
DSM 684]
gi|95134161|gb|EAT15819.1| flagellar biosynthetic protein FliQ [Desulfuromonas acetoxidans
DSM 684]
Length = 89
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 49/64 (76%)
Query: 6 VLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIIS 65
V+++ R A+ T+L S+P+L S + +G+L++ QA TQI E T+TF+PKI+AV ++LI+
Sbjct: 6 VIDLGRNAVKTVLLISSPMLLSGLIIGLLVSIFQAATQINEQTMTFIPKIVAVLVSLILF 65
Query: 66 APFI 69
AP+I
Sbjct: 66 APWI 69
>gi|193062068|ref|ZP_03043164.1| EscS protein [Escherichia coli E22]
gi|194426251|ref|ZP_03058806.1| EscS protein [Escherichia coli B171]
gi|260845711|ref|YP_003223489.1| T3SS structure protein EscS [Escherichia coli O103:H2 str. 12009]
gi|260858248|ref|YP_003232139.1| T3SS structure protein EscS [Escherichia coli O26:H11 str. 11368]
gi|13447702|gb|AAK26701.1|AF200363_9 EscS [Escherichia coli]
gi|18034506|gb|AAL57528.1|AF453441_12 EscS [Escherichia coli]
gi|17384636|emb|CAC81848.1| EscS protein [Escherichia coli]
gi|192932288|gb|EDV84886.1| EscS protein [Escherichia coli E22]
gi|194415559|gb|EDX31826.1| EscS protein [Escherichia coli B171]
gi|195183212|dbj|BAG66757.1| T3SS structure protein EscS [Escherichia coli O111:H-]
gi|254692326|emb|CAR47967.1| EscS protein [Escherichia coli]
gi|254692394|emb|CAR48037.1| EscS protein [Escherichia coli]
gi|257756897|dbj|BAI28399.1| T3SS structure protein EscS [Escherichia coli O26:H11 str. 11368]
gi|257760858|dbj|BAI32355.1| T3SS structure protein EscS [Escherichia coli O103:H2 str. 12009]
gi|323163023|gb|EFZ48856.1| type III secretion protein, HrpO family protein [Escherichia coli
E128010]
Length = 89
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 51/84 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +++ +W I S P + +A +GI+I+ +QA+TQ+Q+ TL F+ KIIAVF
Sbjct: 1 METGYFVQLCVQTLWIIFILSLPTVIAASVVGIIISLVQAITQLQDQTLPFLLKIIAVFA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
TL ++ ++G I +F +++ I
Sbjct: 61 TLALTYHWMGTTIINFSSIIFEMI 84
>gi|260886650|ref|ZP_05897913.1| flagellar biosynthetic protein FliQ [Selenomonas sputigena ATCC
35185]
gi|330839519|ref|YP_004414099.1| flagellar biosynthetic protein FliQ [Selenomonas sputigena ATCC
35185]
gi|260863793|gb|EEX78293.1| flagellar biosynthetic protein FliQ [Selenomonas sputigena ATCC
35185]
gi|329747283|gb|AEC00640.1| flagellar biosynthetic protein FliQ [Selenomonas sputigena ATCC
35185]
Length = 89
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 48/69 (69%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ +++I + A+W +L SAP+L + +G+L++ QA T IQE TL F+PKIIAVF+
Sbjct: 1 MSSDLIIQIGQNALWIVLLVSAPMLGLGLAVGLLVSVFQATTSIQEATLAFIPKIIAVFV 60
Query: 61 TLIISAPFI 69
++I P++
Sbjct: 61 AILIFGPWM 69
>gi|51598534|ref|YP_072722.1| flagellar biosynthesis protein [Borrelia garinii PBi]
gi|51573105|gb|AAU07130.1| flagellar biosynthesis protein [Borrelia garinii PBi]
Length = 87
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 57/86 (66%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +L + R ++ I+ SAP+L A+ +G+LI+ QA+T IQ+ TL+F+PKII + +
Sbjct: 1 MTAGHILYLIRISIENIMILSAPMLIIALIVGLLISIFQAITSIQDQTLSFIPKIIVILL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
T++I P+I ++ F ++ +++Q+
Sbjct: 61 TIVIFGPWILNKLMQFTYMIFNQLQN 86
>gi|328496286|gb|AEB21290.1| FliQ [Yersinia ruckeri]
Length = 89
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 33/38 (86%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
G+L++ LQA TQI E+TL+F+PKI+AVF T++I+ P++
Sbjct: 32 GLLVSLLQAATQINEMTLSFIPKILAVFATMVIAGPWM 69
>gi|238755316|ref|ZP_04616659.1| Flagellar biosynthetic protein FliQ [Yersinia ruckeri ATCC 29473]
gi|238706452|gb|EEP98826.1| Flagellar biosynthetic protein FliQ [Yersinia ruckeri ATCC 29473]
Length = 83
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 33/38 (86%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
G+L++ LQA TQI E+TL+F+PKI+AVF T++I+ P++
Sbjct: 26 GLLVSLLQAATQINEMTLSFIPKILAVFATMVIAGPWM 63
>gi|51587311|emb|CAE53688.1| putative HrcS [Pseudomonas fluorescens bv. III]
gi|321399618|emb|CBJ44629.1| putative type III secretion system protein HrcS [Pseudomonas sp.
MTE-48-102]
gi|321399622|emb|CBJ44632.1| putative type III secretion system protein HrcS [Pseudomonas sp.
MTE-48-104]
gi|321399642|emb|CBJ44647.1| putative type III secretion system protein HrcS [Pseudomonas sp.
MTR-25-521]
gi|321399666|emb|CBJ44665.1| putative type III secretion system protein HrcS [Pseudomonas sp.
MTR-J5-621]
gi|321399670|emb|CBJ44668.1| putative type III secretion system protein HrcS [Pseudomonas sp.
MTR-J5-622]
gi|321399674|emb|CBJ44671.1| putative type III secretion system protein HrcS [Pseudomonas sp.
MTR-J5-623]
Length = 84
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 46/69 (66%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
D L + + M ++ SAP L A+ +G+L + +QAL QIQ+ TL F K++AV +TL++
Sbjct: 2 DALTLFKEGMLLVVLLSAPPLIVAVIVGVLTSLVQALMQIQDQTLPFGIKLVAVGLTLLV 61
Query: 65 SAPFIGGQI 73
+ +IGG++
Sbjct: 62 TGRWIGGEL 70
>gi|294500923|ref|YP_003564623.1| flagellar biosynthetic protein FliQ [Bacillus megaterium QM
B1551]
gi|294350860|gb|ADE71189.1| flagellar biosynthetic protein FliQ [Bacillus megaterium QM
B1551]
Length = 89
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 53/84 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN V+ +A ++TIL S P+L A+ +G++I+ QA TQIQE TL FVPKI+AV +
Sbjct: 1 MNGEFVISLAEKGVYTILIVSGPLLLLALVIGLIISIFQATTQIQEQTLAFVPKIVAVLV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
++ P++ ++ SF + S +
Sbjct: 61 GIVFFGPWMLSKMISFTYEIFSNL 84
>gi|149203127|ref|ZP_01880098.1| export protein FliQ, family 3 [Roseovarius sp. TM1035]
gi|149143673|gb|EDM31709.1| export protein FliQ, family 3 [Roseovarius sp. TM1035]
Length = 89
Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 45/76 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
+NE + R ++W + S P+L A+ G+++ QALT IQE+TLTFVPK+ A+ +
Sbjct: 2 LNEVLFFDTLRESLWISVIISFPILAVALLAGLVVGLFQALTSIQELTLTFVPKLGAIIV 61
Query: 61 TLIISAPFIGGQISSF 76
I+ F+ + +F
Sbjct: 62 VFWITMGFMTQTLVTF 77
>gi|195953031|ref|YP_002121321.1| flagellar biosynthetic protein FliQ [Hydrogenobaculum sp.
Y04AAS1]
gi|195932643|gb|ACG57343.1| flagellar biosynthetic protein FliQ [Hydrogenobaculum sp.
Y04AAS1]
Length = 89
Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 40/59 (67%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVF 59
M++ VL I + + SAP+L + +G+LI+ LQ+ TQIQE+TL+++PKI+A F
Sbjct: 1 MSQDQVLTITENMLKMTVLLSAPILLTTFIVGLLISILQSATQIQEMTLSYIPKILAAF 59
>gi|319790412|ref|YP_004152045.1| flagellar biosynthetic protein FliQ [Thermovibrio ammonificans
HB-1]
gi|317114914|gb|ADU97404.1| flagellar biosynthetic protein FliQ [Thermovibrio ammonificans
HB-1]
Length = 89
Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 39/64 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M ++ + R + L APVL F+GI I+ LQA TQI E+TLTF+PKI+A F+
Sbjct: 1 MTVEQIIFLGRQMLEVALLVGAPVLLITFFVGIAISVLQAATQIHEMTLTFIPKILAAFV 60
Query: 61 TLII 64
+ I
Sbjct: 61 AIFI 64
>gi|300722651|ref|YP_003711941.1| flagellar biosynthesis protein [Xenorhabdus nematophila ATCC
19061]
gi|297629158|emb|CBJ89754.1| flagellar biosynthesis [Xenorhabdus nematophila ATCC 19061]
Length = 89
Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 34/38 (89%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
G++I+ LQA TQ+ E+TL+F+PKI+AVF+T++I+ P++
Sbjct: 32 GLIISLLQAATQVNEMTLSFIPKILAVFVTIVIAGPWM 69
>gi|296534148|ref|ZP_06896644.1| flagellar biosynthetic protein FliQ [Roseomonas cervicalis ATCC
49957]
gi|296265524|gb|EFH11653.1| flagellar biosynthetic protein FliQ [Roseomonas cervicalis ATCC
49957]
Length = 92
Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Query: 1 MNEADVLEIA-RAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPK 54
M E+DV+ +A + A+WT L P+L + +G++IA LQALTQ+QE L FVPK
Sbjct: 1 MVESDVIALAGQQALWTALLVGGPLLGILLAVGLVIAILQALTQVQEAALAFVPK 55
>gi|149928151|ref|ZP_01916397.1| flagellar biosynthetic protein FliQ [Limnobacter sp. MED105]
gi|149823136|gb|EDM82374.1| flagellar biosynthetic protein FliQ [Limnobacter sp. MED105]
Length = 89
Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 49/69 (71%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN VL + ++A+ +L S P+L A+ +G+L++ LQA TQI E+TL+F+PKI+ +F
Sbjct: 1 MNSQTVLNLGQSALEVMLMVSGPLLVVALVVGLLVSILQAATQINEMTLSFIPKILGIFA 60
Query: 61 TLIISAPFI 69
TL++ P++
Sbjct: 61 TLLLLGPWM 69
>gi|307293815|ref|ZP_07573659.1| flagellar biosynthetic protein FliQ [Sphingobium chlorophenolicum
L-1]
gi|306879966|gb|EFN11183.1| flagellar biosynthetic protein FliQ [Sphingobium chlorophenolicum
L-1]
Length = 90
Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 1 MNEADV-LEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVF 59
M AD + +A+ A+W ++AP+L A+ G+LI +QA T I E TL F+PKII V
Sbjct: 1 MENADFFMGLAQQALWITALAAAPILIPALVAGVLIGMVQAATSINEQTLAFIPKIIVVG 60
Query: 60 ITLIISAPFIGGQISSFVTLVLSRIQSSL 88
L++ I I+ F + RI L
Sbjct: 61 AMLVLFGGSIMVLIADFTREIFERIPDLL 89
>gi|301165897|emb|CBW25470.1| flagellar biosynthetic protein FliQ [Bacteriovorax marinus SJ]
Length = 91
Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 46/69 (66%)
Query: 8 EIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAP 67
+I A+ L ++P+L ++ +GIL++ QA+TQI E TL+F+PKI+ + L+I AP
Sbjct: 8 DITNNAVKIALMIASPMLVGSLVMGILVSIFQAVTQINEQTLSFIPKILVIVGALVIFAP 67
Query: 68 FIGGQISSF 76
++ +++F
Sbjct: 68 WMSDTLTTF 76
>gi|299068761|emb|CBJ40001.1| FliQ: flagellar biosynthesis protein. fliQ/mopD/spaQ family
[Ralstonia solanacearum CMR15]
Length = 89
Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 53/81 (65%)
Query: 6 VLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIIS 65
VL +AR AM + AP+L ++ +G+L+A QA TQ+ E TL+F+PK++AV T+I++
Sbjct: 6 VLNMARQAMQVAMMVGAPMLLVSLVVGLLVAVFQAATQLNEQTLSFIPKLLAVAATMILA 65
Query: 66 APFIGGQISSFVTLVLSRIQS 86
P++ G I + VL+ I +
Sbjct: 66 GPWVLGVIVDYTRDVLTNIPN 86
>gi|320107034|ref|YP_004182624.1| export protein FliQ family 3 [Terriglobus saanensis SP1PR4]
gi|319925555|gb|ADV82630.1| export protein FliQ family 3 [Terriglobus saanensis SP1PR4]
Length = 89
Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 43/68 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN V EIAR + + SAPVL ++ + ++++ LQ LT IQ+ TLT VP+++ VF+
Sbjct: 1 MNPDQVAEIARHLLMEAMLLSAPVLIASCLVSVILSLLQTLTSIQDQTLTAVPRLLVVFV 60
Query: 61 TLIISAPF 68
++ P+
Sbjct: 61 AGTLTMPW 68
>gi|238782831|ref|ZP_04626860.1| Flagellar biosynthetic protein fliQ [Yersinia bercovieri ATCC
43970]
gi|238716254|gb|EEQ08237.1| Flagellar biosynthetic protein fliQ [Yersinia bercovieri ATCC
43970]
Length = 89
Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 45/69 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + A+ L +AP+LF+A+F G++++ LQA TQI E+TL+F+PKI+ +
Sbjct: 1 MTPESVMAMGFQAIKVGLMIAAPLLFAALFTGLIVSVLQASTQINEMTLSFIPKILVIIA 60
Query: 61 TLIISAPFI 69
II P++
Sbjct: 61 VGIILGPWM 69
>gi|189023202|ref|YP_001932943.1| Flagellar biosynthesis protein FliQ [Brucella abortus S19]
gi|306840130|ref|ZP_07472915.1| flagellar biosynthesis protein FliQ [Brucella sp. NF 2653]
gi|189021776|gb|ACD74497.1| Flagellar biosynthesis protein FliQ [Brucella abortus S19]
gi|306404775|gb|EFM61069.1| flagellar biosynthesis protein FliQ [Brucella sp. NF 2653]
Length = 42
Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 30/41 (73%)
Query: 48 TLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSRIQSSL 88
TLTFVPKII +F+ L ++APF+G QI++F L SRI+
Sbjct: 2 TLTFVPKIIVIFVVLALTAPFVGAQINAFTLLAYSRIEKGF 42
>gi|157145257|ref|YP_001452576.1| flagellar biosynthesis protein FliQ [Citrobacter koseri ATCC
BAA-895]
gi|157082462|gb|ABV12140.1| hypothetical protein CKO_00994 [Citrobacter koseri ATCC BAA-895]
Length = 89
Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 54/84 (64%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ I AM L+ +AP+L A+F G++I+ LQA TQI E+TL+F+PKI+AVF
Sbjct: 1 MTPESVMMIGTEAMKVALALAAPLLLVALFTGLIISILQAATQINEMTLSFIPKIVAVFT 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
+I++ P++ + +V + S +
Sbjct: 61 AIIVAGPWMLNLLLDYVRTLFSNL 84
>gi|27904582|ref|NP_777708.1| flagellar biosynthetic protein FliQ [Buchnera aphidicola str. Bp
(Baizongia pistaciae)]
gi|38372221|sp|Q89AZ1|FLIQ_BUCBP RecName: Full=Flagellar biosynthetic protein FliQ
gi|27903979|gb|AAO26813.1| flagellar biosynthetic protein FliQ [Buchnera aphidicola str. Bp
(Baizongia pistaciae)]
Length = 90
Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 43/69 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + AM L S P+L SA+ G++++ QA TQI E TL+F+PKI AV +
Sbjct: 1 MTIESVMSLFYDAMKVTLMISLPLLLSALCCGLIVSIFQAATQINEQTLSFIPKIAAVLV 60
Query: 61 TLIISAPFI 69
+++I P++
Sbjct: 61 SIVIFGPWM 69
>gi|283832656|ref|ZP_06352397.1| flagellar biosynthetic protein FliQ [Citrobacter youngae ATCC
29220]
gi|291072330|gb|EFE10439.1| flagellar biosynthetic protein FliQ [Citrobacter youngae ATCC
29220]
Length = 83
Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 39/53 (73%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSRI 84
G++I+ LQA TQI E+TL+F+PKI+AVFI +I++ P++ + +V + S +
Sbjct: 26 GLIISILQAATQINEMTLSFIPKIVAVFIAIIVAGPWMLNLLLDYVRTLFSNL 78
>gi|160939625|ref|ZP_02086973.1| hypothetical protein CLOBOL_04517 [Clostridium bolteae ATCC
BAA-613]
gi|158437416|gb|EDP15180.1| hypothetical protein CLOBOL_04517 [Clostridium bolteae ATCC
BAA-613]
Length = 87
Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 46/77 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ V+EI + AM + P+L ++ +G+L+A QA TQI E TLTFVPK+I + +
Sbjct: 1 MSAEQVMEIMKEAMLVAFEIAGPLLIISIAVGLLVAIFQAATQIHEQTLTFVPKLIVIAL 60
Query: 61 TLIISAPFIGGQISSFV 77
L+ ++ ++ FV
Sbjct: 61 VLLALGSWMSKVMNEFV 77
>gi|254486554|ref|ZP_05099759.1| flagellar biosynthetic protein FliQ [Roseobacter sp. GAI101]
gi|214043423|gb|EEB84061.1| flagellar biosynthetic protein FliQ [Roseobacter sp. GAI101]
Length = 89
Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
++E + R +W L S P+L A+ G+ I +QALT IQE+TLTFVPK+ +
Sbjct: 2 IDEVIFYDTLRQGLWVALIISVPILTVALITGVTIGLVQALTSIQEMTLTFVPKLAGIGA 61
Query: 61 TLIISAPFIGGQISSF 76
+S F+ + SF
Sbjct: 62 VFWVSMSFMTETLVSF 77
>gi|213025464|ref|ZP_03339911.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Typhi str. 404ty]
Length = 82
Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 39/53 (73%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSRI 84
G++I+ LQA TQI E+TL+F+PKI+AVFI +I++ P++ + +V + S +
Sbjct: 25 GLIISILQAATQINEMTLSFIPKIVAVFIAIIVAGPWMLNLLLDYVRTLFSNL 77
>gi|123442775|ref|YP_001006752.1| flagellar biosynthesis protein FliQ [Yersinia enterocolitica
subsp. enterocolitica 8081]
gi|332161331|ref|YP_004297908.1| flagellar biosynthesis protein FliQ [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|122089736|emb|CAL12589.1| flagellar biosynthetic protein FliQ [Yersinia enterocolitica
subsp. enterocolitica 8081]
gi|318605252|emb|CBY26750.1| flagellar biosynthesis protein FliQ [Yersinia enterocolitica
subsp. palearctica Y11]
gi|325665561|gb|ADZ42205.1| flagellar biosynthesis protein FliQ [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|330861095|emb|CBX71362.1| flagellar biosynthetic protein fliQ [Yersinia enterocolitica
W22703]
Length = 89
Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 33/38 (86%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
G++++ LQA TQI E+TL+F+PKI+AVF TL+I+ P++
Sbjct: 32 GLIVSLLQAATQINEMTLSFIPKILAVFATLVIAGPWM 69
>gi|16760924|ref|NP_456541.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|16765318|ref|NP_460933.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|29141384|ref|NP_804726.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|56413107|ref|YP_150182.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|62180555|ref|YP_216972.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|161502898|ref|YP_001570010.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|161613451|ref|YP_001587416.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|167552787|ref|ZP_02346538.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|167993555|ref|ZP_02574649.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|168234153|ref|ZP_02659211.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|168239220|ref|ZP_02664278.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|168244831|ref|ZP_02669763.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|168462478|ref|ZP_02696409.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|168823023|ref|ZP_02835023.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|194449608|ref|YP_002046031.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194472466|ref|ZP_03078450.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194735991|ref|YP_002115014.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|197251669|ref|YP_002146043.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197263534|ref|ZP_03163608.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|197362033|ref|YP_002141670.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|198244495|ref|YP_002215106.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|200390543|ref|ZP_03217154.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|204931093|ref|ZP_03221919.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|207856507|ref|YP_002243158.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|213163375|ref|ZP_03349085.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Typhi str. E00-7866]
gi|213417181|ref|ZP_03350325.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Typhi str. E01-6750]
gi|213424994|ref|ZP_03357744.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Typhi str. E02-1180]
gi|213584780|ref|ZP_03366606.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
gi|213612734|ref|ZP_03370560.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
gi|213650742|ref|ZP_03380795.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
gi|213855267|ref|ZP_03383507.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
gi|238912447|ref|ZP_04656284.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
gi|289829472|ref|ZP_06547084.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Typhi str. E98-3139]
gi|61224040|sp|P0A1L5|FLIQ_SALTY RecName: Full=Flagellar biosynthetic protein FliQ
gi|61224042|sp|P0A1L6|FLIQ_SALTI RecName: Full=Flagellar biosynthetic protein FliQ
gi|25303008|pir||AE0753 flagellar biosynthetic protein FliQ [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|1066864|gb|AAB81320.1| fliQ [Salmonella enterica subsp. enterica serovar Typhimurium]
gi|16420515|gb|AAL20892.1| flagellar biosynthesis protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|16503221|emb|CAD05728.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Typhi]
gi|29137011|gb|AAO68575.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|56127364|gb|AAV76870.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|62128188|gb|AAX65891.1| flagellar biosynthesis [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|160864245|gb|ABX20868.1| hypothetical protein SARI_00957 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
gi|161362815|gb|ABX66583.1| hypothetical protein SPAB_01168 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194407912|gb|ACF68131.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194458830|gb|EDX47669.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194711493|gb|ACF90714.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|195634231|gb|EDX52583.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|197093510|emb|CAR58971.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|197215372|gb|ACH52769.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197241789|gb|EDY24409.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|197288043|gb|EDY27430.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|197939011|gb|ACH76344.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|199602988|gb|EDZ01534.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|204320137|gb|EDZ05342.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|205322628|gb|EDZ10467.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|205328382|gb|EDZ15146.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205331874|gb|EDZ18638.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|205336377|gb|EDZ23141.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|205340674|gb|EDZ27438.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|206708310|emb|CAR32613.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|261247146|emb|CBG24969.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. D23580]
gi|267993969|gb|ACY88854.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|301158494|emb|CBW18004.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|312912970|dbj|BAJ36944.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|321224625|gb|EFX49688.1| Flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|322616973|gb|EFY13881.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|322618212|gb|EFY15104.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|322625883|gb|EFY22702.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|322626335|gb|EFY23145.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|322632750|gb|EFY29495.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|322639092|gb|EFY35785.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|322640408|gb|EFY37064.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322647231|gb|EFY43730.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|322649921|gb|EFY46342.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|322655529|gb|EFY51837.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|322662988|gb|EFY59195.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|322668173|gb|EFY64332.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|322674068|gb|EFY70162.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|322675580|gb|EFY71654.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|322683009|gb|EFY79025.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|322686703|gb|EFY82681.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|322715031|gb|EFZ06602.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Choleraesuis str. A50]
gi|323130259|gb|ADX17689.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. 4/74]
gi|323198063|gb|EFZ83180.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|323204465|gb|EFZ89471.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|323207555|gb|EFZ92503.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|323211006|gb|EFZ95866.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|323220727|gb|EGA05171.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|323226686|gb|EGA10883.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|323231562|gb|EGA15675.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|323236005|gb|EGA20084.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|323240575|gb|EGA24618.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|323245467|gb|EGA29467.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|323247585|gb|EGA31536.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323255520|gb|EGA39281.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|323262118|gb|EGA45681.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|323266241|gb|EGA49731.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|323270650|gb|EGA54091.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
gi|326622854|gb|EGE29199.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Dublin str. 3246]
gi|332988869|gb|AEF07852.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
Length = 89
Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 39/53 (73%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSRI 84
G++I+ LQA TQI E+TL+F+PKI+AVFI +I++ P++ + +V + S +
Sbjct: 32 GLIISILQAATQINEMTLSFIPKIVAVFIAIIVAGPWMLNLLLDYVRTLFSNL 84
>gi|149377874|ref|ZP_01895603.1| flagellar biosynthetic protein FliQ [Marinobacter algicola DG893]
gi|149357816|gb|EDM46309.1| flagellar biosynthetic protein FliQ [Marinobacter algicola DG893]
Length = 89
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 48/73 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V++I R A+W I+ ++ ++ + +G++++ QA TQI E TL+F+P+++ I
Sbjct: 1 MTPETVIDILREALWMIVLLASLIIGPGLVIGLVVSTFQAATQINEQTLSFLPRLLVTLI 60
Query: 61 TLIISAPFIGGQI 73
T+I++ P++ Q+
Sbjct: 61 TIIVAGPWMLTQL 73
>gi|118581841|ref|YP_903091.1| flagellar biosynthetic protein FliQ [Pelobacter propionicus DSM
2379]
gi|118504551|gb|ABL01034.1| flagellar biosynthetic protein FliQ [Pelobacter propionicus DSM
2379]
Length = 89
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+++AR + L SAP+L ++ +G+LI+ QA+T I E TL F PKI+AV +
Sbjct: 1 MTPELVIQLARRSFEATLLLSAPLLIFSLAVGLLISIFQAVTSINEATLAFAPKIVAVMV 60
Query: 61 TLIISAPFIGGQISSFVTLVLS 82
++I P++ + F + S
Sbjct: 61 AMVIFFPWMMTYMCDFTREIYS 82
>gi|284007165|emb|CBA72449.1| flagellar biosynthesis protein FliQ [Arsenophonus nasoniae]
Length = 84
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 33/38 (86%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
G++I+ LQA TQI E+TL+F+PKIIAVFIT +++ P++
Sbjct: 27 GLIISLLQAATQINEMTLSFIPKIIAVFITAVVAGPWM 64
>gi|87307409|ref|ZP_01089554.1| probable flagellar biosynthetic protein fliQ [Blastopirellula
marina DSM 3645]
gi|87290149|gb|EAQ82038.1| probable flagellar biosynthetic protein fliQ [Blastopirellula
marina DSM 3645]
Length = 91
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 51/88 (57%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ +++ R AM L +AP L + M +G+ I LQALTQIQ+ T+ FVPK +A+
Sbjct: 1 MDVTTTVDLTREAMMVALWIAAPALVTGMLVGLAIGLLQALTQIQDQTVAFVPKFLAMAA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
++ + P++ ++ + +++ I L
Sbjct: 61 AMLFALPWVLQRLMVYTETLVTHIPDRL 88
>gi|238764401|ref|ZP_04625351.1| Flagellar biosynthetic protein FliQ [Yersinia kristensenii ATCC
33638]
gi|238697427|gb|EEP90194.1| Flagellar biosynthetic protein FliQ [Yersinia kristensenii ATCC
33638]
Length = 89
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 33/38 (86%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
G++++ LQA TQI E+TL+F+PKI+AVF TL+I+ P++
Sbjct: 32 GLIVSLLQAATQINEMTLSFIPKILAVFATLVIAGPWM 69
>gi|153003616|ref|YP_001377941.1| export protein FliQ [Anaeromyxobacter sp. Fw109-5]
gi|152027189|gb|ABS24957.1| export protein FliQ family 3 [Anaeromyxobacter sp. Fw109-5]
Length = 88
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ A +L + R A+ +L SAP L +A+ +G++ LQA TQIQE T+ VP++ AV +
Sbjct: 1 MDPA-LLHVGREALLVVLVVSAPPLLAALAVGLVTGVLQAATQIQEPTVGVVPRLGAVLV 59
Query: 61 TLIISAPFIGGQISSFVTLVLS 82
L ++AP+IG +++ L
Sbjct: 60 ALAVAAPWIGARVAQLARTCLD 81
>gi|110677661|ref|YP_680668.1| flagellar biosynthetic protein FliQ [Roseobacter denitrificans
OCh 114]
gi|163733141|ref|ZP_02140585.1| flagellar biosynthetic protein FliQ [Roseobacter litoralis Och
149]
gi|109453777|gb|ABG29982.1| flagellar biosynthetic protein FliQ [Roseobacter denitrificans
OCh 114]
gi|161393676|gb|EDQ18001.1| flagellar biosynthetic protein FliQ [Roseobacter litoralis Och
149]
Length = 89
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 41/66 (62%)
Query: 11 RAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIG 70
R +W + S PVL +A+ G+ I +QALT IQE+TLTFVPK+ A+ + +S F+
Sbjct: 12 RHGLWIAVLISIPVLTAALVTGVSIGLVQALTSIQEMTLTFVPKLAAIVLVFWMSMGFMT 71
Query: 71 GQISSF 76
+ SF
Sbjct: 72 QTLVSF 77
>gi|163856447|ref|YP_001630745.1| flagellar biosynthesis protein FliQ [Bordetella petrii DSM 12804]
gi|163260175|emb|CAP42477.1| flagellar biosynthesis protein FliQ [Bordetella petrii]
Length = 89
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 52/84 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + A+ L+ + P+L + +G++IA QA TQI E+TL+F+PK++A+
Sbjct: 1 MTAETVMSMTYQALKIALAMAGPLLLVTLAVGLVIAVFQAATQINEMTLSFIPKLLAMCG 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
L++ P++ G ++ ++ ++ +I
Sbjct: 61 VLVLMGPWLLGLMTDYIRQLIGQI 84
>gi|329901846|ref|ZP_08272934.1| type III secretion protein [Oxalobacteraceae bacterium IMCC9480]
gi|327548983|gb|EGF33599.1| type III secretion protein [Oxalobacteraceae bacterium IMCC9480]
Length = 87
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 43/70 (61%)
Query: 4 ADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLI 63
AD + + +W I+ SAP L A+ G I+ +QA+TQIQ+ TL +V K++ V ITL
Sbjct: 2 ADTINFFQQGLWMIILLSAPPLLVAVLCGTAISLIQAVTQIQDQTLPYVVKLMGVSITLT 61
Query: 64 ISAPFIGGQI 73
+ +IG ++
Sbjct: 62 LMGRWIGSEL 71
>gi|224583521|ref|YP_002637319.1| flagellar biosynthesis protein [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|224468048|gb|ACN45878.1| flagellar biosynthesis protein [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|322660307|gb|EFY56545.1| flagellar biosynthesis protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|323195409|gb|EFZ80589.1| flagellar biosynthesis protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|323217540|gb|EGA02259.1| flagellar biosynthesis protein [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|323253952|gb|EGA37776.1| flagellar biosynthesis protein [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
Length = 83
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 39/53 (73%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSRI 84
G++I+ LQA TQI E+TL+F+PKI+AVFI +I++ P++ + +V + S +
Sbjct: 26 GLIISILQAATQINEMTLSFIPKIVAVFIAIIVAGPWMLNLLLDYVRTLFSNL 78
>gi|15895418|ref|NP_348767.1| flagellar biosynthesis protein FliQ [Clostridium acetobutylicum
ATCC 824]
gi|15025141|gb|AAK80107.1|AE007715_12 Flagellar biosynthesis protein FliQ [Clostridium acetobutylicum
ATCC 824]
gi|325509564|gb|ADZ21200.1| Flagellar biosynthesis protein FliQ [Clostridium acetobutylicum
EA 2018]
Length = 89
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 42/58 (72%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAV 58
M+E +++I + A+ T L SAP+L ++ +G+ I+ QA TQIQE TLTF+PK++A+
Sbjct: 1 MSENMIIKIMKDAITTGLIVSAPMLIVSIIIGLFISIFQATTQIQEQTLTFLPKLLAI 58
>gi|26991043|ref|NP_746468.1| flagellar biosynthesis protein FliQ [Pseudomonas putida KT2440]
gi|24986075|gb|AAN69932.1|AE016632_3 flagellar biosynthetic protein FliQ [Pseudomonas putida KT2440]
Length = 89
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 49/77 (63%)
Query: 8 EIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAP 67
++ R A+W A ++ ++ +G+++A QA TQI E TL+F+P+++ + ITLII+ P
Sbjct: 8 DLFRDALWLTTLMVAVLVVPSLLVGLVVAMFQAATQINEQTLSFLPRLLVMLITLIIAGP 67
Query: 68 FIGGQISSFVTLVLSRI 84
++ + ++T + + I
Sbjct: 68 WLVQKFMEYITTLYTNI 84
>gi|115379094|ref|ZP_01466218.1| flagellar biosynthetic protein FliQ [Stigmatella aurantiaca
DW4/3-1]
gi|310823553|ref|YP_003955911.1| export protein fliq, family 3 [Stigmatella aurantiaca DW4/3-1]
gi|115363877|gb|EAU62988.1| flagellar biosynthetic protein FliQ [Stigmatella aurantiaca
DW4/3-1]
gi|309396625|gb|ADO74084.1| export protein FliQ, family 3 [Stigmatella aurantiaca DW4/3-1]
Length = 89
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 53/84 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + +L + R A+ ++ +S P + +++ +G L++ QA TQ+QE TL+ VPK+ A +
Sbjct: 1 MTQDLLLAVGREALLLMVLASLPPVGASLVVGFLMSLFQATTQLQESTLSVVPKLGASVL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
L+++ P+I Q++ F +L+ I
Sbjct: 61 ALVLAGPWIAAQLTLFTRQLLTLI 84
>gi|5921673|gb|AAD56297.1| FliQ [Pseudomonas putida]
Length = 89
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 51/84 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +++ R+A+W A ++ ++ +G+L+A QA TQI E TL+F+P+++ + I
Sbjct: 1 MTPEVAVDLFRSALWLTTLMVAVLVVPSLLVGLLVAIFQAATQINEQTLSFLPRLLVMLI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
TLI+ P++ + ++T + S I
Sbjct: 61 TLIVGGPWLVQKFMEYMTGLYSSI 84
>gi|332981450|ref|YP_004462891.1| flagellar biosynthetic protein FliQ [Mahella australiensis 50-1
BON]
gi|332699128|gb|AEE96069.1| flagellar biosynthetic protein FliQ [Mahella australiensis 50-1
BON]
Length = 89
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 53/86 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M++A VL I R A++ ++ SAP+ + +GI+++ QA+TQI E TL F+PKIIA+ +
Sbjct: 1 MSQAQVLSIVRNALYMVILLSAPMAIFGLVVGIIVSIFQAVTQINEQTLVFIPKIIAIIV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
LI+ P+I + F + I S
Sbjct: 61 ALILFGPWILNTMVDFTNDIFHSILS 86
>gi|206890429|ref|YP_002249865.1| flagellar biosynthetic protein FliQ [Thermodesulfovibrio
yellowstonii DSM 11347]
gi|206742367|gb|ACI21424.1| flagellar biosynthetic protein FliQ [Thermodesulfovibrio
yellowstonii DSM 11347]
Length = 89
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 49/68 (72%)
Query: 9 IARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPF 68
I++ TIL PVL ++ +G++I QA+TQ+QE+T++FVPK+IAVF+TL+++ P+
Sbjct: 9 ISKQTFETILLVGGPVLLVSLLVGLIIGLFQAITQLQEMTISFVPKVIAVFLTLLLTIPW 68
Query: 69 IGGQISSF 76
+ ++ F
Sbjct: 69 MVNIMTKF 76
>gi|15639704|ref|NP_219154.1| flagellar biosynthetic protein (fliQ) [Treponema pallidum subsp.
pallidum str. Nichols]
gi|189025942|ref|YP_001933714.1| flagellar biosynthetic protein [Treponema pallidum subsp.
pallidum SS14]
gi|3023764|sp|P74931|FLIQ_TREPA RecName: Full=Flagellar biosynthetic protein FliQ
gi|973198|gb|AAB00547.1| FliQ [Treponema pallidum]
gi|3323019|gb|AAC65683.1| flagellar biosynthetic protein (fliQ) [Treponema pallidum subsp.
pallidum str. Nichols]
gi|189018517|gb|ACD71135.1| flagellar biosynthetic protein [Treponema pallidum subsp.
pallidum SS14]
gi|291060081|gb|ADD72816.1| flagellar biosynthetic protein FliQ [Treponema pallidum subsp.
pallidum str. Chicago]
Length = 94
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 40/59 (67%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVF 59
M + VL + R ++ ++ APVL +A+ +G+++A QA+T IQE TLTFVPK++ +
Sbjct: 2 MTQGAVLGLIREGVFQVVLLVAPVLCTALVVGLIVAIFQAVTSIQEQTLTFVPKMLTIL 60
>gi|317492419|ref|ZP_07950848.1| flagellar biosynthetic protein FliQ [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316919758|gb|EFV41088.1| flagellar biosynthetic protein FliQ [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 89
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 33/38 (86%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
G++I+ LQA TQI E+TL+F+PKI+AVF T++I+ P++
Sbjct: 32 GLVISLLQAATQINEMTLSFIPKILAVFATMVIAGPWM 69
>gi|30248476|ref|NP_840546.1| family 3 exporter FliQ [Nitrosomonas europaea ATCC 19718]
gi|30138362|emb|CAD84371.1| Bacterial export proteins, family 3 (FliQ) [Nitrosomonas europaea
ATCC 19718]
Length = 91
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 48/69 (69%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN + I R A+ + +AP+L +A+ G++I+ QA TQI E+TL+F+PK++A+FI
Sbjct: 1 MNPEQAMTIGRQALEVTFTIAAPLLLAALVTGLVISIFQAATQINEMTLSFIPKLLAIFI 60
Query: 61 TLIISAPFI 69
TL ++ P+I
Sbjct: 61 TLTLAGPWI 69
>gi|22126370|ref|NP_669793.1| flagellar biosynthesis protein FliQ [Yersinia pestis KIM 10]
gi|45441391|ref|NP_992930.1| flagellar biosynthesis protein FliQ [Yersinia pestis biovar
Microtus str. 91001]
gi|51596028|ref|YP_070219.1| flagellar biosynthesis protein FliQ [Yersinia pseudotuberculosis
IP 32953]
gi|108807191|ref|YP_651107.1| flagellar biosynthesis protein FliQ [Yersinia pestis Antiqua]
gi|108812465|ref|YP_648232.1| flagellar biosynthesis protein FliQ [Yersinia pestis Nepal516]
gi|145598593|ref|YP_001162669.1| flagellar biosynthesis protein FliQ [Yersinia pestis Pestoides F]
gi|149366233|ref|ZP_01888268.1| flagellar biosynthetic protein FliQ [Yersinia pestis CA88-4125]
gi|153949470|ref|YP_001401272.1| flagellar biosynthesis protein FliQ [Yersinia pseudotuberculosis
IP 31758]
gi|165925897|ref|ZP_02221729.1| flagellar biosynthetic protein FliQ [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165938709|ref|ZP_02227264.1| flagellar biosynthetic protein FliQ [Yersinia pestis biovar
Orientalis str. IP275]
gi|166010877|ref|ZP_02231775.1| flagellar biosynthetic protein FliQ [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166211004|ref|ZP_02237039.1| flagellar biosynthetic protein FliQ [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167401174|ref|ZP_02306677.1| flagellar biosynthetic protein FliQ [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167420108|ref|ZP_02311861.1| flagellar biosynthetic protein FliQ [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167425867|ref|ZP_02317620.1| flagellar biosynthetic protein FliQ [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|167467509|ref|ZP_02332213.1| flagellar biosynthetic protein FliQ [Yersinia pestis FV-1]
gi|170024628|ref|YP_001721133.1| flagellar biosynthesis protein FliQ [Yersinia pseudotuberculosis
YPIII]
gi|186895133|ref|YP_001872245.1| flagellar biosynthesis protein FliQ [Yersinia pseudotuberculosis
PB1/+]
gi|218928940|ref|YP_002346815.1| flagellar biosynthesis protein FliQ [Yersinia pestis CO92]
gi|229896264|ref|ZP_04511434.1| flagellar biosynthetic protein FliQ [Yersinia pestis Pestoides A]
gi|229897201|ref|ZP_04512357.1| flagellar biosynthetic protein FliQ [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229897928|ref|ZP_04513079.1| flagellar biosynthetic protein FliQ [Yersinia pestis biovar
Orientalis str. India 195]
gi|229902841|ref|ZP_04517958.1| flagellar biosynthetic protein FliQ [Yersinia pestis Nepal516]
gi|270486628|ref|ZP_06203702.1| flagellar biosynthetic protein FliQ [Yersinia pestis KIM D27]
gi|21959355|gb|AAM86044.1|AE013852_6 flagellar biosynthesis protein [Yersinia pestis KIM 10]
gi|45436251|gb|AAS61807.1| flagellar biosynthetic protein FliQ [Yersinia pestis biovar
Microtus str. 91001]
gi|51589310|emb|CAH20931.1| flagellar biosynthetic protein FliQ [Yersinia pseudotuberculosis
IP 32953]
gi|108776113|gb|ABG18632.1| flagellar biosynthetic protein FliQ [Yersinia pestis Nepal516]
gi|108779104|gb|ABG13162.1| flagellar biosynthetic protein FliQ [Yersinia pestis Antiqua]
gi|115347551|emb|CAL20460.1| flagellar biosynthetic protein FliQ [Yersinia pestis CO92]
gi|145210289|gb|ABP39696.1| flagellar biosynthetic protein FliQ [Yersinia pestis Pestoides F]
gi|149292646|gb|EDM42720.1| flagellar biosynthetic protein FliQ [Yersinia pestis CA88-4125]
gi|152960965|gb|ABS48426.1| flagellar biosynthetic protein FliQ [Yersinia pseudotuberculosis
IP 31758]
gi|165913323|gb|EDR31945.1| flagellar biosynthetic protein FliQ [Yersinia pestis biovar
Orientalis str. IP275]
gi|165922101|gb|EDR39278.1| flagellar biosynthetic protein FliQ [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165990221|gb|EDR42522.1| flagellar biosynthetic protein FliQ [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166208184|gb|EDR52664.1| flagellar biosynthetic protein FliQ [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166961803|gb|EDR57824.1| flagellar biosynthetic protein FliQ [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167049563|gb|EDR60971.1| flagellar biosynthetic protein FliQ [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167055266|gb|EDR65063.1| flagellar biosynthetic protein FliQ [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|169751162|gb|ACA68680.1| flagellar biosynthetic protein FliQ [Yersinia pseudotuberculosis
YPIII]
gi|186698159|gb|ACC88788.1| flagellar biosynthetic protein FliQ [Yersinia pseudotuberculosis
PB1/+]
gi|229680288|gb|EEO76387.1| flagellar biosynthetic protein FliQ [Yersinia pestis Nepal516]
gi|229688969|gb|EEO81034.1| flagellar biosynthetic protein FliQ [Yersinia pestis biovar
Orientalis str. India 195]
gi|229693538|gb|EEO83587.1| flagellar biosynthetic protein FliQ [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229701187|gb|EEO89216.1| flagellar biosynthetic protein FliQ [Yersinia pestis Pestoides A]
gi|270335132|gb|EFA45909.1| flagellar biosynthetic protein FliQ [Yersinia pestis KIM D27]
gi|320015443|gb|ADV99014.1| flagellar biosynthetic protein FliQ [Yersinia pestis biovar
Medievalis str. Harbin 35]
Length = 89
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 33/38 (86%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
G++++ LQA TQI E+TL+F+PKI+AVF T++I+ P++
Sbjct: 32 GLIVSLLQAATQINEMTLSFIPKILAVFTTMVIAGPWM 69
>gi|238758100|ref|ZP_04619280.1| Flagellar biosynthetic protein FliQ [Yersinia aldovae ATCC 35236]
gi|238794006|ref|ZP_04637624.1| Flagellar biosynthetic protein FliQ [Yersinia intermedia ATCC
29909]
gi|238703638|gb|EEP96175.1| Flagellar biosynthetic protein FliQ [Yersinia aldovae ATCC 35236]
gi|238726638|gb|EEQ18174.1| Flagellar biosynthetic protein FliQ [Yersinia intermedia ATCC
29909]
Length = 89
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 33/38 (86%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
G++++ LQA TQI E+TL+F+PKI+AVF T++I+ P++
Sbjct: 32 GLIVSLLQAATQINEMTLSFIPKILAVFTTMVIAGPWM 69
>gi|148266208|ref|YP_001232914.1| flagellar biosynthetic protein FliQ [Geobacter uraniireducens
Rf4]
gi|146399708|gb|ABQ28341.1| flagellar biosynthetic protein FliQ [Geobacter uraniireducens
Rf4]
Length = 89
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 44/71 (61%)
Query: 6 VLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIIS 65
V+++AR + L SAP+L ++ +G+LI+ QA+T I E TL F PKI AV + L+I
Sbjct: 6 VVQLARRSFEATLLLSAPLLIFSLVVGLLISIFQAVTSINEATLAFAPKIAAVMVALVIF 65
Query: 66 APFIGGQISSF 76
P++ + F
Sbjct: 66 FPWMMSYMGDF 76
>gi|289523555|ref|ZP_06440409.1| flagellar biosynthetic protein FliQ [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
gi|289503247|gb|EFD24411.1| flagellar biosynthetic protein FliQ [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
Length = 68
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 39/64 (60%)
Query: 23 PVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLS 82
PVL AM +G++I LQ T IQE TL F+PKI+AVF+ L + P++ G + F +
Sbjct: 2 PVLLVAMVVGLVIGILQTATSIQEQTLVFIPKILAVFLLLFLLGPWMFGHVGEFAKYLFG 61
Query: 83 RIQS 86
+ S
Sbjct: 62 NLAS 65
>gi|149184189|ref|ZP_01862507.1| flagellar biosynthetic protein [Erythrobacter sp. SD-21]
gi|148831509|gb|EDL49942.1| flagellar biosynthetic protein [Erythrobacter sp. SD-21]
Length = 90
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 47/72 (65%), Gaps = 2/72 (2%)
Query: 1 MNEADVL-EIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAV- 58
M+E+ VL +A +W +APVL +++ +G++I +QA T + E TLTFVPK+ AV
Sbjct: 1 MDESAVLLSLADRMLWIAAMVAAPVLIASLAIGLVIGLIQAATSVNEQTLTFVPKLAAVA 60
Query: 59 FITLIISAPFIG 70
F+ +++ A +G
Sbjct: 61 FVMVVLGASMMG 72
>gi|85859181|ref|YP_461383.1| flagellar biosynthetic protein [Syntrophus aciditrophicus SB]
gi|85722272|gb|ABC77215.1| flagellar biosynthetic protein [Syntrophus aciditrophicus SB]
Length = 89
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 49/81 (60%)
Query: 6 VLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIIS 65
V+ I A+ L + P+L + +G+ I+ QA+TQ+QE+TL FVPKI+AV + L+ +
Sbjct: 6 VVGIMAEAIKVTLLVAGPLLIVGLVVGVAISLFQAVTQVQEMTLVFVPKIVAVLVALVAT 65
Query: 66 APFIGGQISSFVTLVLSRIQS 86
P++ + +F + S I +
Sbjct: 66 LPWMINLLLTFTHNLYSNIPN 86
>gi|238799425|ref|ZP_04642854.1| Flagellar biosynthetic protein FliQ [Yersinia mollaretii ATCC
43969]
gi|238716729|gb|EEQ08616.1| Flagellar biosynthetic protein FliQ [Yersinia mollaretii ATCC
43969]
Length = 83
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 33/38 (86%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
G++++ LQA TQI E+TL+F+PKI+AVF T++I+ P++
Sbjct: 26 GLIVSLLQAATQINEMTLSFIPKILAVFTTMVIAGPWM 63
>gi|256830494|ref|YP_003159222.1| flagellar biosynthetic protein FliQ [Desulfomicrobium baculatum
DSM 4028]
gi|256579670|gb|ACU90806.1| flagellar biosynthetic protein FliQ [Desulfomicrobium baculatum
DSM 4028]
Length = 89
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 33/39 (84%)
Query: 38 LQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSF 76
LQA TQIQE+TLTFVPKIIAVF+ L+IS P+I ++ ++
Sbjct: 38 LQAATQIQEMTLTFVPKIIAVFLALLISFPWIMDKMITY 76
>gi|291562036|emb|CBL40852.1| Flagellar biosynthesis pathway, component FliQ
[butyrate-producing bacterium SS3/4]
Length = 87
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 38/62 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M E +L+I A + S P L +M +G++IA QA TQI E T+TFVPK++A+ +
Sbjct: 1 MTEVQILDIMYEAFQLAMKLSLPFLLISMIVGVVIAVFQAATQINEQTMTFVPKLLAIMV 60
Query: 61 TL 62
L
Sbjct: 61 LL 62
>gi|83747644|ref|ZP_00944680.1| FliQ [Ralstonia solanacearum UW551]
gi|207728357|ref|YP_002256751.1| flagellar biosynthetic protein fliq [Ralstonia solanacearum
MolK2]
gi|207739725|ref|YP_002258118.1| flagellar biosynthetic protein fliq [Ralstonia solanacearum
IPO1609]
gi|300696944|ref|YP_003747605.1| FliQ: flagellar biosynthesis protein. fliQ/mopD/spaQ family
[Ralstonia solanacearum CFBP2957]
gi|83725696|gb|EAP72838.1| FliQ [Ralstonia solanacearum UW551]
gi|206591603|emb|CAQ57215.1| flagellar biosynthetic protein fliq [Ralstonia solanacearum
MolK2]
gi|206593107|emb|CAQ60013.1| flagellar biosynthetic protein fliq [Ralstonia solanacearum
IPO1609]
gi|299073668|emb|CBJ53188.1| FliQ: flagellar biosynthesis protein. fliQ/mopD/spaQ family
[Ralstonia solanacearum CFBP2957]
Length = 89
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 53/81 (65%)
Query: 6 VLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIIS 65
VL +AR AM + AP+L ++ +G+L+A QA TQ+ E TL+F+PK++AV T++++
Sbjct: 6 VLNMARQAMQVAMMIGAPMLLVSLVVGLLVAVFQAATQLNEQTLSFIPKLLAVAATMVLA 65
Query: 66 APFIGGQISSFVTLVLSRIQS 86
P++ G I + VL+ I +
Sbjct: 66 GPWVLGVIVDYTRDVLTNIPN 86
>gi|220913716|ref|YP_002489025.1| flagellar biosynthetic protein FliQ [Arthrobacter
chlorophenolicus A6]
gi|219860594|gb|ACL40936.1| flagellar biosynthetic protein FliQ [Arthrobacter
chlorophenolicus A6]
Length = 91
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 55/84 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ VL+I AM +APVL +A+ +G+ I+ LQ++TQ+QE TL+FVPK +AV I
Sbjct: 1 MDTNAVLDICLQAMIVAAKLAAPVLVTALVVGLAISLLQSITQLQEATLSFVPKAVAVAI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
L++ A ++ ++ SF + +RI
Sbjct: 61 ALVVCAHWMITEMVSFTNELFTRI 84
>gi|238751770|ref|ZP_04613258.1| Flagellar biosynthetic protein FliQ [Yersinia rohdei ATCC 43380]
gi|238710041|gb|EEQ02271.1| Flagellar biosynthetic protein FliQ [Yersinia rohdei ATCC 43380]
Length = 89
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 33/38 (86%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
G++++ LQA TQI E+TL+F+PKI+AVF T++I+ P++
Sbjct: 32 GLIVSLLQAATQINEMTLSFIPKILAVFTTMVIAGPWM 69
>gi|238785488|ref|ZP_04629471.1| Flagellar biosynthetic protein FliQ [Yersinia bercovieri ATCC
43970]
gi|238713590|gb|EEQ05619.1| Flagellar biosynthetic protein FliQ [Yersinia bercovieri ATCC
43970]
Length = 89
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 33/38 (86%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
G++++ LQA TQI E+TL+F+PKI+AVF T++I+ P++
Sbjct: 32 GLIVSLLQAATQINEMTLSFIPKILAVFATMVIAGPWM 69
>gi|167034911|ref|YP_001670142.1| flagellar biosynthesis protein FliQ [Pseudomonas putida GB-1]
gi|166861399|gb|ABY99806.1| flagellar biosynthetic protein FliQ [Pseudomonas putida GB-1]
Length = 89
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 49/77 (63%)
Query: 8 EIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAP 67
++ R A+W A ++ ++ +G+++A QA TQI E TL+F+P+++ + ITLI++ P
Sbjct: 8 DLFRDALWLTTLMVAVLVVPSLLVGLVVAMFQAATQINEQTLSFLPRLLVMLITLIVAGP 67
Query: 68 FIGGQISSFVTLVLSRI 84
++ + ++T + + I
Sbjct: 68 WLVQKFMEYITTLYTNI 84
>gi|259909719|ref|YP_002650075.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation
pathway-hrcS protein [Erwinia pyrifoliae Ep1/96]
gi|76152317|gb|ABA39818.1| HrcS [Erwinia pyrifoliae]
gi|224965341|emb|CAX56873.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation
pathway-hrcS protein [Erwinia pyrifoliae Ep1/96]
gi|283479805|emb|CAY75721.1| Type III secretion protein HrcS [Erwinia pyrifoliae DSM 12163]
gi|310766417|gb|ADP11367.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation
pathway-hrcS protein [Erwinia sp. Ejp617]
Length = 86
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 44/66 (66%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
D+L + + AM ++ SAP L A+ +G+L++ LQA+ Q+Q+ TL F K++AV I L +
Sbjct: 2 DILNLFKQAMLLVVLLSAPPLLVAVIIGVLVSLLQAVMQLQDQTLPFAIKLVAVGIALAL 61
Query: 65 SAPFIG 70
S +IG
Sbjct: 62 SGRWIG 67
>gi|242238992|ref|YP_002987173.1| flagellar biosynthetic protein FliQ [Dickeya dadantii Ech703]
gi|242131049|gb|ACS85351.1| flagellar biosynthetic protein FliQ [Dickeya dadantii Ech703]
Length = 89
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 36/46 (78%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFV 77
G++++ LQA TQI E+TL+F+PK++AVF T+II+ P++ G +V
Sbjct: 32 GLIVSILQAATQINEMTLSFIPKVLAVFATIIIAGPWMLGVFLDYV 77
>gi|88813212|ref|ZP_01128452.1| flagellar biosynthetic protein FliQ [Nitrococcus mobilis Nb-231]
gi|88789534|gb|EAR20661.1| flagellar biosynthetic protein FliQ [Nitrococcus mobilis Nb-231]
Length = 89
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 43/63 (68%)
Query: 7 LEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISA 66
+E+ + A+ + +AP+L SA+ G++I QA TQI E T++FVPK+ + +TL ++A
Sbjct: 7 IELGKQALTVAVLIAAPILLSALAAGLIIGMFQAATQINEQTMSFVPKLAVLVLTLFVAA 66
Query: 67 PFI 69
P++
Sbjct: 67 PWM 69
>gi|304311652|ref|YP_003811250.1| Type III secretory pathway protein [gamma proteobacterium HdN1]
gi|301797385|emb|CBL45605.1| Type III secretory pathway protein [gamma proteobacterium HdN1]
Length = 89
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 44/65 (67%)
Query: 6 VLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIIS 65
V+++ + A+W +L SAP++ A G++IAFLQA+TQ+QE TL F K++ V + ++
Sbjct: 5 VIQLTQEALWLLLMLSAPIILGAAASGLVIAFLQAVTQLQEQTLGFAVKLVVVSALIFLT 64
Query: 66 APFIG 70
+ +G
Sbjct: 65 SGLVG 69
>gi|224372324|ref|YP_002606696.1| flagellar biosynthesis protein FliQ [Nautilia profundicola AmH]
gi|223589746|gb|ACM93482.1| flagellar biosynthetic protein FliQ [Nautilia profundicola AmH]
Length = 88
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 40/61 (65%)
Query: 28 AMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSRIQSS 87
M +G+LI+ QA TQI E+TL+FVPKI+A+ + LI + P++ ++ F T V I +
Sbjct: 27 GMIVGLLISIFQATTQINEMTLSFVPKILAIAVILIFTMPWMLNEMIDFTTYVFKLIPTF 86
Query: 88 L 88
L
Sbjct: 87 L 87
>gi|294013058|ref|YP_003546518.1| flagellar biosynthesis pathway component FliQ [Sphingobium
japonicum UT26S]
gi|292676388|dbj|BAI97906.1| flagellar biosynthesis pathway component FliQ [Sphingobium
japonicum UT26S]
Length = 90
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 1 MNEADV-LEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVF 59
M AD + +A+ A+W ++AP+L A+ G++I +QA T I E TL F+PKII V
Sbjct: 1 MENADFFMGLAQQALWITALAAAPILIPALVAGVVIGMVQAATSINEQTLAFIPKIIVVG 60
Query: 60 ITLIISAPFIGGQISSFVTLVLSRIQSSL 88
L++ I I+ F + RI L
Sbjct: 61 AMLVLFGGSIMVLIADFTREIFERIPDLL 89
>gi|15616705|ref|NP_239917.1| flagellar biosynthetic protein FliQ [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
gi|219681461|ref|YP_002467846.1| flagellar biosynthetic protein FliQ [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
gi|257471136|ref|ZP_05635135.1| flagellar biosynthetic protein FliQ [Buchnera aphidicola str.
LSR1 (Acyrthosiphon pisum)]
gi|11386789|sp|P57185|FLIQ_BUCAI RecName: Full=Flagellar biosynthetic protein FliQ
gi|25303012|pir||C84939 flagellar biosynthetic protein fliQ [imported] - Buchnera sp.
(strain APS)
gi|10038768|dbj|BAB12803.1| flagellar biosynthetic protein fliQ [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
gi|219624304|gb|ACL30459.1| flagellar biosynthetic protein FliQ [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
gi|311086977|gb|ADP67057.1| flagellar biosynthetic protein FliQ [Buchnera aphidicola str.
JF99 (Acyrthosiphon pisum)]
gi|311087554|gb|ADP67633.1| flagellar biosynthetic protein FliQ [Buchnera aphidicola str.
JF98 (Acyrthosiphon pisum)]
Length = 89
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 51/84 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+E+ AM L ++P+L +A+ G++I+ LQA TQ+ E TL+F+PKII+V
Sbjct: 1 MTSEYVMELFYNAMKVALIIASPLLLAALISGLIISILQAATQVNEQTLSFIPKIISVLG 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
+ I P++ G + ++ + + I
Sbjct: 61 VISILGPWMLGVMLDYMHNLFNNI 84
>gi|292487015|ref|YP_003529885.1| type III secretion protein HrcS [Erwinia amylovora CFBP1430]
gi|292900600|ref|YP_003539969.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
gi|1181174|gb|AAB06006.1| HrcS [Erwinia amylovora]
gi|291200448|emb|CBJ47577.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
gi|291552432|emb|CBA19477.1| Type III secretion protein HrcS [Erwinia amylovora CFBP1430]
gi|312171084|emb|CBX79343.1| Type III secretion protein HrcS [Erwinia amylovora ATCC BAA-2158]
Length = 86
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 44/66 (66%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
D+L + + AM ++ SAP L A+ +G+L++ LQA+ Q+Q+ TL F K++AV I L +
Sbjct: 2 DILNLFKQAMLLVVLLSAPPLLVAVIVGVLVSLLQAVMQLQDQTLPFAIKLVAVGIALAL 61
Query: 65 SAPFIG 70
S +IG
Sbjct: 62 SGRWIG 67
>gi|325273553|ref|ZP_08139783.1| flagellar biosynthesis protein FliQ [Pseudomonas sp. TJI-51]
gi|324101313|gb|EGB98929.1| flagellar biosynthesis protein FliQ [Pseudomonas sp. TJI-51]
Length = 89
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 49/77 (63%)
Query: 8 EIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAP 67
++ R A+W A ++ ++ +G+++A QA TQI E TL+F+P+++ + ITLI++ P
Sbjct: 8 DLFRDALWLTTLMVAVLVVPSLLVGLVVAMFQAATQINEQTLSFLPRLLVMLITLIVAGP 67
Query: 68 FIGGQISSFVTLVLSRI 84
++ + ++T + + I
Sbjct: 68 WLVQKFMEYITTLYANI 84
>gi|32471370|ref|NP_864363.1| flagellar biosynthetic protein fliQ [Rhodopirellula baltica SH 1]
gi|32443211|emb|CAD72042.1| probable flagellar biosynthetic protein fliQ [Rhodopirellula
baltica SH 1]
gi|327537628|gb|EGF24340.1| Bacterial export protein FliQ, family 3 [Rhodopirellula baltica
WH47]
Length = 88
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 47/77 (61%)
Query: 4 ADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLI 63
+D +++ R A+ + + P+L M G++I +QALTQIQ+ T++FVPKI+A+ LI
Sbjct: 5 SDAIDLVREALLAAVVLALPMLAVGMLAGLVIGLIQALTQIQDQTVSFVPKIMAMAAVLI 64
Query: 64 ISAPFIGGQISSFVTLV 80
P++ ++ F V
Sbjct: 65 ACLPWLMSRMVEFTRHV 81
>gi|219682017|ref|YP_002468401.1| flagellar biosynthetic protein FliQ [Buchnera aphidicola str.
Tuc7 (Acyrthosiphon pisum)]
gi|219621750|gb|ACL29906.1| flagellar biosynthetic protein FliQ [Buchnera aphidicola str.
Tuc7 (Acyrthosiphon pisum)]
gi|311085825|gb|ADP65907.1| flagellar biosynthetic protein FliQ [Buchnera aphidicola str.
LL01 (Acyrthosiphon pisum)]
gi|311086398|gb|ADP66479.1| flagellar biosynthetic protein FliQ [Buchnera aphidicola str.
TLW03 (Acyrthosiphon pisum)]
Length = 89
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 51/84 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+E+ AM L ++P+L +A+ G++I+ LQA TQ+ E TL+F+PKII+V
Sbjct: 1 MTSEYVMELFYDAMKVALIIASPLLLAALISGLIISILQAATQVNEQTLSFIPKIISVLG 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
+ I P++ G + ++ + + I
Sbjct: 61 VISILGPWMLGVMLDYMHNLFNNI 84
>gi|37525860|ref|NP_929204.1| flagellar biosynthesis protein FliQ [Photorhabdus luminescens
subsp. laumondii TTO1]
gi|36785289|emb|CAE14230.1| flagellar biosynthetic protein FliQ [Photorhabdus luminescens
subsp. laumondii TTO1]
Length = 89
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 33/38 (86%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
G++++ LQA TQ+ E+TL+F+PKI+AVF+T +I+ P++
Sbjct: 32 GLIVSLLQAATQVNEMTLSFIPKILAVFVTTVIAGPWM 69
>gi|78043118|ref|YP_359853.1| flagellar biosynthetic protein FliQ [Carboxydothermus
hydrogenoformans Z-2901]
gi|77995233|gb|ABB14132.1| flagellar biosynthetic protein FliQ [Carboxydothermus
hydrogenoformans Z-2901]
Length = 89
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 34/43 (79%)
Query: 22 APVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
P L ++ +G+++ LQA TQIQE TLTFVPK+IAVF+TL++
Sbjct: 22 GPPLIVSLVVGLIVGILQAATQIQEQTLTFVPKLIAVFLTLLL 64
>gi|87294846|gb|ABD36817.1| flagellar biosynthesis protein FliQ [Pseudomonas fluorescens]
Length = 89
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 41/62 (66%)
Query: 8 EIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAP 67
+I R A+W A ++ ++ +G+L+A QA TQI E TL+F+P+++ + +TLI+ P
Sbjct: 8 DIFREALWLTTMMVAILVVPSLLVGLLVAMFQAATQINEQTLSFLPRLLVMLVTLIVGGP 67
Query: 68 FI 69
+I
Sbjct: 68 WI 69
>gi|169831897|ref|YP_001717879.1| flagellar biosynthetic protein FliQ [Candidatus Desulforudis
audaxviator MP104C]
gi|169638741|gb|ACA60247.1| flagellar biosynthetic protein FliQ [Candidatus Desulforudis
audaxviator MP104C]
Length = 87
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 56/84 (66%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M ++ +E+ + A+ +L +AP L ++ +G++I+ LQA TQIQ+ +TFVPKI+AVF+
Sbjct: 1 MTDSLAVELTQKALMMVLLLTAPPLLVSLVVGLVISILQAATQIQDQMITFVPKIVAVFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
+L++ AP+ ++ + + RI
Sbjct: 61 SLLLLAPWYVRILTGYTAELFGRI 84
>gi|297584052|ref|YP_003699832.1| flagellar biosynthetic protein FliQ [Bacillus selenitireducens
MLS10]
gi|297142509|gb|ADH99266.1| flagellar biosynthetic protein FliQ [Bacillus selenitireducens
MLS10]
Length = 89
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 43/69 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ V+ A ++T L + P+L +A+ +G+ ++ QA TQIQE TL F+PKI V I
Sbjct: 1 MSPEMVIGWAEQGVFTTLLIAGPLLITALAIGLAVSVFQATTQIQEQTLAFIPKIAGVLI 60
Query: 61 TLIISAPFI 69
L+I P++
Sbjct: 61 ALVIFGPWM 69
>gi|239628945|ref|ZP_04671976.1| conserved hypothetical protein [Clostridiales bacterium
1_7_47_FAA]
gi|239519091|gb|EEQ58957.1| conserved hypothetical protein [Clostridiales bacterium
1_7_47FAA]
Length = 87
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 34/54 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPK 54
MN V+EI + AM + P+L ++ +G+L+A QA TQI E TLTFVPK
Sbjct: 1 MNAEQVMEIMKEAMLVAFELAGPLLIVSIAVGLLVAIFQAATQIHEQTLTFVPK 54
>gi|222100862|ref|YP_002535430.1| Flagellar biosynthetic protein FliQ [Thermotoga neapolitana DSM
4359]
gi|221573252|gb|ACM24064.1| Flagellar biosynthetic protein FliQ [Thermotoga neapolitana DSM
4359]
Length = 91
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 48/77 (62%)
Query: 7 LEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISA 66
L+I ++ + IL P L ++ +G++I+ QA+TQI E TL F P++I +F+TL+ +
Sbjct: 10 LDIMKSGIGLILEIIVPPLVVSLIVGLIISIFQAVTQIHEQTLMFAPRVIVMFLTLLFLS 69
Query: 67 PFIGGQISSFVTLVLSR 83
++ +I F T +L R
Sbjct: 70 GWMAQKILDFFTELLQR 86
>gi|268316331|ref|YP_003290050.1| flagellar biosynthetic protein FliQ [Rhodothermus marinus DSM
4252]
gi|262333865|gb|ACY47662.1| flagellar biosynthetic protein FliQ [Rhodothermus marinus DSM
4252]
Length = 89
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 50/76 (65%)
Query: 11 RAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIG 70
+ A+ T L P+L A+ +G++++ LQA+T +QE+TL+++PKI+AV L++ AP++
Sbjct: 11 QEALKTALLLVGPLLAVALIVGLIVSLLQAITSVQEMTLSYIPKILAVGFVLLLLAPWML 70
Query: 71 GQISSFVTLVLSRIQS 86
++ F VL I +
Sbjct: 71 QMLTDFAVQVLQFIPN 86
>gi|126734105|ref|ZP_01749852.1| flagellar biosynthetic protein FliQ [Roseobacter sp. CCS2]
gi|126716971|gb|EBA13835.1| flagellar biosynthetic protein FliQ [Roseobacter sp. CCS2]
Length = 89
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPK---IIA 57
M+E + R +W S P+L A+ G+L+ QALT IQE+TLTFVPK IIA
Sbjct: 1 MSETLFYDTLRQGLWVAFVISIPILSVALASGLLVGLFQALTSIQEMTLTFVPKLAAIIA 60
Query: 58 VF 59
VF
Sbjct: 61 VF 62
>gi|218887502|ref|YP_002436823.1| type III secretion protein, HrpO family [Desulfovibrio vulgaris
str. 'Miyazaki F']
gi|218758456|gb|ACL09355.1| type III secretion protein, HrpO family [Desulfovibrio vulgaris
str. 'Miyazaki F']
Length = 86
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 48/81 (59%)
Query: 3 EADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITL 62
E+ + A A++ +L S P + A +GILI+ +QA+TQ+QE TLTF K+IAV +TL
Sbjct: 2 ESMAMTYAVKALYLVLMLSMPPIVVASVIGILISLVQAITQLQEQTLTFGVKLIAVVLTL 61
Query: 63 IISAPFIGGQISSFVTLVLSR 83
+ + G ++ F + R
Sbjct: 62 FLMGGWFGAELLRFADEIFVR 82
>gi|330808229|ref|YP_004352691.1| flagellar biosynthetic protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327376337|gb|AEA67687.1| flagellar biosynthetic protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 89
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 45/69 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +++ R A+W + A ++ ++ +G+L+A QA TQI E TL+F+P+++ + +
Sbjct: 1 MTPEVAVDLFREALWLTTTMVAILVIPSLLVGLLVAMFQAATQINEQTLSFLPRLLVMLV 60
Query: 61 TLIISAPFI 69
TLI++ P++
Sbjct: 61 TLIVAGPWL 69
>gi|203287734|ref|YP_002222749.1| flagellar biosynthesis protein [Borrelia recurrentis A1]
gi|201084954|gb|ACH94528.1| flagellar biosynthesis protein [Borrelia recurrentis A1]
Length = 87
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 48/66 (72%)
Query: 21 SAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLV 80
SAP+L +A+ +G+L++ QA+T IQ+ TL+F+PKII + + L+I P+I +I F LV
Sbjct: 21 SAPILITALIVGLLVSIFQAVTSIQDQTLSFIPKIIIILLVLVIFGPWILKKIMQFTFLV 80
Query: 81 LSRIQS 86
++IQ+
Sbjct: 81 FNQIQN 86
>gi|317407762|gb|EFV87689.1| BscS protein [Achromobacter xylosoxidans C54]
Length = 88
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 49/76 (64%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ +D++ +++ +L S P + +A +G L + QALTQIQE TL+F K+I VF
Sbjct: 1 MSTSDLVSYMTQSLYLVLWLSLPPIAAAAIIGTLFSLFQALTQIQEQTLSFAIKMIVVFG 60
Query: 61 TLIISAPFIGGQISSF 76
++++A ++G ++ +F
Sbjct: 61 VILLTARWVGTELYNF 76
>gi|107025867|ref|YP_623378.1| Type III secretion protein HrpO [Burkholderia cenocepacia AU
1054]
gi|116692949|ref|YP_838482.1| HrpO family type III secretion protein [Burkholderia cenocepacia
HI2424]
gi|170737786|ref|YP_001779046.1| HrpO family type III secretion protein [Burkholderia cenocepacia
MC0-3]
gi|206563897|ref|YP_002234660.1| type III secretion system protein [Burkholderia cenocepacia
J2315]
gi|254250195|ref|ZP_04943515.1| Type III secretory pathway, component EscS [Burkholderia
cenocepacia PC184]
gi|18092667|gb|AAL59396.1| BcscS [Burkholderia cenocepacia]
gi|28394248|gb|AAO31723.1| BcscS [Burkholderia cenocepacia]
gi|105895241|gb|ABF78405.1| Type III secretion protein HrpO [Burkholderia cenocepacia AU
1054]
gi|116650949|gb|ABK11589.1| type III secretion protein, HrpO family [Burkholderia cenocepacia
HI2424]
gi|124876696|gb|EAY66686.1| Type III secretory pathway, component EscS [Burkholderia
cenocepacia PC184]
gi|169819974|gb|ACA94556.1| type III secretion protein, HrpO family [Burkholderia cenocepacia
MC0-3]
gi|198039937|emb|CAR55915.1| type III secretion system protein [Burkholderia cenocepacia
J2315]
Length = 92
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 51/84 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + +L++ R A+ +L S P++ A G+++A LQA+TQ+Q+ + ++IAV +
Sbjct: 1 MTSSTILDLTRQALMLVLLLSLPIVLIATVTGLVVAILQAVTQVQDANIGIAVRLIAVMV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
L++ + ++GG++ F L R+
Sbjct: 61 ALVLLSGWLGGEVLRFAQQALERM 84
>gi|167750711|ref|ZP_02422838.1| hypothetical protein EUBSIR_01689 [Eubacterium siraeum DSM 15702]
gi|167656390|gb|EDS00520.1| hypothetical protein EUBSIR_01689 [Eubacterium siraeum DSM 15702]
Length = 96
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 41/63 (65%)
Query: 7 LEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISA 66
+E+ AA+ L PVL +A+ +G++IA LQA TQ+ E TL+F PK I V I L++
Sbjct: 13 MEVFTAALVLALKLGLPVLIAAVVIGLIIAILQAATQVHEQTLSFAPKAIVVAIVLLLFG 72
Query: 67 PFI 69
P++
Sbjct: 73 PWM 75
>gi|229544409|ref|ZP_04433467.1| flagellar biosynthetic protein FliQ [Bacillus coagulans 36D1]
gi|229324894|gb|EEN90571.1| flagellar biosynthetic protein FliQ [Bacillus coagulans 36D1]
Length = 89
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 50/84 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E V+ +A + P+L A+ +G++++ QA TQIQE TL FVPKI+AV +
Sbjct: 1 MSEEMVISLAEKGIMVTFMVCGPLLLIALVVGMIVSIFQAATQIQEQTLAFVPKIVAVLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
L++ P++ + ++ +LS +
Sbjct: 61 GLVLLGPWMLSHMLTYTKEILSNL 84
>gi|303246799|ref|ZP_07333076.1| flagellar biosynthetic protein FliQ [Desulfovibrio fructosovorans
JJ]
gi|302491816|gb|EFL51696.1| flagellar biosynthetic protein FliQ [Desulfovibrio fructosovorans
JJ]
Length = 89
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 58/83 (69%)
Query: 6 VLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIIS 65
V+ +AR A+ T L + P+L ++ +G++I+ LQA TQIQE+TLTFVPKI+++FI L+++
Sbjct: 6 VVALARQAIETALFLALPMLGVSLVVGVVISVLQAATQIQEMTLTFVPKILSMFIALLVA 65
Query: 66 APFIGGQISSFVTLVLSRIQSSL 88
P++ ++ +F + I + L
Sbjct: 66 FPWMMDKMINFTKELFMNIPNYL 88
>gi|188532665|ref|YP_001906462.1| HrcS protein (hrp cluster) [Erwinia tasmaniensis Et1/99]
gi|188027707|emb|CAO95560.1| HrcS protein (hrp cluster) [Erwinia tasmaniensis Et1/99]
Length = 86
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 44/66 (66%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
D+L + + AM ++ SAP L A+ +G+L++ LQA+ Q+Q+ TL F K++AV + L +
Sbjct: 2 DILNLFKQAMLLVVLLSAPPLLVAVIVGVLVSLLQAVMQLQDQTLPFAIKLVAVGVALAL 61
Query: 65 SAPFIG 70
S +IG
Sbjct: 62 SGRWIG 67
>gi|94495440|ref|ZP_01302020.1| flagellar biosynthetic protein [Sphingomonas sp. SKA58]
gi|94424828|gb|EAT09849.1| flagellar biosynthetic protein [Sphingomonas sp. SKA58]
Length = 90
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 1 MNEADV-LEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVF 59
M AD L +A+ A+W ++AP+L A+ G++I +QA T I E TL+F+PK+I V
Sbjct: 1 MENADFFLGLAQQALWITALAAAPILIPALISGLIIGMIQAATSINEQTLSFIPKLIVVG 60
Query: 60 ITLIISAPFIGGQISSFVTLVLSRIQSSL 88
L++ I ++ F + RI L
Sbjct: 61 AMLVLFGGSIMVLVADFTREIFERIPDLL 89
>gi|120554900|ref|YP_959251.1| flagellar biosynthesis protein FliQ [Marinobacter aquaeolei VT8]
gi|120324749|gb|ABM19064.1| flagellar biosynthetic protein FliQ [Marinobacter aquaeolei VT8]
Length = 89
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 50/84 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V++I R A+W I+ SA ++ + +G++++ QA TQI E TL+F+P+++ I
Sbjct: 1 MTPETVIDILREALWLIVLLSAVIIGPGLVIGLVVSTFQAATQINEQTLSFLPRLLITLI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
+I + P++ + ++SRI
Sbjct: 61 VIIAAGPWMLTTLLDHANGLISRI 84
>gi|163781852|ref|ZP_02176852.1| flagellar biosynthesis protein FliQ [Hydrogenivirga sp.
128-5-R1-1]
gi|159883072|gb|EDP76576.1| flagellar biosynthesis protein FliQ [Hydrogenivirga sp.
128-5-R1-1]
Length = 89
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 40/62 (64%)
Query: 23 PVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLS 82
PVL + +G++++ QA TQIQE+TL ++PKI+A +T+ + ++ G++ F VL
Sbjct: 23 PVLLATFIVGLVVSIFQAATQIQEMTLAYIPKIVAAMVTIFVLGGWMMGKLVDFTKEVLI 82
Query: 83 RI 84
I
Sbjct: 83 NI 84
>gi|167588262|ref|ZP_02380650.1| type III secretion protein, HrpO family [Burkholderia ubonensis
Bu]
Length = 92
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 51/84 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + +L++ R A+ +L S P++ A G+++A LQA+TQ+Q+ L ++IAV +
Sbjct: 1 MTGSTILDLTRQALMLVLLLSLPIVAIATVTGLVVAILQAVTQVQDANLGMAVRLIAVMV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
L++ + ++GG++ F L R+
Sbjct: 61 ALVLLSGWLGGEVLRFAQQALERM 84
>gi|325529066|gb|EGD06067.1| hypothetical protein B1M_03247 [Burkholderia sp. TJI49]
Length = 92
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 51/84 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + +L++ R A+ +L S P++ A G+++A LQA+TQ+Q+ + ++IAV +
Sbjct: 1 MTSSTILDLTRQALMLVLLLSLPIVLIATVTGLVVAILQAVTQVQDANIGIAVRLIAVMV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
L++ + ++GG++ F L R+
Sbjct: 61 ALVLLSGWLGGEVLRFAQQALERM 84
>gi|167770201|ref|ZP_02442254.1| hypothetical protein ANACOL_01544 [Anaerotruncus colihominis DSM
17241]
gi|167667523|gb|EDS11653.1| hypothetical protein ANACOL_01544 [Anaerotruncus colihominis DSM
17241]
Length = 87
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 48/77 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + V+ I + A+ + P+L ++ +G++IA QA TQI E TLTFVPKI+A+ +
Sbjct: 1 MTQEQVMGIFQQAIILAFKLAGPLLAVSIIIGLVIAIFQAATQIHEQTLTFVPKIVAIAL 60
Query: 61 TLIISAPFIGGQISSFV 77
+++ P++ +S F+
Sbjct: 61 MMLLLGPWMITMLSDFM 77
>gi|323143900|ref|ZP_08078562.1| surface presentation of antigens protein SpaQ [Succinatimonas
hippei YIT 12066]
gi|322416327|gb|EFY06999.1| surface presentation of antigens protein SpaQ [Succinatimonas
hippei YIT 12066]
Length = 87
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 48/74 (64%)
Query: 3 EADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITL 62
+A+V++I + +L S P + A +G+L++ +QA+TQ+QE TL+F K+IAV ITL
Sbjct: 2 DAEVVDIISQCFYLVLILSLPPILVASVVGVLLSLIQAITQLQEQTLSFGIKLIAVCITL 61
Query: 63 IISAPFIGGQISSF 76
++A + ++ F
Sbjct: 62 FLTAGWFSNELLRF 75
>gi|15596889|ref|NP_250383.1| translocation protein in type III secretion [Pseudomonas
aeruginosa PAO1]
gi|107101124|ref|ZP_01365042.1| hypothetical protein PaerPA_01002156 [Pseudomonas aeruginosa
PACS2]
gi|116049642|ref|YP_791553.1| putative translocation protein in type III secretion [Pseudomonas
aeruginosa UCBPP-PA14]
gi|218892352|ref|YP_002441219.1| putative translocation protein in type III secretion [Pseudomonas
aeruginosa LESB58]
gi|254234791|ref|ZP_04928114.1| hypothetical protein PACG_00661 [Pseudomonas aeruginosa C3719]
gi|254240037|ref|ZP_04933359.1| hypothetical protein PA2G_00674 [Pseudomonas aeruginosa 2192]
gi|296389924|ref|ZP_06879399.1| putative translocation protein in type III secretion [Pseudomonas
aeruginosa PAb1]
gi|313110378|ref|ZP_07796267.1| putative translocation protein in type III secretion [Pseudomonas
aeruginosa 39016]
gi|9947665|gb|AAG05081.1|AE004596_7 probable translocation protein in type III secretion [Pseudomonas
aeruginosa PAO1]
gi|115584863|gb|ABJ10878.1| putative translocation protein in type III secretion [Pseudomonas
aeruginosa UCBPP-PA14]
gi|126166722|gb|EAZ52233.1| hypothetical protein PACG_00661 [Pseudomonas aeruginosa C3719]
gi|126193415|gb|EAZ57478.1| hypothetical protein PA2G_00674 [Pseudomonas aeruginosa 2192]
gi|218772578|emb|CAW28361.1| probable translocation protein in type III secretion [Pseudomonas
aeruginosa LESB58]
gi|310882769|gb|EFQ41363.1| putative translocation protein in type III secretion [Pseudomonas
aeruginosa 39016]
Length = 88
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 52/84 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ AD+L +W +L S P + A +G L++ +QALTQIQE TL FV K++AV +
Sbjct: 1 MSSADILHFTNQTLWLVLVLSLPPVLVAALIGTLVSLVQALTQIQEQTLGFVAKLVAVVV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
L ++ ++GG++ F + L ++
Sbjct: 61 VLFATSGWLGGELYRFAEMTLLKV 84
>gi|309779458|ref|ZP_07674219.1| flagellar biosynthetic protein FliQ [Ralstonia sp. 5_7_47FAA]
gi|308921699|gb|EFP67335.1| flagellar biosynthetic protein FliQ [Ralstonia sp. 5_7_47FAA]
Length = 89
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 53/81 (65%)
Query: 6 VLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIIS 65
VL++AR AM + AP+L ++ +G+L+A QA TQ+ E TL+F+PK++AV T++++
Sbjct: 6 VLDMARQAMQVAMMVGAPMLLVSLVVGLLVAVFQAATQLNEQTLSFIPKLLAVAATMVLA 65
Query: 66 APFIGGQISSFVTLVLSRIQS 86
P+I I + VL+ I +
Sbjct: 66 GPWIVAVIVDYTRGVLTNIPN 86
>gi|148546751|ref|YP_001266853.1| flagellar biosynthesis protein FliQ [Pseudomonas putida F1]
gi|148510809|gb|ABQ77669.1| flagellar biosynthetic protein FliQ [Pseudomonas putida F1]
Length = 89
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 46/71 (64%)
Query: 8 EIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAP 67
++ R A+W A ++ ++ +G+++A QA TQI E TL+F+P+++ + ITLII+ P
Sbjct: 8 DLFRDALWLTTLLVAVLVVPSLLVGLVVAMFQAATQINEQTLSFLPRLLVMLITLIIAGP 67
Query: 68 FIGGQISSFVT 78
++ + ++T
Sbjct: 68 WLVQKFMEYIT 78
>gi|313497810|gb|ADR59176.1| FliQ [Pseudomonas putida BIRD-1]
Length = 89
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 48/77 (62%)
Query: 8 EIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAP 67
++ R A+W A ++ ++ +G+++A QA TQI E TL+F+P+++ + ITLII+ P
Sbjct: 8 DLFRDALWLTTLMVAVLVVPSLLVGLVVAMFQAATQINEQTLSFLPRLLVMLITLIIAGP 67
Query: 68 FIGGQISSFVTLVLSRI 84
++ + + T + + I
Sbjct: 68 WLVQKFMEYFTTLYTNI 84
>gi|182418348|ref|ZP_02949643.1| flagellar biosynthetic protein FliQ [Clostridium butyricum 5521]
gi|237666892|ref|ZP_04526877.1| export protein FliQ, family 3 [Clostridium butyricum E4 str. BoNT
E BL5262]
gi|182377730|gb|EDT75274.1| flagellar biosynthetic protein FliQ [Clostridium butyricum 5521]
gi|237658091|gb|EEP55646.1| export protein FliQ, family 3 [Clostridium butyricum E4 str. BoNT
E BL5262]
Length = 89
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 38/57 (66%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIA 57
M+E + + + + T + AP+L + LG++I+ +QA TQIQE TLTFVPK+IA
Sbjct: 1 MSEIMLNGVVKDTVVTAIKVGAPILIVVLVLGLIISIIQATTQIQEQTLTFVPKLIA 57
>gi|159045790|ref|YP_001534584.1| flagellar biosynthetic protein FliQ [Dinoroseobacter shibae DFL
12]
gi|157913550|gb|ABV94983.1| flagellar biosynthetic protein FliQ [Dinoroseobacter shibae DFL
12]
Length = 88
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M E + R +W + SAP+L A+ G+++ QALT +QE+TLTFVPK +
Sbjct: 1 MTEIIFFDTLRQGLWVSVLMSAPILTVALVAGVIVGLFQALTSVQEMTLTFVPKAALMLA 60
Query: 61 TLIISAPFIGGQISSF 76
+S F+ ++ F
Sbjct: 61 VFWVSMSFMTETLTDF 76
>gi|323388137|gb|ADX60333.1| type III secretion protein RscS [Pseudomonas fluorescens]
Length = 87
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 47/77 (61%)
Query: 11 RAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIG 70
+ M ++ SAP L A+ +G+L + +QAL QIQ+ TL F K++AV ITLI++ +IG
Sbjct: 8 KQGMLLVVVLSAPPLIVAVVVGVLTSLVQALMQIQDQTLPFGIKLVAVGITLILTGRWIG 67
Query: 71 GQISSFVTLVLSRIQSS 87
++ + L+ I S
Sbjct: 68 VELIQLINLMFDMIARS 84
>gi|261821162|ref|YP_003259268.1| flagellar biosynthesis protein FliQ [Pectobacterium wasabiae
WPP163]
gi|261605175|gb|ACX87661.1| flagellar biosynthetic protein FliQ [Pectobacterium wasabiae
WPP163]
Length = 89
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 31/38 (81%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
G+ I+ LQA TQI E+TL+F+PKI+ VF TL+I+ P++
Sbjct: 32 GLTISLLQAATQINEMTLSFIPKILTVFFTLVIAGPWM 69
>gi|77457777|ref|YP_347282.1| flagellar biosynthesis protein FliQ [Pseudomonas fluorescens
Pf0-1]
gi|77381780|gb|ABA73293.1| flagellar biosynthetic protein FliQ [Pseudomonas fluorescens
Pf0-1]
Length = 89
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 47/77 (61%)
Query: 8 EIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAP 67
+I R A+W A ++ ++ +G+L++ QA TQI E TL+F+P+++ + +TLI++ P
Sbjct: 8 DIFREALWLTTMMVAILVVPSLLVGLLVSMFQAATQINEQTLSFLPRLLVMLVTLIVAGP 67
Query: 68 FIGGQISSFVTLVLSRI 84
++ ++T + I
Sbjct: 68 WLVQTFMEYITQLYKNI 84
>gi|205352326|ref|YP_002226127.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|205272107|emb|CAR36960.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|326627376|gb|EGE33719.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9]
Length = 89
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 38/53 (71%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSRI 84
G++I+ LQA TQI E+TL+F+PKI+ VFI +I++ P++ + +V + S +
Sbjct: 32 GLIISILQAATQINEMTLSFIPKIVTVFIAIIVAGPWMLNLLLDYVRTLFSNL 84
>gi|46562154|ref|YP_009143.1| HrpO family type III secretion protein [Desulfovibrio vulgaris
str. Hildenborough]
gi|120586863|ref|YP_961208.1| HrpO family type III secretion protein [Desulfovibrio vulgaris
subsp. vulgaris DP4]
gi|46447691|gb|AAS94357.1| type III secretion protein, HrpO family [Desulfovibrio vulgaris
str. Hildenborough]
gi|120564277|gb|ABM30020.1| type III secretion protein, HrpO family [Desulfovibrio vulgaris
DP4]
gi|311235487|gb|ADP88340.1| type III secretion protein, HrpO family [Desulfovibrio vulgaris
RCH1]
Length = 86
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 44/67 (65%)
Query: 10 ARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
A A++ +L S P + A +GI+++ +QA+TQ+QE TLTF K+IAV +TL + +
Sbjct: 9 AVKALYLVLMLSMPPIIVASVVGIVLSLIQAITQLQEQTLTFGVKLIAVVLTLFLMGGWF 68
Query: 70 GGQISSF 76
GG++ F
Sbjct: 69 GGELLRF 75
>gi|170722843|ref|YP_001750531.1| flagellar biosynthesis protein FliQ [Pseudomonas putida W619]
gi|169760846|gb|ACA74162.1| flagellar biosynthetic protein FliQ [Pseudomonas putida W619]
Length = 89
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 46/71 (64%)
Query: 8 EIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAP 67
++ R A+W A ++ ++ +G+++A QA TQI E TL+F+P+++ + +TLI++ P
Sbjct: 8 DLFRDALWLTTLMVAILVVPSLLVGLVVAMFQAATQINEQTLSFLPRLLVMLVTLIVAGP 67
Query: 68 FIGGQISSFVT 78
++ + ++T
Sbjct: 68 WLTQKFMEYIT 78
>gi|329298604|ref|ZP_08255940.1| flagellar biosynthetic protein FliQ [Plautia stali symbiont]
Length = 89
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + + AM L +AP+L AM G+LI+ LQA TQI E TL+F+PKI+AV
Sbjct: 1 MTPESVMVMGQEAMRIALMMAAPLLLVAMVSGLLISILQAATQINEQTLSFIPKILAVAA 60
Query: 61 TLIISAPFI 69
T +++ P++
Sbjct: 61 TAVVAGPWM 69
>gi|238927448|ref|ZP_04659208.1| flagellar biosynthesis protein FliQ [Selenomonas flueggei ATCC
43531]
gi|238884730|gb|EEQ48368.1| flagellar biosynthesis protein FliQ [Selenomonas flueggei ATCC
43531]
Length = 89
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 53/83 (63%)
Query: 6 VLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIIS 65
V+++A+ A+ +L SAP+L + +G+L+A QA T IQE TL F+PKIIAVF+ ++I
Sbjct: 6 VIQLAQEALMVVLLVSAPMLGLGLIVGLLVAVFQATTSIQEQTLAFIPKIIAVFVAILIF 65
Query: 66 APFIGGQISSFVTLVLSRIQSSL 88
P++ + +VT V + L
Sbjct: 66 GPWMLRIMVEYVTNVFVNLPQYL 88
>gi|160902841|ref|YP_001568422.1| flagellar biosynthetic protein FliQ [Petrotoga mobilis SJ95]
gi|160360485|gb|ABX32099.1| flagellar biosynthetic protein FliQ [Petrotoga mobilis SJ95]
Length = 88
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 46/76 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E ++EI + L +P+L ++ +G++I+ QA+TQ+ E TLTF PKII F+
Sbjct: 1 MSEEVLIEIFENGIMLFLKVVSPILIISVAVGLIISIFQAVTQLHEQTLTFAPKIIITFL 60
Query: 61 TLIISAPFIGGQISSF 76
L++ +I +S F
Sbjct: 61 ALVLMFSWIMQNLSDF 76
>gi|78778199|ref|YP_394514.1| flagellar biosynthesis protein FliQ [Sulfurimonas denitrificans
DSM 1251]
gi|78498739|gb|ABB45279.1| Flagellar biosynthesis protein FliQ [Sulfurimonas denitrificans
DSM 1251]
Length = 88
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 41/64 (64%)
Query: 23 PVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLS 82
P L MF+G+ ++ QA TQI E+TL+F+PKI+ V I +I++ P++ + F T V +
Sbjct: 22 PGLLVGMFIGLAVSIFQATTQINEMTLSFIPKIVGVAIVIILTMPWMLNVMIDFTTEVFN 81
Query: 83 RIQS 86
+ +
Sbjct: 82 MMPT 85
>gi|238796942|ref|ZP_04640446.1| Flagellar biosynthetic protein fliQ [Yersinia mollaretii ATCC
43969]
gi|238719202|gb|EEQ11014.1| Flagellar biosynthetic protein fliQ [Yersinia mollaretii ATCC
43969]
Length = 83
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 33/38 (86%)
Query: 21 SAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAV 58
+AP+LF+A+F G++++ LQA TQI E+TL+F+PKI+ +
Sbjct: 15 AAPLLFAALFTGLIVSILQASTQINEMTLSFIPKILTI 52
>gi|332524235|ref|ZP_08400461.1| flagellar biosynthetic protein FliQ [Rubrivivax benzoatilyticus
JA2]
gi|332107570|gb|EGJ08794.1| flagellar biosynthetic protein FliQ [Rubrivivax benzoatilyticus
JA2]
Length = 81
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 34/49 (69%)
Query: 21 SAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
SAP+L M +G++++ LQA TQI E TL+FVPKI+A L + P++
Sbjct: 13 SAPILLVVMAIGLIVSVLQAATQINEATLSFVPKIVAAVAVLGFAGPWM 61
>gi|253688963|ref|YP_003018153.1| flagellar biosynthetic protein FliQ [Pectobacterium carotovorum
subsp. carotovorum PC1]
gi|251755541|gb|ACT13617.1| flagellar biosynthetic protein FliQ [Pectobacterium carotovorum
subsp. carotovorum PC1]
Length = 89
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 31/38 (81%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
G+ I+ LQA TQ+ E+TL+F+PKI+ VF TL+I+ P++
Sbjct: 32 GLTISLLQAATQVNEMTLSFIPKILTVFFTLVIAGPWM 69
>gi|293395592|ref|ZP_06639875.1| flagellar biosynthetic protein FliQ [Serratia odorifera DSM 4582]
gi|291421911|gb|EFE95157.1| flagellar biosynthetic protein FliQ [Serratia odorifera DSM 4582]
Length = 83
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 40/55 (72%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSRIQS 86
G++++ LQA TQI E+TL+F+PKI+AV T+II+ P++ + ++ ++ S + +
Sbjct: 26 GLVVSLLQAATQINEMTLSFIPKILAVVATIIIAGPWMLNLLLDYMRMLFSNLPN 80
>gi|50120648|ref|YP_049815.1| flagellar biosynthesis protein FliQ [Pectobacterium atrosepticum
SCRI1043]
gi|49611174|emb|CAG74620.1| flagellar biosynthetic protein [Pectobacterium atrosepticum
SCRI1043]
Length = 89
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 31/38 (81%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
G+ I+ LQA TQ+ E+TL+F+PKI+ VF TL+I+ P++
Sbjct: 32 GLTISLLQAATQVNEMTLSFIPKILTVFFTLVIAGPWM 69
>gi|51587299|emb|CAE53679.1| putative HrcS [Pseudomonas fluorescens bv. V]
Length = 87
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 47/77 (61%)
Query: 11 RAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIG 70
+ M ++ SAP L A+ +G+L + +QAL QIQ+ TL F K++AV ITL+++ +IG
Sbjct: 8 KQGMLLVVVLSAPPLIVAVIVGVLTSLVQALMQIQDQTLPFGIKLVAVGITLVLTGRWIG 67
Query: 71 GQISSFVTLVLSRIQSS 87
++ + L+ I S
Sbjct: 68 LELIQLINLMFDMIARS 84
>gi|254254351|ref|ZP_04947668.1| Type III secretory pathway component EscS [Burkholderia dolosa
AUO158]
gi|124898996|gb|EAY70839.1| Type III secretory pathway component EscS [Burkholderia dolosa
AUO158]
Length = 92
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 50/84 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + +L++ R A+ +L S P++ A G+ +A LQA+TQ+Q+ + ++IAV +
Sbjct: 1 MTSSTILDLTRQALMLVLLLSLPIVLIATVTGLAVAILQAVTQVQDANIGIAVRLIAVMV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
L++ + ++GG++ F L R+
Sbjct: 61 ALVLLSGWLGGEVLRFAQQALERM 84
>gi|259908769|ref|YP_002649125.1| Flagellar protein [Erwinia pyrifoliae Ep1/96]
gi|224964391|emb|CAX55900.1| Flagellar protein [Erwinia pyrifoliae Ep1/96]
gi|283478745|emb|CAY74661.1| Flagellar biosynthetic protein FliQ [Erwinia pyrifoliae DSM
12163]
gi|310767333|gb|ADP12283.1| Flagellar protein [Erwinia sp. Ejp617]
Length = 89
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 31/38 (81%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
G+LI+ LQA TQI E TL+F+PKI+AV T+I++ P++
Sbjct: 32 GLLISLLQAATQINEQTLSFIPKILAVVTTMIVAGPWM 69
>gi|308068669|ref|YP_003870274.1| flagellar biosynthetic protein fliQ [Paenibacillus polymyxa E681]
gi|310641560|ref|YP_003946318.1| flagellar biosynthetic protein fliq [Paenibacillus polymyxa SC2]
gi|305857948|gb|ADM69736.1| Flagellar biosynthetic protein fliQ [Paenibacillus polymyxa E681]
gi|309246510|gb|ADO56077.1| Flagellar biosynthetic protein FliQ [Paenibacillus polymyxa SC2]
Length = 89
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 51/84 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M ++ +A A++ +L SAP+L + +G++I+ QA TQIQE TL FVPKI+AV +
Sbjct: 1 MTSEFIISLAGQAVYIVLKVSAPMLILGLVVGLIISIFQATTQIQEQTLAFVPKIVAVLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
L++ P+I + F +L +
Sbjct: 61 ALLLFGPWILTTLVDFTYNILDNL 84
>gi|312962262|ref|ZP_07776754.1| flagellar biosynthetic protein FliQ [Pseudomonas fluorescens WH6]
gi|311283599|gb|EFQ62188.1| flagellar biosynthetic protein FliQ [Pseudomonas fluorescens WH6]
Length = 89
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 42/62 (67%)
Query: 8 EIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAP 67
++ R A+W A ++ ++ +G+L+A QA TQI E TL+F+P+++ + +TLI++ P
Sbjct: 8 DLFREALWLTTMMVAVLVVPSLLVGLLVAMFQAATQINEQTLSFLPRLLVMLVTLIVAGP 67
Query: 68 FI 69
++
Sbjct: 68 WL 69
>gi|320538197|ref|ZP_08038092.1| flagellar biosynthetic protein FliQ [Treponema phagedenis F0421]
gi|320145014|gb|EFW36735.1| flagellar biosynthetic protein FliQ [Treponema phagedenis F0421]
Length = 89
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 38/59 (64%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVF 59
M + V+ + R ++ ++ P+L +A+ +G+++A QA T IQE TLTFVPKI+ +
Sbjct: 1 MTQGTVITLMREGIFQVVILITPILLAALIVGLIVAIFQATTSIQEQTLTFVPKILTIL 59
>gi|91791410|ref|YP_561061.1| export protein FliQ [Shewanella denitrificans OS217]
gi|91713412|gb|ABE53338.1| export protein FliQ, family 3 [Shewanella denitrificans OS217]
Length = 82
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 45/70 (64%)
Query: 15 WTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQIS 74
W + P+L +A+ +G+LI+ Q +TQIQE+TLTFVPK+I V I + + + ++ I
Sbjct: 10 WVTSKLAMPILATALVVGLLISIFQVVTQIQEMTLTFVPKLIVVLIVVGMLSGWLLETIQ 69
Query: 75 SFVTLVLSRI 84
++ +S+I
Sbjct: 70 TYAITTISKI 79
>gi|292669766|ref|ZP_06603192.1| flagellar biosynthetic protein FliQ [Selenomonas noxia ATCC
43541]
gi|292648563|gb|EFF66535.1| flagellar biosynthetic protein FliQ [Selenomonas noxia ATCC
43541]
Length = 89
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 53/83 (63%)
Query: 6 VLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIIS 65
V+++A+ A+ +L SAP+L + +G+L+A QA T IQE TL F+PKIIAVF+ ++I
Sbjct: 6 VIQLAQEALMIVLLVSAPMLGLGLIVGLLVAVFQATTSIQEQTLAFIPKIIAVFVAILIF 65
Query: 66 APFIGGQISSFVTLVLSRIQSSL 88
P++ + +VT V + L
Sbjct: 66 GPWMLRIMVEYVTNVFVNLPQYL 88
>gi|229591839|ref|YP_002873958.1| flagellar biosynthesis protein FliQ [Pseudomonas fluorescens
SBW25]
gi|229363705|emb|CAY51088.1| flagellar biosynthetic protein FliQ [Pseudomonas fluorescens
SBW25]
Length = 89
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 42/62 (67%)
Query: 8 EIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAP 67
++ R A+W A ++ ++ +G+L+A QA TQI E TL+F+P+++ + +TLI++ P
Sbjct: 8 DLFREALWLTTVMVAVLVVPSLLVGLLVAMFQAATQINEQTLSFLPRLLVMLVTLIVAGP 67
Query: 68 FI 69
++
Sbjct: 68 WL 69
>gi|226326423|ref|ZP_03801941.1| hypothetical protein PROPEN_00271 [Proteus penneri ATCC 35198]
gi|225205206|gb|EEG87560.1| hypothetical protein PROPEN_00271 [Proteus penneri ATCC 35198]
Length = 84
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 48/70 (68%), Gaps = 2/70 (2%)
Query: 5 DVLEIARAAMW-TILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLI 63
D++ A A++ IL S+AP+ A F+G++I LQ +TQ+QE TL F K+++VF+ L+
Sbjct: 2 DMVYAANKAVYLVILLSAAPIAV-ATFVGLIIGLLQTITQVQEQTLPFGIKLVSVFVCLL 60
Query: 64 ISAPFIGGQI 73
I+ ++G +I
Sbjct: 61 ITMGWMGDKI 70
>gi|157736466|ref|YP_001489149.1| flagellar basal body protein FliQ [Arcobacter butzleri RM4018]
gi|315635626|ref|ZP_07890889.1| flagellar biosynthetic protein FliQ [Arcobacter butzleri JV22]
gi|157698320|gb|ABV66480.1| flagellar basal body protein FliQ [Arcobacter butzleri RM4018]
gi|315479923|gb|EFU70593.1| flagellar biosynthetic protein FliQ [Arcobacter butzleri JV22]
Length = 86
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 45/72 (62%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
D++ IA + IL P L +M +G++I+ A+TQ+ + +L+FVPK+I V ++I
Sbjct: 2 DLIGIAENTVKIILILGLPSLIVSMIIGLVISIFSAVTQVNDASLSFVPKMIFVSAFILI 61
Query: 65 SAPFIGGQISSF 76
S P++G + +F
Sbjct: 62 SLPWVGDHLETF 73
>gi|146307833|ref|YP_001188298.1| flagellar biosynthesis protein FliQ [Pseudomonas mendocina ymp]
gi|145576034|gb|ABP85566.1| flagellar biosynthetic protein FliQ [Pseudomonas mendocina ymp]
Length = 89
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 44/69 (63%)
Query: 8 EIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAP 67
++ R A+W I+ + ++ +G+++A QA TQI E TL+F+P+++ + ITLI + P
Sbjct: 8 DLFREALWLIVLIVGLAVVPSLLVGLVVAMFQAATQINEQTLSFLPRLMVMLITLIWAGP 67
Query: 68 FIGGQISSF 76
++ Q+ +
Sbjct: 68 WLVSQLMEY 76
>gi|56964018|ref|YP_175749.1| flagellar biosynthesis protein FliQ [Bacillus clausii KSM-K16]
gi|56910261|dbj|BAD64788.1| flagellar biosynthetic protein FliQ [Bacillus clausii KSM-K16]
Length = 89
Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 46/70 (65%)
Query: 6 VLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIIS 65
V +A++ +WT+L + P+L A+ LG++++ QA TQIQE TL F+PKI V + L+
Sbjct: 6 VTHLAQSGVWTVLIVAGPLLVVALALGLIVSIFQATTQIQEQTLAFIPKIAGVLLALVFF 65
Query: 66 APFIGGQISS 75
P++ Q++
Sbjct: 66 GPWMLSQLTE 75
>gi|317406211|gb|EFV86459.1| flagellar biosynthesis protein FliQ [Achromobacter xylosoxidans
C54]
Length = 89
Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 51/84 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + AM L+ + P+L + +G++I+ QA TQI E+TL+F+PK++A+
Sbjct: 1 MTAETVMTMTYQAMKIALAMAGPLLVITLIVGLVISIFQAATQINEMTLSFIPKLLAMCG 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
L++ P++ G + ++ ++ +I
Sbjct: 61 VLVLLGPWLIGIMVDYIRQLIGQI 84
>gi|300871794|ref|YP_003786667.1| putative flagellar protein FliO/FliZ [Brachyspira pilosicoli
95/1000]
gi|300689495|gb|ADK32166.1| putative flagellar protein FliO/FliZ [Brachyspira pilosicoli
95/1000]
Length = 89
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 49/76 (64%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN+ ++ + + +WT + SAPVL ++ +G++I+ +QA T IQE TLTFVPK+IA+
Sbjct: 1 MNDTSIIVLVQQTLWTFMLLSAPVLGVSIIVGLIISIIQATTSIQEQTLTFVPKMIAMLA 60
Query: 61 TLIISAPFIGGQISSF 76
+ A ++ IS F
Sbjct: 61 VIYFLASWMINYISGF 76
>gi|292487981|ref|YP_003530858.1| flagellar biosynthetic protein FliQ [Erwinia amylovora CFBP1430]
gi|292899201|ref|YP_003538570.1| flagellar biosynthetic protein FliQ [Erwinia amylovora ATCC
49946]
gi|291199049|emb|CBJ46160.1| flagellar biosynthetic protein FliQ [Erwinia amylovora ATCC
49946]
gi|291553405|emb|CBA20450.1| Flagellar biosynthetic protein FliQ [Erwinia amylovora CFBP1430]
gi|312172106|emb|CBX80363.1| Flagellar biosynthetic protein FliQ [Erwinia amylovora ATCC
BAA-2158]
Length = 89
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 31/38 (81%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
G+LI+ LQA TQI E TL+F+PKI+AV T++++ P++
Sbjct: 32 GLLISLLQAATQINEQTLSFIPKILAVVTTMVVAGPWM 69
>gi|238788323|ref|ZP_04632117.1| Flagellar biosynthetic protein FliQ [Yersinia frederiksenii ATCC
33641]
gi|238723569|gb|EEQ15215.1| Flagellar biosynthetic protein FliQ [Yersinia frederiksenii ATCC
33641]
Length = 89
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 32/38 (84%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
G+ ++ LQA TQI E+TL+F+PKI++VF T++I+ P++
Sbjct: 32 GLTVSLLQAATQINEMTLSFIPKILSVFATMVIAGPWM 69
>gi|51587303|emb|CAE53682.1| putative HrcS [Pseudomonas fluorescens]
Length = 87
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 49/83 (59%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
D + + + M ++ SAP L A+ +G+L + +QAL QIQ+ TL F K++AV ITL++
Sbjct: 2 DPIMLFKQGMLLVVVLSAPPLIVAVIVGVLTSLIQALMQIQDQTLPFGIKLVAVGITLVL 61
Query: 65 SAPFIGGQISSFVTLVLSRIQSS 87
+ +IG ++ + L + S
Sbjct: 62 TGRWIGLELIQLINLTFDMVARS 84
>gi|260574403|ref|ZP_05842407.1| export protein FliQ family 3 [Rhodobacter sp. SW2]
gi|259023299|gb|EEW26591.1| export protein FliQ family 3 [Rhodobacter sp. SW2]
Length = 88
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 46/76 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M E+++ + R +W + SAP+L A+ G+++ QALT +QE+TLTFVPK+ A+ +
Sbjct: 1 MTESEIYDTLRQGLWIAVLISAPLLTVALVAGVVVGLFQALTSVQEMTLTFVPKVGAMLV 60
Query: 61 TLIISAPFIGGQISSF 76
+S F+ + F
Sbjct: 61 VFWVSMSFMTSTLVGF 76
>gi|258592487|emb|CBE68796.1| Flagellar biosynthetic protein fliQ [NC10 bacterium 'Dutch
sediment']
Length = 89
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 34/47 (72%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVT 78
G+LI+ LQA+T IQE TL FVPKI+ VF+ LI+ P++ + SF T
Sbjct: 32 GLLISILQAVTSIQEQTLAFVPKIVVVFVALILFLPWMMRTMLSFTT 78
>gi|51587279|emb|CAE53664.1| putative HrcS [Pseudomonas fluorescens bv. V]
gi|51587315|emb|CAE53691.1| putative HrcS [Pseudomonas fluorescens bv. V]
Length = 87
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 46/77 (59%)
Query: 11 RAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIG 70
+ M ++ SAP L A+ +G+L + +QAL Q+Q+ TL F K++AV ITLI++ +IG
Sbjct: 8 KQGMLLVVVLSAPPLIVAVVVGVLTSLVQALMQVQDQTLPFGIKLVAVGITLIMTGRWIG 67
Query: 71 GQISSFVTLVLSRIQSS 87
++ + L I S
Sbjct: 68 VELIQLINLTFDMIGRS 84
>gi|332297775|ref|YP_004439697.1| flagellar biosynthetic protein FliQ [Treponema brennaborense DSM
12168]
gi|332180878|gb|AEE16566.1| flagellar biosynthetic protein FliQ [Treponema brennaborense DSM
12168]
Length = 89
Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 36/54 (66%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPK 54
M+ D++ + R ++ IL APVL +A+ +G+++A QA T IQE TLTF PK
Sbjct: 1 MSLGDIVTLIRDGIFQILILVAPVLGAALIIGLIVAIFQATTSIQEQTLTFAPK 54
>gi|203284195|ref|YP_002221935.1| flagellar biosynthesis protein [Borrelia duttonii Ly]
gi|201083638|gb|ACH93229.1| flagellar biosynthesis protein [Borrelia duttonii Ly]
Length = 87
Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 48/66 (72%)
Query: 21 SAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLV 80
SAP+L +A+ +G+L++ QA+T IQ+ TL+F+PKII + + L+I P+I ++ F LV
Sbjct: 21 SAPMLITALIVGLLVSIFQAVTSIQDQTLSFIPKIIIILLVLVIFGPWILKKLMQFTFLV 80
Query: 81 LSRIQS 86
++IQ+
Sbjct: 81 FNQIQN 86
>gi|330502777|ref|YP_004379646.1| flagellar biosynthesis protein FliQ [Pseudomonas mendocina NK-01]
gi|328917063|gb|AEB57894.1| flagellar biosynthesis protein FliQ [Pseudomonas mendocina NK-01]
Length = 89
Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 47/77 (61%)
Query: 8 EIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAP 67
++ R A+W I+ + ++ +G+++A QA TQI E TL+F+P+++ + ITLI + P
Sbjct: 8 DLFREALWLIVLIVGLAVVPSLVVGLIVAMFQAATQINEQTLSFLPRLMVMLITLIWAGP 67
Query: 68 FIGGQISSFVTLVLSRI 84
++ Q+ + ++ I
Sbjct: 68 WLVSQLMEYTQTLIQNI 84
>gi|188534131|ref|YP_001907928.1| Flagellar protein [Erwinia tasmaniensis Et1/99]
gi|188029173|emb|CAO97045.1| Flagellar protein [Erwinia tasmaniensis Et1/99]
Length = 89
Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 31/38 (81%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
G+LI+ LQA TQI E TL+F+PKI+AV T++++ P++
Sbjct: 32 GLLISLLQAATQINEQTLSFIPKILAVVTTMVVAGPWM 69
>gi|313895831|ref|ZP_07829385.1| flagellar biosynthetic protein FliQ [Selenomonas sp. oral taxon
137 str. F0430]
gi|320529417|ref|ZP_08030505.1| flagellar biosynthetic protein FliQ [Selenomonas artemidis F0399]
gi|312975256|gb|EFR40717.1| flagellar biosynthetic protein FliQ [Selenomonas sp. oral taxon
137 str. F0430]
gi|320138383|gb|EFW30277.1| flagellar biosynthetic protein FliQ [Selenomonas artemidis F0399]
Length = 89
Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 53/83 (63%)
Query: 6 VLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIIS 65
V+++A+ A+ +L SAP+L + +G+L+A QA T IQE TL F+PKI+AVF+ ++I
Sbjct: 6 VIQLAQEALMIVLLVSAPMLGLGLIVGLLVAVFQATTSIQEQTLAFIPKIVAVFVAILIF 65
Query: 66 APFIGGQISSFVTLVLSRIQSSL 88
P++ + +VT V + L
Sbjct: 66 GPWMLRIMVEYVTNVFVNLPQYL 88
>gi|70729044|ref|YP_258778.1| flagellar biosynthesis protein FliQ [Pseudomonas fluorescens
Pf-5]
gi|68343343|gb|AAY90949.1| flagellar biosynthetic protein FliQ [Pseudomonas fluorescens
Pf-5]
Length = 89
Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 42/62 (67%)
Query: 8 EIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAP 67
++ R A+W A ++ ++ +G+++A QA TQI E TL+F+P+++ + +TLI++ P
Sbjct: 8 DLFREALWLTTMMVAVLVVPSLLVGLMVAMFQAATQINEQTLSFLPRLLVMLVTLIVAGP 67
Query: 68 FI 69
++
Sbjct: 68 WL 69
>gi|283785719|ref|YP_003365584.1| flagellar biosynthesis protein FliQ [Citrobacter rodentium
ICC168]
gi|282949173|emb|CBG88781.1| flagellar biosynthesis protein FliQ [Citrobacter rodentium
ICC168]
Length = 89
Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 31/38 (81%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
G+ I+ LQA TQI E+TL+F+PKI+AVF +II+ P++
Sbjct: 32 GLTISILQAATQINEMTLSFIPKIVAVFTAIIIAGPWM 69
>gi|51587291|emb|CAE53673.1| putative HrcS [Pseudomonas fluorescens]
Length = 87
Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 47/77 (61%)
Query: 11 RAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIG 70
+ M ++ SAP L A+ +G+L + +QAL Q+Q+ TL F K++AV +TL+++ +IG
Sbjct: 8 KQGMLLVVVLSAPPLIVAVIVGVLTSLVQALMQVQDQTLPFGVKLVAVGVTLVLTGRWIG 67
Query: 71 GQISSFVTLVLSRIQSS 87
++ + L+ I S
Sbjct: 68 VELIQLINLMFEMIARS 84
>gi|332526332|ref|ZP_08402459.1| hypothetical protein RBXJA2T_10721 [Rubrivivax benzoatilyticus
JA2]
gi|332110469|gb|EGJ10792.1| hypothetical protein RBXJA2T_10721 [Rubrivivax benzoatilyticus
JA2]
Length = 91
Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 49/76 (64%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ ++ +++ A+W +L SAP + A +G+LIA +QA TQIQE T + K+ A+ +
Sbjct: 1 MSGSEAMQLTLQALWLVLLLSAPPVLVAAVVGLLIAIVQAATQIQEQTFQYAAKLFAIVL 60
Query: 61 TLIISAPFIGGQISSF 76
T+ ++A +GG + +F
Sbjct: 61 TIFVTAALLGGTLYAF 76
>gi|229588262|ref|YP_002870381.1| putative type III secretion membrane protein [Pseudomonas
fluorescens SBW25]
gi|15042143|gb|AAK81924.1|AF292566_8 RscS [Pseudomonas fluorescens]
gi|229360128|emb|CAY46985.1| putative type III secretion membrane protein [Pseudomonas
fluorescens SBW25]
Length = 87
Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 11 RAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIG 70
+ M ++ SAP L A+ +G++ + +QAL Q+Q+ TL F K++AV ITLI++ +IG
Sbjct: 8 KQGMLLVVVLSAPPLLVAVVVGVMTSLVQALMQVQDQTLPFGIKLVAVGITLIMTGRWIG 67
Query: 71 GQISSFVTLVLSRIQSS 87
++ + L I S
Sbjct: 68 VELIQLINLTFDMIGRS 84
>gi|312958829|ref|ZP_07773348.1| type III secretion system rscS [Pseudomonas fluorescens WH6]
gi|311286599|gb|EFQ65161.1| type III secretion system rscS [Pseudomonas fluorescens WH6]
Length = 87
Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 11 RAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIG 70
+ M ++ SAP L A+ +G+L + +QAL Q+Q+ TL F K++AV +TLI++ +IG
Sbjct: 8 KQGMLLVVVLSAPPLIVAVVVGVLTSLVQALMQVQDQTLPFGVKLVAVGVTLIMTGRWIG 67
Query: 71 GQISSFVTLVLSRIQSS 87
++ + L I S
Sbjct: 68 VELIQLINLTFEMIGRS 84
>gi|15615004|ref|NP_243307.1| flagellar biosynthesis protein FliQ [Bacillus halodurans C-125]
gi|10175061|dbj|BAB06160.1| flagellar protein required for flagellar formation [Bacillus
halodurans C-125]
Length = 89
Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 51/80 (63%)
Query: 6 VLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIIS 65
++ IA +WT+L + P+L A+ LG+ ++ QA TQIQE TL F+PKI+ V ++L++
Sbjct: 6 IIGIAERGVWTVLLVAGPLLLVALGLGLFVSIFQATTQIQEQTLAFIPKIVGVLVSLVLF 65
Query: 66 APFIGGQISSFVTLVLSRIQ 85
P++ Q+ +F + + +
Sbjct: 66 GPWMLSQLLNFAYSIFNNLH 85
>gi|77918769|ref|YP_356584.1| flagellar biosynthetic protein FliQ [Pelobacter carbinolicus DSM
2380]
gi|77544852|gb|ABA88414.1| flagellar biosynthetic protein FliQ [Pelobacter carbinolicus DSM
2380]
Length = 89
Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 36/53 (67%)
Query: 34 LIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSRIQS 86
+++ QA TQI E T+TF+PKI+AVF+TL+I AP++ + +F + I +
Sbjct: 34 MVSIFQAATQINEQTMTFIPKIVAVFVTLLICAPWMIRTLLTFTKNIFGNIPN 86
>gi|321399634|emb|CBJ44641.1| putative type III secretion system protein HrcS [Pseudomonas sp.
MTE-J5-708]
Length = 84
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 43/66 (65%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
D L + + M ++ SAP L A+ +G+L + +QAL QIQ+ TL F K++AV +TL++
Sbjct: 2 DALTLFKEGMMLVVLLSAPPLIVAVVVGVLTSLVQALMQIQDQTLPFGIKLVAVGLTLLV 61
Query: 65 SAPFIG 70
+ +IG
Sbjct: 62 TGRWIG 67
>gi|150019067|ref|YP_001311321.1| export protein FliQ [Clostridium beijerinckii NCIMB 8052]
gi|149905532|gb|ABR36365.1| export protein FliQ, family 3 [Clostridium beijerinckii NCIMB
8052]
Length = 89
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 29/37 (78%)
Query: 21 SAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIA 57
SAP+L + LG+ I+ +QA TQIQE TLTFVPK+IA
Sbjct: 21 SAPILIVVLVLGLAISIIQATTQIQEQTLTFVPKLIA 57
>gi|167584014|ref|ZP_02376402.1| type III secretion inner membrane protein SctS [Burkholderia
ubonensis Bu]
Length = 87
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 47/82 (57%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M D++ + M L S PV+ A G+ I+FLQA+T +QE ++++ K++AV +
Sbjct: 1 METDDLIRLTSQGMMLCLYISLPVVLVAAASGLAISFLQAITSLQEQSISYGVKLVAVTV 60
Query: 61 TLIISAPFIGGQISSFVTLVLS 82
T+ I+ P+ +I F +LS
Sbjct: 61 TVAIAGPWAAAEILHFAQQLLS 82
>gi|296162491|ref|ZP_06845282.1| type III secretion protein, HrpO family [Burkholderia sp. Ch1-1]
gi|295887304|gb|EFG67131.1| type III secretion protein, HrpO family [Burkholderia sp. Ch1-1]
Length = 91
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 41/67 (61%)
Query: 21 SAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLV 80
S P L A +G+LI LQ++TQIQ+ +L + KII V LII+AP+ ++S F+ V
Sbjct: 22 SLPALAVATAVGLLIGLLQSVTQIQDQSLPYGAKIICVGGVLIITAPWANRELSRFLAHV 81
Query: 81 LSRIQSS 87
+ I +
Sbjct: 82 FTYIAAG 88
>gi|330812429|ref|YP_004356891.1| type III secretion protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|51587295|emb|CAE53676.1| putative HrcS [Pseudomonas fluorescens bv. I]
gi|312597802|gb|ADQ89917.1| RscS [Pseudomonas fluorescens]
gi|315140169|gb|ADT81059.1| RscS [Pseudomonas fluorescens]
gi|315140173|gb|ADT81062.1| RscS [Pseudomonas fluorescens]
gi|315140177|gb|ADT81065.1| RscS [Pseudomonas fluorescens]
gi|315140181|gb|ADT81068.1| RscS [Pseudomonas fluorescens]
gi|315140185|gb|ADT81071.1| RscS [Pseudomonas fluorescens]
gi|315140189|gb|ADT81074.1| RscS [Pseudomonas fluorescens]
gi|315140197|gb|ADT81080.1| RscS [Pseudomonas fluorescens]
gi|315140201|gb|ADT81083.1| RscS [Pseudomonas fluorescens]
gi|315140205|gb|ADT81086.1| RscS [Pseudomonas fluorescens]
gi|315140209|gb|ADT81089.1| RscS [Pseudomonas fluorescens]
gi|315140213|gb|ADT81092.1| RscS [Pseudomonas fluorescens]
gi|315140217|gb|ADT81095.1| RscS [Pseudomonas fluorescens]
gi|315140221|gb|ADT81098.1| RscS [Pseudomonas fluorescens]
gi|315140225|gb|ADT81101.1| RscS [Pseudomonas fluorescens]
gi|315140229|gb|ADT81104.1| RscS [Pseudomonas fluorescens]
gi|315140233|gb|ADT81107.1| RscS [Pseudomonas fluorescens]
gi|315140241|gb|ADT81113.1| RscS [Pseudomonas fluorescens]
gi|315140245|gb|ADT81116.1| RscS [Pseudomonas fluorescens]
gi|327380537|gb|AEA71887.1| putative type III secretion protein [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
Length = 84
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 43/66 (65%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
D L + + M ++ SAP L A+ +G+L + +QAL QIQ+ TL F K++AV +TL++
Sbjct: 2 DALTLFKEGMLLVVLLSAPPLIVAVIVGVLTSLVQALMQIQDQTLPFGIKLVAVGLTLLV 61
Query: 65 SAPFIG 70
+ +IG
Sbjct: 62 TGRWIG 67
>gi|51587319|emb|CAE53694.1| putative HrcS [Pseudomonas fluorescens]
Length = 84
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 43/66 (65%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
D L + + M ++ SAP L A+ +G+L + +QAL QIQ+ TL F K++AV +TL++
Sbjct: 2 DALTLFKEGMLLVVLLSAPPLIVAVIVGVLTSLVQALMQIQDQTLPFGIKLVAVGLTLLV 61
Query: 65 SAPFIG 70
+ +IG
Sbjct: 62 TGRWIG 67
>gi|51587255|emb|CAE53646.1| putative HrcS [Pseudomonas salomonii]
Length = 87
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 11 RAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIG 70
+ M ++ SAP L A+ +G+L + +QAL Q+Q+ TL F K++AV ITL+++ +IG
Sbjct: 8 KQGMLLVVVLSAPPLIVAVVVGVLTSLVQALMQVQDQTLPFGIKLVAVGITLVMTGRWIG 67
Query: 71 GQISSFVTLVLSRIQSS 87
++ + L I S
Sbjct: 68 VELIQLINLTFEMISRS 84
>gi|312884594|ref|ZP_07744298.1| HrpO family type III secretion protein [Vibrio caribbenthicus
ATCC BAA-2122]
gi|309367906|gb|EFP95454.1| HrpO family type III secretion protein [Vibrio caribbenthicus
ATCC BAA-2122]
Length = 89
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 52/84 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEA ++ +W +L S PV+ A +GI+++ QALTQIQ+ +L F+ K++AV I
Sbjct: 1 MNEAVIVHFTSELLWLVLILSLPVVVVASVVGIMVSLFQALTQIQDQSLQFLIKLVAVCI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
T+ +S ++G + ++ L +I
Sbjct: 61 TIAVSYHWMGSTLLNYAGLAFDQI 84
>gi|254436897|ref|ZP_05050391.1| flagellar biosynthetic protein FliQ [Octadecabacter antarcticus
307]
gi|198252343|gb|EDY76657.1| flagellar biosynthetic protein FliQ [Octadecabacter antarcticus
307]
Length = 88
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 48/79 (60%)
Query: 7 LEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISA 66
+E R A W I+ ++ P+L A+ +G++I +QA T I E+TL+FVPK++ V + +
Sbjct: 7 IESLRLAYWQIIIAAGPILGVALAVGLVIGIIQAATSINEMTLSFVPKLVIVLAAMAGFS 66
Query: 67 PFIGGQISSFVTLVLSRIQ 85
F+ +++ + + +I+
Sbjct: 67 TFMMQEMTDYFASIFEQIR 85
>gi|311695202|gb|ADP98075.1| flagellar biosynthetic protein FliQ [marine bacterium HP15]
Length = 89
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 44/69 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V++I R A+W I+ ++ ++ + +G++++ QA TQI E TL+F+P+++ I
Sbjct: 1 MTPETVIDILREALWMIVLLASIIIGPGLVIGLVVSTFQAATQINEQTLSFLPRLLVTLI 60
Query: 61 TLIISAPFI 69
+I+ P++
Sbjct: 61 VIIVWGPWM 69
>gi|167585023|ref|ZP_02377411.1| flagellar biosynthesis protein FliQ [Burkholderia ubonensis Bu]
Length = 90
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 46/69 (66%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ +A AM L SAP+L A+ +G+L++ QA TQI E TL+F+PK++AV
Sbjct: 1 MTPEQVMTLAHHAMVVGLLVSAPLLLVALAVGLLVSLFQAATQINESTLSFIPKLLAVLA 60
Query: 61 TLIISAPFI 69
TL+I+ P++
Sbjct: 61 TLVIAGPWM 69
>gi|82470757|gb|ABB77409.1| HrcS [Pantoea stewartii subsp. stewartii]
Length = 86
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 44/66 (66%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
+++ + + AM ++ SAP L A+ +G+L++ LQA+ Q+Q+ TL F K++AV I L +
Sbjct: 2 EIMNLFKQAMLLVVLLSAPPLLVAVIVGVLVSLLQAVMQLQDQTLPFAIKLVAVGIALAL 61
Query: 65 SAPFIG 70
S +IG
Sbjct: 62 SGRWIG 67
>gi|321399614|emb|CBJ44626.1| putative type III secretion system protein HrcS [Pseudomonas sp.
MTE-25-201]
gi|321399638|emb|CBJ44644.1| putative type III secretion system protein HrcS [Pseudomonas sp.
MTR-25-321]
gi|321399646|emb|CBJ44650.1| putative type III secretion system protein HrcS [Pseudomonas sp.
MTR-48-521]
gi|321399650|emb|CBJ44653.1| putative type III secretion system protein HrcS [Pseudomonas sp.
MTR-48-522]
gi|321399662|emb|CBJ44662.1| putative type III secretion system protein HrcS [Pseudomonas sp.
MTR-J5-522]
Length = 84
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 43/66 (65%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
D L + + M ++ SAP L A+ +G+L + +QAL QIQ+ TL F K++AV +TL++
Sbjct: 2 DALTLFKEGMLLVVLLSAPPLIVAVVVGVLTSLVQALMQIQDQTLPFGIKLVAVGLTLLV 61
Query: 65 SAPFIG 70
+ +IG
Sbjct: 62 TGRWIG 67
>gi|188997534|ref|YP_001931785.1| flagellar biosynthetic protein FliQ [Sulfurihydrogenibium sp.
YO3AOP1]
gi|188932601|gb|ACD67231.1| flagellar biosynthetic protein FliQ [Sulfurihydrogenibium sp.
YO3AOP1]
Length = 89
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 39/64 (60%)
Query: 21 SAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLV 80
+ PV+ +G+LI+ QA TQI E+T+TFVPKIIA I LII ++ ++ + V
Sbjct: 21 AGPVILITFIVGLLISIFQAATQINEMTITFVPKIIAAVIGLIIFGSWMTTKLVDYTKEV 80
Query: 81 LSRI 84
L I
Sbjct: 81 LMMI 84
>gi|51894126|ref|YP_076817.1| flagellar biosynthetic protein [Symbiobacterium thermophilum IAM
14863]
gi|51857815|dbj|BAD41973.1| flagellar biosynthetic protein [Symbiobacterium thermophilum IAM
14863]
Length = 89
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 46/76 (60%)
Query: 7 LEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISA 66
L++A+ A+ L +APV+ ++ +G++I+ QA TQ+ E +L FVPKI+A L++
Sbjct: 7 LDLAQEAVRVALYVAAPVIGLSLLVGLIISLFQATTQVHEPSLQFVPKILAAVAGLVVFG 66
Query: 67 PFIGGQISSFVTLVLS 82
P++ + F V+
Sbjct: 67 PWMLTTLMDFARRVMD 82
>gi|300311364|ref|YP_003775456.1| flagellar biosynthesis protein FliQ [Herbaspirillum seropedicae
SmR1]
gi|300074149|gb|ADJ63548.1| flagellar biosynthetic FliQ protein [Herbaspirillum seropedicae
SmR1]
Length = 89
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 52/84 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + R AM L +AP+L +A+ +G+L++ QA TQI E TL F+PK++ VF+
Sbjct: 1 MTPESVMTMGRQAMEITLLIAAPMLLTALLIGLLVSIFQAATQINEQTLAFIPKLLGVFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
+I++ P+I I ++ + S I
Sbjct: 61 AMIVAGPWILTVIVDYMHTMFSGI 84
>gi|300310130|ref|YP_003774222.1| type III secretion HrcS protein [Herbaspirillum seropedicae SmR1]
gi|300072915|gb|ADJ62314.1| type III secretion HrcS protein [Herbaspirillum seropedicae SmR1]
Length = 87
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%)
Query: 4 ADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLI 63
AD + + ++W + SAP L A G+ ++ +QA+TQIQ+ TL +V K++AV +TL
Sbjct: 2 ADTINFFQQSLWMAIMMSAPPLLIATLCGLGVSLIQAVTQIQDQTLPYVVKLVAVAVTLA 61
Query: 64 ISAPFIG 70
+IG
Sbjct: 62 SMGRWIG 68
>gi|269138237|ref|YP_003294937.1| type III secretion apparatus [Edwardsiella tarda EIB202]
gi|55981989|gb|AAV69419.1| EsaS [Edwardsiella tarda]
gi|61743014|gb|AAX55234.1| EsaS [Edwardsiella tarda]
gi|267983897|gb|ACY83726.1| type III secretion apparatus [Edwardsiella tarda EIB202]
gi|304558280|gb|ADM40944.1| EsaS [Edwardsiella tarda FL6-60]
Length = 89
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 50/76 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +A ++++A +W +L S PV+ A +G+L+ +QALTQIQ+ T++F K++A +
Sbjct: 1 MGKAQLVQLASELLWLVLILSLPVVLVASLVGVLVGLVQALTQIQDQTVSFAIKLVAASV 60
Query: 61 TLIISAPFIGGQISSF 76
TL ++ ++G + S+
Sbjct: 61 TLALTYHWMGSALFSY 76
>gi|304438441|ref|ZP_07398381.1| flagellar biosynthetic protein FliQ [Selenomonas sp. oral taxon
149 str. 67H29BP]
gi|304368524|gb|EFM22209.1| flagellar biosynthetic protein FliQ [Selenomonas sp. oral taxon
149 str. 67H29BP]
Length = 89
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 46/64 (71%)
Query: 6 VLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIIS 65
V+++A+ A+ +L SAP+L + +G+L+A QA T IQE TL F+PKIIAVF+ ++I
Sbjct: 6 VIQLAQEALMIVLLVSAPMLGLGLIVGLLVAVFQATTSIQEQTLAFIPKIIAVFVAILIF 65
Query: 66 APFI 69
P++
Sbjct: 66 GPWM 69
>gi|160896098|ref|YP_001561680.1| flagellar biosynthetic protein FliQ [Delftia acidovorans SPH-1]
gi|160361682|gb|ABX33295.1| flagellar biosynthetic protein FliQ [Delftia acidovorans SPH-1]
Length = 89
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M VL R A+ +L S PVL + +G+ ++ QA+TQ+ E TL FVPK+I+ +
Sbjct: 1 MTSQYVLTFGREALTLLLMISMPVLGVVLAVGLAVSVFQAVTQVHEATLAFVPKLISAVL 60
Query: 61 TLIISAPFIGGQISSFV 77
I+ P++ + F+
Sbjct: 61 VFAIAGPWMLSTLVDFI 77
>gi|312148034|gb|ADQ30693.1| flagellar biosynthetic protein FliQ [Borrelia burgdorferi JD1]
Length = 87
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 48/66 (72%)
Query: 21 SAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLV 80
SAP+L A+ +G+LI+ QA+T IQ+ TL+F+PKII + +T++I P+I ++ F ++
Sbjct: 21 SAPMLIIALIVGLLISIFQAITSIQDQTLSFIPKIIVILLTIVIFGPWILNKLMQFTYMI 80
Query: 81 LSRIQS 86
S++Q+
Sbjct: 81 FSQLQN 86
>gi|15594619|ref|NP_212408.1| flagellar biosynthesis protein (fliQ) [Borrelia burgdorferi B31]
gi|195941372|ref|ZP_03086754.1| flagellar biosynthesis protein [Borrelia burgdorferi 80a]
gi|216264187|ref|ZP_03436179.1| flagellar biosynthetic protein FliQ [Borrelia burgdorferi 156a]
gi|218249705|ref|YP_002374797.1| flagellar biosynthetic protein FliQ [Borrelia burgdorferi ZS7]
gi|221217705|ref|ZP_03589173.1| flagellar biosynthetic protein FliQ [Borrelia burgdorferi 72a]
gi|223888945|ref|ZP_03623536.1| flagellar biosynthetic protein FliQ [Borrelia burgdorferi 64b]
gi|224533130|ref|ZP_03673730.1| flagellar biosynthetic protein FliQ [Borrelia burgdorferi
WI91-23]
gi|224533782|ref|ZP_03674370.1| flagellar biosynthetic protein FliQ [Borrelia burgdorferi
CA-11.2a]
gi|225549140|ref|ZP_03770115.1| flagellar biosynthetic protein FliQ [Borrelia burgdorferi 94a]
gi|225550226|ref|ZP_03771186.1| flagellar biosynthetic protein FliQ [Borrelia burgdorferi 118a]
gi|226320575|ref|ZP_03796135.1| flagellar biosynthetic protein FliQ [Borrelia burgdorferi 29805]
gi|226321592|ref|ZP_03797118.1| flagellar biosynthetic protein FliQ [Borrelia burgdorferi Bol26]
gi|3023774|sp|Q44906|FLIQ_BORBU RecName: Full=Flagellar biosynthetic protein FliQ
gi|1165259|gb|AAA85598.1| FliQ [Borrelia burgdorferi]
gi|1185060|gb|AAB58969.1| flagellar export protein [Borrelia burgdorferi]
gi|2688192|gb|AAC66674.1| flagellar biosynthesis protein (fliQ) [Borrelia burgdorferi B31]
gi|215980660|gb|EEC21467.1| flagellar biosynthetic protein FliQ [Borrelia burgdorferi 156a]
gi|218164893|gb|ACK74954.1| flagellar biosynthetic protein FliQ [Borrelia burgdorferi ZS7]
gi|221192382|gb|EEE18601.1| flagellar biosynthetic protein FliQ [Borrelia burgdorferi 72a]
gi|223885761|gb|EEF56860.1| flagellar biosynthetic protein FliQ [Borrelia burgdorferi 64b]
gi|224511857|gb|EEF82258.1| flagellar biosynthetic protein FliQ [Borrelia burgdorferi
WI91-23]
gi|224513075|gb|EEF83438.1| flagellar biosynthetic protein FliQ [Borrelia burgdorferi
CA-11.2a]
gi|225369338|gb|EEG98791.1| flagellar biosynthetic protein FliQ [Borrelia burgdorferi 118a]
gi|225370366|gb|EEG99804.1| flagellar biosynthetic protein FliQ [Borrelia burgdorferi 94a]
gi|226232781|gb|EEH31534.1| flagellar biosynthetic protein FliQ [Borrelia burgdorferi Bol26]
gi|226233994|gb|EEH32715.1| flagellar biosynthetic protein FliQ [Borrelia burgdorferi 29805]
gi|312149214|gb|ADQ29285.1| flagellar biosynthetic protein FliQ [Borrelia burgdorferi N40]
Length = 87
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 47/66 (71%)
Query: 21 SAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLV 80
SAP+L A+ +G+LI+ QA+T IQ+ TL+F+PKII + + ++I P+I ++ F ++
Sbjct: 21 SAPMLIIALIVGLLISIFQAITSIQDQTLSFIPKIIVILLVIVIFGPWILNKLMQFTYMI 80
Query: 81 LSRIQS 86
S++Q+
Sbjct: 81 FSQLQN 86
>gi|171322879|ref|ZP_02911584.1| type III secretion protein, HrpO family [Burkholderia ambifaria
MEX-5]
gi|171091753|gb|EDT37283.1| type III secretion protein, HrpO family [Burkholderia ambifaria
MEX-5]
Length = 87
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 48/82 (58%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ D++ + M L S PV+ A G+ I+FLQA+T +QE ++++ K++AV +
Sbjct: 1 MDIDDLIRLTSQGMMLCLYISLPVVLVAAASGLAISFLQAITSLQEQSISYGVKLVAVTV 60
Query: 61 TLIISAPFIGGQISSFVTLVLS 82
T+ I+ P+ +I F +LS
Sbjct: 61 TVAIAGPWAAAEILHFAQQLLS 82
>gi|15596644|ref|NP_250138.1| flagellar biosynthesis protein FliQ [Pseudomonas aeruginosa PAO1]
gi|107100881|ref|ZP_01364799.1| hypothetical protein PaerPA_01001911 [Pseudomonas aeruginosa
PACS2]
gi|116049392|ref|YP_791805.1| flagellar biosynthesis protein FliQ [Pseudomonas aeruginosa
UCBPP-PA14]
gi|218892680|ref|YP_002441549.1| flagellar biosynthesis protein FliQ [Pseudomonas aeruginosa
LESB58]
gi|254234546|ref|ZP_04927869.1| flagellar biosynthetic protein FliQ [Pseudomonas aeruginosa
C3719]
gi|254239797|ref|ZP_04933119.1| flagellar biosynthetic protein FliQ [Pseudomonas aeruginosa 2192]
gi|296390186|ref|ZP_06879661.1| flagellar biosynthesis protein FliQ [Pseudomonas aeruginosa PAb1]
gi|313106446|ref|ZP_07792677.1| flagellar biosynthetic protein FliQ [Pseudomonas aeruginosa
39016]
gi|9947398|gb|AAG04836.1|AE004574_7 flagellar biosynthetic protein FliQ [Pseudomonas aeruginosa PAO1]
gi|115584613|gb|ABJ10628.1| flagellar biosynthetic protein FliQ [Pseudomonas aeruginosa
UCBPP-PA14]
gi|126166477|gb|EAZ51988.1| flagellar biosynthetic protein FliQ [Pseudomonas aeruginosa
C3719]
gi|126193175|gb|EAZ57238.1| flagellar biosynthetic protein FliQ [Pseudomonas aeruginosa 2192]
gi|218772908|emb|CAW28720.1| flagellar biosynthetic protein FliQ [Pseudomonas aeruginosa
LESB58]
gi|310879179|gb|EFQ37773.1| flagellar biosynthetic protein FliQ [Pseudomonas aeruginosa
39016]
Length = 89
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 48/84 (57%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M L++ R A+W ++ ++ +G+++A QA TQI E TL+F+P+++ + +
Sbjct: 1 MTPEVALDLFREALWLTAMIVGVLVVPSLLVGLVVAMFQAATQINEQTLSFLPRLMVILL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
TLI+ P++ Q+ + ++ I
Sbjct: 61 TLIVLGPWLLRQLMEYTQTLIGNI 84
>gi|74317114|ref|YP_314854.1| flagellar biosynthetic protein FliQ [Thiobacillus denitrificans
ATCC 25259]
gi|74056609|gb|AAZ97049.1| flagellar biosynthetic protein FliQ [Thiobacillus denitrificans
ATCC 25259]
Length = 84
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%)
Query: 8 EIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAP 67
++AR A+W ++ + P+L + + + ++ QA TQI E TL FVPK++ V + L
Sbjct: 3 DLARDALWLTVTIAGPLLVAGLLVAFAVSLFQAATQILEPTLAFVPKLLIVVLVLAALGG 62
Query: 68 FIGGQISSFVTLVLSRIQSSL 88
++ Q+ F VL+ S L
Sbjct: 63 WMSDQLVEFARGVLTDFPSLL 83
>gi|114320139|ref|YP_741822.1| flagellar biosynthetic protein FliQ [Alkalilimnicola ehrlichii
MLHE-1]
gi|114226533|gb|ABI56332.1| flagellar biosynthetic protein FliQ [Alkalilimnicola ehrlichii
MLHE-1]
Length = 89
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +E+ + A+ + + P+L SA+ G+LI QA TQI E TL+FVPK+ + +
Sbjct: 1 MTPELAIELGKQALTVAVLLAGPILLSALITGLLIGLFQAATQINEQTLSFVPKLGVMAL 60
Query: 61 TLIISAPFIGGQISSF 76
L I P++ ++ F
Sbjct: 61 VLFIMTPWMHTILTDF 76
>gi|170737011|ref|YP_001778271.1| flagellar biosynthetic protein FliQ [Burkholderia cenocepacia
MC0-3]
gi|169819199|gb|ACA93781.1| flagellar biosynthetic protein FliQ [Burkholderia cenocepacia
MC0-3]
Length = 90
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 34/52 (65%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSR 83
G+L+A QA TQI E T++F+P++I + L ++ P++ G++ + + SR
Sbjct: 33 GVLVAIFQAATQINEQTMSFLPRLITTLVALALAGPWMTGRVMHYTVEIFSR 84
>gi|138894756|ref|YP_001125209.1| flagellar biosynthesis protein FliQ [Geobacillus
thermodenitrificans NG80-2]
gi|196247622|ref|ZP_03146324.1| flagellar biosynthetic protein FliQ [Geobacillus sp. G11MC16]
gi|134266269|gb|ABO66464.1| Flagellar protein required for Flagellar formation [Geobacillus
thermodenitrificans NG80-2]
gi|196212406|gb|EDY07163.1| flagellar biosynthetic protein FliQ [Geobacillus sp. G11MC16]
Length = 89
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 52/81 (64%)
Query: 6 VLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIIS 65
++ +A ++ +L P+L ++ +G++++ QA TQIQE TLTFVPKIIAV + L++
Sbjct: 6 IIRLAEQGVYIVLIVCGPLLLLSLIVGLVVSIFQAATQIQEQTLTFVPKIIAVLLGLVLF 65
Query: 66 APFIGGQISSFVTLVLSRIQS 86
P++ ++ S+ + + + S
Sbjct: 66 GPWMLSKMVSYAHDIFNNLAS 86
>gi|213025315|ref|ZP_03339762.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Typhi str. 404ty]
Length = 57
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 40/53 (75%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSRI 84
G++++ +QALTQIQ+ TL F+ K++A+ ITL++S P++ G + ++ ++ RI
Sbjct: 1 GVIVSLVQALTQIQDQTLQFMIKLLAIAITLMVSYPWLSGILLNYTRQIMLRI 53
>gi|260775666|ref|ZP_05884562.1| type III secretion protein HrpO [Vibrio coralliilyticus ATCC
BAA-450]
gi|260608082|gb|EEX34251.1| type III secretion protein HrpO [Vibrio coralliilyticus ATCC
BAA-450]
Length = 85
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 44/65 (67%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
D+L + ++W ++ S P L A +G+L++ +QAL Q+Q+ TL FV K+I+V +TL++
Sbjct: 2 DILTVFAQSLWLVVVLSLPCLIVASGVGVLVSLIQALMQLQDQTLPFVIKLISVGLTLVM 61
Query: 65 SAPFI 69
+ ++
Sbjct: 62 TGRWM 66
>gi|224826621|ref|ZP_03699722.1| flagellar biosynthetic protein FliQ [Lutiella nitroferrum 2002]
gi|224601222|gb|EEG07404.1| flagellar biosynthetic protein FliQ [Lutiella nitroferrum 2002]
Length = 89
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 58/81 (71%), Gaps = 3/81 (3%)
Query: 6 VLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIIS 65
V+ + + A++ ++ +APVL ++ +G+L++ LQA TQI E+TLTF+PK++A+F+TL+++
Sbjct: 6 VINLVQNALYVLIIVAAPVLLVSLLVGLLVSVLQAATQINEMTLTFIPKLLALFVTLVLA 65
Query: 66 APFIGGQISSFVTLVLSRIQS 86
P++ I++ V + QS
Sbjct: 66 GPWM---INTLVDYTVRLFQS 83
>gi|197286516|ref|YP_002152388.1| type III secretion system protein [Proteus mirabilis HI4320]
gi|227357590|ref|ZP_03841943.1| flagellar biosynthesis protein FliQ [Proteus mirabilis ATCC
29906]
gi|194684003|emb|CAR45293.1| putative type III secretion system protein [Proteus mirabilis
HI4320]
gi|227162300|gb|EEI47304.1| flagellar biosynthesis protein FliQ [Proteus mirabilis ATCC
29906]
Length = 84
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 46/70 (65%), Gaps = 2/70 (2%)
Query: 5 DVLEIARAAMW-TILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLI 63
D++ A A++ IL S+AP+ A F+G+LI LQ +TQIQE TL F K++ VF+ L+
Sbjct: 2 DMVYAANKAIYLIILLSAAPIAI-ATFIGLLIGLLQTITQIQEQTLPFGVKLVGVFVCLL 60
Query: 64 ISAPFIGGQI 73
+ ++G ++
Sbjct: 61 MMMGWMGDKL 70
>gi|50121006|ref|YP_050173.1| type III secretion system protein [Pectobacterium atrosepticum
SCRI1043]
gi|42560425|gb|AAS20385.1| HrcS [Pectobacterium atrosepticum]
gi|49611532|emb|CAG74980.1| type III secretion protein [Pectobacterium atrosepticum SCRI1043]
gi|167030915|gb|ABZ05783.1| HrcS [Pectobacterium carotovorum subsp. carotovorum]
Length = 86
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 44/66 (66%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
+++ + R AM ++ SAP L A+ +G+LI+ LQA+ Q+Q+ TL F K+I+V +TL +
Sbjct: 2 EIITLFRQAMVMVVLLSAPPLLVAVIVGVLISLLQAVMQLQDQTLPFAVKLISVGLTLAL 61
Query: 65 SAPFIG 70
+IG
Sbjct: 62 CGRWIG 67
>gi|238785154|ref|ZP_04629148.1| Secretion system apparatus protein ssaS [Yersinia bercovieri ATCC
43970]
gi|238713969|gb|EEQ05987.1| Secretion system apparatus protein ssaS [Yersinia bercovieri ATCC
43970]
Length = 89
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 51/76 (67%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ A V+ +A +W +L S PV+ A +G++++ LQALTQIQ+ TL F+ K++AV
Sbjct: 1 MSNAIVIHLATQLLWIVLLLSMPVVVVASVVGLVVSLLQALTQIQDQTLQFLIKLLAVSA 60
Query: 61 TLIISAPFIGGQISSF 76
TL+I+ ++G + ++
Sbjct: 61 TLLITYHWMGSTLLNY 76
>gi|134294020|ref|YP_001117756.1| HrpO family type III secretion protein [Burkholderia
vietnamiensis G4]
gi|134137177|gb|ABO58291.1| type III secretion protein, HrpO family [Burkholderia
vietnamiensis G4]
Length = 92
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 51/84 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + +L++ R A+ +L S P++ A G+++A LQA+TQ+Q+ + V ++IAV +
Sbjct: 1 MTSSTILDLTRQALMLVLLLSLPIVAIATVTGLVVAILQAVTQVQDANIGIVVRLIAVMV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
L++ + ++G ++ F L R+
Sbjct: 61 ALVLLSGWLGSEVLRFAQQALERM 84
>gi|157371198|ref|YP_001479187.1| flagellar biosynthesis protein FliQ [Serratia proteamaculans 568]
gi|157322962|gb|ABV42059.1| flagellar biosynthetic protein FliQ [Serratia proteamaculans 568]
Length = 89
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 32/38 (84%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
G++++ LQA TQI E+TL+F+PKI+AV T++I+ P++
Sbjct: 32 GLVVSLLQAATQINEMTLSFIPKILAVVATIVIAGPWM 69
>gi|226225723|ref|YP_002759829.1| flagellar biosynthetic protein FliQ [Gemmatimonas aurantiaca
T-27]
gi|226088914|dbj|BAH37359.1| flagellar biosynthetic protein FliQ [Gemmatimonas aurantiaca
T-27]
Length = 89
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 53/84 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ V+++ R A+ T L SAP+L A+ +G++IA +Q++TQIQE TL FVPK+I V
Sbjct: 1 MSHQIVIDLTRDAIMTALMVSAPLLLLALGVGLIIAIIQSVTQIQEQTLVFVPKLILVGG 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
I+ P++ + F T ++ I
Sbjct: 61 AFIVGLPWLMQIMIKFTTQIIRGI 84
>gi|239817148|ref|YP_002946058.1| flagellar biosynthetic protein FliQ [Variovorax paradoxus S110]
gi|239803725|gb|ACS20792.1| flagellar biosynthetic protein FliQ [Variovorax paradoxus S110]
Length = 89
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 51/84 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + A+ L AP+L A+ +G++I+ QA TQI E TL+F+PK++AVF
Sbjct: 1 MTPESVMSLGSQAIHVSLLLGAPMLLVALVVGLVISIFQAATQINEATLSFIPKLLAVFA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
L+++ P++ Q+ ++ + S I
Sbjct: 61 VLVLAGPWMLAQMLDYIRTLFSSI 84
>gi|51587275|emb|CAE53661.1| putative HrcS [Pseudomonas fluorescens bv. V]
gi|51587287|emb|CAE53670.1| putative HrcS [Pseudomonas fluorescens bv. V]
gi|226446412|gb|ACO58571.1| HrcS [Pseudomonas fluorescens]
Length = 87
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 11 RAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIG 70
+ M ++ +AP L A+ +G+L + +QAL QIQ+ TL F K++AV +TLI++ +IG
Sbjct: 8 KQGMLLVVVLTAPPLMVAVVVGVLTSLVQALMQIQDQTLPFGIKLVAVGVTLIMTGRWIG 67
Query: 71 GQISSFVTLVLSRIQSS 87
++ + L I S
Sbjct: 68 VELIQLINLTFEMIGRS 84
>gi|167841180|ref|ZP_02467864.1| type III secretion apparatus protein EscS [Burkholderia
thailandensis MSMB43]
Length = 89
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 55/84 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+EA + ++A MW +L S PV+ A +GIL++ +QALTQ+Q+ T+ F+ K++AV +
Sbjct: 1 MSEAVITQLAAQMMWLVLLLSLPVVVVASVVGILVSLVQALTQVQDQTIQFLIKLLAVAV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
TL + ++G + ++ T ++I
Sbjct: 61 TLAATYHWMGDVLINYATQSFNQI 84
>gi|104782807|ref|YP_609305.1| flagellar biosynthesis protein FliQ [Pseudomonas entomophila L48]
gi|95111794|emb|CAK16518.1| flagellar biosynthetic protein FliQ [Pseudomonas entomophila L48]
Length = 89
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 42/62 (67%)
Query: 8 EIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAP 67
++ R A+W A ++ ++ +G+++A QA TQI E TL+F+P+++ + ITLI++ P
Sbjct: 8 DLFRNALWLTTLMVAVLVVPSLLVGLVVAMFQAATQINEQTLSFLPRLLVMLITLIVAGP 67
Query: 68 FI 69
++
Sbjct: 68 WL 69
>gi|149182520|ref|ZP_01860993.1| flagellar biosynthesis protein Q [Bacillus sp. SG-1]
gi|148849780|gb|EDL63957.1| flagellar biosynthesis protein Q [Bacillus sp. SG-1]
Length = 89
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 51/85 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN V+ +A ++T L P+L A+ +G+ ++ QA TQIQE TL F+PKI+AV +
Sbjct: 1 MNAESVIALAERGVYTTLVICGPLLLLALVVGLAVSIFQATTQIQEQTLAFIPKIVAVLV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
++ P++ ++ ++ + + S +
Sbjct: 61 GVVFFGPWMLTKLVTYASDIFSNLN 85
>gi|300717242|ref|YP_003742045.1| flagellar biosynthesis protein [Erwinia billingiae Eb661]
gi|299063078|emb|CAX60198.1| Flagellar biosynthesis protein [Erwinia billingiae Eb661]
Length = 89
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 31/38 (81%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
G++I+ LQA TQI E TL+F+PKI+AV T++I+ P++
Sbjct: 32 GLIISLLQAATQINEQTLSFIPKILAVVATMVIAGPWM 69
>gi|32490798|ref|NP_871052.1| hypothetical protein WGLp049 [Wigglesworthia glossinidia
endosymbiont of Glossina brevipalpis]
gi|25166004|dbj|BAC24195.1| fliQ [Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis]
Length = 90
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 35/44 (79%)
Query: 21 SAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
SA L +AM G++I+ LQA TQI E+TL+F+PKI++V IT++I
Sbjct: 21 SAIPLLAAMITGLIISILQASTQINEMTLSFIPKILSVIITILI 64
>gi|126665004|ref|ZP_01735987.1| flagellar biosynthesis protein Q [Marinobacter sp. ELB17]
gi|126630374|gb|EBA00989.1| flagellar biosynthesis protein Q [Marinobacter sp. ELB17]
Length = 89
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 44/69 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V++I R A+W I+ ++ ++ + +G++++ QA TQI E TL+F+P+++ I
Sbjct: 1 MTPETVIDILREALWMIVLLASVIITPGLIIGLVVSTFQAATQINEQTLSFLPRLLITLI 60
Query: 61 TLIISAPFI 69
+I+ P++
Sbjct: 61 VIIVWGPWM 69
>gi|253990105|ref|YP_003041461.1| flagellar biosynthesis protein FliQ [Photorhabdus asymbiotica
subsp. asymbiotica ATCC 43949]
gi|253781555|emb|CAQ84718.1| flagellar biosynthetic protein fliq [Photorhabdus asymbiotica]
Length = 89
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 31/36 (86%)
Query: 34 LIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
+++ LQA TQ+ E+TL+F+PKI+AVF+T +I+ P++
Sbjct: 34 IVSLLQAATQVNEMTLSFIPKILAVFVTTVIAGPWM 69
>gi|237755396|ref|ZP_04584023.1| flagellar biosynthetic protein FliQ [Sulfurihydrogenibium
yellowstonense SS-5]
gi|237692437|gb|EEP61418.1| flagellar biosynthetic protein FliQ [Sulfurihydrogenibium
yellowstonense SS-5]
Length = 89
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%)
Query: 21 SAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLV 80
PV+ +G+LI+ QA TQI E+T+TFVPKIIA I LII ++ ++ + V
Sbjct: 21 GGPVILITFIVGLLISIFQAATQINEMTITFVPKIIAAVIGLIIFGSWMTTKLVDYTKEV 80
Query: 81 LSRI 84
L I
Sbjct: 81 LMMI 84
>gi|85060035|ref|YP_455737.1| flagellar biosynthesis protein FliQ [Sodalis glossinidius str.
'morsitans']
gi|84780555|dbj|BAE75332.1| flagellar biosynthetic protein FliQ [Sodalis glossinidius str.
'morsitans']
Length = 89
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 39/55 (70%)
Query: 30 FLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSRI 84
F G++I+ LQA TQ+ E+TL+F+PKI+AV T+ ++ P++ I ++ +L+ +
Sbjct: 30 FSGLIISLLQAATQVNEMTLSFIPKILAVVATITLAGPWMLNLILDYMRTLLTNL 84
>gi|238918895|ref|YP_002932409.1| EsaS [Edwardsiella ictaluri 93-146]
gi|48256989|gb|AAT41684.1| type three secretion apparatus protein S [Edwardsiella ictaluri]
gi|84663103|gb|ABC60085.1| EsaS [Edwardsiella ictaluri 93-146]
gi|238868463|gb|ACR68174.1| EsaS [Edwardsiella ictaluri 93-146]
Length = 89
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 49/76 (64%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M A ++++A +W +L S PV+ A +G+L+ +QALTQIQ+ T++F K++A +
Sbjct: 1 MGTAQLVQLASELLWLVLILSLPVVLVASLVGVLVGLVQALTQIQDQTVSFAIKLVAACV 60
Query: 61 TLIISAPFIGGQISSF 76
TL ++ ++G + S+
Sbjct: 61 TLALTYHWMGSALFSY 76
>gi|270262392|ref|ZP_06190663.1| flagellar biosynthesis protein FliQ [Serratia odorifera 4Rx13]
gi|270043076|gb|EFA16169.1| flagellar biosynthesis protein FliQ [Serratia odorifera 4Rx13]
Length = 89
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 32/38 (84%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
G++++ LQA TQI E+TL+F+PKI+AV T++++ P++
Sbjct: 32 GLVVSLLQAATQINEMTLSFIPKILAVVATIVVAGPWM 69
>gi|225552410|ref|ZP_03773350.1| flagellar biosynthetic protein FliQ [Borrelia sp. SV1]
gi|225371408|gb|EEH00838.1| flagellar biosynthetic protein FliQ [Borrelia sp. SV1]
Length = 87
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 48/66 (72%)
Query: 21 SAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLV 80
SAP+L A+ +G+LI+ QA+T IQ+ TL+F+PKII + +T++I P+I ++ F ++
Sbjct: 21 SAPMLIIALIVGLLISIFQAITSIQDQTLSFIPKIIVILLTIVIFGPWILNKLMRFTYII 80
Query: 81 LSRIQS 86
S++Q+
Sbjct: 81 FSQLQN 86
>gi|156933431|ref|YP_001437347.1| flagellar biosynthesis protein FliQ [Cronobacter sakazakii ATCC
BAA-894]
gi|156531685|gb|ABU76511.1| hypothetical protein ESA_01249 [Cronobacter sakazakii ATCC
BAA-894]
Length = 90
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 31/38 (81%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
G+ I+ LQA TQI E+TL+F+PKI+AVF+ ++ + P++
Sbjct: 33 GLFISILQAATQINEMTLSFIPKILAVFVVIVAAGPWM 70
>gi|332159963|ref|YP_004296540.1| type III secretion system protein [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|318607486|emb|CBY28984.1| type III secretion inner membrane protein (YscS,homologous to
flagellar export components) [Yersinia enterocolitica
subsp. palearctica Y11]
gi|325664193|gb|ADZ40837.1| type III secretion system protein [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330862412|emb|CBX72571.1| secretion system apparatus protein ssaS [Yersinia enterocolitica
W22703]
Length = 89
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 51/76 (67%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ A V+ +A +W +L S PV+ A +GI+++ LQALTQIQ+ TL F+ K++AV
Sbjct: 1 MSNAIVVHLATQLLWIVLLLSMPVVVVASVVGIVVSLLQALTQIQDQTLQFLIKLLAVSA 60
Query: 61 TLIISAPFIGGQISSF 76
TL+I+ ++G + ++
Sbjct: 61 TLLITYHWMGSTLLNY 76
>gi|34498580|ref|NP_902795.1| flagellar biosynthetic protein FliQ [Chromobacterium violaceum
ATCC 12472]
gi|34104434|gb|AAQ60792.1| flagellar biosynthetic protein FliQ [Chromobacterium violaceum
ATCC 12472]
Length = 89
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 59/86 (68%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ V+ I + A++ ++ SAPVL +++ +G+L++ LQA TQI E+TLTF+PK++A+F+
Sbjct: 1 MSPELVISIVQNALYILIIVSAPVLLTSLLVGLLVSVLQAATQINEMTLTFIPKLLAMFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
L+++ P++ + + T + I +
Sbjct: 61 VLVLAGPWMLNTLIEYTTRLFQSIPN 86
>gi|157363489|ref|YP_001470256.1| flagellar biosynthetic protein FliQ [Thermotoga lettingae TMO]
gi|157314093|gb|ABV33192.1| flagellar biosynthetic protein FliQ [Thermotoga lettingae TMO]
Length = 88
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 37/56 (66%), Gaps = 4/56 (7%)
Query: 16 TILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGG 71
T+L P L ++ +G++I+ QA+TQI E TLTF PKII V +T++ F+GG
Sbjct: 16 TVLVVVTPALLISLVVGLIISIFQAVTQIHEQTLTFAPKIIVVLLTVM----FLGG 67
>gi|260598458|ref|YP_003211029.1| flagellar biosynthesis protein FliQ [Cronobacter turicensis
z3032]
gi|260217635|emb|CBA31935.1| Flagellar biosynthetic protein fliQ [Cronobacter turicensis
z3032]
Length = 89
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 31/38 (81%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
G+ I+ LQA TQI E+TL+F+PKI+AVF+ ++ + P++
Sbjct: 32 GLFISILQAATQINEMTLSFIPKILAVFVVIVAAGPWM 69
>gi|296103628|ref|YP_003613774.1| Flagellar biosynthetic protein fliQ [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295058087|gb|ADF62825.1| Flagellar biosynthetic protein fliQ [Enterobacter cloacae subsp.
cloacae ATCC 13047]
Length = 89
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 38/58 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAV 58
M V+ I A+ L SAP+L +A+ G++I+ LQA TQ+ E+T+TF+PKI+ +
Sbjct: 1 MTPESVMVIGMQAIKVGLMVSAPLLVAALVTGLIISILQAATQVNEMTMTFIPKILMI 58
>gi|254519407|ref|ZP_05131463.1| flagellar biosynthetic protein FliQ [Clostridium sp. 7_2_43FAA]
gi|226913156|gb|EEH98357.1| flagellar biosynthetic protein FliQ [Clostridium sp. 7_2_43FAA]
Length = 89
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 41/58 (70%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAV 58
M+E ++ I R A++T L + P+L ++ +G++I+ QA TQIQE TLTFVPK+I +
Sbjct: 1 MSENLIIGIVRDALYTSLKVAGPILIVSILIGLIISIFQATTQIQEQTLTFVPKLIGI 58
>gi|157164876|ref|YP_001467585.1| flagellar biosynthesis protein FliQ [Campylobacter concisus
13826]
gi|112801104|gb|EAT98448.1| flagellar biosynthetic protein FliQ [Campylobacter concisus
13826]
Length = 88
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%)
Query: 21 SAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLV 80
S P+L S + G++I+ QA TQI E TL+FVPKI+ V + +I P++ + F T +
Sbjct: 20 SLPMLLSGLIAGLIISIFQATTQINETTLSFVPKILLVVVVIIFLMPWMISMMVEFTTRM 79
Query: 81 LSRI 84
L I
Sbjct: 80 LDFI 83
>gi|330809225|ref|YP_004353687.1| flagellar biosynthetic protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327377333|gb|AEA68683.1| Flagellar biosynthetic protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 87
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 42/64 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + +L + A+ T +AP+L + + +G+L++ LQ TQIQE+TLTF+PK+I +
Sbjct: 1 MTQDFMLYALKEALLTSAMVAAPLLLAILIVGLLVSILQVATQIQEMTLTFIPKLIVTVV 60
Query: 61 TLII 64
L++
Sbjct: 61 MLLV 64
>gi|218887306|ref|YP_002436627.1| flagellar biosynthetic protein FliQ [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218758260|gb|ACL09159.1| flagellar biosynthetic protein FliQ [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 89
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 52/76 (68%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ AR ++ L S P+L + +G++++ +QA TQIQE+TL+F+PKI+++F+
Sbjct: 1 MTPEMVIAFARQSIEIALLISLPMLGVGLVVGVVVSIIQAATQIQEMTLSFIPKIVSIFL 60
Query: 61 TLIISAPFIGGQISSF 76
L+IS P+I ++ ++
Sbjct: 61 ALLISFPWIMDKMITY 76
>gi|332187880|ref|ZP_08389613.1| flagellar biosynthetic protein FliQ [Sphingomonas sp. S17]
gi|332012041|gb|EGI54113.1| flagellar biosynthetic protein FliQ [Sphingomonas sp. S17]
Length = 89
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 48/84 (57%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ L +A MW + ++AP+L + G++I +QA T I E TL+FVPK+I V I
Sbjct: 1 MDAQYFLTLANQTMWVLALAAAPILLPVLVSGLVIGMIQAATSINEQTLSFVPKLIVVAI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
+++I I G +S F + RI
Sbjct: 61 SILIFGSMIMGLLSDFTVSMFERI 84
>gi|302338094|ref|YP_003803300.1| flagellar biosynthetic protein FliQ [Spirochaeta smaragdinae DSM
11293]
gi|301635279|gb|ADK80706.1| flagellar biosynthetic protein FliQ [Spirochaeta smaragdinae DSM
11293]
Length = 89
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 35/54 (64%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPK 54
M +E+ R+A++ IL S PVL + +G++I+ QA T IQE TLTFVPK
Sbjct: 1 MTLGFAIELIRSAVFQILVLSGPVLLIGVGVGLIISIFQATTSIQEQTLTFVPK 54
>gi|296157443|ref|ZP_06840278.1| flagellar biosynthetic protein FliQ [Burkholderia sp. Ch1-1]
gi|295892215|gb|EFG71998.1| flagellar biosynthetic protein FliQ [Burkholderia sp. Ch1-1]
Length = 89
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 56/84 (66%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN+ V+ +A AM+ L +AP+L A+ +G++++ QA TQI E TL+F+PK++A+ +
Sbjct: 1 MNQESVMTLAHQAMYVGLLLAAPLLLVALVVGLVVSLFQAATQINESTLSFIPKLLAIAV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
T++I+ P++ I ++ L+ I
Sbjct: 61 TMVIAGPWMLTTILDYLRQTLTNI 84
>gi|171915733|ref|ZP_02931203.1| putative type III secretion protein [Verrucomicrobium spinosum
DSM 4136]
Length = 89
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 51/82 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN+A +++I A+ +L S P + A +G++++ QALTQ+QE TL+F K+I V +
Sbjct: 1 MNQAYIIDITNKALILVLILSLPPIVVATVVGVVVSLFQALTQVQEQTLSFAVKLIVVTV 60
Query: 61 TLIISAPFIGGQISSFVTLVLS 82
+I +A + G ++ +F T +
Sbjct: 61 VIIATASWTGAEVINFTTHIFD 82
>gi|115358978|ref|YP_776116.1| HrpO family type III secretion protein [Burkholderia ambifaria
AMMD]
gi|115284266|gb|ABI89782.1| type III secretion protein, HrpO family [Burkholderia ambifaria
AMMD]
Length = 92
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 50/84 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + +L++ R A+ +L S P++ A G+++A LQA+TQ+Q+ + ++IAV +
Sbjct: 1 MTSSTILDLTRQALMLVLLLSLPIVLIATVTGLVVAILQAVTQVQDANIGIAVRLIAVMV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
L++ + ++G ++ F L R+
Sbjct: 61 ALVLLSGWLGSEVLRFAQQALERM 84
>gi|219684704|ref|ZP_03539647.1| flagellar biosynthetic protein FliQ [Borrelia garinii PBr]
gi|219672066|gb|EED29120.1| flagellar biosynthetic protein FliQ [Borrelia garinii PBr]
Length = 87
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 48/66 (72%)
Query: 21 SAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLV 80
SAP+L A+ +G+LI+ QA+T IQ+ TL+F+PKII + +T++I P+I ++ F ++
Sbjct: 21 SAPMLIIALIVGLLISIFQAITSIQDQTLSFIPKIIVILLTIVIFGPWILNKLMQFTYMI 80
Query: 81 LSRIQS 86
+++Q+
Sbjct: 81 FNQLQN 86
>gi|170699431|ref|ZP_02890476.1| type III secretion protein, HrpO family [Burkholderia ambifaria
IOP40-10]
gi|171319945|ref|ZP_02909021.1| type III secretion protein, HrpO family [Burkholderia ambifaria
MEX-5]
gi|172063771|ref|YP_001811422.1| HrpO family type III secretion protein [Burkholderia ambifaria
MC40-6]
gi|170135687|gb|EDT03970.1| type III secretion protein, HrpO family [Burkholderia ambifaria
IOP40-10]
gi|171094801|gb|EDT39839.1| type III secretion protein, HrpO family [Burkholderia ambifaria
MEX-5]
gi|171996288|gb|ACB67206.1| type III secretion protein, HrpO family [Burkholderia ambifaria
MC40-6]
Length = 92
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 50/84 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + +L++ R A+ +L S P++ A G+++A LQA+TQ+Q+ + ++IAV +
Sbjct: 1 MTSSTILDLTRQALMLVLLLSLPIVLIATVTGLVVAILQAVTQVQDANIGIAVRLIAVMV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
L++ + ++G ++ F L R+
Sbjct: 61 ALVLLSGWLGSEVLRFAQQALERM 84
>gi|83716881|ref|YP_438952.1| type III secretion inner membrane protein SctS [Burkholderia
thailandensis E264]
gi|167615482|ref|ZP_02384117.1| type III secretion inner membrane protein SctS [Burkholderia
thailandensis Bt4]
gi|257142056|ref|ZP_05590318.1| type III secretion inner membrane protein SctS [Burkholderia
thailandensis E264]
gi|83650706|gb|ABC34770.1| type III secretion inner membrane protein SctS [Burkholderia
thailandensis E264]
Length = 87
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 47/82 (57%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M D++ + M L S PV+ A G+ I+FLQA+T +QE ++++ K++AV +
Sbjct: 1 METDDLIRLTSQGMMLCLYISLPVVLVAAASGLAISFLQAITSLQEQSISYGVKLVAVTV 60
Query: 61 TLIISAPFIGGQISSFVTLVLS 82
T+ I+ P+ +I F +L+
Sbjct: 61 TVAITGPWAAAEILHFAQQLLT 82
>gi|268680854|ref|YP_003305285.1| flagellar biosynthetic protein FliQ [Sulfurospirillum deleyianum
DSM 6946]
gi|268618885|gb|ACZ13250.1| flagellar biosynthetic protein FliQ [Sulfurospirillum deleyianum
DSM 6946]
Length = 88
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%)
Query: 3 EADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITL 62
EA ++ + L S P+L + M G+ I+ QA+TQI E TL+FVPKI+ +
Sbjct: 2 EAKLIGLGVETFKIALYLSLPMLLAGMIAGLAISIFQAVTQINESTLSFVPKILITIVVA 61
Query: 63 IISAPFIGGQISSFVTLVLSRIQSSL 88
I + P++ + F T + I S L
Sbjct: 62 IFTMPWMMNMMIEFTTRLFDMIPSFL 87
>gi|148976424|ref|ZP_01813130.1| flagellar biosynthesis protein Q [Vibrionales bacterium SWAT-3]
gi|145964247|gb|EDK29503.1| flagellar biosynthesis protein Q [Vibrionales bacterium SWAT-3]
Length = 89
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 49/88 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN +E+ R A+W +L ++ ++ +G+++A QA T I E TL+F+P++I +
Sbjct: 1 MNPEIFVELFRDALWMVLIMVCAIIIPSLLIGLVVAIFQAATSINEQTLSFLPRLIVTLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L++ A ++ + F ++ R+ L
Sbjct: 61 ALMLFAHWMTQMMMEFFFELIERLPQVL 88
>gi|283782108|ref|YP_003372863.1| export protein FliQ family 3 [Pirellula staleyi DSM 6068]
gi|283440561|gb|ADB19003.1| export protein FliQ family 3 [Pirellula staleyi DSM 6068]
Length = 91
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 48/78 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ D + + + AM T L AP+L M +G+LI QALTQ+Q+ T+ FVPK++A+
Sbjct: 1 MDPQDAVTLTQQAMMTALVLCAPLLLVGMLVGLLIGLAQALTQVQDQTVAFVPKLVAMVA 60
Query: 61 TLIISAPFIGGQISSFVT 78
+++ P++ Q+ + T
Sbjct: 61 VMLLCLPWLIEQMMEYST 78
>gi|325295422|ref|YP_004281936.1| flagellar biosynthetic protein FliQ [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065870|gb|ADY73877.1| flagellar biosynthetic protein FliQ [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 89
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 30/42 (71%)
Query: 23 PVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
PVL + +GI+I+ QA TQI E+TLTF+PKI+A + L I
Sbjct: 23 PVLLTTFLVGIIISIFQAATQIHEMTLTFIPKIVAALLALFI 64
>gi|161520289|ref|YP_001583716.1| HrpO family type III secretion protein [Burkholderia multivorans
ATCC 17616]
gi|189353533|ref|YP_001949160.1| hypothetical protein BMULJ_04777 [Burkholderia multivorans ATCC
17616]
gi|221200553|ref|ZP_03573595.1| type III secretion protein, HrpO family [Burkholderia multivorans
CGD2M]
gi|221206233|ref|ZP_03579247.1| type III secretion protein, HrpO family [Burkholderia multivorans
CGD2]
gi|221209589|ref|ZP_03582570.1| type III secretion protein, HrpO family [Burkholderia multivorans
CGD1]
gi|160344339|gb|ABX17424.1| type III secretion protein, HrpO family [Burkholderia multivorans
ATCC 17616]
gi|189337555|dbj|BAG46624.1| conserved hypothetical protein [Burkholderia multivorans ATCC
17616]
gi|221170277|gb|EEE02743.1| type III secretion protein, HrpO family [Burkholderia multivorans
CGD1]
gi|221174245|gb|EEE06678.1| type III secretion protein, HrpO family [Burkholderia multivorans
CGD2]
gi|221179894|gb|EEE12299.1| type III secretion protein, HrpO family [Burkholderia multivorans
CGD2M]
Length = 92
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 50/84 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + +L++ R A+ +L S P++ A G+++A LQA+TQ+Q+ + ++IAV +
Sbjct: 1 MTSSTILDLTRQALMLVLLLSLPIVLIATVTGLVVAILQAVTQVQDANIGIAVRLIAVMV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
L++ + ++G ++ F L R+
Sbjct: 61 ALVLLSGWLGSEVLRFAQQALERM 84
>gi|85710190|ref|ZP_01041255.1| flagellar biosynthetic protein [Erythrobacter sp. NAP1]
gi|85688900|gb|EAQ28904.1| flagellar biosynthetic protein [Erythrobacter sp. NAP1]
Length = 90
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 2 NEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKI 55
++A +L +A +W PVL SA+ +G+++ +QA T + E TLTFVPK+
Sbjct: 3 DDAQLLALADQTLWVTALIVGPVLLSALAVGLIVGIIQAATSVNEQTLTFVPKL 56
>gi|330947077|gb|EGH47859.1| flagellar biosynthesis protein FliQ [Pseudomonas syringae pv.
pisi str. 1704B]
Length = 89
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 42/69 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +++ R A+W A ++ ++ G+L+A QA TQI E TL+F+P+++ + I
Sbjct: 1 MTPEVAVDLFREALWLTTVLVAILVVPSLLCGLLVAMFQAATQINEQTLSFLPRLLVMLI 60
Query: 61 TLIISAPFI 69
TLI+ P++
Sbjct: 61 TLIVIGPWL 69
>gi|94496749|ref|ZP_01303324.1| hypothetical protein SKA58_16458 [Sphingomonas sp. SKA58]
gi|94423762|gb|EAT08788.1| hypothetical protein SKA58_16458 [Sphingomonas sp. SKA58]
Length = 89
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 40/64 (62%)
Query: 13 AMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQ 72
A+W +L SAP + +A +G+L+A +QA TQ+QE TL + K A+ T+ ++A + G
Sbjct: 12 ALWLVLLLSAPPIVAASAVGLLVALVQAATQLQEQTLQYTLKFFAIVATIFLTASLLAGS 71
Query: 73 ISSF 76
+ +
Sbjct: 72 LYQY 75
>gi|89098627|ref|ZP_01171509.1| flagellar biosynthesis protein Q [Bacillus sp. NRRL B-14911]
gi|89086589|gb|EAR65708.1| flagellar biosynthesis protein Q [Bacillus sp. NRRL B-14911]
Length = 89
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 51/84 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ V+ IA + ++L S P+L A+ +G++++ QA TQIQE TL FVPKI+AV +
Sbjct: 1 MSPETVISIAEQGIMSVLYISGPLLVLALVVGLIVSIFQATTQIQEQTLAFVPKIVAVLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
++ P++ + S+ + S +
Sbjct: 61 GVVFFGPWMLSHMLSYTNEIFSNL 84
>gi|330972450|gb|EGH72516.1| flagellar biosynthesis protein FliQ [Pseudomonas syringae pv.
aceris str. M302273PT]
Length = 89
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 42/69 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +++ R A+W A ++ ++ G+L+A QA TQI E TL+F+P+++ + I
Sbjct: 1 MTPEVAVDLFREALWLTTVLVAILVVPSLLCGLLVAMFQAATQINEQTLSFLPRLLVMLI 60
Query: 61 TLIISAPFI 69
TLI+ P++
Sbjct: 61 TLIVIGPWL 69
>gi|51587323|emb|CAE53697.1| putative HrcS [Pseudomonas sp. CFBP 11402]
Length = 87
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 45/77 (58%)
Query: 11 RAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIG 70
+ M ++ SAP L A+ +G+L + +QAL QIQ TL F K++AV +TLI++ +IG
Sbjct: 8 KQGMLLVVVLSAPPLIVAVVVGVLTSLVQALMQIQGQTLPFGIKLVAVGVTLILTGRWIG 67
Query: 71 GQISSFVTLVLSRIQSS 87
++ + L I S
Sbjct: 68 VELIQLINLTFEMIGRS 84
>gi|238764053|ref|ZP_04625008.1| Secretion system apparatus protein ssaS [Yersinia kristensenii
ATCC 33638]
gi|238697724|gb|EEP90486.1| Secretion system apparatus protein ssaS [Yersinia kristensenii
ATCC 33638]
Length = 89
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 51/76 (67%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ A V+ +A +W +L S PV+ A +G++++ LQALTQIQ+ TL F+ K++AV
Sbjct: 1 MSTAIVVHLATQLLWIVLLLSMPVVVVASVVGLVVSLLQALTQIQDQTLQFLIKLLAVSA 60
Query: 61 TLIISAPFIGGQISSF 76
TL+I+ ++G + ++
Sbjct: 61 TLLITYHWMGSTLLNY 76
>gi|259417808|ref|ZP_05741727.1| flagellar biosynthetic protein FliQ [Silicibacter sp. TrichCH4B]
gi|259346714|gb|EEW58528.1| flagellar biosynthetic protein FliQ [Silicibacter sp. TrichCH4B]
Length = 92
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 36/60 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
+ E + R + ++ S P+L +A+ +G+ + QALT IQE++LTFVPK+ + +
Sbjct: 2 LTEGIFYDTLRQGILAAITMSLPILITALVIGLTVGLFQALTSIQEMSLTFVPKLTGILV 61
>gi|167568049|ref|ZP_02360965.1| type III secretion apparatus protein EscS [Burkholderia
oklahomensis EO147]
gi|167572948|ref|ZP_02365822.1| type III secretion apparatus protein EscS [Burkholderia
oklahomensis C6786]
Length = 89
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 51/76 (67%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+EA + ++A MW +L S PV+ A +GIL++ +QALTQ+Q+ T+ F+ K++AV +
Sbjct: 1 MSEAVITQLAAQMMWLVLLLSLPVVVVASVVGILVSLVQALTQVQDQTIQFLIKLLAVAV 60
Query: 61 TLIISAPFIGGQISSF 76
TL + ++G + ++
Sbjct: 61 TLAATYHWMGDVLVNY 76
>gi|224531611|ref|ZP_03672243.1| flagellar biosynthetic protein FliQ [Borrelia valaisiana VS116]
gi|224511076|gb|EEF81482.1| flagellar biosynthetic protein FliQ [Borrelia valaisiana VS116]
Length = 87
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 48/66 (72%)
Query: 21 SAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLV 80
SAP+L A+ +G+LI+ QA+T IQ+ TL+F+PKII + +T++I P+I ++ F ++
Sbjct: 21 SAPMLIIALIVGLLISIFQAITSIQDQTLSFIPKIIVILLTIVIFGPWILNKLIQFTYMI 80
Query: 81 LSRIQS 86
+++Q+
Sbjct: 81 FNQLQN 86
>gi|154249382|ref|YP_001410207.1| flagellar biosynthetic protein FliQ [Fervidobacterium nodosum
Rt17-B1]
gi|154153318|gb|ABS60550.1| flagellar biosynthetic protein FliQ [Fervidobacterium nodosum
Rt17-B1]
Length = 88
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 7 LEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISA 66
L+IA+ A+ +L+ P L ++ +GILI+ QA TQI E TLTF P+II VF+TL++
Sbjct: 7 LDIAKHAIQLLLTLITPPLLVSLVVGILISIFQAATQIHEQTLTFAPRIIVVFLTLML-- 64
Query: 67 PFIGGQISSFVTLVLSRIQSSL 88
G I S + V I+ +
Sbjct: 65 -LFGWMIESMLEFVKDIIEKYI 85
>gi|84388122|ref|ZP_00991018.1| flagellar biosynthesis protein [Vibrio splendidus 12B01]
gi|84377189|gb|EAP94059.1| flagellar biosynthesis protein [Vibrio splendidus 12B01]
Length = 89
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 49/88 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN +E+ R A+W +L ++ ++ +G+++A QA T I E TL+F+P++I +
Sbjct: 1 MNPEIFVELFRDALWMVLIMVCAIIIPSLLIGLVVAVFQAATSINEQTLSFLPRLIVTLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L++ A ++ + F ++ R+ L
Sbjct: 61 ALMMFAHWMTQMMMEFFFELIERLPQVL 88
>gi|322833207|ref|YP_004213234.1| flagellar biosynthetic protein FliQ [Rahnella sp. Y9602]
gi|321168408|gb|ADW74107.1| flagellar biosynthetic protein FliQ [Rahnella sp. Y9602]
Length = 89
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 31/38 (81%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
G++++ LQA TQI E TL+F+PKI+AV T++I+ P++
Sbjct: 32 GLIVSLLQAATQINEQTLSFIPKILAVVATIVIAGPWM 69
>gi|51587307|emb|CAE53685.1| putative HrcS [Pseudomonas fluorescens bv. II]
Length = 84
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 42/66 (63%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
D L + + M + SAP L A+ +G+L + +QAL QIQ+ TL F K++AV +TL++
Sbjct: 2 DALTLFKEGMLLAVLLSAPPLIVAVIVGVLTSLVQALMQIQDQTLPFGIKLVAVGLTLLV 61
Query: 65 SAPFIG 70
+ +IG
Sbjct: 62 TGRWIG 67
>gi|167566297|ref|ZP_02359213.1| type III secretion protein, HrpO family [Burkholderia
oklahomensis EO147]
gi|167573399|ref|ZP_02366273.1| type III secretion protein, HrpO family [Burkholderia
oklahomensis C6786]
Length = 87
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 47/82 (57%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M D++ + M L S PV+ A G+ I+FLQA+T +QE ++++ K++AV +
Sbjct: 1 MEIDDLIRLTSQGMMLCLYISLPVVLVAAVSGLAISFLQAITSLQEQSISYGVKLVAVTV 60
Query: 61 TLIISAPFIGGQISSFVTLVLS 82
T+ I+ P+ +I F ++S
Sbjct: 61 TVTIAGPWAAAEILHFAQQLIS 82
>gi|51587271|emb|CAE53658.1| putative HrcS [Pseudomonas fluorescens]
Length = 87
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 45/77 (58%)
Query: 11 RAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIG 70
+ M ++ AP L A+ +G+L + +QAL QIQ+ TL F K++AV ITLI++ +IG
Sbjct: 8 KQGMLLVVVLLAPPLIVAVVVGVLTSLVQALMQIQDQTLPFGIKLVAVGITLIMTGRWIG 67
Query: 71 GQISSFVTLVLSRIQSS 87
++ + L I S
Sbjct: 68 VELIQLINLTFEMIGRS 84
>gi|307546959|ref|YP_003899438.1| flagellar biosynthesis protein FliQ [Halomonas elongata DSM 2581]
gi|307218983|emb|CBV44253.1| flagellar biosynthesis protein FliQ [Halomonas elongata DSM 2581]
Length = 89
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 35/52 (67%)
Query: 35 IAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSRIQS 86
++ QA TQI E+TL+F+PKI+AVF L+++ P++ I+ F +L I +
Sbjct: 35 VSLFQAATQINEMTLSFIPKILAVFTVLVLAGPWLLKLITDFTRELLGNIPT 86
>gi|190694823|gb|ACE88958.1| HrcS [Pseudomonas fluorescens]
Length = 87
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 46/77 (59%)
Query: 11 RAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIG 70
+ M ++ +AP L A+ +G++ + +QAL Q+Q+ TL F K++AV ITLI++ +IG
Sbjct: 8 KQGMLLVVMLTAPPLIVAVVVGVMTSLVQALMQVQDQTLPFGIKLVAVGITLIMTGRWIG 67
Query: 71 GQISSFVTLVLSRIQSS 87
++ + L I S
Sbjct: 68 VELIQLMNLTFDMIGRS 84
>gi|56551544|ref|YP_162383.1| export protein FliQ family 3 [Zymomonas mobilis subsp. mobilis
ZM4]
gi|241761181|ref|ZP_04759270.1| export protein FliQ family 3 [Zymomonas mobilis subsp. mobilis
ATCC 10988]
gi|260752857|ref|YP_003225750.1| export protein FliQ family 3 [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
gi|56543118|gb|AAV89272.1| export protein FliQ family 3 [Zymomonas mobilis subsp. mobilis
ZM4]
gi|241374800|gb|EER64261.1| export protein FliQ family 3 [Zymomonas mobilis subsp. mobilis
ATCC 10988]
gi|258552220|gb|ACV75166.1| export protein FliQ family 3 [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
Length = 91
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 9 IARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPF 68
+A+ AMW + AP+L A+ +G+ I +QA T + E L+F+PK++ + + L +
Sbjct: 11 VAQQAMWITALAIAPILIPALLIGLFIGMIQAATSLNEQILSFLPKLVVIALVLALFGGS 70
Query: 69 IGGQISSFVTLVLSRIQS 86
I G I F+ RI
Sbjct: 71 IFGLIVDFMHETYGRIPD 88
>gi|14588841|emb|CAA68099.2| HrcS protein [Pantoea agglomerans]
Length = 83
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 40/60 (66%)
Query: 11 RAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIG 70
+ AM ++ SAP L A+ +G+L++ LQA+ Q+Q+ TL F K++AV I L +S +IG
Sbjct: 5 KQAMLLVVLLSAPPLLVAVIVGVLVSLLQAVMQLQDQTLPFAIKLVAVGIALALSGRWIG 64
>gi|46578460|ref|YP_009268.1| flagellar biosynthetic protein FliQ [Desulfovibrio vulgaris str.
Hildenborough]
gi|120603956|ref|YP_968356.1| flagellar biosynthetic protein FliQ [Desulfovibrio vulgaris DP4]
gi|46447871|gb|AAS94527.1| flagellar biosynthetic protein FliQ [Desulfovibrio vulgaris str.
Hildenborough]
gi|120564185|gb|ABM29929.1| flagellar biosynthetic protein FliQ [Desulfovibrio vulgaris DP4]
gi|311232388|gb|ADP85242.1| flagellar biosynthetic protein FliQ [Desulfovibrio vulgaris RCH1]
Length = 89
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 56/88 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ AR ++ L S P+L + +G++++ +QA TQIQE+TL+F+PK++++FI
Sbjct: 1 MTPEFVIGFARQSIELALLISMPILGVGLAVGVVVSVIQAATQIQEMTLSFIPKVVSIFI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+++S P+I ++ +F V I + +
Sbjct: 61 AVLVSFPWIMDKMVTFTREVFLNIPNYI 88
>gi|71736593|ref|YP_273543.1| type III secretion component protein HrcS [Pseudomonas syringae
pv. phaseolicola 1448A]
gi|257487235|ref|ZP_05641276.1| type III secretion component protein HrcS [Pseudomonas syringae
pv. tabaci ATCC 11528]
gi|289623684|ref|ZP_06456638.1| type III secretion component protein HrcS [Pseudomonas syringae
pv. aesculi str. NCPPB3681]
gi|289647642|ref|ZP_06478985.1| type III secretion component protein HrcS [Pseudomonas syringae
pv. aesculi str. 2250]
gi|298485948|ref|ZP_07004023.1| type III secretion system integral membrane protein [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
gi|3282782|gb|AAC25070.1| HrcS [Pseudomonas syringae pv. phaseolicola]
gi|42562003|gb|AAS20445.1| HrcS [Pseudomonas syringae pv. phaseolicola]
gi|71557146|gb|AAZ36357.1| type III secretion component protein HrcS [Pseudomonas syringae
pv. phaseolicola 1448A]
gi|238577786|gb|ACR46697.1| HrcS [Pseudomonas syringae pv. tabaci]
gi|298159534|gb|EFI00580.1| type III secretion system integral membrane protein [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
gi|320322956|gb|EFW79046.1| type III secretion component protein HrcS [Pseudomonas syringae
pv. glycinea str. B076]
gi|320329921|gb|EFW85909.1| type III secretion component protein HrcS [Pseudomonas syringae
pv. glycinea str. race 4]
gi|330871288|gb|EGH05997.1| type III secretion component protein HrcS [Pseudomonas syringae
pv. aesculi str. 0893_23]
gi|330874621|gb|EGH08770.1| type III secretion component protein HrcS [Pseudomonas syringae
pv. glycinea str. race 4]
gi|330894461|gb|EGH27122.1| type III secretion component protein HrcS [Pseudomonas syringae
pv. mori str. 301020]
gi|330984963|gb|EGH83066.1| type III secretion component protein HrcS [Pseudomonas syringae
pv. lachrymans str. M301315]
gi|331009151|gb|EGH89207.1| type III secretion component protein HrcS [Pseudomonas syringae
pv. tabaci ATCC 11528]
Length = 88
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 49/83 (59%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
+ L + + M+ ++ +AP L A+ +G+L + LQAL QIQ+ TL F K+ AV +TL +
Sbjct: 2 EALALFKQGMFLVVILTAPPLGVAVLVGVLTSLLQALMQIQDQTLPFGIKLGAVGLTLAM 61
Query: 65 SAPFIGGQISSFVTLVLSRIQSS 87
+ +IG ++ F+ + I S
Sbjct: 62 TGRWIGVELIQFINMAFDLIARS 84
>gi|152990382|ref|YP_001356104.1| flagellar biosynthetic protein FliQ [Nitratiruptor sp. SB155-2]
gi|151422243|dbj|BAF69747.1| flagellar biosynthetic protein FliQ [Nitratiruptor sp. SB155-2]
Length = 89
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 39/60 (65%), Gaps = 6/60 (10%)
Query: 21 SAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLV 80
S P L +A +G++I+ QA TQIQE+TLTF+PKIIA LII ++ FVTL+
Sbjct: 21 SLPPLATAFGVGLIISIFQAATQIQEMTLTFIPKIIATVAALIIFGSWM------FVTLI 74
>gi|167577334|ref|ZP_02370208.1| type III secretion inner membrane protein SctS [Burkholderia
thailandensis TXDOH]
Length = 87
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 47/82 (57%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M D++ + M L S PV+ A G+ I+FLQA+T +QE ++++ K++AV +
Sbjct: 1 METDDLIRLTLQGMMLCLYISLPVVLVAAASGLAISFLQAITSLQEQSISYGVKLVAVTV 60
Query: 61 TLIISAPFIGGQISSFVTLVLS 82
T+ I+ P+ +I F +L+
Sbjct: 61 TVAITGPWAAAEILHFAQQLLT 82
>gi|254463558|ref|ZP_05076974.1| flagellar biosynthetic protein FliQ [Rhodobacterales bacterium
HTCC2083]
gi|206680147|gb|EDZ44634.1| flagellar biosynthetic protein FliQ [Rhodobacteraceae bacterium
HTCC2083]
Length = 71
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 36/52 (69%)
Query: 18 LSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
++ S P+L +A+ G+ + LQALT +QE+TLTFVPK+ A+ + ++ F+
Sbjct: 1 MAMSIPILSAALIAGVSVGLLQALTSVQEMTLTFVPKLCAIVVVFWMTMNFM 52
>gi|121997285|ref|YP_001002072.1| flagellar biosynthetic protein FliQ [Halorhodospira halophila
SL1]
gi|121588690|gb|ABM61270.1| flagellar biosynthetic protein FliQ [Halorhodospira halophila
SL1]
Length = 89
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 37/56 (66%)
Query: 21 SAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSF 76
+ P+L +A+ +G+++ QA TQI E TL+FVPK++ + + L + P++ ++ F
Sbjct: 21 AGPILLAALIIGLIVGMFQAATQINEQTLSFVPKLVGLAVVLFLLTPWMTQVLTDF 76
>gi|28869177|ref|NP_791796.1| flagellar biosynthetic protein FliQ [Pseudomonas syringae pv.
tomato str. DC3000]
gi|66046672|ref|YP_236513.1| flagellar biosynthesis protein FliQ [Pseudomonas syringae pv.
syringae B728a]
gi|71735616|ref|YP_275527.1| flagellar biosynthesis protein FliQ [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|213967546|ref|ZP_03395694.1| flagellar biosynthesis protein FliQ [Pseudomonas syringae pv.
tomato T1]
gi|237799249|ref|ZP_04587710.1| flagellar biosynthesis protein FliQ [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|257484902|ref|ZP_05638943.1| flagellar biosynthesis protein FliQ [Pseudomonas syringae pv.
tabaci ATCC 11528]
gi|289629019|ref|ZP_06461973.1| flagellar biosynthesis protein FliQ [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|289651609|ref|ZP_06482952.1| flagellar biosynthesis protein FliQ [Pseudomonas syringae pv.
aesculi str. 2250]
gi|289678971|ref|ZP_06499861.1| flagellar biosynthesis protein FliQ [Pseudomonas syringae pv.
syringae FF5]
gi|298487820|ref|ZP_07005860.1| Flagellar biosynthesis protein fliQ [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|301382883|ref|ZP_07231301.1| flagellar biosynthesis protein FliQ [Pseudomonas syringae pv.
tomato Max13]
gi|302061093|ref|ZP_07252634.1| flagellar biosynthesis protein FliQ [Pseudomonas syringae pv.
tomato K40]
gi|302131291|ref|ZP_07257281.1| flagellar biosynthesis protein FliQ [Pseudomonas syringae pv.
tomato NCPPB 1108]
gi|28852417|gb|AAO55491.1| flagellar biosynthetic protein FliQ [Pseudomonas syringae pv.
tomato str. DC3000]
gi|63257379|gb|AAY38475.1| Flagellar biosynthesis protein FliQ [Pseudomonas syringae pv.
syringae B728a]
gi|71556169|gb|AAZ35380.1| flagellar biosynthetic protein FliQ [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|213927847|gb|EEB61394.1| flagellar biosynthesis protein FliQ [Pseudomonas syringae pv.
tomato T1]
gi|298157545|gb|EFH98625.1| Flagellar biosynthesis protein fliQ [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|320325128|gb|EFW81197.1| flagellar biosynthesis protein FliQ [Pseudomonas syringae pv.
glycinea str. B076]
gi|320329387|gb|EFW85380.1| flagellar biosynthesis protein FliQ [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330866459|gb|EGH01168.1| flagellar biosynthesis protein FliQ [Pseudomonas syringae pv.
aesculi str. 0893_23]
gi|330876030|gb|EGH10179.1| flagellar biosynthesis protein FliQ [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
gi|330880586|gb|EGH14735.1| flagellar biosynthesis protein FliQ [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330889046|gb|EGH21707.1| flagellar biosynthesis protein FliQ [Pseudomonas syringae pv.
mori str. 301020]
gi|330899442|gb|EGH30861.1| flagellar biosynthesis protein FliQ [Pseudomonas syringae pv.
japonica str. M301072PT]
gi|330953763|gb|EGH54023.1| flagellar biosynthesis protein FliQ [Pseudomonas syringae Cit 7]
gi|330964682|gb|EGH64942.1| flagellar biosynthesis protein FliQ [Pseudomonas syringae pv.
actinidiae str. M302091]
gi|330976009|gb|EGH76075.1| flagellar biosynthesis protein FliQ [Pseudomonas syringae pv.
aptata str. DSM 50252]
gi|330986503|gb|EGH84606.1| flagellar biosynthesis protein FliQ [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|331011078|gb|EGH91134.1| flagellar biosynthesis protein FliQ [Pseudomonas syringae pv.
tabaci ATCC 11528]
gi|331016990|gb|EGH97046.1| flagellar biosynthesis protein FliQ [Pseudomonas syringae pv.
lachrymans str. M302278PT]
gi|331022104|gb|EGI02161.1| flagellar biosynthesis protein FliQ [Pseudomonas syringae pv.
oryzae str. 1_6]
Length = 89
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 42/69 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +++ R A+W A ++ ++ G+L+A QA TQI E TL+F+P+++ + +
Sbjct: 1 MTPEVAVDLFREALWLTTVLVAILVVPSLLCGLLVAMFQAATQINEQTLSFLPRLLVMLV 60
Query: 61 TLIISAPFI 69
TLI+ P++
Sbjct: 61 TLIVIGPWL 69
>gi|51587263|emb|CAE53652.1| putative HrcS [Pseudomonas blatchfordae]
Length = 87
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 46/77 (59%)
Query: 11 RAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIG 70
+ M ++ +AP L A+ +G+L + +QAL Q+Q+ TL F K++AV ITLI++ +IG
Sbjct: 8 KQGMLLVVMLTAPPLIVAVVVGVLTSLVQALMQVQDQTLPFGIKLVAVGITLIMTGRWIG 67
Query: 71 GQISSFVTLVLSRIQSS 87
++ + + I S
Sbjct: 68 VELVQLMNVTFDMIGRS 84
>gi|91785623|ref|YP_560829.1| flagellar biosynthesis protein FliQ [Burkholderia xenovorans
LB400]
gi|187925751|ref|YP_001897393.1| flagellar biosynthesis protein FliQ [Burkholderia phytofirmans
PsJN]
gi|91689577|gb|ABE32777.1| Flagellar biosynthesis protein FliQ [Burkholderia xenovorans
LB400]
gi|187716945|gb|ACD18169.1| flagellar biosynthetic protein FliQ [Burkholderia phytofirmans
PsJN]
Length = 89
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 56/84 (66%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN+ V+ +A AM+ L +AP+L A+ +G++++ QA TQI E TL+F+PK++A+ +
Sbjct: 1 MNQESVMTLAHQAMYVGLLLAAPLLLVALVVGLVVSLFQAATQINESTLSFIPKLLAIAV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
T++I+ P++ + ++ L+ I
Sbjct: 61 TMVIAGPWMLTTMLDYLRQTLTNI 84
>gi|53716434|ref|YP_106202.1| type III secretion inner membrane protein SctS [Burkholderia
mallei ATCC 23344]
gi|53722639|ref|YP_111624.1| type III secretion protein [Burkholderia pseudomallei K96243]
gi|67639122|ref|ZP_00438022.1| type III secretion inner membrane protein SctS [Burkholderia
mallei GB8 horse 4]
gi|76818200|ref|YP_335834.1| type III secretion inner membrane protein SctS [Burkholderia
pseudomallei 1710b]
gi|124381921|ref|YP_001025754.1| type III secretion inner membrane protein SctS [Burkholderia
mallei NCTC 10229]
gi|126444326|ref|YP_001063271.1| HrpO family type III secretion protein [Burkholderia pseudomallei
668]
gi|126446836|ref|YP_001077839.1| type III secretion inner membrane protein SctS [Burkholderia
mallei NCTC 10247]
gi|126456673|ref|YP_001076227.1| HrpO family type III secretion protein [Burkholderia pseudomallei
1106a]
gi|134282171|ref|ZP_01768877.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 305]
gi|167004562|ref|ZP_02270320.1| type III secretion inner membrane protein SctS [Burkholderia
mallei PRL-20]
gi|167724360|ref|ZP_02407596.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei DM98]
gi|167820505|ref|ZP_02452185.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 91]
gi|167828877|ref|ZP_02460348.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 9]
gi|167850340|ref|ZP_02475848.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei B7210]
gi|167898937|ref|ZP_02486338.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 7894]
gi|167907265|ref|ZP_02494470.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei NCTC 13177]
gi|167923470|ref|ZP_02510561.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei BCC215]
gi|226198427|ref|ZP_03793995.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei Pakistan 9]
gi|237509767|ref|ZP_04522482.1| type III secretion inner membrane protein SctS [Burkholderia
pseudomallei MSHR346]
gi|242312858|ref|ZP_04811875.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 1106b]
gi|254176181|ref|ZP_04882839.1| type III secretion inner membrane protein SctS [Burkholderia
mallei ATCC 10399]
gi|254185082|ref|ZP_04891671.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 1655]
gi|254186947|ref|ZP_04893463.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei Pasteur 52237]
gi|254194408|ref|ZP_04900840.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei S13]
gi|254201083|ref|ZP_04907448.1| type III secretion inner membrane protein SctS [Burkholderia
mallei FMH]
gi|254205048|ref|ZP_04911401.1| type III secretion inner membrane protein SctS [Burkholderia
mallei JHU]
gi|254264758|ref|ZP_04955623.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 1710a]
gi|254301372|ref|ZP_04968816.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 406e]
gi|254359169|ref|ZP_04975441.1| type III secretion inner membrane protein SctS [Burkholderia
mallei 2002721280]
gi|52213053|emb|CAH39091.1| putative type III secretion protein [Burkholderia pseudomallei
K96243]
gi|52422404|gb|AAU45974.1| type III secretion inner membrane protein SctS [Burkholderia
mallei ATCC 23344]
gi|76582673|gb|ABA52147.1| type III secretion inner membrane protein SctS [Burkholderia
pseudomallei 1710b]
gi|126223817|gb|ABN87322.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 668]
gi|126230441|gb|ABN93854.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 1106a]
gi|126239690|gb|ABO02802.1| type III secretion inner membrane protein SctS [Burkholderia
mallei NCTC 10247]
gi|134246700|gb|EBA46788.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 305]
gi|147748695|gb|EDK55770.1| type III secretion inner membrane protein SctS [Burkholderia
mallei FMH]
gi|147754634|gb|EDK61698.1| type III secretion inner membrane protein SctS [Burkholderia
mallei JHU]
gi|148028356|gb|EDK86316.1| type III secretion inner membrane protein SctS [Burkholderia
mallei 2002721280]
gi|157811426|gb|EDO88596.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 406e]
gi|157934631|gb|EDO90301.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei Pasteur 52237]
gi|160697223|gb|EDP87193.1| type III secretion inner membrane protein SctS [Burkholderia
mallei ATCC 10399]
gi|169651159|gb|EDS83852.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei S13]
gi|184215674|gb|EDU12655.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 1655]
gi|225929484|gb|EEH25503.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei Pakistan 9]
gi|235001972|gb|EEP51396.1| type III secretion inner membrane protein SctS [Burkholderia
pseudomallei MSHR346]
gi|238519667|gb|EEP83136.1| type III secretion inner membrane protein SctS [Burkholderia
mallei GB8 horse 4]
gi|242136097|gb|EES22500.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 1106b]
gi|243060177|gb|EES42363.1| type III secretion inner membrane protein SctS [Burkholderia
mallei PRL-20]
gi|254215760|gb|EET05145.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 1710a]
gi|261826563|gb|ABM99331.2| type III secretion inner membrane protein SctS [Burkholderia
mallei NCTC 10229]
Length = 87
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 47/82 (57%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M D++ + M L S PV+ A G+ I+FLQA+T +QE ++++ K++AV +
Sbjct: 1 MEIDDLIRLTSQGMMLCLYISLPVVLVAAASGLAISFLQAITSLQEQSISYGVKLVAVTV 60
Query: 61 TLIISAPFIGGQISSFVTLVLS 82
T+ I+ P+ +I F ++S
Sbjct: 61 TVAIAGPWAAAEILHFAQQLMS 82
>gi|149908446|ref|ZP_01897109.1| flagellar biosynthesis protein [Moritella sp. PE36]
gi|149808609|gb|EDM68544.1| flagellar biosynthesis protein [Moritella sp. PE36]
Length = 89
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 44/72 (61%)
Query: 7 LEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISA 66
++I R A+WT+L V+ + +G++++ QA T I E TL+F+P++IA + LI A
Sbjct: 7 VDIFRQALWTVLLLVCAVVVPGLIVGLVVSVFQAATSINEQTLSFLPRLIATLLALIYGA 66
Query: 67 PFIGGQISSFVT 78
+ G++ F T
Sbjct: 67 HWGFGRLMEFFT 78
>gi|303326582|ref|ZP_07357025.1| flagellar biosynthetic protein FliQ [Desulfovibrio sp. 3_1_syn3]
gi|302864498|gb|EFL87429.1| flagellar biosynthetic protein FliQ [Desulfovibrio sp. 3_1_syn3]
Length = 89
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 51/76 (67%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ V+ R A+ L + P+L + +G++++ +QA TQIQE+TLTF+PKI+ +FI
Sbjct: 1 MSPDFVIGFGRQAIELCLMMALPMLGVGLGVGVVVSVIQAATQIQEMTLTFIPKIVCMFI 60
Query: 61 TLIISAPFIGGQISSF 76
L+++ P++ ++ +F
Sbjct: 61 ALLLALPWLMERMITF 76
>gi|197120184|ref|YP_002140611.1| flagellar biogenesis protein FliQ [Geobacter bemidjiensis Bem]
gi|253702493|ref|YP_003023682.1| flagellar biosynthetic protein FliQ [Geobacter sp. M21]
gi|197089544|gb|ACH40815.1| flagellar biogenesis protein FliQ [Geobacter bemidjiensis Bem]
gi|251777343|gb|ACT19924.1| flagellar biosynthetic protein FliQ [Geobacter sp. M21]
Length = 89
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 46/71 (64%)
Query: 6 VLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIIS 65
V+++ R + ++ SAP+L A+ +G+LI+ QA+T I E TL F PKI+AV + +++
Sbjct: 6 VVQLGRRSFEAVILLSAPLLICALVVGLLISIFQAVTSINEATLAFAPKIVAVMVAMVVF 65
Query: 66 APFIGGQISSF 76
P++ +S F
Sbjct: 66 FPWMMMYMSDF 76
>gi|167840283|ref|ZP_02466967.1| type III secretion inner membrane protein SctS [Burkholderia
thailandensis MSMB43]
Length = 87
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 47/83 (56%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M D++ + M L S P++ A G+ I+FLQA+T +QE ++++ K+IAV +
Sbjct: 1 MEIDDLIRLTSQGMMLCLYISLPIVLVAAASGLAISFLQAITSLQEQSISYGVKLIAVTV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSR 83
T+ I+ P+ +I F +L+
Sbjct: 61 TVAIAGPWAAAEILHFAQQLLTE 83
>gi|266621914|ref|ZP_06114849.1| flagellar biosynthetic protein FliQ [Clostridium hathewayi DSM
13479]
gi|288866387|gb|EFC98685.1| flagellar biosynthetic protein FliQ [Clostridium hathewayi DSM
13479]
Length = 87
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPK 54
M V+E+ + AM + P+L ++ +G+++A QA TQI E TLTFVPK
Sbjct: 1 MTADQVMEVMKEAMMVAFEIAGPLLIISIVVGLIVAIFQAATQIHEQTLTFVPK 54
>gi|328948399|ref|YP_004365736.1| flagellar biosynthetic protein FliQ [Treponema succinifaciens DSM
2489]
gi|328448723|gb|AEB14439.1| flagellar biosynthetic protein FliQ [Treponema succinifaciens DSM
2489]
Length = 89
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 4/64 (6%)
Query: 8 EIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAP 67
+ R + + AP+L +A+ +G+++A QA T IQE TLTF+PK F+T++
Sbjct: 8 NLVRGGILQVFLMCAPILGAALLVGLIVAIFQATTSIQEQTLTFLPK----FLTILFVIA 63
Query: 68 FIGG 71
+GG
Sbjct: 64 LLGG 67
>gi|304311111|ref|YP_003810709.1| Flagellar biosynthesis protein FliQ [gamma proteobacterium HdN1]
gi|301796844|emb|CBL45056.1| Flagellar biosynthesis protein FliQ [gamma proteobacterium HdN1]
Length = 89
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 50/86 (58%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ ++ ++ R A++ I+ +L ++ +G++++ QA TQI E TL+F P+++ F
Sbjct: 1 MSPDNIADLMREAVFLIVLMVTVILVPSLIVGLIVSIFQAATQINEQTLSFFPRLVVTFG 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
TLII ++ ++ F ++ I S
Sbjct: 61 TLIIFGGWLASELIDFTLKIIHEIPS 86
>gi|82795279|gb|ABB91648.1| type III secretion protein HrcS [Pseudomonas syringae pv.
tagetis]
Length = 88
Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 49/83 (59%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
+ L + + M+ ++ +AP L A+ +G++ + LQAL QIQ+ TL F K+ AV +TL +
Sbjct: 2 EALALFKQGMFLVVILTAPPLGVAVLVGVITSLLQALMQIQDQTLPFGIKLAAVGMTLAV 61
Query: 65 SAPFIGGQISSFVTLVLSRIQSS 87
+ +IG ++ F+ + I S
Sbjct: 62 TGRWIGVELIQFINMAFDLIARS 84
>gi|99082802|ref|YP_614956.1| export protein FliQ [Ruegeria sp. TM1040]
gi|99039082|gb|ABF65694.1| Flagellar biosynthetic protein fliQ [Ruegeria sp. TM1040]
Length = 92
Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 36/60 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
+ E + R + ++ S P+L +A+ +G+ + QALT IQE++LTFVPK+ + +
Sbjct: 2 LTEGIFYDTLRQGILAAITMSLPILIAALVIGLTVGLFQALTSIQEMSLTFVPKLAGILV 61
>gi|294636881|ref|ZP_06715211.1| flagellar biosynthetic protein FliQ [Edwardsiella tarda ATCC
23685]
gi|291089911|gb|EFE22472.1| flagellar biosynthetic protein FliQ [Edwardsiella tarda ATCC
23685]
Length = 83
Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 27/31 (87%)
Query: 39 QALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
QA TQI E+TL+F+PKI+AVF TL+++ P++
Sbjct: 33 QAATQINEMTLSFIPKILAVFATLVVAGPWM 63
>gi|227114167|ref|ZP_03827823.1| type III secretion protein [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
gi|227328490|ref|ZP_03832514.1| type III secretion protein [Pectobacterium carotovorum subsp.
carotovorum WPP14]
gi|34500878|gb|AAQ73906.1| HrcS [Pectobacterium carotovorum subsp. carotovorum]
Length = 86
Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 43/66 (65%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
+++ + R AM ++ SAP L A+ +G+LI+ LQA+ Q+Q+ TL F K+I+V + L +
Sbjct: 2 EIITLFRQAMVMVVLLSAPPLLVAVIVGVLISLLQAVMQLQDQTLPFAVKLISVGLALAL 61
Query: 65 SAPFIG 70
+IG
Sbjct: 62 CGRWIG 67
>gi|94986991|ref|YP_594924.1| translocation protein in type III secretion [Lawsonia
intracellularis PHE/MN1-00]
gi|94731240|emb|CAJ54603.1| probable translocation protein in type III secretion [Lawsonia
intracellularis PHE/MN1-00]
Length = 86
Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 45/83 (54%)
Query: 3 EADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITL 62
E + A++ +L S P + A +G+ ++ +QA+TQ+QE TL F K++AV +TL
Sbjct: 2 ETTTMTYTAKALYLVLVLSMPPILVASLVGLFVSLIQAITQLQEQTLAFGIKLLAVVLTL 61
Query: 63 IISAPFIGGQISSFVTLVLSRIQ 85
++ G++ + + +R
Sbjct: 62 FFMGGWLTGELYRYAEEIFNRFH 84
>gi|238920322|ref|YP_002933837.1| flagellar biosynthetic protein FliQ, [Edwardsiella ictaluri
93-146]
gi|238869891|gb|ACR69602.1| flagellar biosynthetic protein FliQ, putative [Edwardsiella
ictaluri 93-146]
Length = 89
Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 27/31 (87%)
Query: 39 QALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
QA TQI E+TL+F+PKI+AVF TL+++ P++
Sbjct: 39 QAATQINEMTLSFIPKILAVFATLVVAGPWM 69
>gi|302878288|ref|YP_003846852.1| flagellar biosynthetic protein FliQ [Gallionella
capsiferriformans ES-2]
gi|302581077|gb|ADL55088.1| flagellar biosynthetic protein FliQ [Gallionella
capsiferriformans ES-2]
Length = 89
Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 36/54 (66%)
Query: 31 LGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSRI 84
+G++++ QA TQI E TL+F+PK++ +F+ L+I+ P++ + F+ + I
Sbjct: 31 IGLVVSIFQAATQINEQTLSFIPKLVGIFVVLVIAGPWMVTMMVDFIRRLYGNI 84
>gi|253688598|ref|YP_003017788.1| type III secretion protein, HrpO family [Pectobacterium
carotovorum subsp. carotovorum PC1]
gi|251755176|gb|ACT13252.1| type III secretion protein, HrpO family [Pectobacterium
carotovorum subsp. carotovorum PC1]
Length = 86
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 43/66 (65%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
+++ + R AM ++ SAP L A+ +G+LI+ LQA+ Q+Q+ TL F K+I+V + L +
Sbjct: 2 EIITLFRQAMVMVVLLSAPPLLVAVIVGVLISLLQAVMQLQDQTLPFAVKLISVGLALAL 61
Query: 65 SAPFIG 70
+IG
Sbjct: 62 CGRWIG 67
>gi|313901465|ref|ZP_07834921.1| flagellar biosynthetic protein FliQ [Thermaerobacter subterraneus
DSM 13965]
gi|313468271|gb|EFR63729.1| flagellar biosynthetic protein FliQ [Thermaerobacter subterraneus
DSM 13965]
Length = 90
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 45/69 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +A VL + R A+WT L +APVL + +G+ I+ LQA TQ+ E TL FVPKI+A
Sbjct: 2 MTDAMVLTVGREALWTGLLVAAPVLLLTVAVGVAISILQAATQVTEQTLVFVPKILAAAA 61
Query: 61 TLIISAPFI 69
L++ P++
Sbjct: 62 ALLLFGPWM 70
>gi|269139498|ref|YP_003296199.1| flagellar biosynthesis pathway, component FliQ [Edwardsiella
tarda EIB202]
gi|267985159|gb|ACY84988.1| flagellar biosynthesis pathway, component FliQ [Edwardsiella
tarda EIB202]
gi|304559387|gb|ADM42051.1| Flagellar biosynthesis protein FliQ [Edwardsiella tarda FL6-60]
Length = 89
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 27/31 (87%)
Query: 39 QALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
QA TQI E+TL+F+PKI+AVF TL+++ P++
Sbjct: 39 QAATQINEMTLSFIPKILAVFATLVVAGPWM 69
>gi|83589639|ref|YP_429648.1| flagellar biosynthetic protein FliQ [Moorella thermoacetica ATCC
39073]
gi|83572553|gb|ABC19105.1| flagellar biosynthetic protein FliQ [Moorella thermoacetica ATCC
39073]
Length = 89
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 53/86 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + V+ +AR A+ T L +AP L ++ +G+ I+ LQA TQIQE TLTFVPKIIAV +
Sbjct: 1 MTQEFVIHLAREALTTALLLAAPALSLSLLVGVGISILQATTQIQEQTLTFVPKIIAVIL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
+++ ++ + F T + + S
Sbjct: 61 GMLLLGSWMLNTLIQFTTDIFGNLGS 86
>gi|281411925|ref|YP_003346004.1| flagellar biosynthetic protein FliQ [Thermotoga naphthophila
RKU-10]
gi|281373028|gb|ADA66590.1| flagellar biosynthetic protein FliQ [Thermotoga naphthophila
RKU-10]
Length = 88
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 48/77 (62%)
Query: 7 LEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISA 66
L+I ++ + +L P L ++ +G++I+ QA+TQI E TL F P+II +F+T++ +
Sbjct: 7 LDIMKSGISLLLKIIVPPLVVSLIVGLVISIFQAVTQIHEQTLMFAPRIIVLFLTILFLS 66
Query: 67 PFIGGQISSFVTLVLSR 83
++ +I F + +L +
Sbjct: 67 GWMAQKILDFFSEMLQK 83
>gi|295678048|ref|YP_003606572.1| flagellar biosynthetic protein FliQ [Burkholderia sp. CCGE1002]
gi|295437891|gb|ADG17061.1| flagellar biosynthetic protein FliQ [Burkholderia sp. CCGE1002]
Length = 89
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 54/86 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ +A AM+ L +AP+L A+ +G++++ QA TQI E TL+F+PK++A+
Sbjct: 1 MTPEAVMTLAHHAMYIGLMMAAPLLLVALVVGLVVSLFQAATQINESTLSFIPKLLAIAA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
TL+I+ P++ + ++ L+ I +
Sbjct: 61 TLVIAGPWMLTTMLDYLRQTLTSIPT 86
>gi|315140193|gb|ADT81077.1| RscS [Pseudomonas fluorescens]
Length = 84
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 42/66 (63%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
D L + + ++ SAP L A+ +G+L + +QAL QIQ+ TL F K++AV +TL++
Sbjct: 2 DALTLFKEGTLLVVLLSAPPLIVAVIVGVLTSLVQALMQIQDQTLPFGIKLVAVGLTLLV 61
Query: 65 SAPFIG 70
+ +IG
Sbjct: 62 TGRWIG 67
>gi|293605017|ref|ZP_06687412.1| flagellar biosynthetic protein FliQ [Achromobacter piechaudii
ATCC 43553]
gi|292816586|gb|EFF75672.1| flagellar biosynthetic protein FliQ [Achromobacter piechaudii
ATCC 43553]
Length = 89
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 53/84 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ +A AM +L+ + P+L + +G++I+ QA TQI E+TL+F+PK++A+
Sbjct: 1 MTAETVMTMAYQAMKIVLAMAGPLLLVVLVVGLVISIFQAATQINEMTLSFIPKLLAMCG 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
L++ P++ G + ++ ++ +I
Sbjct: 61 VLVLLGPWLIGVMVDYIRQLIGQI 84
>gi|326315332|ref|YP_004233004.1| type III secretion protein, HrpO family [Acidovorax avenae subsp.
avenae ATCC 19860]
gi|89111160|dbj|BAE80250.1| HrcS [Acidovorax avenae subsp. avenae]
gi|89111193|dbj|BAE80282.1| HrcS [Acidovorax avenae subsp. avenae]
gi|323372168|gb|ADX44437.1| type III secretion protein, HrpO family [Acidovorax avenae subsp.
avenae ATCC 19860]
Length = 87
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 47/76 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN +++++ A+ L S P + A +G+L+A +QA+T +Q+ +++ K+I V +
Sbjct: 1 MNHDNIVQLTSEALMLCLLLSLPAVAVAAIVGLLVALVQAVTSLQDQSISQGIKLICVTV 60
Query: 61 TLIISAPFIGGQISSF 76
T+ +SAP++G + F
Sbjct: 61 TVAVSAPWVGSTVLQF 76
>gi|15643460|ref|NP_228506.1| flagellar biosynthesis protein FliQ [Thermotoga maritima MSB8]
gi|148269378|ref|YP_001243838.1| flagellar biosynthetic protein FliQ [Thermotoga petrophila RKU-1]
gi|170288036|ref|YP_001738274.1| flagellar biosynthetic protein FliQ [Thermotoga sp. RQ2]
gi|4981220|gb|AAD35779.1|AE001741_12 flagellar biosynthesis protein FliQ [Thermotoga maritima MSB8]
gi|147734922|gb|ABQ46262.1| flagellar biosynthetic protein FliQ [Thermotoga petrophila RKU-1]
gi|170175539|gb|ACB08591.1| flagellar biosynthetic protein FliQ [Thermotoga sp. RQ2]
Length = 88
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 48/77 (62%)
Query: 7 LEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISA 66
L+I ++ + +L P L ++ +G++I+ QA+TQI E TL F P+II +F+T++ +
Sbjct: 7 LDIMKSGISLLLEIIVPPLVVSLIVGLVISIFQAVTQIHEQTLMFAPRIIVLFLTILFLS 66
Query: 67 PFIGGQISSFVTLVLSR 83
++ +I F + +L +
Sbjct: 67 GWMAQKILDFFSEMLQK 83
>gi|330876193|gb|EGH10342.1| type III secretion component [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
gi|330963709|gb|EGH63969.1| type III secretion component [Pseudomonas syringae pv. actinidiae
str. M302091]
Length = 89
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 48/83 (57%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + L + A+ T+L SAP L A+ +G+ + LQALTQIQ+ TL V K++AV +
Sbjct: 1 MGQDVFLSLMNKALMTVLLLSAPALIVAIVVGLSVGLLQALTQIQDQTLPQVVKLVAVLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSR 83
++ P + GQ++ LVL
Sbjct: 61 VIVFVGPLLAGQVAELGNLVLDN 83
>gi|321399658|emb|CBJ44659.1| putative type III secretion system protein HrcS [Pseudomonas sp.
MTR-J5-521]
Length = 83
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
D L + + M +L S AP L A+ +G+L + +QAL QIQ+ TL F K++AV +TL++
Sbjct: 2 DALTLFKEGMLLVLLS-APPLIVAVVVGVLTSLVQALMQIQDQTLPFGIKLVAVGLTLLV 60
Query: 65 SAPFIG 70
+ ++G
Sbjct: 61 TGRWVG 66
>gi|313681179|ref|YP_004058917.1| flagellar biosynthetic protein fliq [Sulfuricurvum kujiense DSM
16994]
gi|313154039|gb|ADR32717.1| flagellar biosynthetic protein FliQ [Sulfuricurvum kujiense DSM
16994]
Length = 89
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 38/56 (67%)
Query: 21 SAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSF 76
S P L MFLG+ ++ QA TQI E+TL+F+PKII + + +I++ P++ ++ F
Sbjct: 21 SLPALLVGMFLGLAVSIFQATTQINEMTLSFIPKIIGIVVVIILTMPWMMNEMQDF 76
>gi|34557827|ref|NP_907642.1| flagellar biosynthesis protein FliQ [Wolinella succinogenes DSM
1740]
gi|34483545|emb|CAE10542.1| FLAGELLAR BIOSYNTHETIC PROTEIN [Wolinella succinogenes]
Length = 88
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 49/84 (58%)
Query: 3 EADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITL 62
EA ++ +A L S P+L + + +G+LI+ QA TQI E TLTFVPKI+ V + +
Sbjct: 2 EAKLMALAIETYKITLILSLPMLMAGLVVGLLISIFQATTQINEQTLTFVPKILVVIVVV 61
Query: 63 IISAPFIGGQISSFVTLVLSRIQS 86
I++ P++ + F T ++ I
Sbjct: 62 ILTMPWMMNMLIDFTTRLIKMIPD 85
>gi|114332026|ref|YP_748248.1| flagellar biosynthetic protein FliQ [Nitrosomonas eutropha C91]
gi|114309040|gb|ABI60283.1| flagellar biosynthetic protein FliQ [Nitrosomonas eutropha C91]
Length = 91
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 31/38 (81%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
G+ I+ QA TQI E+TL+F+PK++A+F+TL ++ P++
Sbjct: 32 GLAISIFQAATQINEMTLSFIPKLLAIFLTLALAGPWM 69
>gi|212702656|ref|ZP_03310784.1| hypothetical protein DESPIG_00684 [Desulfovibrio piger ATCC
29098]
gi|212673928|gb|EEB34411.1| hypothetical protein DESPIG_00684 [Desulfovibrio piger ATCC
29098]
Length = 85
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 48/77 (62%)
Query: 7 LEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISA 66
++ A A++ ++ S P + A +GI+++ +QA+TQ+QE TL F K++AV +TL +
Sbjct: 5 IDYAVKALYLVMILSLPPIIVASVVGIVLSLIQAITQLQEQTLAFGVKLLAVGLTLFLMG 64
Query: 67 PFIGGQISSFVTLVLSR 83
++ G+I + + +R
Sbjct: 65 KWLSGEILRYSEDIFNR 81
>gi|28868602|ref|NP_791221.1| type III secretion protein HrcS [Pseudomonas syringae pv. tomato
str. DC3000]
gi|213968265|ref|ZP_03396409.1| type III secretion protein HrcS [Pseudomonas syringae pv. tomato
T1]
gi|301381806|ref|ZP_07230224.1| type III secretion protein HrcS [Pseudomonas syringae pv. tomato
Max13]
gi|302061997|ref|ZP_07253538.1| type III secretion protein HrcS [Pseudomonas syringae pv. tomato
K40]
gi|302135079|ref|ZP_07261069.1| type III secretion protein HrcS [Pseudomonas syringae pv. tomato
NCPPB 1108]
gi|11276517|gb|AAG33885.1| HrcS [Pseudomonas syringae pv. tomato]
gi|28851840|gb|AAO54916.1| type III secretion protein HrcS [Pseudomonas syringae pv. tomato
str. DC3000]
gi|213926903|gb|EEB60454.1| type III secretion protein HrcS [Pseudomonas syringae pv. tomato
T1]
gi|330872919|gb|EGH07068.1| type III secretion protein HrcS [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
gi|330963056|gb|EGH63316.1| type III secretion protein HrcS [Pseudomonas syringae pv.
actinidiae str. M302091]
gi|331015104|gb|EGH95160.1| type III secretion protein HrcS [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 88
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 49/83 (59%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
+ L + + M+ ++ +AP L A+ +G++ + LQAL QIQ+ TL F K+ AV +TL +
Sbjct: 2 EALALFKQGMFLVVILTAPPLGVAVLVGVITSLLQALMQIQDQTLPFGIKLAAVGMTLAM 61
Query: 65 SAPFIGGQISSFVTLVLSRIQSS 87
+ +IG ++ F+ + I S
Sbjct: 62 TGRWIGVELIQFINMAFDLIARS 84
>gi|167560942|ref|ZP_02353858.1| flagellar biosynthesis protein FliQ [Burkholderia oklahomensis
EO147]
gi|167568201|ref|ZP_02361075.1| flagellar biosynthesis protein FliQ [Burkholderia oklahomensis
C6786]
Length = 90
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 57/86 (66%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +V+ +A AM+ L +AP+L A+ +G++++ QA TQI E TL+F+PK++AV
Sbjct: 1 MTPENVMTLAHQAMYIGLLLAAPLLLVALAVGLVVSLFQAATQINEATLSFIPKLLAVAA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
T++I+ P++ ++ ++ +L R+ +
Sbjct: 61 TMVIAGPWMLSTMTDYLREILLRVAT 86
>gi|317048610|ref|YP_004116258.1| flagellar biosynthetic protein FliQ [Pantoea sp. At-9b]
gi|316950227|gb|ADU69702.1| flagellar biosynthetic protein FliQ [Pantoea sp. At-9b]
Length = 89
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 36/53 (67%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSRI 84
G++I+ LQA TQ+ E TL+F+PKI+AV T +I+ P++ I ++ + S +
Sbjct: 32 GLIISLLQAATQVNEQTLSFIPKILAVAATAVIAGPWMLNLILDYMRTLFSNL 84
>gi|292493586|ref|YP_003529025.1| flagellar biosynthetic protein FliQ [Nitrosococcus halophilus
Nc4]
gi|291582181|gb|ADE16638.1| flagellar biosynthetic protein FliQ [Nitrosococcus halophilus
Nc4]
Length = 89
Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 31/38 (81%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
G+L++ QA TQI E+TL+F+PK++A+ +T+ ++ P++
Sbjct: 32 GLLVSMFQAATQINEMTLSFIPKLLAILLTMALAGPWM 69
>gi|219685768|ref|ZP_03540579.1| flagellar biosynthetic protein FliQ [Borrelia garinii Far04]
gi|219672707|gb|EED29735.1| flagellar biosynthetic protein FliQ [Borrelia garinii Far04]
Length = 87
Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 47/66 (71%)
Query: 21 SAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLV 80
SAP+L A+ +G+LI+ QA+T IQ+ L+F+PKII + +T++I P+I ++ F ++
Sbjct: 21 SAPMLIIALIVGLLISIFQAITSIQDQALSFIPKIIVILLTIVIFGPWILNKLMQFTYMI 80
Query: 81 LSRIQS 86
+++Q+
Sbjct: 81 FNQLQN 86
>gi|307731353|ref|YP_003908577.1| flagellar biosynthetic protein FliQ [Burkholderia sp. CCGE1003]
gi|323527703|ref|YP_004229856.1| flagellar biosynthetic protein FliQ [Burkholderia sp. CCGE1001]
gi|307585888|gb|ADN59286.1| flagellar biosynthetic protein FliQ [Burkholderia sp. CCGE1003]
gi|323384705|gb|ADX56796.1| flagellar biosynthetic protein FliQ [Burkholderia sp. CCGE1001]
Length = 89
Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 55/84 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN V+ +A AM+ L +AP+L A+ +G++++ QA TQI E TL+F+PK++A+ +
Sbjct: 1 MNSESVMTLAHQAMYVGLLLAAPLLLVALVVGLVVSLFQAATQINESTLSFIPKLLAIAV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
T++I+ P++ + ++ L+ I
Sbjct: 61 TMVIAGPWMLTTMLDYLRQTLTNI 84
>gi|304398866|ref|ZP_07380736.1| flagellar biosynthetic protein FliQ [Pantoea sp. aB]
gi|308187301|ref|YP_003931432.1| flagellar biosynthetic protein fliQ [Pantoea vagans C9-1]
gi|304353570|gb|EFM17947.1| flagellar biosynthetic protein FliQ [Pantoea sp. aB]
gi|308057811|gb|ADO09983.1| Probable flagellar biosynthetic protein fliQ [Pantoea vagans
C9-1]
Length = 89
Score = 43.5 bits (101), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 30/38 (78%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
G+LI+ +QA TQ+ E TL+F+PKI+AV T II+ P++
Sbjct: 32 GLLISLIQAATQVNEQTLSFIPKILAVATTGIIAGPWM 69
>gi|302185376|ref|ZP_07262049.1| flagellar biosynthesis protein FliQ [Pseudomonas syringae pv.
syringae 642]
Length = 89
Score = 43.5 bits (101), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +++ R A+W A ++ ++ G+L+A QA TQI E TL+F+P+++ + I
Sbjct: 1 MTPEVAVDLFREALWLTTVLVAILVVPSLLCGLLVAMFQAATQINEQTLSFLPRLLVMLI 60
Query: 61 TLIISAPFI 69
TLI P++
Sbjct: 61 TLIAIGPWL 69
>gi|254469622|ref|ZP_05083027.1| type III secretion protein, HrpO family [Pseudovibrio sp. JE062]
gi|211961457|gb|EEA96652.1| type III secretion protein, HrpO family [Pseudovibrio sp. JE062]
Length = 89
Score = 43.5 bits (101), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ D + AM ++ S P + A +G+ ++ LQALTQ+QE T+ F K+IAV +
Sbjct: 1 MSPEDAVYRISEAMILVMMLSLPPIIVASLVGLAVSLLQALTQMQEQTIQFGVKLIAVAL 60
Query: 61 TLIISAPFIGGQISSF 76
TL + + F+G + F
Sbjct: 61 TLFMMSSFLGSETIGF 76
>gi|51587283|emb|CAE53667.1| putative HrcS [Pseudomonas fluorescens bv. I]
Length = 87
Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 46/77 (59%)
Query: 11 RAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIG 70
+ M ++ +AP L A+ +G++ + +QAL Q+Q+ TL F K++AV ITLI++ +IG
Sbjct: 8 KQGMLLVVMLTAPPLIVAVVVGVMTSLVQALMQVQDQTLPFGIKLVAVGITLIMTGRWIG 67
Query: 71 GQISSFVTLVLSRIQSS 87
++ + + I S
Sbjct: 68 VELIQLMNVTFDMIGRS 84
>gi|73532642|dbj|BAE19879.1| type III secretion apparatus [Edwardsiella tarda]
Length = 67
Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 44/65 (67%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +A ++++A +W +L S PV+ A +G+L+ +QALTQIQ+ T++F K++A +
Sbjct: 1 MGKAQLVQLASELLWLVLILSLPVVLVASLVGVLVGLVQALTQIQDQTVSFAIKLVAASV 60
Query: 61 TLIIS 65
TL ++
Sbjct: 61 TLALT 65
>gi|56419770|ref|YP_147088.1| flagellar biosynthesis protein FliQ [Geobacillus kaustophilus
HTA426]
gi|261419435|ref|YP_003253117.1| flagellar biosynthesis protein FliQ [Geobacillus sp. Y412MC61]
gi|297530590|ref|YP_003671865.1| flagellar biosynthetic protein FliQ [Geobacillus sp. C56-T3]
gi|319766250|ref|YP_004131751.1| flagellar biosynthetic protein FliQ [Geobacillus sp. Y412MC52]
gi|56379612|dbj|BAD75520.1| flagellar protein required for flagellar formation [Geobacillus
kaustophilus HTA426]
gi|261375892|gb|ACX78635.1| flagellar biosynthetic protein FliQ [Geobacillus sp. Y412MC61]
gi|297253842|gb|ADI27288.1| flagellar biosynthetic protein FliQ [Geobacillus sp. C56-T3]
gi|317111116|gb|ADU93608.1| flagellar biosynthetic protein FliQ [Geobacillus sp. Y412MC52]
Length = 89
Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 50/81 (61%)
Query: 6 VLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIIS 65
++ +A ++ +L P+L ++ +G++++ QA TQIQE TL FVPKI+AV + L+
Sbjct: 6 IIRLAEQGVYIVLVVCGPLLLLSLAVGLVVSIFQAATQIQEQTLAFVPKIVAVLLGLVFF 65
Query: 66 APFIGGQISSFVTLVLSRIQS 86
P++ ++ S+ + + + S
Sbjct: 66 GPWMLSKMVSYAHDIFNNLAS 86
>gi|225849158|ref|YP_002729322.1| flagellar biosynthetic protein FliQ [Sulfurihydrogenibium
azorense Az-Fu1]
gi|225643097|gb|ACN98147.1| flagellar biosynthetic protein FliQ [Sulfurihydrogenibium
azorense Az-Fu1]
Length = 89
Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 39/64 (60%)
Query: 21 SAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLV 80
S PV+ +G++I+ +A TQI E+T+TFVPKI+A I LII ++ ++ + +
Sbjct: 21 STPVILLIFIVGLIISIFEAATQINEMTITFVPKIVAAVIGLIIFGSWMTTELVDYTRQM 80
Query: 81 LSRI 84
L I
Sbjct: 81 LETI 84
>gi|51103000|gb|AAT96147.1| HrcS [Pseudomonas viridiflava]
gi|51103055|gb|AAT96201.1| HrcS [Pseudomonas viridiflava]
gi|330957487|gb|EGH57747.1| type III secretion component protein HrcS [Pseudomonas syringae
pv. maculicola str. ES4326]
Length = 88
Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 49/83 (59%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
+ L + + M+ ++ +AP L A+ +G++ + LQAL QIQ+ TL F K+ AV +TL +
Sbjct: 2 EALALFKQGMFLVVILTAPPLAVAVLVGVITSLLQALMQIQDQTLPFGIKLGAVGLTLAM 61
Query: 65 SAPFIGGQISSFVTLVLSRIQSS 87
+ +IG ++ F+ + I S
Sbjct: 62 TGRWIGVELIQFINMAFDLIARS 84
>gi|218706361|ref|YP_002413880.1| surface presentation of antigens protein [Escherichia coli UMN026]
gi|218433458|emb|CAR14360.1| surface presentation of antigens protein [Escherichia coli UMN026]
Length = 115
Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%)
Query: 2 NEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFIT 61
N D++ A++ IL SA + A F+G+L+ Q +TQ+QE TL F K++ V I
Sbjct: 29 NMDDIVFAGNRALYLILVMSAGPIAVATFVGLLVGLFQTVTQLQEQTLPFGVKLLCVSIC 88
Query: 62 LIISAPFIGGQISSF 76
+ + + G ++ SF
Sbjct: 89 FFLMSGWYGEKLYSF 103
>gi|126174199|ref|YP_001050348.1| HrpO family type III secretion protein [Shewanella baltica OS155]
gi|304408582|ref|ZP_07390203.1| type III secretion protein, HrpO family [Shewanella baltica
OS183]
gi|307305410|ref|ZP_07585158.1| type III secretion protein, HrpO family [Shewanella baltica
BA175]
gi|125997404|gb|ABN61479.1| type III secretion protein, HrpO family [Shewanella baltica
OS155]
gi|304352403|gb|EFM16800.1| type III secretion protein, HrpO family [Shewanella baltica
OS183]
gi|306911713|gb|EFN42138.1| type III secretion protein, HrpO family [Shewanella baltica
BA175]
Length = 89
Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 36/51 (70%)
Query: 34 LIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSRI 84
L++ +QALTQIQ+ TL F+ K+IAV +TL++ ++G + ++ ++ +I
Sbjct: 34 LVSLIQALTQIQDQTLQFLIKLIAVCVTLVVCYHWMGSSLLNYASMAFDQI 84
>gi|120609151|ref|YP_968829.1| HrpO family type III secretion protein [Acidovorax citrulli
AAC00-1]
gi|58700624|gb|AAW81015.1| HrcS [Acidovorax citrulli]
gi|120587615|gb|ABM31055.1| type III secretion protein, HrpO family [Acidovorax citrulli
AAC00-1]
Length = 87
Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 46/76 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN +++++ A+ L S P + A +G+L+A +QA+T +Q+ ++ K+I V +
Sbjct: 1 MNHDNIVQLTSEALMLCLLLSLPAVAVAAIVGLLVALVQAVTSLQDQAISQGIKLICVTV 60
Query: 61 TLIISAPFIGGQISSF 76
T+ +SAP++G + F
Sbjct: 61 TVAVSAPWVGSTVLQF 76
>gi|29840694|ref|NP_829800.1| type III secretion inner membrane protein SctS [Chlamydophila
caviae GPIC]
gi|29835044|gb|AAP05678.1| type III secretion inner membrane protein SctS [Chlamydophila
caviae GPIC]
Length = 94
Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 48/82 (58%), Gaps = 4/82 (4%)
Query: 3 EADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITL 62
++ + E + ++ IL SAP + A +GI++A QA TQIQE T F K++ +F TL
Sbjct: 9 KSMLFEYSYQSLLLILIISAPPIILASIVGIMVAIFQAATQIQEQTFAFAIKLVVIFGTL 68
Query: 63 IISAPFIGGQISSFVTLVLSRI 84
+IS GG +SS + S+I
Sbjct: 69 MIS----GGWLSSMIFRFASQI 86
>gi|119476306|ref|ZP_01616657.1| flagellar biosynthetic protein FliQ [marine gamma proteobacterium
HTCC2143]
gi|119450170|gb|EAW31405.1| flagellar biosynthetic protein FliQ [marine gamma proteobacterium
HTCC2143]
Length = 89
Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 52/86 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+++ R A+ I+ + ++ ++ +G++I+ QA TQI E TL+F+P++I
Sbjct: 1 MTPGVVIDLFREALLLIILLVSIMVVPSLIVGLVISVFQAATQINEQTLSFLPRLITTLG 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
LI++ P++ ++ F T ++S I +
Sbjct: 61 MLILAGPYLLNELIDFTTRLVSTIPT 86
>gi|291276806|ref|YP_003516578.1| flagellar biosynthetic protein [Helicobacter mustelae 12198]
gi|290964000|emb|CBG39839.1| flagellar biosynthetic protein [Helicobacter mustelae 12198]
Length = 83
Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 44/66 (66%)
Query: 21 SAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLV 80
S P+LF + +G++++ QA TQI E+TL+FVPKI+AV +I + P++ + + T +
Sbjct: 15 SLPILFVGLVVGLVVSIFQATTQINEMTLSFVPKILAVIGVIIFTMPWMLNMLMDYTTRL 74
Query: 81 LSRIQS 86
++ I S
Sbjct: 75 INLIPS 80
>gi|299822253|ref|ZP_07054139.1| flagellar biosynthetic protein FliQ [Listeria grayi DSM 20601]
gi|299815782|gb|EFI83020.1| flagellar biosynthetic protein FliQ [Listeria grayi DSM 20601]
Length = 90
Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 51/86 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN V+E+ + ++ L+ PV + + IL+A + A+ QIQ+ +LTF+PKIIA +
Sbjct: 1 MNLTPVMEVFQKFFYSGLTIILPVSIVCLVVVILVAIIMAMMQIQDQSLTFLPKIIAFVV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
L I P++ G ++ + + ++I +
Sbjct: 61 ALFILGPWMFGHMTDLIVSIFAKIPT 86
>gi|83814167|ref|YP_446685.1| flagellar biosynthetic protein FliQ [Salinibacter ruber DSM
13855]
gi|294508621|ref|YP_003572680.1| flagellar biosynthetic protein fliQ [Salinibacter ruber M8]
gi|83755561|gb|ABC43674.1| flagellar biosynthetic protein FliQ [Salinibacter ruber DSM
13855]
gi|294344950|emb|CBH25728.1| Flagellar biosynthetic protein fliQ [Salinibacter ruber M8]
Length = 89
Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 40/65 (61%)
Query: 22 APVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVL 81
P+L A+ GI+++ QA+T +QE+TL+F+PK+IA+ + P++ ++ F +
Sbjct: 22 GPMLGMALLAGIVVSLFQAVTSMQEMTLSFIPKLIAIAVVFFFMMPWMIQMMTDFTAEIF 81
Query: 82 SRIQS 86
+ I S
Sbjct: 82 AAIPS 86
>gi|34498063|ref|NP_902278.1| type III secretion apparatus protein EscS [Chromobacterium
violaceum ATCC 12472]
gi|34103918|gb|AAQ60278.1| type III secretion apparatus protein EscS [Chromobacterium
violaceum ATCC 12472]
Length = 89
Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 56/84 (66%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+EA + ++A MW +L S PV+ A F+G+L++ +QALTQ+Q+ T+ F+ K++AV +
Sbjct: 1 MSEAMIAQLATQMMWLVLLLSLPVVVVASFVGVLVSLVQALTQVQDQTVQFLVKLLAVSV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
TL ++ ++G + ++ L +I
Sbjct: 61 TLAMTYHWMGDVLLNYAGLAFDQI 84
>gi|317051544|ref|YP_004112660.1| flagellar biosynthetic protein FliQ [Desulfurispirillum indicum
S5]
gi|316946628|gb|ADU66104.1| flagellar biosynthetic protein FliQ [Desulfurispirillum indicum
S5]
Length = 89
Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 40/56 (71%)
Query: 21 SAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSF 76
++P+L + +G+ I+ +QA T +QE+TLTF+PKI+ V + L+ P++ ++++F
Sbjct: 21 ASPMLVLGLIVGVAISIVQAATSVQEMTLTFIPKIVIVVLGLMYFLPWMIAKLTAF 76
>gi|260772333|ref|ZP_05881249.1| flagellar biosynthesis protein FliQ [Vibrio metschnikovii CIP
69.14]
gi|260611472|gb|EEX36675.1| flagellar biosynthesis protein FliQ [Vibrio metschnikovii CIP
69.14]
Length = 89
Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 46/81 (56%)
Query: 8 EIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAP 67
E+ R A+W +L ++ ++ +G+++A QA T I E TL+F+P++I + L+I A
Sbjct: 8 ELFREALWLVLIMVCAIIVPSLIIGLVVAVFQAATSINEQTLSFLPRLIVTLLALMIFAH 67
Query: 68 FIGGQISSFVTLVLSRIQSSL 88
++ + F ++ R+ L
Sbjct: 68 WMTQMLMEFFFAMIERLPQVL 88
>gi|254506873|ref|ZP_05119012.1| flagellar biosynthetic protein FliQ [Vibrio parahaemolyticus 16]
gi|219550158|gb|EED27144.1| flagellar biosynthetic protein FliQ [Vibrio parahaemolyticus 16]
Length = 89
Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 46/81 (56%)
Query: 8 EIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAP 67
E+ R A+W +L ++ ++ +G+++A QA T I E TL+F+P++I + L++ A
Sbjct: 8 ELFRDALWMVLIMVCAIIIPSLLIGLVVAIFQAATSINEQTLSFLPRLIVTLLALMLFAH 67
Query: 68 FIGGQISSFVTLVLSRIQSSL 88
++ + F ++ R+ L
Sbjct: 68 WMTQMMMEFFFGIIERLPQVL 88
>gi|89897882|ref|YP_514992.1| type III secretion flagellar biosynthesis inner membrane protein
[Chlamydophila felis Fe/C-56]
gi|89331254|dbj|BAE80847.1| type III secretion flagellar biosynthesis inner membrane protein
[Chlamydophila felis Fe/C-56]
Length = 94
Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 3 EADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITL 62
++ + E + ++ IL SAP + A +GI++A QA TQIQE T F K++ +F TL
Sbjct: 9 KSVLFEYSYQSLLLILIISAPPIILASIVGIVVAIFQAATQIQEQTFAFAIKLVVIFGTL 68
Query: 63 IISAPFIGGQISSFVTLVLSR 83
IIS ++ I F + +
Sbjct: 69 IISGGWLSNMIFRFASQIFQN 89
>gi|224417762|ref|ZP_03655768.1| flagellar biosynthesis protein FliQ [Helicobacter canadensis MIT
98-5491]
gi|253827105|ref|ZP_04869990.1| flagellar biosynthesis protein [Helicobacter canadensis MIT
98-5491]
gi|313141303|ref|ZP_07803496.1| flagellar biosynthesis protein FliQ [Helicobacter canadensis MIT
98-5491]
gi|253510511|gb|EES89170.1| flagellar biosynthesis protein [Helicobacter canadensis MIT
98-5491]
gi|313130334|gb|EFR47951.1| flagellar biosynthesis protein FliQ [Helicobacter canadensis MIT
98-5491]
Length = 88
Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 45/74 (60%)
Query: 3 EADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITL 62
EA ++ +A L S P+L + +G+LI+ QA TQI E+TLTFVPKI+AV + +
Sbjct: 2 EAQLMNLAIETYKITLILSLPMLLVGLVVGLLISIFQATTQINEMTLTFVPKILAVIVVI 61
Query: 63 IISAPFIGGQISSF 76
I + P++ + F
Sbjct: 62 IFTMPWMLNMLIDF 75
>gi|160875391|ref|YP_001554707.1| HrpO family type III secretion protein [Shewanella baltica OS195]
gi|160860913|gb|ABX49447.1| type III secretion protein, HrpO family [Shewanella baltica
OS195]
gi|315267591|gb|ADT94444.1| type III secretion protein, HrpO family [Shewanella baltica
OS678]
Length = 89
Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 36/51 (70%)
Query: 34 LIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSRI 84
L++ +QALTQIQ+ TL F+ K+IAV +TL++ ++G + ++ ++ +I
Sbjct: 34 LVSLIQALTQIQDQTLQFLIKLIAVCVTLVVCYHWMGSSLLNYASMAFDQI 84
>gi|330961234|gb|EGH61494.1| flagellar biosynthesis protein FliQ [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 89
Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 41/69 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +++ R A+W A ++ ++ G+L+A QA TQI E TL+F+P+++ + +
Sbjct: 1 MTPEVAVDLFREALWLTTVLVAILVVPSLLCGLLVAMFQAATQINEQTLSFLPRLLVMLV 60
Query: 61 TLIISAPFI 69
TLI P++
Sbjct: 61 TLIAIGPWL 69
>gi|323496544|ref|ZP_08101598.1| flagellar biosynthesis protein FliQ [Vibrio sinaloensis DSM
21326]
gi|323318388|gb|EGA71345.1| flagellar biosynthesis protein FliQ [Vibrio sinaloensis DSM
21326]
Length = 89
Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 46/81 (56%)
Query: 8 EIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAP 67
E+ R A+W +L ++ ++ +G+++A QA T I E TL+F+P++I + L++ A
Sbjct: 8 ELFRDALWMVLIMVCAIIIPSLLIGLVVAIFQAATSINEQTLSFLPRLIVTLLALMLFAH 67
Query: 68 FIGGQISSFVTLVLSRIQSSL 88
++ + F ++ R+ L
Sbjct: 68 WMTQMMMEFFFNLIERLPQVL 88
>gi|227112530|ref|ZP_03826186.1| flagellar biosynthesis protein FliQ [Pectobacterium carotovorum
subsp. brasiliensis PBR1692]
gi|227328347|ref|ZP_03832371.1| flagellar biosynthesis protein FliQ [Pectobacterium carotovorum
subsp. carotovorum WPP14]
gi|462611|sp|P34201|FLIQ_PECCC RecName: Full=Flagellar biosynthetic protein FliQ; AltName:
Full=Flagellar biosynthetic protein MopD
gi|296056|emb|CAA51477.1| mopD [Pectobacterium carotovorum]
Length = 89
Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 26/31 (83%)
Query: 39 QALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
QA TQI E+TL+F+PKI+ VF TL+I+ P++
Sbjct: 39 QAATQINEMTLSFIPKILTVFFTLVIAGPWM 69
>gi|326386957|ref|ZP_08208570.1| flagellar biosynthetic protein [Novosphingobium nitrogenifigens
DSM 19370]
gi|326208566|gb|EGD59370.1| flagellar biosynthetic protein [Novosphingobium nitrogenifigens
DSM 19370]
Length = 90
Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 48/83 (57%)
Query: 2 NEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFIT 61
+ + +L +A +W + PVL +++ +G+++ +QA T + E TLTFVPK+ +
Sbjct: 3 DTSSLLALADRMIWITALIATPVLLASLAVGLVVGVIQAATSVNEQTLTFVPKLAVTALV 62
Query: 62 LIISAPFIGGQISSFVTLVLSRI 84
L++ + G + F+ ++++I
Sbjct: 63 LVLLGGAMLGLVGDFLKDIMAQI 85
>gi|221635441|ref|YP_002523317.1| flagellar biosynthetic protein FliQ [Thermomicrobium roseum DSM
5159]
gi|221157420|gb|ACM06538.1| flagellar biosynthetic protein FliQ [Thermomicrobium roseum DSM
5159]
Length = 89
Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 44/63 (69%)
Query: 16 TILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISS 75
T L SAP+L + + +G+L++ LQA+TQ+ E TL F+PKI+ F+ L+ + ++G Q+++
Sbjct: 16 TTLLVSAPILLTILVVGLLVSVLQAVTQVNEQTLVFIPKIVITFLILLFAGSWMGRQLAT 75
Query: 76 FVT 78
T
Sbjct: 76 LAT 78
>gi|299066523|emb|CBJ37713.1| Flagellar biosynthesis protein Q [Ralstonia solanacearum CMR15]
Length = 58
Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 35/56 (62%)
Query: 31 LGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSRIQS 86
+G I+ LQ +TQ+QE +LTFVPK++ I+LI+ P++ + F + S I S
Sbjct: 1 MGFFISLLQVVTQVQENSLTFVPKLLTAVISLIVFGPWMLRKFVQFSVHLWSEIPS 56
>gi|239815244|ref|YP_002944154.1| export protein FliQ family 3 [Variovorax paradoxus S110]
gi|239801821|gb|ACS18888.1| export protein FliQ family 3 [Variovorax paradoxus S110]
Length = 60
Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 38/58 (65%)
Query: 29 MFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSRIQS 86
M +G+ ++ LQ +TQIQE++LTFVPK+ +I++ P++ +++ F + S I S
Sbjct: 1 MLVGVAVSVLQVVTQIQEMSLTFVPKLFTAGAVMILAGPWMLRKLTQFTVQLWSGIPS 58
>gi|94314221|ref|YP_587430.1| flagellar biosynthesis protein FliQ [Cupriavidus metallidurans
CH34]
gi|93358073|gb|ABF12161.1| flagellar biosynthesis protein FliQ [Cupriavidus metallidurans
CH34]
Length = 89
Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 35/51 (68%), Gaps = 3/51 (5%)
Query: 36 AFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSRIQS 86
+ QA TQI E+TLTF+PK+IA+F T+++ P++ I++FV + QS
Sbjct: 36 SLFQAATQINEMTLTFIPKLIALFATMVLVGPWM---INTFVDYMRQVFQS 83
>gi|153951007|ref|YP_001398955.1| flagellar biosynthesis protein FliQ [Campylobacter jejuni subsp.
doylei 269.97]
gi|152938453|gb|ABS43194.1| flagellar biosynthetic protein FliQ [Campylobacter jejuni subsp.
doylei 269.97]
Length = 89
Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 36/55 (65%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSRIQS 86
G++I+ QA TQI E+TL+FVPKII V + LI P++ + F +L++I +
Sbjct: 32 GLVISIFQATTQINEMTLSFVPKIILVVVILIFLMPWMTTTMMDFTENILNQIPT 86
>gi|261344131|ref|ZP_05971775.1| flagellar biosynthetic protein FliQ [Providencia rustigianii DSM
4541]
gi|282567723|gb|EFB73258.1| flagellar biosynthetic protein FliQ [Providencia rustigianii DSM
4541]
Length = 89
Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 37/51 (72%)
Query: 34 LIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSRI 84
+I+ LQA TQ+ E+TL+F+PKI++V T+II+ P++ ++ ++ + S +
Sbjct: 34 IISLLQAATQVNEMTLSFIPKILSVISTIIIAGPWMLNLLTDYMRQLFSNL 84
>gi|285018169|ref|YP_003375880.1| flagellar biosynthetic protein fliq [Xanthomonas albilineans GPE
PC73]
gi|283473387|emb|CBA15892.1| probable flagellar biosynthetic protein fliq [Xanthomonas
albilineans]
Length = 89
Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%)
Query: 11 RAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIG 70
R + T+L + P+L + + +G++I QA TQ+ E T+ F+ K+IA+ L + +
Sbjct: 11 RGGLVTVLWVAGPLLLAMLVVGVVIGVFQAATQLNEPTIAFIAKVIALTAMLFATGSMLL 70
Query: 71 GQISSFVTLVLSRI 84
+ + TL+ RI
Sbjct: 71 AHLVEYTTLLFQRI 84
>gi|62185508|ref|YP_220293.1| putative type III export protein [Chlamydophila abortus S26/3]
gi|329943277|ref|ZP_08292051.1| type III secretion , HrpO family protein [Chlamydophila psittaci
Cal10]
gi|332287855|ref|YP_004422756.1| secretion and cellular translocation protein S [Chlamydophila
psittaci 6BC]
gi|62148575|emb|CAH64347.1| putative type III export protein [Chlamydophila abortus S26/3]
gi|313848427|emb|CBY17431.1| putative type III export protein [Chlamydophila psittaci RD1]
gi|325507124|gb|ADZ18762.1| secretion and cellular translocation protein S [Chlamydophila
psittaci 6BC]
gi|328814824|gb|EGF84814.1| type III secretion , HrpO family protein [Chlamydophila psittaci
Cal10]
gi|328915117|gb|AEB55950.1| type III secretion system protein BsaX [Chlamydophila psittaci
6BC]
Length = 94
Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%)
Query: 3 EADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITL 62
++ + E + ++ IL SAP + A +GI++A QA TQIQE T F K++ +F TL
Sbjct: 9 KSMLFEYSYQSLLLILIISAPPIILASIVGIMVAIFQAATQIQEQTFAFAIKLVVIFGTL 68
Query: 63 IISAPFIGGQISSFVTLVLSR 83
+IS ++ I F + +
Sbjct: 69 MISGGWLSNMIFRFASQIFQN 89
>gi|15618733|ref|NP_225019.1| Yop proteins translocation protein S [Chlamydophila pneumoniae
CWL029]
gi|15836357|ref|NP_300881.1| YopS translocation protein [Chlamydophila pneumoniae J138]
gi|16752216|ref|NP_445584.1| type III secretion inner membrane protein SctS [Chlamydophila
pneumoniae AR39]
gi|33242184|ref|NP_877125.1| translocation protein S [Chlamydophila pneumoniae TW-183]
gi|4377136|gb|AAD18961.1| Yop proteins translocation protein S [Chlamydophila pneumoniae
CWL029]
gi|6672010|dbj|BAA88642.1| YopS translocation protein [Chlamydophila pneumoniae]
gi|8163544|gb|AAF73726.1| type III secretion inner membrane protein SctS [Chlamydophila
pneumoniae AR39]
gi|8979198|dbj|BAA99032.1| YopS translocation protein [Chlamydophila pneumoniae J138]
gi|33236695|gb|AAP98782.1| translocation protein S [Chlamydophila pneumoniae TW-183]
gi|269302614|gb|ACZ32714.1| putative Yop translocation protein S [Chlamydophila pneumoniae
LPCoLN]
Length = 95
Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%)
Query: 3 EADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITL 62
++ + E + ++ IL SAP + A +GI++A QA TQIQE T F K++ +F TL
Sbjct: 10 KSVLFEYSYQSLLLILIVSAPPIILASIVGIMVAIFQAATQIQEQTFAFAVKLVVIFGTL 69
Query: 63 IISAPFIGGQISSF 76
+IS ++ I F
Sbjct: 70 MISGGWLSNMILRF 83
>gi|212709501|ref|ZP_03317629.1| hypothetical protein PROVALCAL_00543 [Providencia alcalifaciens
DSM 30120]
gi|212687839|gb|EEB47367.1| hypothetical protein PROVALCAL_00543 [Providencia alcalifaciens
DSM 30120]
Length = 89
Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 36/51 (70%)
Query: 34 LIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSRI 84
+I+ LQA TQ+ E+TL+F+PKI++V LII+ P++ ++ ++ + S +
Sbjct: 34 IISLLQAATQVNEMTLSFIPKILSVISVLIIAGPWMLNLLTDYIRTLFSNL 84
>gi|187919909|ref|YP_001888940.1| type III secretion protein, HrpO family [Burkholderia
phytofirmans PsJN]
gi|187718347|gb|ACD19570.1| type III secretion protein, HrpO family [Burkholderia
phytofirmans PsJN]
Length = 91
Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 38/64 (59%)
Query: 21 SAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLV 80
S P L A +G+++ LQ++TQIQ+ L + KII V + +I++ P+ ++S F+
Sbjct: 22 SLPALAVATAIGVVVGLLQSVTQIQDQALPYGAKIIGVGLVMIVAIPWGNSEVSRFLDHA 81
Query: 81 LSRI 84
S I
Sbjct: 82 FSYI 85
>gi|332669210|ref|YP_004452218.1| flagellar biosynthetic protein FliQ [Cellulomonas fimi ATCC 484]
gi|332338248|gb|AEE44831.1| flagellar biosynthetic protein FliQ [Cellulomonas fimi ATCC 484]
Length = 90
Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 35/51 (68%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTF 51
M+ VL++ A+ SAPVL +A+ +G +++ LQ++TQIQEVTL+F
Sbjct: 1 MDTTAVLDVGVDALILAAKLSAPVLVTALVVGFVVSLLQSVTQIQEVTLSF 51
>gi|225569961|ref|ZP_03778986.1| hypothetical protein CLOHYLEM_06056 [Clostridium hylemonae DSM
15053]
gi|225161431|gb|EEG74050.1| hypothetical protein CLOHYLEM_06056 [Clostridium hylemonae DSM
15053]
Length = 87
Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 25/34 (73%)
Query: 21 SAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPK 54
P+L +M +GI+I+ LQA TQI E TLTFVPK
Sbjct: 21 GGPILLISMIVGIVISILQAATQIHEQTLTFVPK 54
>gi|260767695|ref|ZP_05876630.1| flagellar biosynthesis protein FliQ [Vibrio furnissii CIP 102972]
gi|260617204|gb|EEX42388.1| flagellar biosynthesis protein FliQ [Vibrio furnissii CIP 102972]
gi|315179473|gb|ADT86387.1| flagellar biosynthesis protein Q [Vibrio furnissii NCTC 11218]
Length = 89
Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 46/81 (56%)
Query: 8 EIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAP 67
E+ R A+W +L ++ ++ +G+++A QA T I E TL+F+P++I + L++ A
Sbjct: 8 EMFRDALWMVLIMVCAIIVPSLLIGLVVAVFQAATSINEQTLSFLPRLIVTLLALMLFAH 67
Query: 68 FIGGQISSFVTLVLSRIQSSL 88
++ + F ++ R+ L
Sbjct: 68 WMTQMMMEFFFAMIERLPQVL 88
>gi|84785896|gb|ABC62087.1| secretion and cellular translocation protein S [Chlamydophila
psittaci]
Length = 94
Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%)
Query: 6 VLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIIS 65
+ E + ++ IL SAP + A +GI++A QA TQIQE T F K++ +F TL+IS
Sbjct: 12 LFEYSYQSLLLILIISAPPIILASIVGIMVAIFQAATQIQEQTFAFAIKLVVIFGTLMIS 71
Query: 66 APFIGGQISSFVTLVLSR 83
++ I F + +
Sbjct: 72 GGWLSNMIFRFASQIFQN 89
>gi|187918148|ref|YP_001883711.1| flagellar biosynthetic protein FliQ [Borrelia hermsii DAH]
gi|119860996|gb|AAX16791.1| flagellar biosynthetic protein FliQ [Borrelia hermsii DAH]
Length = 87
Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 57/86 (66%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M ++ + R A+ I+ SAP+L A+ +G+L++ QA+T IQ+ TL+F+PKII + +
Sbjct: 1 MTTGQIIYLIRIAVENIIILSAPMLIMALIVGLLVSIFQAVTSIQDQTLSFIPKIIIILL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
TL+I P+I ++ F +V S+IQ+
Sbjct: 61 TLVIFGPWILKKLMQFAFIVFSQIQN 86
>gi|302392378|ref|YP_003828198.1| flagellar biosynthetic protein FliQ [Acetohalobium arabaticum DSM
5501]
gi|302204455|gb|ADL13133.1| flagellar biosynthetic protein FliQ [Acetohalobium arabaticum DSM
5501]
Length = 89
Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 49/77 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M E V+E+ R A+ ++ +AP+L + G+ I+ LQA TQIQE TL F+PKI+AV +
Sbjct: 1 MTEQLVIELGRRALLQVVMVTAPMLGLGLLAGLAISILQATTQIQEQTLVFIPKILAVIV 60
Query: 61 TLIISAPFIGGQISSFV 77
+II P++ + FV
Sbjct: 61 AIIIFGPWMLNTLVDFV 77
>gi|237800000|ref|ZP_04588461.1| type III secretion protein HrcS [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331022855|gb|EGI02912.1| type III secretion protein HrcS [Pseudomonas syringae pv. oryzae
str. 1_6]
Length = 72
Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%)
Query: 21 SAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLV 80
+AP L A+ +G++ + LQAL QIQ+ TL F K+ AV +TL ++ +IG ++ F+ +
Sbjct: 2 TAPPLGVAVLVGVITSLLQALMQIQDQTLPFGIKLAAVGLTLAMTGRWIGVELIQFINMA 61
Query: 81 LSRIQSS 87
I S
Sbjct: 62 FDLIARS 68
>gi|146282915|ref|YP_001173068.1| flagellar biosynthesis protein FliQ [Pseudomonas stutzeri A1501]
gi|145571120|gb|ABP80226.1| flagellar biosynthetic protein FliQ [Pseudomonas stutzeri A1501]
gi|327481255|gb|AEA84565.1| flagellar biosynthesis protein FliQ [Pseudomonas stutzeri DSM
4166]
Length = 89
Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 42/69 (60%)
Query: 8 EIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAP 67
++ R +W ++ ++ +G+++A QA TQI E TL+F+P+++ + +TLI + P
Sbjct: 8 DLFREGLWMTAMIVGVLVVPSLLVGLVVAMFQAATQINEQTLSFLPRLLVMLLTLIWAGP 67
Query: 68 FIGGQISSF 76
++ ++ +
Sbjct: 68 WLVRELMEY 76
>gi|260776472|ref|ZP_05885367.1| flagellar biosynthesis protein FliQ [Vibrio coralliilyticus ATCC
BAA-450]
gi|260607695|gb|EEX33960.1| flagellar biosynthesis protein FliQ [Vibrio coralliilyticus ATCC
BAA-450]
Length = 89
Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 46/81 (56%)
Query: 8 EIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAP 67
E+ R A+W +L ++ ++ +G+++A QA T I E TL+F+P+++ + L++ A
Sbjct: 8 ELFRGALWMVLLMVCAIIIPSLLIGLIVAIFQAATSINEQTLSFLPRLVVTLLALMLFAH 67
Query: 68 FIGGQISSFVTLVLSRIQSSL 88
++ + + ++ R+ L
Sbjct: 68 WMTQMLMEYFFSIVERLPQVL 88
>gi|218778859|ref|YP_002430177.1| flagellar biosynthetic protein FliQ [Desulfatibacillum
alkenivorans AK-01]
gi|218760243|gb|ACL02709.1| Flagellar biosynthetic protein FliQ [Desulfatibacillum
alkenivorans AK-01]
Length = 89
Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 33/49 (67%)
Query: 38 LQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSRIQS 86
QA TQIQE+TLTFVPKI+ V + I P++ ++ +F + +S+I +
Sbjct: 38 FQATTQIQEITLTFVPKIVVVLLGAIFFGPWMLEKLMAFTHMCISQIPN 86
>gi|220934505|ref|YP_002513404.1| flagellar biosynthetic protein FliQ [Thioalkalivibrio sp.
HL-EbGR7]
gi|219995815|gb|ACL72417.1| flagellar biosynthetic protein FliQ [Thioalkalivibrio sp.
HL-EbGR7]
Length = 89
Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 48/69 (69%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+++ + A+ I+ SAP+L +A+ +G+ I +QA TQIQE+TL+F+PK++ +F
Sbjct: 1 MTPETVVDLGQQALMVIVLLSAPMLLAALAIGLAIGMIQAATQIQEMTLSFIPKLLGMFA 60
Query: 61 TLIISAPFI 69
L+I+ ++
Sbjct: 61 ALLITGHWM 69
>gi|124265769|ref|YP_001019773.1| flagellar biosynthesis protein [Methylibium petroleiphilum PM1]
gi|124258544|gb|ABM93538.1| flagellar biosynthesis protein [Methylibium petroleiphilum PM1]
Length = 89
Score = 42.7 bits (99), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ V + + +L SAP+L + + +G+LI+ QA TQI E TL+FVPK+IA
Sbjct: 1 MDAQQVFTFGQQGLVLLLMVSAPMLLTILVVGLLISVFQAATQINESTLSFVPKLIAAVA 60
Query: 61 TLIISAPFI 69
L I+ P++
Sbjct: 61 VLAIAGPWM 69
>gi|322432984|ref|YP_004210233.1| export protein FliQ family 3 [Acidobacterium sp. MP5ACTX9]
gi|321165211|gb|ADW70915.1| export protein FliQ family 3 [Acidobacterium sp. MP5ACTX9]
Length = 89
Score = 42.4 bits (98), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 49/88 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + R + ++ +AP+L A+ + +++ +Q LT +Q+ TL+ VP+++A
Sbjct: 1 MGADAVVAMGRMMLEEVIILTAPILLVAIAVSLVVNIIQVLTSLQDQTLSTVPRLLATGA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
TL I P++ IS++ L+ S L
Sbjct: 61 TLFILMPWMWRHISTYTLLLFSDFHKVL 88
>gi|311105949|ref|YP_003978802.1| flagellar biosynthetic protein FliQ [Achromobacter xylosoxidans
A8]
gi|310760638|gb|ADP16087.1| flagellar biosynthetic protein FliQ [Achromobacter xylosoxidans
A8]
Length = 89
Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 52/84 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + AM +L+ + P+L + +G++I+ QA TQI E+TL+F+PK++A+
Sbjct: 1 MTAETVMTMTYQAMKIVLAMAGPLLLVTLVVGLVISIFQAATQINEMTLSFIPKLLAMCG 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
L++ P++ G + ++ ++ +I
Sbjct: 61 VLVLLGPWLIGVMVDYIRQLIGQI 84
>gi|206895800|ref|YP_002246701.1| flagellar biosynthetic protein FliQ [Coprothermobacter
proteolyticus DSM 5265]
gi|206738417|gb|ACI17495.1| flagellar biosynthetic protein FliQ [Coprothermobacter
proteolyticus DSM 5265]
Length = 87
Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 4/63 (6%)
Query: 11 RAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIG 70
R+++ IL PVL A+ LGI+I+ LQ LTQI + ++ FVPK F+ +++ F G
Sbjct: 10 RSSVLQILIIVGPVLLVALVLGIIISILQVLTQIHDPSVAFVPK----FLVIMLLVLFFG 65
Query: 71 GQI 73
G +
Sbjct: 66 GTV 68
>gi|225159017|ref|ZP_03725327.1| export protein FliQ family 3 [Opitutaceae bacterium TAV2]
gi|224802396|gb|EEG20658.1| export protein FliQ family 3 [Opitutaceae bacterium TAV2]
Length = 89
Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 37/55 (67%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSRIQS 86
G+L + Q++T IQE TLTF PK++A+ + I+ AP++ +S F + ++R+ +
Sbjct: 32 GLLTSLAQSVTSIQEQTLTFAPKLVALGLLFILLAPWLLRTLSEFAAMCIARMAT 86
>gi|319795613|ref|YP_004157253.1| type III secretion protein, hrpo family [Variovorax paradoxus
EPS]
gi|315598076|gb|ADU39142.1| type III secretion protein, HrpO family [Variovorax paradoxus
EPS]
Length = 88
Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 45/76 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M ++L+I R + +L S PV+ A +++A LQA+TQ+Q+ + ++IAV +
Sbjct: 1 MTPQNILDITREGLLLVLWISLPVVAVATLTSLVVAVLQAVTQVQDQNIGQSIRMIAVMV 60
Query: 61 TLIISAPFIGGQISSF 76
+I++A ++G + F
Sbjct: 61 AIIVTAGWLGRDMIRF 76
>gi|76574806|gb|ABA47280.1| HrcS [Pseudomonas cichorii]
gi|182440972|dbj|BAG24097.1| HrcS [Pseudomonas cichorii]
gi|284810344|gb|ADB95954.1| putative HrcS [Pseudomonas cichorii]
gi|284810348|gb|ADB95957.1| putative HrcS [Pseudomonas cichorii]
gi|284810352|gb|ADB95960.1| putative HrcS [Pseudomonas cichorii]
gi|284810356|gb|ADB95963.1| putative HrcS [Pseudomonas cichorii]
gi|284810360|gb|ADB95966.1| putative HrcS [Pseudomonas cichorii]
gi|284810364|gb|ADB95969.1| putative HrcS [Pseudomonas cichorii]
gi|284810368|gb|ADB95972.1| putative HrcS [Pseudomonas cichorii]
gi|284810372|gb|ADB95975.1| putative HrcS [Pseudomonas cichorii]
gi|284810376|gb|ADB95978.1| putative HrcS [Pseudomonas cichorii]
gi|284810380|gb|ADB95981.1| putative HrcS [Pseudomonas cichorii]
gi|284810384|gb|ADB95984.1| putative HrcS [Pseudomonas cichorii]
gi|284810388|gb|ADB95987.1| putative HrcS [Pseudomonas cichorii]
gi|284810392|gb|ADB95990.1| putative HrcS [Pseudomonas cichorii]
gi|284810396|gb|ADB95993.1| putative HrcS [Pseudomonas cichorii]
gi|284810400|gb|ADB95996.1| putative HrcS [Pseudomonas cichorii]
gi|284810404|gb|ADB95999.1| putative HrcS [Pseudomonas cichorii]
gi|284810408|gb|ADB96002.1| putative HrcS [Pseudomonas cichorii]
gi|284810412|gb|ADB96005.1| putative HrcS [Pseudomonas cichorii]
gi|284810416|gb|ADB96008.1| putative HrcS [Pseudomonas cichorii]
Length = 86
Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 42/66 (63%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
+ L + + AM ++ SAP L A+ +G++ + LQA+ Q+Q+ TL F K++AV + L +
Sbjct: 2 ETLTLFKQAMLLVVVLSAPALIVAVIVGVITSLLQAVMQLQDQTLPFAIKLVAVGVALAL 61
Query: 65 SAPFIG 70
+ +IG
Sbjct: 62 TGRWIG 67
>gi|57238686|ref|YP_179817.1| flagellar biosynthesis protein FliQ [Campylobacter jejuni RM1221]
gi|86149340|ref|ZP_01067571.1| flagellar biosynthetic protein FliQ [Campylobacter jejuni subsp.
jejuni CF93-6]
gi|86152319|ref|ZP_01070530.1| flagellar biosynthetic protein FliQ [Campylobacter jejuni subsp.
jejuni 260.94]
gi|86152894|ref|ZP_01071099.1| flagellar biosynthetic protein FliQ [Campylobacter jejuni subsp.
jejuni HB93-13]
gi|88596569|ref|ZP_01099806.1| flagellar biosynthetic protein FliQ [Campylobacter jejuni subsp.
jejuni 84-25]
gi|121612222|ref|YP_001001318.1| flagellar biosynthesis protein FliQ [Campylobacter jejuni subsp.
jejuni 81-176]
gi|148925811|ref|ZP_01809499.1| flagellar biosynthetic protein [Campylobacter jejuni subsp.
jejuni CG8486]
gi|157415894|ref|YP_001483150.1| flagellar biosynthesis protein FliQ [Campylobacter jejuni subsp.
jejuni 81116]
gi|167006211|ref|ZP_02271969.1| flagellar biosynthetic protein [Campylobacter jejuni subsp.
jejuni 81-176]
gi|205355693|ref|ZP_03222463.1| flagellar biosynthetic protein [Campylobacter jejuni subsp.
jejuni CG8421]
gi|218563263|ref|YP_002345043.1| flagellar biosynthesis protein FliQ [Campylobacter jejuni subsp.
jejuni NCTC 11168]
gi|283957060|ref|ZP_06374532.1| flagellar biosynthetic protein [Campylobacter jejuni subsp.
jejuni 1336]
gi|57167490|gb|AAW36269.1| flagellar biosynthetic protein FliQ [Campylobacter jejuni RM1221]
gi|62754294|gb|AAX99157.1| FliQ [Campylobacter jejuni subsp. jejuni 81-176]
gi|85840122|gb|EAQ57380.1| flagellar biosynthetic protein FliQ [Campylobacter jejuni subsp.
jejuni CF93-6]
gi|85840808|gb|EAQ58059.1| flagellar biosynthetic protein FliQ [Campylobacter jejuni subsp.
jejuni 260.94]
gi|85843779|gb|EAQ60989.1| flagellar biosynthetic protein FliQ [Campylobacter jejuni subsp.
jejuni HB93-13]
gi|87249847|gb|EAQ72806.1| flagellar biosynthetic protein FliQ [Campylobacter jejuni subsp.
jejuni 81-176]
gi|88191410|gb|EAQ95382.1| flagellar biosynthetic protein FliQ [Campylobacter jejuni subsp.
jejuni 84-25]
gi|112360970|emb|CAL35771.1| flagellar biosynthetic protein [Campylobacter jejuni subsp.
jejuni NCTC 11168]
gi|145845821|gb|EDK22912.1| flagellar biosynthetic protein [Campylobacter jejuni subsp.
jejuni CG8486]
gi|157386858|gb|ABV53173.1| flagellar biosynthetic protein [Campylobacter jejuni subsp.
jejuni 81116]
gi|205346470|gb|EDZ33103.1| flagellar biosynthetic protein [Campylobacter jejuni subsp.
jejuni CG8421]
gi|283791561|gb|EFC30358.1| flagellar biosynthetic protein [Campylobacter jejuni subsp.
jejuni 1336]
gi|284926868|gb|ADC29220.1| flagellar biosynthetic protein [Campylobacter jejuni subsp.
jejuni IA3902]
gi|307748531|gb|ADN91801.1| Flagellar biosynthetic protein FliQ [Campylobacter jejuni subsp.
jejuni M1]
gi|315059125|gb|ADT73454.1| Flagellar biosynthesis protein fliQ [Campylobacter jejuni subsp.
jejuni S3]
gi|315927575|gb|EFV06906.1| flagellar biosynthetic protein FliQ [Campylobacter jejuni subsp.
jejuni DFVF1099]
gi|315930885|gb|EFV09871.1| flagellar biosynthetic protein FliQ [Campylobacter jejuni subsp.
jejuni 305]
gi|315931361|gb|EFV10330.1| flagellar biosynthetic protein FliQ [Campylobacter jejuni subsp.
jejuni 327]
Length = 89
Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 36/55 (65%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSRIQS 86
G++I+ QA TQI E+TL+FVPKII V + LI P++ + F +L++I +
Sbjct: 32 GLVISIFQATTQINEMTLSFVPKIILVVVILIFLMPWMTTTMIDFTENILNQIPT 86
>gi|217422567|ref|ZP_03454070.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 576]
gi|217394798|gb|EEC34817.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 576]
Length = 87
Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 46/82 (56%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M D++ + M L S PV+ A G+ I+FLQA+T +QE ++++ K++AV +
Sbjct: 1 MEIDDLIRLTSQGMMLCLYISLPVVLVAAASGLAISFLQAITSLQEQSISYGVKLVAVTV 60
Query: 61 TLIISAPFIGGQISSFVTLVLS 82
+ I+ P+ +I F ++S
Sbjct: 61 IVAIAGPWAAAEILHFAQQLMS 82
>gi|307725661|ref|YP_003908874.1| type III secretion protein, HrpO family [Burkholderia sp.
CCGE1003]
gi|323530326|ref|YP_004232478.1| type III secretion protein, HrpO family [Burkholderia sp.
CCGE1001]
gi|307586186|gb|ADN59583.1| type III secretion protein, HrpO family [Burkholderia sp.
CCGE1003]
gi|323387328|gb|ADX59418.1| type III secretion protein, HrpO family [Burkholderia sp.
CCGE1001]
Length = 87
Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 35/48 (72%)
Query: 21 SAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPF 68
S P++ A +G+ ++FLQA+T +Q+ TL+ K+IAV I ++I+APF
Sbjct: 21 SLPIVIVAALVGLGVSFLQAITSMQDQTLSHGVKLIAVTIAIVIAAPF 68
>gi|120613020|ref|YP_972698.1| flagellar biosynthetic protein FliQ [Acidovorax citrulli AAC00-1]
gi|120591484|gb|ABM34924.1| flagellar biosynthetic protein FliQ [Acidovorax citrulli AAC00-1]
Length = 89
Score = 42.0 bits (97), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M VL + R A+ +L S PVL M +G+L++ QA+TQI E TL FVPK+IA +
Sbjct: 1 MTSQMVLTVGRDALTLLLMVSMPVLGVVMVVGLLVSIFQAVTQIHEATLAFVPKLIAAMV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
+ P++ I+S V + I+S
Sbjct: 61 VFAVVGPWM---ITSLVDYIRRTIES 83
>gi|312884900|ref|ZP_07744590.1| flagellar biosynthesis protein FliQ [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309367377|gb|EFP94939.1| flagellar biosynthesis protein FliQ [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 89
Score = 42.0 bits (97), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 46/81 (56%)
Query: 8 EIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAP 67
E+ R A+W +L ++ ++ +G+++A QA T I E TL+F+P++I + L++ A
Sbjct: 8 ELFREALWVVLIMVCAIIIPSLLIGLIVAIFQAATSINEQTLSFLPRLIVTLLALMMFAH 67
Query: 68 FIGGQISSFVTLVLSRIQSSL 88
++ + F ++ R+ L
Sbjct: 68 WMTQILMEFFFSMIERLPQVL 88
>gi|15835466|ref|NP_297225.1| type III secretion inner membrane protein SctS [Chlamydia
muridarum Nigg]
gi|270285646|ref|ZP_06195040.1| type III secretion inner membrane protein SctS [Chlamydia
muridarum Nigg]
gi|270289655|ref|ZP_06195957.1| type III secretion inner membrane protein SctS [Chlamydia
muridarum Weiss]
gi|301337042|ref|ZP_07225244.1| type III secretion inner membrane protein SctS [Chlamydia
muridarum MopnTet14]
gi|8163335|gb|AAF73611.1| type III secretion inner membrane protein SctS [Chlamydia
muridarum Nigg]
Length = 94
Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%)
Query: 3 EADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITL 62
++ + E + A+ IL SAP + A +GI++A QA TQIQE T F K++ +F TL
Sbjct: 9 KSMLFEYSYEALLLILIISAPPIILASIVGIMVAIFQAATQIQEQTFAFAIKLVVIFGTL 68
Query: 63 IISAPFIGGQISSF 76
+I+ ++ I F
Sbjct: 69 MITGGWLCSMILRF 82
>gi|222823196|ref|YP_002574769.1| flagellar biosynthesis protein FliQ [Campylobacter lari RM2100]
gi|222538417|gb|ACM63518.1| flagellar biosynthesis protein FliQ [Campylobacter lari RM2100]
Length = 88
Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 43/66 (65%)
Query: 21 SAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLV 80
S P+L + + G++I+ QA+TQI E TL+FVPKI+ V + ++ P++ + F T +
Sbjct: 20 SLPMLLAGLIAGLIISIFQAVTQINEATLSFVPKILLVVVVIVFLMPWMISSMIDFTTNI 79
Query: 81 LSRIQS 86
L++I S
Sbjct: 80 LNQIPS 85
>gi|326794361|ref|YP_004312181.1| type III secretion protein, HrpO family [Marinomonas mediterranea
MMB-1]
gi|326545125|gb|ADZ90345.1| type III secretion protein, HrpO family [Marinomonas mediterranea
MMB-1]
Length = 86
Score = 42.0 bits (97), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
D L + + M ++ SAP L A+ +G++++ LQAL Q+Q+ TL F K++AV +TL I
Sbjct: 2 DTLTLFKQGMVLVVMLSAPPLVVAVIVGVVVSLLQALLQVQDQTLPFTIKLVAVVVTLAI 61
Query: 65 SAPFIGGQISSFVT 78
+ ++G +I F T
Sbjct: 62 TGRWLGVEIIQFTT 75
>gi|167567943|ref|ZP_02360859.1| type III secretion-associated protein [Burkholderia oklahomensis
EO147]
gi|167573183|ref|ZP_02366057.1| type III secretion-associated protein [Burkholderia oklahomensis
C6786]
Length = 87
Score = 42.0 bits (97), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ ++ + M L+ S P + A +G+ ++F+QA+T +Q+ TL V K+IAV I
Sbjct: 1 MDIDSLIRFSTQGMLLCLTVSLPPVIVAALVGLGVSFVQAITSLQDQTLPQVAKLIAVTI 60
Query: 61 TLIISAP 67
T+I++AP
Sbjct: 61 TIIVAAP 67
>gi|257095349|ref|YP_003168990.1| flagellar biosynthetic protein FliQ [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257047873|gb|ACV37061.1| flagellar biosynthetic protein FliQ [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 89
Score = 42.0 bits (97), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 47/69 (68%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V++I R A+ L SAP+L +A+ +G++++ QA TQI E TL FVPK++ +F+
Sbjct: 1 MTPELVMDIGRQAVEMTLLLSAPLLLAALVIGLIVSVFQAATQINEQTLAFVPKLVGMFL 60
Query: 61 TLIISAPFI 69
L+++ P++
Sbjct: 61 ILLLAGPWM 69
>gi|302185357|ref|ZP_07262030.1| HrpO family type III secretion protein [Pseudomonas syringae pv.
syringae 642]
gi|256259403|gb|ACU65040.1| HrcS [Pseudomonas syringae pv. syringae]
Length = 87
Score = 42.0 bits (97), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 48/83 (57%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
+ L + + M ++ +AP L A+ +G+L + +QAL Q+Q+ TL F K++AV +TL +
Sbjct: 2 EALNLFKQGMILVVLLTAPPLIVAVAVGVLTSLVQALMQVQDQTLPFGLKLLAVGLTLAM 61
Query: 65 SAPFIGGQISSFVTLVLSRIQSS 87
+ +IG ++ L + I S
Sbjct: 62 TGRWIGVELIQLTNLAFNMIAQS 84
>gi|116694513|ref|YP_728724.1| flagellar biosynthesis protein FliQ [Ralstonia eutropha H16]
gi|113529012|emb|CAJ95359.1| flagellar biosynthesis protein [Ralstonia eutropha H16]
Length = 89
Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 35/51 (68%), Gaps = 3/51 (5%)
Query: 36 AFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSRIQS 86
+ QA TQI E+TL+F+PK+IA+F T++++ P++ I+S V + QS
Sbjct: 36 SLFQAATQINEMTLSFIPKLIALFATMVLAGPWM---INSMVDYMREVFQS 83
>gi|83720940|ref|YP_440591.1| flagellar biosynthesis protein FliQ [Burkholderia thailandensis
E264]
gi|167579278|ref|ZP_02372152.1| flagellar biosynthesis protein FliQ [Burkholderia thailandensis
TXDOH]
gi|167617384|ref|ZP_02386015.1| flagellar biosynthesis protein FliQ [Burkholderia thailandensis
Bt4]
gi|83654765|gb|ABC38828.1| flagellar biosynthetic protein FliQ [Burkholderia thailandensis
E264]
Length = 90
Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 56/86 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +V+ +A AM+ L +AP+L A+ +G++++ QA TQI E TL+F+PK++AV
Sbjct: 1 MTPENVMTLAHQAMYIGLLLAAPLLLVALAVGLVVSLFQAATQINEATLSFIPKLLAVAA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
T++I+ P++ + ++ +L R+ +
Sbjct: 61 TMVIAGPWMLSTMLDYLREILLRVAT 86
>gi|90021816|ref|YP_527643.1| flagellar hook-associated protein [Saccharophagus degradans 2-40]
gi|89951416|gb|ABD81431.1| flagellar biosynthetic protein FliQ [Saccharophagus degradans
2-40]
Length = 89
Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 39/57 (68%)
Query: 28 AMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSRI 84
++ +G++++ QA TQI E TL+F+P+++ T++++ P++ G IS T ++ RI
Sbjct: 28 SLLVGLVVSTFQAATQINEQTLSFLPRLMMTIATIMVTGPWLLGSISDLFTSLVMRI 84
>gi|76818013|ref|YP_335590.1| type III secretion inner membrane protein SctS [Burkholderia
pseudomallei 1710b]
gi|126443963|ref|YP_001062996.1| HrpO family type III secretion protein [Burkholderia pseudomallei
668]
gi|126455867|ref|YP_001075943.1| HrpO family type III secretion protein [Burkholderia pseudomallei
1106a]
gi|134282456|ref|ZP_01769160.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 305]
gi|167742992|ref|ZP_02415766.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 14]
gi|167828538|ref|ZP_02460009.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 9]
gi|167849996|ref|ZP_02475504.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei B7210]
gi|167898605|ref|ZP_02486006.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 7894]
gi|167906947|ref|ZP_02494152.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei NCTC 13177]
gi|167915306|ref|ZP_02502397.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 112]
gi|167923139|ref|ZP_02510230.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei BCC215]
gi|217425305|ref|ZP_03456799.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 576]
gi|226199049|ref|ZP_03794611.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei Pakistan 9]
gi|237507517|ref|ZP_04520232.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei MSHR346]
gi|242311426|ref|ZP_04810443.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 1106b]
gi|254183806|ref|ZP_04890398.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 1655]
gi|254186720|ref|ZP_04893236.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei Pasteur 52237]
gi|254193606|ref|ZP_04900038.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei S13]
gi|254263098|ref|ZP_04953963.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 1710a]
gi|254301599|ref|ZP_04969043.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 406e]
gi|4206079|gb|AAD11412.1| SctS [Burkholderia pseudomallei]
gi|48479066|gb|AAT44856.1| putative type III secretory pathway and flagellar biosynthesis
protein [Burkholderia pseudomallei]
gi|76582486|gb|ABA51960.1| type III secretion inner membrane protein SctS [Burkholderia
pseudomallei 1710b]
gi|126223454|gb|ABN86959.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 668]
gi|126229635|gb|ABN93048.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 1106a]
gi|134246013|gb|EBA46103.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 305]
gi|157811488|gb|EDO88658.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 406e]
gi|157934404|gb|EDO90074.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei Pasteur 52237]
gi|169650357|gb|EDS83050.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei S13]
gi|184214339|gb|EDU11382.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 1655]
gi|217391556|gb|EEC31584.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 576]
gi|225928824|gb|EEH24849.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei Pakistan 9]
gi|234999722|gb|EEP49146.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei MSHR346]
gi|242134665|gb|EES21068.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 1106b]
gi|254214100|gb|EET03485.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 1710a]
Length = 87
Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 38/55 (69%)
Query: 13 AMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAP 67
AM LS S P + A +G+ ++F+QA+T +Q+ TL V K+IAV IT++++AP
Sbjct: 13 AMLLCLSVSLPPVIVAALVGLGVSFVQAITSLQDQTLPQVLKLIAVTITIMVAAP 67
>gi|283836564|ref|ZP_06356305.1| surface presentation of antigens protein SpaQ [Citrobacter
youngae ATCC 29220]
gi|291067493|gb|EFE05602.1| surface presentation of antigens protein SpaQ [Citrobacter
youngae ATCC 29220]
Length = 86
Score = 42.0 bits (97), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 52/84 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+++ + +W ++ S P + +A +G+LI+ +QA+TQIQ+ T+ F+ K++ V +
Sbjct: 1 MSDSVIAHFGEELLWIVVMLSLPTVVAASVVGVLISLIQAVTQIQDQTVQFLIKLVVVSV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
L+++ ++G + S+ L+ +I
Sbjct: 61 VLVMTYNWMGNVLLSYTHLIFQQI 84
>gi|52842015|ref|YP_095814.1| flagellar biosynthetic protein FliQ [Legionella pneumophila
subsp. pneumophila str. Philadelphia 1]
gi|148359332|ref|YP_001250539.1| flagellar biosynthetic protein FliQ [Legionella pneumophila str.
Corby]
gi|296107379|ref|YP_003619079.1| flagellar biosynthetic protein FliQ [Legionella pneumophila
2300/99 Alcoy]
gi|52629126|gb|AAU27867.1| flagellar biosynthetic protein FliQ [Legionella pneumophila
subsp. pneumophila str. Philadelphia 1]
gi|148281105|gb|ABQ55193.1| flagellar biosynthetic protein FliQ [Legionella pneumophila str.
Corby]
gi|295649280|gb|ADG25127.1| flagellar biosynthetic protein FliQ [Legionella pneumophila
2300/99 Alcoy]
gi|307610488|emb|CBX00060.1| flagellar biosynthetic protein FliQ [Legionella pneumophila 130b]
Length = 89
Score = 42.0 bits (97), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 37/57 (64%)
Query: 28 AMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSRI 84
+ +G++I+ QA TQI E +L+F+PK+ F+ LI++ P++ + ++ ++S I
Sbjct: 28 GLIVGLIISMFQAATQINETSLSFIPKLFVTFLVLILAGPWLLKTLINYTDTLISNI 84
>gi|54294675|ref|YP_127090.1| flagellar biosynthetic protein FliQ [Legionella pneumophila str.
Lens]
gi|54297701|ref|YP_124070.1| flagellar biosynthetic protein FliQ [Legionella pneumophila str.
Paris]
gi|53751486|emb|CAH12904.1| Flagellar biosynthetic protein FliQ [Legionella pneumophila str.
Paris]
gi|53754507|emb|CAH15991.1| Flagellar biosynthetic protein FliQ [Legionella pneumophila str.
Lens]
Length = 89
Score = 42.0 bits (97), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 37/57 (64%)
Query: 28 AMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSRI 84
+ +G++I+ QA TQI E +L+F+PK+ F+ LI++ P++ + ++ ++S I
Sbjct: 28 GLIVGLIISMFQAATQINETSLSFIPKLFVTFLVLILAGPWLLKTLINYTDTLISNI 84
>gi|206603141|gb|EDZ39621.1| flagellar biosynthesis protein FliQ [Leptospirillum sp. Group II
'5-way CG']
Length = 112
Score = 42.0 bits (97), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 45/76 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN +++ A+ L + PVL ++ +G+L++ QA+TQI E TL+F+PK+ V
Sbjct: 24 MNVQTAIDLTHNALVMALILTLPVLVVSLVIGVLVSLFQAVTQINETTLSFLPKVAGVVG 83
Query: 61 TLIISAPFIGGQISSF 76
L++ P++ Q+ +
Sbjct: 84 VLLVLMPWMVRQLIDY 99
>gi|300906600|ref|ZP_07124291.1| surface presentation of antigens protein SpaQ [Escherichia coli
MS 84-1]
gi|71388158|gb|AAZ31292.1| EpaQ [Escherichia coli]
gi|300401639|gb|EFJ85177.1| surface presentation of antigens protein SpaQ [Escherichia coli
MS 84-1]
gi|315256733|gb|EFU36701.1| surface presentation of antigens protein SpaQ [Escherichia coli
MS 85-1]
Length = 86
Score = 42.0 bits (97), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
D++ A++ IL SA + A F+G+L+ Q +TQ+QE TL F K++ V I +
Sbjct: 3 DIVFAGNRALYLILVMSAGPIAVATFVGLLVGLFQTVTQLQEQTLPFGVKLLCVSICFFL 62
Query: 65 SAPFIGGQISSF 76
+ + G ++ SF
Sbjct: 63 MSGWYGEKLYSF 74
>gi|255348944|ref|ZP_05380951.1| type III secretion system, membrane protein [Chlamydia
trachomatis 70]
gi|255503483|ref|ZP_05381873.1| type III secretion system, membrane protein [Chlamydia
trachomatis 70s]
Length = 94
Score = 42.0 bits (97), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%)
Query: 6 VLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIIS 65
+ E + A+ IL SAP + A +GI++A QA TQIQE T F K++ +F TL+I+
Sbjct: 12 LFEYSYEALLLILIISAPPIILASVVGIMVAIFQAATQIQEQTFAFAIKLVVIFGTLMIT 71
Query: 66 APFIGGQISSF 76
++ I F
Sbjct: 72 GGWLCSMILRF 82
>gi|15803388|ref|NP_289421.1| type III secretion apparatus protein [Escherichia coli O157:H7
EDL933]
gi|15832978|ref|NP_311751.1| EpaQ [Escherichia coli O157:H7 str. Sakai]
gi|157158179|ref|YP_001464196.1| type III secretion apparatus protein EpaQ [Escherichia coli
E24377A]
gi|157162319|ref|YP_001459637.1| type III secretion apparatus protein EpaQ [Escherichia coli HS]
gi|168747670|ref|ZP_02772692.1| type III secretion apparatus protein EpaQ [Escherichia coli
O157:H7 str. EC4113]
gi|168753790|ref|ZP_02778797.1| type III secretion apparatus protein EpaQ [Escherichia coli
O157:H7 str. EC4401]
gi|168759980|ref|ZP_02784987.1| type III secretion apparatus protein EpaQ [Escherichia coli
O157:H7 str. EC4501]
gi|168766845|ref|ZP_02791852.1| type III secretion apparatus protein EpaQ [Escherichia coli
O157:H7 str. EC4486]
gi|168775729|ref|ZP_02800736.1| type III secretion apparatus protein EpaQ [Escherichia coli
O157:H7 str. EC4196]
gi|168778866|ref|ZP_02803873.1| type III secretion apparatus protein EpaQ [Escherichia coli
O157:H7 str. EC4076]
gi|168785698|ref|ZP_02810705.1| type III secretion apparatus protein EpaQ [Escherichia coli
O157:H7 str. EC869]
gi|168799985|ref|ZP_02824992.1| type III secretion apparatus protein EpaQ [Escherichia coli
O157:H7 str. EC508]
gi|170018892|ref|YP_001723846.1| HrpO family type III secretion protein [Escherichia coli ATCC
8739]
gi|191166013|ref|ZP_03027849.1| type III secretion apparatus protein EpaQ [Escherichia coli B7A]
gi|193071823|ref|ZP_03052712.1| type III secretion apparatus protein EpaQ [Escherichia coli
E110019]
gi|195936470|ref|ZP_03081852.1| HrpO family type III secretion protein [Escherichia coli O157:H7
str. EC4024]
gi|208808401|ref|ZP_03250738.1| type III secretion apparatus protein EpaQ [Escherichia coli
O157:H7 str. EC4206]
gi|208814108|ref|ZP_03255437.1| type III secretion apparatus protein EpaQ [Escherichia coli
O157:H7 str. EC4045]
gi|208820917|ref|ZP_03261237.1| type III secretion apparatus protein EpaQ [Escherichia coli
O157:H7 str. EC4042]
gi|209399840|ref|YP_002272330.1| type III secretion apparatus protein EpaQ [Escherichia coli
O157:H7 str. EC4115]
gi|217326771|ref|ZP_03442854.1| type III secretion apparatus protein EpaQ [Escherichia coli
O157:H7 str. TW14588]
gi|254794805|ref|YP_003079642.1| type III secretion apparatus protein [Escherichia coli O157:H7
str. TW14359]
gi|256019340|ref|ZP_05433205.1| type III secretion apparatus protein [Shigella sp. D9]
gi|260856976|ref|YP_003230867.1| type III secretion protein EpaQ [Escherichia coli O26:H11 str.
11368]
gi|260869539|ref|YP_003235941.1| type III secretion protein EpaQ [Escherichia coli O111:H- str.
11128]
gi|261226165|ref|ZP_05940446.1| type III secretion apparatus protein [Escherichia coli O157:H7
str. FRIK2000]
gi|261256581|ref|ZP_05949114.1| type III secretion protein EpaQ [Escherichia coli O157:H7 str.
FRIK966]
gi|293406353|ref|ZP_06650279.1| antigen surface presentation protein SpaQ [Escherichia coli
FVEC1412]
gi|293412211|ref|ZP_06654934.1| hypothetical protein ECEG_02216 [Escherichia coli B354]
gi|293416107|ref|ZP_06658747.1| type III secretion protein SctS [Escherichia coli B185]
gi|293449184|ref|ZP_06663605.1| type III secretion protein SctS [Escherichia coli B088]
gi|298382088|ref|ZP_06991685.1| type III secretion protein SctS [Escherichia coli FVEC1302]
gi|300820660|ref|ZP_07100811.1| surface presentation of antigens protein SpaQ [Escherichia coli
MS 119-7]
gi|300898068|ref|ZP_07116436.1| surface presentation of antigens protein SpaQ [Escherichia coli
MS 198-1]
gi|300936203|ref|ZP_07151139.1| surface presentation of antigens protein SpaQ [Escherichia coli
MS 21-1]
gi|300950613|ref|ZP_07164515.1| surface presentation of antigens protein SpaQ [Escherichia coli
MS 116-1]
gi|300958194|ref|ZP_07170348.1| surface presentation of antigens protein SpaQ [Escherichia coli
MS 175-1]
gi|301026124|ref|ZP_07189598.1| surface presentation of antigens protein SpaQ [Escherichia coli
MS 196-1]
gi|301027457|ref|ZP_07190794.1| surface presentation of antigens protein SpaQ [Escherichia coli
MS 69-1]
gi|301643800|ref|ZP_07243837.1| surface presentation of antigens protein SpaQ [Escherichia coli
MS 146-1]
gi|307139549|ref|ZP_07498905.1| type III secretion protein, HrpO family [Escherichia coli H736]
gi|309793921|ref|ZP_07688346.1| surface presentation of antigens protein SpaQ [Escherichia coli
MS 145-7]
gi|331643549|ref|ZP_08344680.1| surface presentation of antigens protein SpaQ [Escherichia coli
H736]
gi|331664425|ref|ZP_08365331.1| surface presentation of antigens protein SpaQ [Escherichia coli
TA143]
gi|331669596|ref|ZP_08370442.1| surface presentation of antigens protein SpaQ [Escherichia coli
TA271]
gi|331674341|ref|ZP_08375101.1| surface presentation of antigens protein SpaQ [Escherichia coli
TA280]
gi|331678846|ref|ZP_08379520.1| surface presentation of antigens protein SpaQ [Escherichia coli
H591]
gi|332280454|ref|ZP_08392867.1| type III secretion apparatus protein EpaQ [Shigella sp. D9]
gi|12517366|gb|AAG57980.1|AE005515_2 type III secretion apparatus protein [Escherichia coli O157:H7
str. EDL933]
gi|13363196|dbj|BAB37147.1| type III secretion protein EpaQ [Escherichia coli O157:H7 str.
Sakai]
gi|62085062|gb|AAX62927.1| type III secretion apparatus protein [Escherichia coli]
gi|62085078|gb|AAX62942.1| type III secretion apparatus protein [Escherichia coli]
gi|62085086|gb|AAX62949.1| type III secretion apparatus protein [Escherichia coli]
gi|157067999|gb|ABV07254.1| type III secretion apparatus protein EpaQ [Escherichia coli HS]
gi|157080209|gb|ABV19917.1| type III secretion apparatus protein EpaQ [Escherichia coli
E24377A]
gi|169753820|gb|ACA76519.1| type III secretion protein, HrpO family [Escherichia coli ATCC
8739]
gi|186976182|gb|ACD01064.1| EpaQ [Escherichia coli O157:H7 str. EC10]
gi|187768730|gb|EDU32574.1| type III secretion apparatus protein EpaQ [Escherichia coli
O157:H7 str. EC4196]
gi|188017805|gb|EDU55927.1| type III secretion apparatus protein EpaQ [Escherichia coli
O157:H7 str. EC4113]
gi|189003282|gb|EDU72268.1| type III secretion apparatus protein EpaQ [Escherichia coli
O157:H7 str. EC4076]
gi|189358380|gb|EDU76799.1| type III secretion apparatus protein EpaQ [Escherichia coli
O157:H7 str. EC4401]
gi|189363741|gb|EDU82160.1| type III secretion apparatus protein EpaQ [Escherichia coli
O157:H7 str. EC4486]
gi|189369218|gb|EDU87634.1| type III secretion apparatus protein EpaQ [Escherichia coli
O157:H7 str. EC4501]
gi|189373883|gb|EDU92299.1| type III secretion apparatus protein EpaQ [Escherichia coli
O157:H7 str. EC869]
gi|189377618|gb|EDU96034.1| type III secretion apparatus protein EpaQ [Escherichia coli
O157:H7 str. EC508]
gi|190903961|gb|EDV63674.1| type III secretion apparatus protein EpaQ [Escherichia coli B7A]
gi|192954863|gb|EDV85377.1| type III secretion apparatus protein EpaQ [Escherichia coli
E110019]
gi|208728202|gb|EDZ77803.1| type III secretion apparatus protein EpaQ [Escherichia coli
O157:H7 str. EC4206]
gi|208735385|gb|EDZ84072.1| type III secretion apparatus protein EpaQ [Escherichia coli
O157:H7 str. EC4045]
gi|208741040|gb|EDZ88722.1| type III secretion apparatus protein EpaQ [Escherichia coli
O157:H7 str. EC4042]
gi|209161240|gb|ACI38673.1| type III secretion apparatus protein EpaQ [Escherichia coli
O157:H7 str. EC4115]
gi|217319138|gb|EEC27563.1| type III secretion apparatus protein EpaQ [Escherichia coli
O157:H7 str. TW14588]
gi|254594205|gb|ACT73566.1| type III secretion apparatus protein [Escherichia coli O157:H7
str. TW14359]
gi|257755625|dbj|BAI27127.1| type III secretion protein EpaQ [Escherichia coli O26:H11 str.
11368]
gi|257765895|dbj|BAI37390.1| type III secretion protein EpaQ [Escherichia coli O111:H- str.
11128]
gi|284922802|emb|CBG35890.1| type III secretion system protein [Escherichia coli 042]
gi|291322274|gb|EFE61703.1| type III secretion protein SctS [Escherichia coli B088]
gi|291426359|gb|EFE99391.1| antigen surface presentation protein SpaQ [Escherichia coli
FVEC1412]
gi|291432296|gb|EFF05278.1| type III secretion protein SctS [Escherichia coli B185]
gi|291468982|gb|EFF11473.1| hypothetical protein ECEG_02216 [Escherichia coli B354]
gi|298277228|gb|EFI18744.1| type III secretion protein SctS [Escherichia coli FVEC1302]
gi|299879819|gb|EFI88030.1| surface presentation of antigens protein SpaQ [Escherichia coli
MS 196-1]
gi|300315146|gb|EFJ64930.1| surface presentation of antigens protein SpaQ [Escherichia coli
MS 175-1]
gi|300358206|gb|EFJ74076.1| surface presentation of antigens protein SpaQ [Escherichia coli
MS 198-1]
gi|300394965|gb|EFJ78503.1| surface presentation of antigens protein SpaQ [Escherichia coli
MS 69-1]
gi|300450093|gb|EFK13713.1| surface presentation of antigens protein SpaQ [Escherichia coli
MS 116-1]
gi|300458660|gb|EFK22153.1| surface presentation of antigens protein SpaQ [Escherichia coli
MS 21-1]
gi|300526924|gb|EFK47993.1| surface presentation of antigens protein SpaQ [Escherichia coli
MS 119-7]
gi|301077833|gb|EFK92639.1| surface presentation of antigens protein SpaQ [Escherichia coli
MS 146-1]
gi|308122328|gb|EFO59590.1| surface presentation of antigens protein SpaQ [Escherichia coli
MS 145-7]
gi|309703221|emb|CBJ02556.1| type III secretion system protein [Escherichia coli ETEC H10407]
gi|320189198|gb|EFW63857.1| Surface presentation of antigens protein SpaQ [Escherichia coli
O157:H7 str. EC1212]
gi|323180304|gb|EFZ65856.1| epaQ [Escherichia coli 1180]
gi|323183414|gb|EFZ68811.1| epaQ [Escherichia coli 1357]
gi|323941618|gb|EGB37798.1| export protein 3 [Escherichia coli E482]
gi|323966654|gb|EGB62086.1| export protein 3 [Escherichia coli M863]
gi|323978519|gb|EGB73601.1| export protein 3 [Escherichia coli TW10509]
gi|326339061|gb|EGD62876.1| Surface presentation of antigens protein SpaQ [Escherichia coli
O157:H7 str. 1044]
gi|326343058|gb|EGD66826.1| Surface presentation of antigens protein SpaQ [Escherichia coli
O157:H7 str. 1125]
gi|327251615|gb|EGE63301.1| epaQ [Escherichia coli STEC_7v]
gi|331037020|gb|EGI09244.1| surface presentation of antigens protein SpaQ [Escherichia coli
H736]
gi|331058356|gb|EGI30337.1| surface presentation of antigens protein SpaQ [Escherichia coli
TA143]
gi|331063264|gb|EGI35177.1| surface presentation of antigens protein SpaQ [Escherichia coli
TA271]
gi|331068435|gb|EGI39830.1| surface presentation of antigens protein SpaQ [Escherichia coli
TA280]
gi|331073676|gb|EGI44997.1| surface presentation of antigens protein SpaQ [Escherichia coli
H591]
gi|332102806|gb|EGJ06152.1| type III secretion apparatus protein EpaQ [Shigella sp. D9]
gi|332344756|gb|AEE58090.1| Type III secretion apparatus protein EpaQ [Escherichia coli
UMNK88]
Length = 86
Score = 42.0 bits (97), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
D++ A++ IL SA + A F+G+L+ Q +TQ+QE TL F K++ V I +
Sbjct: 3 DIVFAGNRALYLILVMSAGPIAVATFVGLLVGLFQTVTQLQEQTLPFGVKLLCVSICFFL 62
Query: 65 SAPFIGGQISSF 76
+ + G ++ SF
Sbjct: 63 MSGWYGEKLYSF 74
>gi|297617155|ref|YP_003702314.1| flagellar biosynthetic protein FliQ [Syntrophothermus lipocalidus
DSM 12680]
gi|297144992|gb|ADI01749.1| flagellar biosynthetic protein FliQ [Syntrophothermus lipocalidus
DSM 12680]
Length = 91
Score = 42.0 bits (97), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 55/84 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + VL +A+ A++ L +AP+L ++ +G++I+ LQA TQIQE TLTFVPKII V +
Sbjct: 1 MYQDVVLGLAKEAVYATLLVAAPILLGSLLIGLVISILQATTQIQEQTLTFVPKIIVVLV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
+I+ P++ + +F +L I
Sbjct: 61 VIIVFGPWMLNTMVAFANNLLVNI 84
>gi|317121830|ref|YP_004101833.1| flagellar biosynthetic protein FliQ [Thermaerobacter marianensis
DSM 12885]
gi|315591810|gb|ADU51106.1| flagellar biosynthetic protein FliQ [Thermaerobacter marianensis
DSM 12885]
Length = 89
Score = 41.6 bits (96), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 46/69 (66%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +A VL + R A+WT L +APVL + +G++++ LQA TQ+ E TL FVPKI+A
Sbjct: 1 MTDAMVLTVGREALWTGLLVAAPVLVLTVLVGVVVSVLQAATQVTEQTLVFVPKILAAAA 60
Query: 61 TLIISAPFI 69
L++ P++
Sbjct: 61 ALLLFGPWM 69
>gi|242309972|ref|ZP_04809127.1| flagellar biosynthesis protein FliQ [Helicobacter pullorum MIT
98-5489]
gi|239523269|gb|EEQ63135.1| flagellar biosynthesis protein FliQ [Helicobacter pullorum MIT
98-5489]
Length = 88
Score = 41.6 bits (96), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 45/74 (60%)
Query: 3 EADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITL 62
EA ++ +A L S P+L + +G+LI+ QA TQI E+TLTFVPKI+AV + +
Sbjct: 2 EAQLMNLAIETYKITLVLSLPMLLVGLVIGLLISIFQATTQINEMTLTFVPKILAVIVVI 61
Query: 63 IISAPFIGGQISSF 76
I + P++ + F
Sbjct: 62 IFTMPWMLNMLIDF 75
>gi|15605292|ref|NP_220078.1| Yop proteins translocation protein S [Chlamydia trachomatis
D/UW-3/CX]
gi|76789300|ref|YP_328386.1| SctS [Chlamydia trachomatis A/HAR-13]
gi|166154778|ref|YP_001654896.1| type III secretion system, membrane protein [Chlamydia
trachomatis 434/Bu]
gi|166155653|ref|YP_001653908.1| type III secretion system, membrane protein [Chlamydia
trachomatis L2b/UCH-1/proctitis]
gi|237802992|ref|YP_002888186.1| type III secretion system, membrane protein [Chlamydia
trachomatis B/Jali20/OT]
gi|237804914|ref|YP_002889068.1| type III secretion system, membrane protein [Chlamydia
trachomatis B/TZ1A828/OT]
gi|255311382|ref|ZP_05353952.1| type III secretion system, membrane protein [Chlamydia
trachomatis 6276]
gi|255317683|ref|ZP_05358929.1| type III secretion system, membrane protein [Chlamydia
trachomatis 6276s]
gi|255507161|ref|ZP_05382800.1| type III secretion system, membrane protein [Chlamydia
trachomatis D(s)2923]
gi|301336053|ref|ZP_07224297.1| type III secretion system, membrane protein [Chlamydia
trachomatis L2tet1]
gi|3329004|gb|AAC68165.1| Yop proteins translocation protein S [Chlamydia trachomatis
D/UW-3/CX]
gi|76167830|gb|AAX50838.1| SctS [Chlamydia trachomatis A/HAR-13]
gi|165930766|emb|CAP04263.1| type III secretion system, membrane protein [Chlamydia
trachomatis 434/Bu]
gi|165931641|emb|CAP07217.1| type III secretion system, membrane protein [Chlamydia
trachomatis L2b/UCH-1/proctitis]
gi|231273214|emb|CAX10127.1| type III secretion system, membrane protein [Chlamydia
trachomatis B/TZ1A828/OT]
gi|231274226|emb|CAX11020.1| type III secretion system, membrane protein [Chlamydia
trachomatis B/Jali20/OT]
gi|289525608|emb|CBJ15086.1| type III secretion system, membrane protein [Chlamydia
trachomatis Sweden2]
gi|296435169|gb|ADH17347.1| type III secretion system, membrane protein [Chlamydia
trachomatis E/150]
gi|296436097|gb|ADH18271.1| type III secretion system, membrane protein [Chlamydia
trachomatis G/9768]
gi|296437025|gb|ADH19195.1| type III secretion system, membrane protein [Chlamydia
trachomatis G/11222]
gi|296437957|gb|ADH20118.1| type III secretion system, membrane protein [Chlamydia
trachomatis G/11074]
gi|296438889|gb|ADH21042.1| type III secretion system, membrane protein [Chlamydia
trachomatis E/11023]
gi|297140458|gb|ADH97216.1| type III secretion system, membrane protein [Chlamydia
trachomatis G/9301]
gi|297748693|gb|ADI51239.1| type III secretion innner membrane protein SctS [Chlamydia
trachomatis D-EC]
gi|297749573|gb|ADI52251.1| type III secretion inner membrane protein SctS [Chlamydia
trachomatis D-LC]
Length = 94
Score = 41.6 bits (96), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%)
Query: 6 VLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIIS 65
+ E + A+ IL SAP + A +GI++A QA TQIQE T F K++ +F TL+I+
Sbjct: 12 LFEYSYEALLLILIISAPPIILASVVGIMVAIFQAATQIQEQTFAFAIKLVVIFGTLMIT 71
Query: 66 APFIGGQISSF 76
++ I F
Sbjct: 72 GGWLCSMILRF 82
>gi|262393599|ref|YP_003285453.1| flagellar biosynthesis protein FliQ [Vibrio sp. Ex25]
gi|262337193|gb|ACY50988.1| flagellar biosynthesis protein FliQ [Vibrio sp. Ex25]
Length = 89
Score = 41.6 bits (96), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 45/81 (55%)
Query: 8 EIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAP 67
E+ R A+W +L ++ ++ +G+++A QA T I E TL+F+P++I + L++
Sbjct: 8 ELFREALWMVLIMVCAIIIPSLLIGLIVAIFQAATSINEQTLSFLPRLIVTLLALMLFGH 67
Query: 68 FIGGQISSFVTLVLSRIQSSL 88
++ + + ++ R+ L
Sbjct: 68 WMTQMLMEYFYGLIERLPQVL 88
>gi|289624374|ref|ZP_06457328.1| type III secretion component, putative [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|289646627|ref|ZP_06477970.1| type III secretion component, putative [Pseudomonas syringae pv.
aesculi str. 2250]
gi|298487105|ref|ZP_07005155.1| type III secretion system integral membrane protein [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
gi|298158348|gb|EFH99418.1| type III secretion system integral membrane protein [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
gi|330868642|gb|EGH03351.1| type III secretion component [Pseudomonas syringae pv. aesculi
str. 0893_23]
Length = 89
Score = 41.6 bits (96), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + L + A+ T+L SAP L A+ +G+ + LQALTQIQ+ TL V K++AV +
Sbjct: 1 MGQDVFLSLMNKALMTVLLLSAPALIVAIVVGLSVGLLQALTQIQDQTLPQVVKLVAVLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSR 83
++ P + GQ++ VL
Sbjct: 61 VIVFVGPLLAGQVAELGNQVLDN 83
>gi|256024632|ref|ZP_05438497.1| type III secretion apparatus protein [Escherichia sp. 4_1_40B]
Length = 86
Score = 41.6 bits (96), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
D++ A++ IL SA + A F+G+L+ Q +TQ+QE TL F K++ V I +
Sbjct: 3 DIVFAGNRALYLILVMSAGPIAVATFVGLLVGLFQTVTQLQEQTLPFGVKLLCVSICFFL 62
Query: 65 SAPFIGGQISSF 76
+ + G ++ SF
Sbjct: 63 MSGWYGERLYSF 74
>gi|193063539|ref|ZP_03044628.1| type III secretion apparatus protein EpaQ [Escherichia coli E22]
gi|194426266|ref|ZP_03058821.1| type III secretion apparatus protein EpaQ [Escherichia coli B171]
gi|260845524|ref|YP_003223302.1| type III secretion protein EpaQ [Escherichia coli O103:H2 str.
12009]
gi|14422434|dbj|BAB60841.1| epaQ [Escherichia coli]
gi|192930816|gb|EDV83421.1| type III secretion apparatus protein EpaQ [Escherichia coli E22]
gi|194415574|gb|EDX31841.1| type III secretion apparatus protein EpaQ [Escherichia coli B171]
gi|257760671|dbj|BAI32168.1| type III secretion protein EpaQ [Escherichia coli O103:H2 str.
12009]
Length = 86
Score = 41.6 bits (96), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
D++ A++ IL SA + A F+G+L+ Q +TQ+QE TL F K++ V I +
Sbjct: 3 DIVFAGNRALYLILVMSAGPIEVATFVGLLVGLFQTVTQLQEQTLPFGVKLLCVSICFFL 62
Query: 65 SAPFIGGQISSF 76
+ + G ++ SF
Sbjct: 63 MSGWYGEKLYSF 74
>gi|323491456|ref|ZP_08096640.1| flagellar biosynthesis protein FliQ [Vibrio brasiliensis LMG
20546]
gi|323314325|gb|EGA67405.1| flagellar biosynthesis protein FliQ [Vibrio brasiliensis LMG
20546]
Length = 89
Score = 41.6 bits (96), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 46/81 (56%)
Query: 8 EIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAP 67
E+ R ++W +L ++ ++ +G+++A QA T I E TL+F+P++I + L++ A
Sbjct: 8 ELFRESLWMVLIMVCAIIIPSLLIGLVVAIFQAATSINEQTLSFLPRLIVTLLALMLFAH 67
Query: 68 FIGGQISSFVTLVLSRIQSSL 88
++ + F ++ R+ L
Sbjct: 68 WMTQMLMEFFFSMIERMPQVL 88
>gi|261252333|ref|ZP_05944906.1| flagellar biosynthesis protein FliQ [Vibrio orientalis CIP
102891]
gi|260935724|gb|EEX91713.1| flagellar biosynthesis protein FliQ [Vibrio orientalis CIP
102891]
Length = 89
Score = 41.6 bits (96), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 46/81 (56%)
Query: 8 EIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAP 67
E+ R A+W +L ++ ++ +G+++A QA T I E TL+F+P++I + L++ A
Sbjct: 8 ELFRDALWMVLIMVCAIIIPSLLIGLVVAIFQAATSINEQTLSFLPRLIVTLLALMLFAH 67
Query: 68 FIGGQISSFVTLVLSRIQSSL 88
++ + F ++ R+ L
Sbjct: 68 WMTQILMEFFFSMIERLPQVL 88
>gi|188592195|ref|YP_001796793.1| flagellar biosynthesis protein fliq [Cupriavidus taiwanensis LMG
19424]
gi|170938569|emb|CAP63556.1| FliQ: flagellar biosynthesis protein. fliQ/mopD/spaQ family
[Cupriavidus taiwanensis LMG 19424]
Length = 89
Score = 41.6 bits (96), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 33/49 (67%)
Query: 36 AFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSRI 84
+ QA TQI E+TL+F+PK+IA+F T++++ P++ + ++ V I
Sbjct: 36 SLFQAATQINEMTLSFIPKLIALFATMVLAGPWMINAMVDYMREVFQSI 84
>gi|170690581|ref|ZP_02881748.1| type III secretion protein, HrpO family [Burkholderia graminis
C4D1M]
gi|170145016|gb|EDT13177.1| type III secretion protein, HrpO family [Burkholderia graminis
C4D1M]
Length = 87
Score = 41.6 bits (96), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 35/48 (72%)
Query: 21 SAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPF 68
S P++ A +G+ ++FLQA+T +Q+ TL+ K+IAV + ++I+APF
Sbjct: 21 SLPIVIVAALVGLGVSFLQAITSMQDQTLSHGVKLIAVTVAIVIAAPF 68
>gi|86146125|ref|ZP_01064451.1| flagellar biosynthesis protein [Vibrio sp. MED222]
gi|218708834|ref|YP_002416455.1| flagellar biosynthesis protein FliQ [Vibrio splendidus LGP32]
gi|85836072|gb|EAQ54204.1| flagellar biosynthesis protein [Vibrio sp. MED222]
gi|218321853|emb|CAV17830.1| Flagellar biosynthetic protein fliQ [Vibrio splendidus LGP32]
Length = 89
Score = 41.6 bits (96), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 49/88 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN +++ + A+W +L ++ ++ +G+++A QA T I E TL+F+P++I +
Sbjct: 1 MNPEIFVDLFQDALWMVLIMVCAIIIPSLLIGLVVAVFQAATSINEQTLSFLPRLIVTLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L++ A ++ + F ++ R+ L
Sbjct: 61 ALMMFAHWMTQMMMEFFFELIERLPQVL 88
>gi|330819398|ref|YP_004348260.1| Type III secretion inner membrane protein SctS [Burkholderia
gladioli BSR3]
gi|327371393|gb|AEA62748.1| Type III secretion inner membrane protein SctS [Burkholderia
gladioli BSR3]
Length = 87
Score = 41.6 bits (96), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 43/76 (56%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ ++ M L+ S P + A +G+ ++F+QA+T +Q+ TL V K+IAV I
Sbjct: 1 MDVDSLIRFTTQGMLLCLTVSLPPVIVAAVVGLGVSFVQAITSLQDQTLPQVIKLIAVTI 60
Query: 61 TLIISAPFIGGQISSF 76
T+I++AP + F
Sbjct: 61 TIIVAAPVCCAAVLHF 76
>gi|313905145|ref|ZP_07838514.1| export protein FliQ family 3 [Eubacterium cellulosolvens 6]
gi|313470048|gb|EFR65381.1| export protein FliQ family 3 [Eubacterium cellulosolvens 6]
Length = 88
Score = 41.6 bits (96), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAV 58
M + V++I R L + P L +M +GI++A QA TQI E TL FV K++++
Sbjct: 1 MTNSQVIDIVRQTFMMALRIALPFLLVSMLVGIILAIFQAATQINEQTLMFVLKLLSI 58
>gi|330953283|gb|EGH53543.1| type III secretion component [Pseudomonas syringae Cit 7]
Length = 89
Score = 41.6 bits (96), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + L + A+ T+L SAP L A+ +G+ + LQALTQIQ+ TL V K++ V +
Sbjct: 1 MGQDVFLSLMNQALMTVLLLSAPALIVAIVVGLGVGLLQALTQIQDQTLPQVVKLVGVLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSR 83
++ P + GQ++ VL
Sbjct: 61 VIVFVGPLLAGQVAELGNQVLDN 83
>gi|237800780|ref|ZP_04589241.1| type III secretion component [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331023638|gb|EGI03695.1| type III secretion component [Pseudomonas syringae pv. oryzae
str. 1_6]
Length = 89
Score = 41.6 bits (96), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + L + A+ T+L SAP L A+ +G+ + LQALTQIQ+ TL V K++ V +
Sbjct: 1 MGQDVFLSLMNQALMTVLLLSAPALIVAIVVGLSVGLLQALTQIQDQTLPQVVKLVGVLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSR 83
++ P + GQ++ VL
Sbjct: 61 VIVFVGPLLAGQVAELGNQVLDN 83
>gi|91223556|ref|ZP_01258821.1| flagellar biosynthesis protein Q [Vibrio alginolyticus 12G01]
gi|269965692|ref|ZP_06179805.1| flagellar biosynthesis protein [Vibrio alginolyticus 40B]
gi|91191642|gb|EAS77906.1| flagellar biosynthesis protein Q [Vibrio alginolyticus 12G01]
gi|269829760|gb|EEZ83996.1| flagellar biosynthesis protein [Vibrio alginolyticus 40B]
Length = 89
Score = 41.6 bits (96), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 45/81 (55%)
Query: 8 EIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAP 67
E+ R A+W +L ++ ++ +G+++A QA T I E TL+F+P++I + L++
Sbjct: 8 ELFREALWMVLIMVCAIIIPSLLIGLVVAIFQAATSINEQTLSFLPRLIVTLLALMLFGH 67
Query: 68 FIGGQISSFVTLVLSRIQSSL 88
++ + + ++ R+ L
Sbjct: 68 WMTQMLMEYFYGLIERLPQVL 88
>gi|226944501|ref|YP_002799574.1| flagellar biosynthetic protein [Azotobacter vinelandii DJ]
gi|226719428|gb|ACO78599.1| flagellar biosynthetic protein [Azotobacter vinelandii DJ]
Length = 89
Score = 41.6 bits (96), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 27/35 (77%)
Query: 35 IAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
++ QA TQI E+TL+F+PKI+AVF L+++ P +
Sbjct: 35 VSLFQAATQINEMTLSFIPKILAVFAVLVLAGPLM 69
>gi|261885291|ref|ZP_06009330.1| flagellar biosynthesis protein FliQ [Campylobacter fetus subsp.
venerealis str. Azul-94]
Length = 72
Score = 41.6 bits (96), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 42/66 (63%)
Query: 21 SAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLV 80
S P+L + + G++I+ QA TQI E+TL+FVPKII V + +I P++ Q+ F +
Sbjct: 4 SLPMLLAGLIAGLIISIFQATTQINEMTLSFVPKIILVVVIIIFLMPWMMNQMIEFTARI 63
Query: 81 LSRIQS 86
L+ I +
Sbjct: 64 LNMIPT 69
>gi|257487955|ref|ZP_05641996.1| type III secretion component, putative [Pseudomonas syringae pv.
tabaci ATCC 11528]
gi|320324518|gb|EFW80595.1| type III secretion component, putative [Pseudomonas syringae pv.
glycinea str. B076]
gi|320328891|gb|EFW84890.1| type III secretion component, putative [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330985217|gb|EGH83320.1| type III secretion component [Pseudomonas syringae pv. lachrymans
str. M301315]
gi|331008644|gb|EGH88700.1| type III secretion component [Pseudomonas syringae pv. tabaci
ATCC 11528]
Length = 89
Score = 41.6 bits (96), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + L + A+ T+L SAP L A+ +G+ + LQALTQIQ+ TL V K++AV +
Sbjct: 1 MGQDVFLSLMNKALMTVLLLSAPALVVAIVVGLSVGLLQALTQIQDQTLPQVVKLVAVLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSR 83
++ P + GQ++ VL
Sbjct: 61 VIVFVGPLLAGQVAELGNQVLDN 83
>gi|149191146|ref|ZP_01869404.1| flagellar biosynthetic protein [Vibrio shilonii AK1]
gi|148834984|gb|EDL51963.1| flagellar biosynthetic protein [Vibrio shilonii AK1]
Length = 89
Score = 41.2 bits (95), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 48/76 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ + + + A+W I+ + ++ ++ +G+++A QA+TQ+ E TL+F+P+++ +
Sbjct: 1 MSPEEAVTLVSQAIWVIILMVSVLIVPSLIVGLVVAIFQAVTQVNEQTLSFLPRLLVTLL 60
Query: 61 TLIISAPFIGGQISSF 76
++I++ ++ +IS
Sbjct: 61 SIILAGHWLLQEISDL 76
>gi|284041538|ref|YP_003391878.1| flagellar biosynthetic protein FliQ [Conexibacter woesei DSM
14684]
gi|283945759|gb|ADB48503.1| flagellar biosynthetic protein FliQ [Conexibacter woesei DSM
14684]
Length = 91
Score = 41.2 bits (95), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 30/38 (78%)
Query: 39 QALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSF 76
QA+TQIQE +L+F+PKIIA + L+++ P++ Q+ ++
Sbjct: 39 QAITQIQEQSLSFIPKIIATAVVLVVAGPWMLNQLIAY 76
>gi|260768790|ref|ZP_05877724.1| flagellar biosynthesis protein FliQ [Vibrio furnissii CIP 102972]
gi|260616820|gb|EEX42005.1| flagellar biosynthesis protein FliQ [Vibrio furnissii CIP 102972]
gi|315180493|gb|ADT87407.1| flagellar biosynthetic protein [Vibrio furnissii NCTC 11218]
Length = 89
Score = 41.2 bits (95), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Query: 3 EADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITL 62
E V +A A +W I++ + ++ ++ +G+++A QA+TQI E TL+F+P+++ +++
Sbjct: 4 EMSVTLVAHA-LWVIIAMVSVLIVPSLLVGLIVAVFQAVTQINEQTLSFLPRLLVTMVSI 62
Query: 63 IISAPFIGGQISSF 76
I++ ++ ++++
Sbjct: 63 IVTGHWLLMKLTTL 76
>gi|74317629|ref|YP_315369.1| flagellar biosynthesis protein FliQ [Thiobacillus denitrificans
ATCC 25259]
gi|74057124|gb|AAZ97564.1| flagellar biosynthesis protein FliQ [Thiobacillus denitrificans
ATCC 25259]
Length = 89
Score = 41.2 bits (95), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 51/84 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ I R A+ + SAPVL + +G++++ QA TQI + +L+F+PK++AV
Sbjct: 1 MTPESVMTIGRTALEMTILVSAPVLLVTLVVGLVVSVFQAATQINDASLSFIPKVLAVLA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
T ++ P++ ++ ++ VL+ +
Sbjct: 61 TFALAGPWMLTVMTDYMRRVLTEL 84
>gi|326796454|ref|YP_004314274.1| flagellar biosynthetic protein FliQ [Marinomonas mediterranea
MMB-1]
gi|326547218|gb|ADZ92438.1| flagellar biosynthetic protein FliQ [Marinomonas mediterranea
MMB-1]
Length = 89
Score = 41.2 bits (95), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 46/76 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ VL++ + I+ A V+ ++ +G++++ QA TQI E TL+F+P++I +
Sbjct: 1 MDPQVVLDLYGQGFYLIVLLVAAVMVPSLAVGLMVSIFQAATQINEQTLSFLPRLIVTIL 60
Query: 61 TLIISAPFIGGQISSF 76
T++ P++ +++ F
Sbjct: 61 TIMYLGPWLLTKLTDF 76
>gi|189426338|ref|YP_001953515.1| flagellar biosynthetic protein FliQ [Geobacter lovleyi SZ]
gi|189422597|gb|ACD96995.1| flagellar biosynthetic protein FliQ [Geobacter lovleyi SZ]
Length = 89
Score = 41.2 bits (95), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 30/46 (65%)
Query: 31 LGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSF 76
+G+ I+ QA+T I E TL F PKI+AV + +II P++ +S F
Sbjct: 31 VGLAISVFQAVTSINEATLAFAPKIVAVMVAVIIFFPWMMSYMSDF 76
>gi|118474914|ref|YP_891408.1| flagellar biosynthesis protein FliQ [Campylobacter fetus subsp.
fetus 82-40]
gi|118414140|gb|ABK82560.1| flagellar biosynthetic protein FliQ [Campylobacter fetus subsp.
fetus 82-40]
Length = 88
Score = 41.2 bits (95), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 42/66 (63%)
Query: 21 SAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLV 80
S P+L + + G++I+ QA TQI E+TL+FVPKII V + +I P++ Q+ F +
Sbjct: 20 SLPMLLAGLIAGLIISIFQATTQINEMTLSFVPKIILVVVIIIFLMPWMMNQMIEFTARI 79
Query: 81 LSRIQS 86
L+ I +
Sbjct: 80 LNMIPT 85
>gi|34498459|ref|NP_902674.1| flagellar biosynthetic protein FliQ [Chromobacterium violaceum
ATCC 12472]
gi|34104314|gb|AAQ60673.1| flagellar biosynthetic protein FliQ [Chromobacterium violaceum
ATCC 12472]
Length = 90
Score = 41.2 bits (95), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 36/57 (63%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSRIQSSL 88
G++++ +QA TQI E TL+F+P+++ V +T+ ++ +I G + F + R S +
Sbjct: 33 GVVVSLIQAATQINEQTLSFLPRLLIVLLTIALAGHWITGYLMDFCVAMFQRAASQV 89
>gi|238023705|ref|YP_002907937.1| type III secretion-associated protein [Burkholderia glumae BGR1]
gi|237878370|gb|ACR30702.1| Type III secretion-associated protein [Burkholderia glumae BGR1]
Length = 87
Score = 41.2 bits (95), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ ++ M L+ S P + A +G+ ++F+QA+T +Q+ TL V K++AV I
Sbjct: 1 MDVDSLIRFTTEGMLLCLTVSLPPVIVAAVVGLGVSFVQAITSLQDQTLPQVIKLVAVTI 60
Query: 61 TLIISAPFIGGQISSF 76
T++I+AP + F
Sbjct: 61 TIVIAAPVCCAAVLHF 76
>gi|53717670|ref|YP_106656.1| flagellar biosynthesis protein FliQ [Burkholderia pseudomallei
K96243]
gi|53724242|ref|YP_104209.1| flagellar biosynthesis protein FliQ [Burkholderia mallei ATCC
23344]
gi|67641567|ref|ZP_00440343.1| flagellar biosynthetic protein FliQ [Burkholderia mallei GB8
horse 4]
gi|76809084|ref|YP_331660.1| flagellar biosynthesis protein FliQ [Burkholderia pseudomallei
1710b]
gi|121600763|ref|YP_994547.1| flagellar biosynthesis protein FliQ [Burkholderia mallei SAVP1]
gi|124384525|ref|YP_001027837.1| flagellar biosynthesis protein FliQ [Burkholderia mallei NCTC
10229]
gi|126440833|ref|YP_001057088.1| flagellar biosynthesis protein FliQ [Burkholderia pseudomallei
668]
gi|126449410|ref|YP_001082215.1| flagellar biosynthesis protein FliQ [Burkholderia mallei NCTC
10247]
gi|126454577|ref|YP_001064318.1| flagellar biosynthesis protein FliQ [Burkholderia pseudomallei
1106a]
gi|134281561|ref|ZP_01768269.1| flagellar biosynthetic protein FliQ [Burkholderia pseudomallei
305]
gi|167001620|ref|ZP_02267414.1| flagellar biosynthetic protein FliQ [Burkholderia mallei PRL-20]
gi|167717398|ref|ZP_02400634.1| flagellar biosynthesis protein FliQ [Burkholderia pseudomallei
DM98]
gi|167736440|ref|ZP_02409214.1| flagellar biosynthesis protein FliQ [Burkholderia pseudomallei
14]
gi|167813516|ref|ZP_02445196.1| flagellar biosynthesis protein FliQ [Burkholderia pseudomallei
91]
gi|167822058|ref|ZP_02453529.1| flagellar biosynthesis protein FliQ [Burkholderia pseudomallei 9]
gi|167843671|ref|ZP_02469179.1| flagellar biosynthesis protein FliQ [Burkholderia pseudomallei
B7210]
gi|167892142|ref|ZP_02479544.1| flagellar biosynthesis protein FliQ [Burkholderia pseudomallei
7894]
gi|167900654|ref|ZP_02487859.1| flagellar biosynthesis protein FliQ [Burkholderia pseudomallei
NCTC 13177]
gi|167908874|ref|ZP_02495965.1| flagellar biosynthesis protein FliQ [Burkholderia pseudomallei
112]
gi|167916913|ref|ZP_02504004.1| flagellar biosynthesis protein FliQ [Burkholderia pseudomallei
BCC215]
gi|217424032|ref|ZP_03455532.1| flagellar biosynthetic protein FliQ [Burkholderia pseudomallei
576]
gi|226193193|ref|ZP_03788803.1| flagellar biosynthetic protein FliQ [Burkholderia pseudomallei
Pakistan 9]
gi|237814426|ref|YP_002898877.1| flagellar biosynthetic protein FliQ [Burkholderia pseudomallei
MSHR346]
gi|242317919|ref|ZP_04816935.1| flagellar biosynthetic protein FliQ [Burkholderia pseudomallei
1106b]
gi|254175228|ref|ZP_04881889.1| flagellar biosynthetic protein FliQ [Burkholderia mallei ATCC
10399]
gi|254184096|ref|ZP_04890687.1| flagellar biosynthetic protein FliQ [Burkholderia pseudomallei
1655]
gi|254186562|ref|ZP_04893079.1| flagellar biosynthetic protein FliQ [Burkholderia pseudomallei
Pasteur 52237]
gi|254194698|ref|ZP_04901129.1| flagellar biosynthetic protein FliQ [Burkholderia pseudomallei
S13]
gi|254201282|ref|ZP_04907646.1| flagellar biosynthetic protein FliQ [Burkholderia mallei FMH]
gi|254206624|ref|ZP_04912975.1| flagellar biosynthetic protein FliQ [Burkholderia mallei JHU]
gi|254259098|ref|ZP_04950152.1| flagellar biosynthetic protein FliQ [Burkholderia pseudomallei
1710a]
gi|254298636|ref|ZP_04966087.1| flagellar biosynthetic protein FliQ [Burkholderia pseudomallei
406e]
gi|254357357|ref|ZP_04973631.1| flagellar biosynthetic protein FliQ [Burkholderia mallei
2002721280]
gi|52208084|emb|CAH34014.1| flagellar biosynthetic protein [Burkholderia pseudomallei K96243]
gi|52427665|gb|AAU48258.1| flagellar biosynthetic protein FliQ [Burkholderia mallei ATCC
23344]
gi|76578537|gb|ABA48012.1| flagellar biosynthetic protein FliQ [Burkholderia pseudomallei
1710b]
gi|121229573|gb|ABM52091.1| flagellar biosynthetic protein FliQ [Burkholderia mallei SAVP1]
gi|124292545|gb|ABN01814.1| flagellar biosynthetic protein FliQ [Burkholderia mallei NCTC
10229]
gi|126220326|gb|ABN83832.1| flagellar biosynthetic protein FliQ [Burkholderia pseudomallei
668]
gi|126228219|gb|ABN91759.1| flagellar biosynthetic protein FliQ [Burkholderia pseudomallei
1106a]
gi|126242280|gb|ABO05373.1| flagellar biosynthetic protein FliQ [Burkholderia mallei NCTC
10247]
gi|134247228|gb|EBA47314.1| flagellar biosynthetic protein FliQ [Burkholderia pseudomallei
305]
gi|147747176|gb|EDK54252.1| flagellar biosynthetic protein FliQ [Burkholderia mallei FMH]
gi|147752166|gb|EDK59232.1| flagellar biosynthetic protein FliQ [Burkholderia mallei JHU]
gi|148026421|gb|EDK84506.1| flagellar biosynthetic protein FliQ [Burkholderia mallei
2002721280]
gi|157808619|gb|EDO85789.1| flagellar biosynthetic protein FliQ [Burkholderia pseudomallei
406e]
gi|157934247|gb|EDO89917.1| flagellar biosynthetic protein FliQ [Burkholderia pseudomallei
Pasteur 52237]
gi|160696273|gb|EDP86243.1| flagellar biosynthetic protein FliQ [Burkholderia mallei ATCC
10399]
gi|169651448|gb|EDS84141.1| flagellar biosynthetic protein FliQ [Burkholderia pseudomallei
S13]
gi|184214628|gb|EDU11671.1| flagellar biosynthetic protein FliQ [Burkholderia pseudomallei
1655]
gi|217393095|gb|EEC33117.1| flagellar biosynthetic protein FliQ [Burkholderia pseudomallei
576]
gi|225934793|gb|EEH30770.1| flagellar biosynthetic protein FliQ [Burkholderia pseudomallei
Pakistan 9]
gi|237505331|gb|ACQ97649.1| flagellar biosynthetic protein FliQ [Burkholderia pseudomallei
MSHR346]
gi|238522520|gb|EEP85964.1| flagellar biosynthetic protein FliQ [Burkholderia mallei GB8
horse 4]
gi|242141158|gb|EES27560.1| flagellar biosynthetic protein FliQ [Burkholderia pseudomallei
1106b]
gi|243062630|gb|EES44816.1| flagellar biosynthetic protein FliQ [Burkholderia mallei PRL-20]
gi|254217787|gb|EET07171.1| flagellar biosynthetic protein FliQ [Burkholderia pseudomallei
1710a]
Length = 90
Score = 41.2 bits (95), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 55/86 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +V+ +A AM+ L +AP+L A+ +G++++ QA TQI E TL+F+PK++AV
Sbjct: 1 MTPENVMTLAHQAMYIGLLLAAPLLLVALAVGLVVSLFQAATQINEATLSFIPKLLAVAA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
T++I+ P++ + ++ L R+ +
Sbjct: 61 TMVIAGPWMLSTMIDYLRETLLRVAT 86
>gi|21672368|ref|NP_660435.1| flagellar biosynthetic protein FliQ [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
gi|25008466|sp|Q8KA36|FLIQ_BUCAP RecName: Full=Flagellar biosynthetic protein FliQ
gi|21622973|gb|AAM67646.1| flagellar biosynthetic protein FliQ [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
Length = 90
Score = 41.2 bits (95), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 36/55 (65%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSRIQS 86
G++I+ LQA TQ+ E TL+F+PKII++ + + + P++ G + ++ + I S
Sbjct: 32 GLIISILQAATQVNEQTLSFIPKIISILVVITLLGPWMLGVMLDYMHNLFYNIPS 86
>gi|292489151|ref|YP_003532038.1| flagellar biosynthetic protein FliQ [Erwinia amylovora CFBP1430]
gi|292900269|ref|YP_003539638.1| flagellar biosynthetic protein [Erwinia amylovora ATCC 49946]
gi|291200117|emb|CBJ47243.1| flagellar biosynthetic protein [Erwinia amylovora ATCC 49946]
gi|291554585|emb|CBA22217.1| Flagellar biosynthetic protein FliQ [Erwinia amylovora CFBP1430]
gi|312173309|emb|CBX81564.1| Flagellar biosynthetic protein FliQ [Erwinia amylovora ATCC
BAA-2158]
Length = 89
Score = 41.2 bits (95), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + A+ L + P+L +A+ G++I+ LQA TQI E+T+TF+PKI+ +
Sbjct: 1 MTPESVMSLGIQAIKLGLMVAGPLLLAALATGLIISILQAATQINEMTMTFIPKILVIIG 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
++ P++ + L L+ I
Sbjct: 61 VAVVLGPWMMRNFIEYTRLTLTNI 84
>gi|51103120|gb|AAT96263.1| HrcS [Pseudomonas viridiflava]
gi|51103162|gb|AAT96304.1| HrcS [Pseudomonas viridiflava]
gi|51103203|gb|AAT96344.1| HrcS [Pseudomonas viridiflava]
Length = 86
Score = 40.8 bits (94), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 48/83 (57%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
+ L + + AM ++ SAP L A+ +G++ + LQA+ Q+Q+ TL F K++AV + L +
Sbjct: 2 ETLTLFKQAMMLVVVLSAPPLIVAVVVGVITSLLQAVMQLQDQTLPFAIKLVAVGLALAL 61
Query: 65 SAPFIGGQISSFVTLVLSRIQSS 87
+ +IG ++ L S I +
Sbjct: 62 TGRWIGIELMQLAYLSFSMISQT 84
>gi|148976242|ref|ZP_01812966.1| flagellar biosynthetic protein [Vibrionales bacterium SWAT-3]
gi|145964336|gb|EDK29591.1| flagellar biosynthetic protein [Vibrionales bacterium SWAT-3]
Length = 89
Score = 40.8 bits (94), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 51/87 (58%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ + + + A+W I+ + ++ ++ +G+++A QA+TQ+ E TL+F+P+++ +
Sbjct: 1 MSPEEAVTLVSQAIWLIILMVSVLIVPSLVVGLVVAIFQAVTQVNEQTLSFLPRLLVTLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
+I++ ++ +I+ + + I S
Sbjct: 61 CIILAGHWLLQEINDLFLFIFNTIPSK 87
>gi|291286236|ref|YP_003503052.1| flagellar biosynthetic protein FliQ [Denitrovibrio acetiphilus
DSM 12809]
gi|290883396|gb|ADD67096.1| flagellar biosynthetic protein FliQ [Denitrovibrio acetiphilus
DSM 12809]
Length = 90
Score = 40.8 bits (94), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 39/49 (79%)
Query: 21 SAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
+AP+L + +G+LI+ Q++TQIQE+TLTF+PKII V + +++ AP++
Sbjct: 21 AAPMLGIGLIIGLLISIFQSVTQIQEMTLTFIPKIIGVVVAVMVFAPWM 69
>gi|149189859|ref|ZP_01868139.1| flagellar biosynthetic protein [Vibrio shilonii AK1]
gi|148836345|gb|EDL53302.1| flagellar biosynthetic protein [Vibrio shilonii AK1]
Length = 89
Score = 40.8 bits (94), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 42/72 (58%)
Query: 13 AMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQ 72
A+W I+S ++ + +G++IA QA TQIQE TL+F+PK++A + +I + ++ +
Sbjct: 13 AVWLIISIVMVLVVPGLLVGLVIAVFQAATQIQEQTLSFLPKLLATLLMVIFAGHWMLRK 72
Query: 73 ISSFVTLVLSRI 84
I + I
Sbjct: 73 IMELFDFLFHNI 84
>gi|78064697|ref|YP_367466.1| flagellar biosynthesis protein FliQ [Burkholderia sp. 383]
gi|77965442|gb|ABB06822.1| Flagellar biosynthesis protein FliQ [Burkholderia sp. 383]
Length = 90
Score = 40.8 bits (94), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 26/31 (83%)
Query: 39 QALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
QA TQI E TL+F+PK++AV +TL+I+ P++
Sbjct: 39 QAATQINESTLSFIPKLLAVAVTLVIAGPWM 69
>gi|53722432|ref|YP_111417.1| type III secretion-associated protein [Burkholderia pseudomallei
K96243]
gi|167724023|ref|ZP_02407259.1| type III secretion-associated protein [Burkholderia pseudomallei
DM98]
gi|167820163|ref|ZP_02451843.1| type III secretion-associated protein [Burkholderia pseudomallei
91]
gi|52212846|emb|CAH38880.1| putative type III secretion-associated protein [Burkholderia
pseudomallei K96243]
Length = 87
Score = 40.8 bits (94), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 38/55 (69%)
Query: 13 AMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAP 67
AM L+ S P + A +G+ ++F+QA+T +Q+ TL V K+IAV IT++++AP
Sbjct: 13 AMLLCLTVSLPPVIVAALVGLGVSFVQAITSLQDQTLPQVLKLIAVTITIMVAAP 67
>gi|28899012|ref|NP_798617.1| flagellar biosynthesis protein FliQ [Vibrio parahaemolyticus RIMD
2210633]
gi|153837022|ref|ZP_01989689.1| flagellar biosynthetic protein FliQ [Vibrio parahaemolyticus
AQ3810]
gi|260365242|ref|ZP_05777799.1| flagellar biosynthetic protein FliQ [Vibrio parahaemolyticus
K5030]
gi|260878792|ref|ZP_05891147.1| flagellar biosynthetic protein FliQ [Vibrio parahaemolyticus
AN-5034]
gi|260897387|ref|ZP_05905883.1| flagellar biosynthetic protein FliQ [Vibrio parahaemolyticus
Peru-466]
gi|4322008|gb|AAD15911.1| polar flagellar assembly protein FliQ [Vibrio parahaemolyticus]
gi|28807231|dbj|BAC60501.1| polar flagellar assembly protein FliQ [Vibrio parahaemolyticus
RIMD 2210633]
gi|149749795|gb|EDM60540.1| flagellar biosynthetic protein FliQ [Vibrio parahaemolyticus
AQ3810]
gi|308088234|gb|EFO37929.1| flagellar biosynthetic protein FliQ [Vibrio parahaemolyticus
Peru-466]
gi|308094198|gb|EFO43893.1| flagellar biosynthetic protein FliQ [Vibrio parahaemolyticus
AN-5034]
gi|308115483|gb|EFO53023.1| flagellar biosynthetic protein FliQ [Vibrio parahaemolyticus
K5030]
gi|328474451|gb|EGF45256.1| flagellar biosynthesis protein FliQ [Vibrio parahaemolyticus
10329]
Length = 89
Score = 40.8 bits (94), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 45/81 (55%)
Query: 8 EIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAP 67
E+ R A+W +L ++ ++ +G+++A QA T I E TL+F+P++I + L++
Sbjct: 8 ELFREALWMVLIMVCAIIIPSLLIGLVVAIFQAATSINEQTLSFLPRLIVTLLALMLFGH 67
Query: 68 FIGGQISSFVTLVLSRIQSSL 88
++ + + ++ R+ L
Sbjct: 68 WMTQMLMEYFFGLIERLPQVL 88
>gi|259907617|ref|YP_002647973.1| Flagellar biosynthetic protein FliQ [Erwinia pyrifoliae Ep1/96]
gi|224963239|emb|CAX54723.1| Flagellar biosynthetic protein FliQ [Erwinia pyrifoliae Ep1/96]
gi|283477459|emb|CAY73375.1| Flagellar biosynthetic protein FliQ [Erwinia pyrifoliae DSM
12163]
Length = 89
Score = 40.8 bits (94), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + A+ L + P+L +A+ G++I+ LQA TQI E+T+TF+PKI+ +
Sbjct: 1 MTPESVMALGIQAIKLGLMVAGPLLLAALATGLIISILQAATQINEMTMTFIPKILVIIG 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
++ P++ + L L+ I
Sbjct: 61 VAVVLGPWMMRNFIEYTRLTLTNI 84
>gi|51587259|emb|CAE53649.1| putative HrcS [Pseudomonas gingeri]
Length = 78
Score = 40.8 bits (94), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 38/59 (64%)
Query: 21 SAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTL 79
+AP L A+ +G++ + LQAL QIQ+ TL F K+ AV +TL + +IG ++ F+ L
Sbjct: 8 TAPPLGVAVLVGVITSLLQALMQIQDQTLPFGIKLAAVGLTLAATGRWIGVELIQFINL 66
>gi|123443726|ref|YP_001007697.1| type III secretion apparatus protein [Yersinia enterocolitica
subsp. enterocolitica 8081]
gi|15088599|gb|AAK84110.1|AF369954_8 YsaS [Yersinia enterocolitica]
gi|122090687|emb|CAL13563.1| type III secretion apparatus protein [Yersinia enterocolitica
subsp. enterocolitica 8081]
Length = 89
Score = 40.8 bits (94), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 47/72 (65%), Gaps = 1/72 (1%)
Query: 11 RAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIG 70
+A + +L S+ PV+ A +G+LI +Q +TQ+QE TL F K++AVF +L + + ++
Sbjct: 10 KAMLLIVLLSAIPVMV-ATVVGLLIGLIQTVTQLQEQTLPFGIKLLAVFGSLFMISGWLS 68
Query: 71 GQISSFVTLVLS 82
++ ++ T VL+
Sbjct: 69 DKVMNYATEVLA 80
>gi|322379080|ref|ZP_08053483.1| flagellar biosynthesis protein FliQ [Helicobacter suis HS1]
gi|322379944|ref|ZP_08054221.1| flagellar biosynthesis protein FliQ [Helicobacter suis HS5]
gi|321147642|gb|EFX42265.1| flagellar biosynthesis protein FliQ [Helicobacter suis HS5]
gi|321148572|gb|EFX43069.1| flagellar biosynthesis protein FliQ [Helicobacter suis HS1]
Length = 97
Score = 40.4 bits (93), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 47/74 (63%)
Query: 3 EADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITL 62
EA ++++A L +S PVL + +G+L++ QA TQI E+TL+FVPKI+AV +
Sbjct: 11 EAQLMKLAIETYKITLMTSLPVLLVGLVVGLLVSIFQATTQINEMTLSFVPKILAVIAVI 70
Query: 63 IISAPFIGGQISSF 76
I++ P++ + +
Sbjct: 71 ILTMPWMLNMLLDY 84
>gi|153834121|ref|ZP_01986788.1| flagellar biosynthetic protein FliQ [Vibrio harveyi HY01]
gi|156975419|ref|YP_001446326.1| flagellar biosynthesis protein FliQ [Vibrio harveyi ATCC
BAA-1116]
gi|269961631|ref|ZP_06175993.1| flagellar biosynthesis protein [Vibrio harveyi 1DA3]
gi|148869491|gb|EDL68489.1| flagellar biosynthetic protein FliQ [Vibrio harveyi HY01]
gi|156527013|gb|ABU72099.1| hypothetical protein VIBHAR_03150 [Vibrio harveyi ATCC BAA-1116]
gi|269833672|gb|EEZ87769.1| flagellar biosynthesis protein [Vibrio harveyi 1DA3]
Length = 89
Score = 40.4 bits (93), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 45/81 (55%)
Query: 8 EIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAP 67
E+ R A+W +L ++ ++ +G+++A QA T I E TL+F+P++I + L++
Sbjct: 8 ELFRDALWMVLIMVCAIIIPSLLIGLVVAIFQAATSINEQTLSFLPRLIVTLLALMLFGH 67
Query: 68 FIGGQISSFVTLVLSRIQSSL 88
++ + + ++ R+ L
Sbjct: 68 WMTQMLMEYFFGLIERLPQVL 88
>gi|209522297|ref|ZP_03270924.1| flagellar biosynthetic protein FliQ [Burkholderia sp. H160]
gi|209497273|gb|EDZ97501.1| flagellar biosynthetic protein FliQ [Burkholderia sp. H160]
Length = 89
Score = 40.4 bits (93), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 26/31 (83%)
Query: 39 QALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
QA TQI E TL+F+PK++A+ +TL+I+ P++
Sbjct: 39 QAATQINETTLSFIPKLLAIAVTLVIAGPWM 69
>gi|254200991|ref|ZP_04907356.1| type III secretion system protein BsaX [Burkholderia mallei FMH]
gi|254204955|ref|ZP_04911308.1| type III secretion system protein BsaX [Burkholderia mallei JHU]
gi|147748603|gb|EDK55678.1| type III secretion system protein BsaX [Burkholderia mallei FMH]
gi|147754541|gb|EDK61605.1| type III secretion system protein BsaX [Burkholderia mallei JHU]
Length = 97
Score = 40.4 bits (93), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 34/51 (66%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLS 82
G+ I Q +TQ+QE TL F K++AVF L++ + + GG++ +F T +LS
Sbjct: 43 GLAIGLFQTVTQLQEQTLPFGLKMLAVFGCLMMLSGWFGGKLLAFATEMLS 93
>gi|254251035|ref|ZP_04944353.1| Flagellar biosynthesis pathway component FliQ [Burkholderia
dolosa AUO158]
gi|124893644|gb|EAY67524.1| Flagellar biosynthesis pathway component FliQ [Burkholderia
dolosa AUO158]
Length = 90
Score = 40.4 bits (93), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 25/31 (80%)
Query: 39 QALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
QA TQI E TL+F+PK++AV TL+I+ P++
Sbjct: 39 QAATQINEATLSFIPKLLAVAATLVIAGPWM 69
>gi|167566197|ref|ZP_02359113.1| type III secretion protein, HrpO family [Burkholderia
oklahomensis EO147]
gi|167573307|ref|ZP_02366181.1| type III secretion protein, HrpO family [Burkholderia
oklahomensis C6786]
Length = 84
Score = 40.4 bits (93), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 34/51 (66%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLS 82
G+ I Q +TQ+QE TL F K++AVF L++ + + GG++ +F T +LS
Sbjct: 30 GLAIGLFQTVTQLQEQTLPFGLKMLAVFGCLMMLSGWFGGKLLAFATEMLS 80
>gi|310764877|gb|ADP09827.1| flagellar biosynthetic protein [Erwinia sp. Ejp617]
Length = 83
Score = 40.4 bits (93), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 41/67 (61%)
Query: 18 LSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFV 77
L + P+L +A+ G++I+ LQA TQI E+T+TF+PKI+ + ++ P++ +
Sbjct: 12 LMVAGPLLLAALATGLIISILQAATQINEMTMTFIPKILVIIGVAVVLGPWMMRNFIEYT 71
Query: 78 TLVLSRI 84
L L+ I
Sbjct: 72 RLTLTNI 78
>gi|53716463|ref|YP_106125.1| type III secretion system protein BsaX [Burkholderia mallei ATCC
23344]
gi|53722557|ref|YP_111542.1| surface presentation of antigens protein [Burkholderia
pseudomallei K96243]
gi|67641436|ref|ZP_00440215.1| EpaQ [Burkholderia mallei GB8 horse 4]
gi|76817353|ref|YP_335735.1| type III secretion system protein BsaX [Burkholderia pseudomallei
1710b]
gi|83716660|ref|YP_439034.1| type III secretion system protein BsaX [Burkholderia
thailandensis E264]
gi|124382058|ref|YP_001025865.1| type III secretion system protein BsaX [Burkholderia mallei NCTC
10229]
gi|126445290|ref|YP_001063160.1| HrpO family type III secretion protein [Burkholderia pseudomallei
668]
gi|126446907|ref|YP_001077950.1| type III secretion system protein BsaX [Burkholderia mallei NCTC
10247]
gi|126457838|ref|YP_001076111.1| HrpO family type III secretion protein [Burkholderia pseudomallei
1106a]
gi|134282032|ref|ZP_01768738.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 305]
gi|167004215|ref|ZP_02269982.1| type III secretion system protein BsaX [Burkholderia mallei
PRL-20]
gi|167577440|ref|ZP_02370314.1| type III secretion protein, HrpO family [Burkholderia
thailandensis TXDOH]
gi|167615591|ref|ZP_02384226.1| type III secretion protein, HrpO family [Burkholderia
thailandensis Bt4]
gi|167724225|ref|ZP_02407461.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei DM98]
gi|167743200|ref|ZP_02415974.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 14]
gi|167820374|ref|ZP_02452054.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 91]
gi|167828746|ref|ZP_02460217.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 9]
gi|167840167|ref|ZP_02466851.1| type III secretion protein, HrpO family [Burkholderia
thailandensis MSMB43]
gi|167850201|ref|ZP_02475709.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei B7210]
gi|167898808|ref|ZP_02486209.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 7894]
gi|167907136|ref|ZP_02494341.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei NCTC 13177]
gi|167915490|ref|ZP_02502581.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 112]
gi|167923335|ref|ZP_02510426.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei BCC215]
gi|217425115|ref|ZP_03456610.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 576]
gi|226196058|ref|ZP_03791644.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei Pakistan 9]
gi|237507342|ref|ZP_04520057.1| EpaQ [Burkholderia pseudomallei MSHR346]
gi|242313286|ref|ZP_04812303.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 1106b]
gi|254175967|ref|ZP_04882625.1| type III secretion system protein BsaX [Burkholderia mallei ATCC
10399]
gi|254185168|ref|ZP_04891757.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 1655]
gi|254186855|ref|ZP_04893371.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei Pasteur 52237]
gi|254193621|ref|ZP_04900053.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei S13]
gi|254262650|ref|ZP_04953515.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 1710a]
gi|254301457|ref|ZP_04968901.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 406e]
gi|254359074|ref|ZP_04975346.1| type III secretion system protein BsaX [Burkholderia mallei
2002721280]
gi|257142142|ref|ZP_05590404.1| HrpO family type III secretion protein [Burkholderia
thailandensis E264]
gi|52212971|emb|CAH39009.1| surface presentation of antigens protein [Burkholderia
pseudomallei K96243]
gi|52422433|gb|AAU46003.1| type III secretion system protein BsaX [Burkholderia mallei ATCC
23344]
gi|76581826|gb|ABA51300.1| type III secretion system protein BsaX [Burkholderia pseudomallei
1710b]
gi|83650485|gb|ABC34549.1| type III secretion system protein BsaX [Burkholderia
thailandensis E264]
gi|126224781|gb|ABN88286.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 668]
gi|126231606|gb|ABN95019.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 1106a]
gi|126239761|gb|ABO02873.1| type III secretion system protein BsaX [Burkholderia mallei NCTC
10247]
gi|134246561|gb|EBA46649.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 305]
gi|148028261|gb|EDK86221.1| type III secretion system protein BsaX [Burkholderia mallei
2002721280]
gi|157811254|gb|EDO88424.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 406e]
gi|157934539|gb|EDO90209.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei Pasteur 52237]
gi|160697009|gb|EDP86979.1| type III secretion system protein BsaX [Burkholderia mallei ATCC
10399]
gi|169650372|gb|EDS83065.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei S13]
gi|184215760|gb|EDU12741.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 1655]
gi|217391720|gb|EEC31747.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 576]
gi|225931951|gb|EEH27952.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei Pakistan 9]
gi|234999547|gb|EEP48971.1| EpaQ [Burkholderia pseudomallei MSHR346]
gi|238522376|gb|EEP85821.1| EpaQ [Burkholderia mallei GB8 horse 4]
gi|242136525|gb|EES22928.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 1106b]
gi|243060410|gb|EES42596.1| type III secretion system protein BsaX [Burkholderia mallei
PRL-20]
gi|254213652|gb|EET03037.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 1710a]
gi|261826624|gb|ABM99203.2| type III secretion system protein BsaX [Burkholderia mallei NCTC
10229]
Length = 84
Score = 40.4 bits (93), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 34/51 (66%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLS 82
G+ I Q +TQ+QE TL F K++AVF L++ + + GG++ +F T +LS
Sbjct: 30 GLAIGLFQTVTQLQEQTLPFGLKMLAVFGCLMMLSGWFGGKLLAFATEMLS 80
>gi|296282255|ref|ZP_06860253.1| hypothetical protein CbatJ_01475 [Citromicrobium bathyomarinum
JL354]
Length = 90
Score = 40.4 bits (93), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 5/79 (6%)
Query: 1 MNEADVL-EIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVF 59
M+E VL +A +WT +AP+L +A+ LG++I +QA T + E TLTFVPK+ AV
Sbjct: 1 MDEMSVLLSLADRMLWTTALVAAPILLAALGLGLVIGLIQAATSVNEQTLTFVPKLAAVA 60
Query: 60 ITLIISAPFIGGQISSFVT 78
L++ +G + + VT
Sbjct: 61 FVLVV----LGASMMALVT 75
>gi|107021596|ref|YP_619923.1| flagellar biosynthesis protein FliQ [Burkholderia cenocepacia AU
1054]
gi|116688060|ref|YP_833683.1| flagellar biosynthesis protein FliQ [Burkholderia cenocepacia
HI2424]
gi|161523219|ref|YP_001578231.1| flagellar biosynthesis protein FliQ [Burkholderia multivorans
ATCC 17616]
gi|170731410|ref|YP_001763357.1| flagellar biosynthesis protein FliQ [Burkholderia cenocepacia
MC0-3]
gi|189348924|ref|YP_001944552.1| flagellar biosynthesis protein FliQ [Burkholderia multivorans
ATCC 17616]
gi|221201780|ref|ZP_03574817.1| flagellar biosynthetic protein FliQ [Burkholderia multivorans
CGD2M]
gi|221207715|ref|ZP_03580723.1| flagellar biosynthetic protein FliQ [Burkholderia multivorans
CGD2]
gi|221214541|ref|ZP_03587511.1| flagellar biosynthetic protein FliQ [Burkholderia multivorans
CGD1]
gi|254246637|ref|ZP_04939958.1| Flagellar biosynthesis protein FliQ [Burkholderia cenocepacia
PC184]
gi|105891785|gb|ABF74950.1| flagellar biosynthetic protein FliQ [Burkholderia cenocepacia AU
1054]
gi|116646149|gb|ABK06790.1| flagellar biosynthetic protein FliQ [Burkholderia cenocepacia
HI2424]
gi|124871413|gb|EAY63129.1| Flagellar biosynthesis protein FliQ [Burkholderia cenocepacia
PC184]
gi|160340648|gb|ABX13734.1| flagellar biosynthetic protein FliQ [Burkholderia multivorans
ATCC 17616]
gi|169814652|gb|ACA89235.1| flagellar biosynthetic protein FliQ [Burkholderia cenocepacia
MC0-3]
gi|189332946|dbj|BAG42016.1| flagellar biosynthetic protein [Burkholderia multivorans ATCC
17616]
gi|221165431|gb|EED97907.1| flagellar biosynthetic protein FliQ [Burkholderia multivorans
CGD1]
gi|221172561|gb|EEE05000.1| flagellar biosynthetic protein FliQ [Burkholderia multivorans
CGD2]
gi|221178200|gb|EEE10610.1| flagellar biosynthetic protein FliQ [Burkholderia multivorans
CGD2M]
gi|325525521|gb|EGD03320.1| flagellar biosynthesis protein FliQ [Burkholderia sp. TJI49]
Length = 90
Score = 40.4 bits (93), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 25/31 (80%)
Query: 39 QALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
QA TQI E TL+F+PK++AV TL+I+ P++
Sbjct: 39 QAATQINEATLSFIPKLLAVAATLVIAGPWM 69
>gi|330814979|ref|YP_004358684.1| Flagellar biosynthesis protein FliQ [Burkholderia gladioli BSR3]
gi|327367372|gb|AEA58728.1| Flagellar biosynthesis protein FliQ [Burkholderia gladioli BSR3]
Length = 90
Score = 40.4 bits (93), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 26/31 (83%)
Query: 39 QALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
QA TQI E TL+F+PK++A+ +T++I+ P++
Sbjct: 39 QAATQINESTLSFIPKLLAIVVTMVIAGPWM 69
>gi|27365291|ref|NP_760819.1| flagellar biosynthesis protein FliQ [Vibrio vulnificus CMCP6]
gi|37680654|ref|NP_935263.1| flagellar biosynthesis protein FliQ [Vibrio vulnificus YJ016]
gi|320155675|ref|YP_004188054.1| flagellar biosynthesis protein FliQ [Vibrio vulnificus MO6-24/O]
gi|27361438|gb|AAO10346.1| flagellar biosynthetic protein FliQ [Vibrio vulnificus CMCP6]
gi|37199403|dbj|BAC95234.1| flagellar biosynthesis pathway, component FliQ [Vibrio vulnificus
YJ016]
gi|319930987|gb|ADV85851.1| flagellar biosynthesis protein FliQ [Vibrio vulnificus MO6-24/O]
Length = 89
Score = 40.4 bits (93), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 43/76 (56%)
Query: 8 EIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAP 67
E+ R A+W +L ++ ++ +G+++A QA T I E TL+F+P++I + L++
Sbjct: 8 ELFREALWMVLIMVCAIIIPSLLVGLIVAIFQAATSINEQTLSFLPRLIVTLLALMLFGH 67
Query: 68 FIGGQISSFVTLVLSR 83
++ + + ++ R
Sbjct: 68 WMTQMLMEYFFALVER 83
>gi|238025696|ref|YP_002909927.1| flagellar biosynthesis protein FliQ [Burkholderia glumae BGR1]
gi|237874890|gb|ACR27223.1| Flagellar biosynthesis protein [Burkholderia glumae BGR1]
Length = 90
Score = 40.4 bits (93), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 26/31 (83%)
Query: 39 QALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
QA TQI E TL+F+PK++A+ +T++I+ P++
Sbjct: 39 QAATQINESTLSFIPKLLAIVVTMVIAGPWM 69
>gi|315453523|ref|YP_004073793.1| flagellar biosynthetic protein [Helicobacter felis ATCC 49179]
gi|315132575|emb|CBY83203.1| flagellar biosynthetic protein [Helicobacter felis ATCC 49179]
Length = 88
Score = 40.4 bits (93), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 50/82 (60%)
Query: 3 EADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITL 62
EA ++++A L S PVL + +G+L++ QA TQI E+TL+FVPKI+AV +
Sbjct: 2 EAQLMKLAIETYKITLMISLPVLLVGLVVGLLVSIFQATTQINEMTLSFVPKILAVIAVI 61
Query: 63 IISAPFIGGQISSFVTLVLSRI 84
+I+ P++ + + +++ I
Sbjct: 62 VITMPWMLNMLLDYTSMLFKLI 83
>gi|206561839|ref|YP_002232604.1| flagellar biosynthesis protein FliQ [Burkholderia cenocepacia
J2315]
gi|198037881|emb|CAR53825.1| flagellar biosynthetic protein FliQ [Burkholderia cenocepacia
J2315]
Length = 90
Score = 40.4 bits (93), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 25/31 (80%)
Query: 39 QALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
QA TQI E TL+F+PK++AV TL+I+ P++
Sbjct: 39 QAATQINEATLSFIPKLLAVAATLVIAGPWM 69
>gi|167834871|ref|ZP_02461754.1| flagellar biosynthesis protein FliQ [Burkholderia thailandensis
MSMB43]
Length = 90
Score = 40.4 bits (93), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 32/49 (65%)
Query: 36 AFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSRI 84
+ QA TQI E TL+F+PK++AV T++I+ P++ + ++ L R+
Sbjct: 36 SLFQAATQINEATLSFIPKLLAVAATMVIAGPWMLSTMIDYLRETLLRV 84
>gi|117619170|ref|YP_855915.1| flagellar biosynthetic protein FliQ [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|74055045|gb|AAZ95850.1| FliQ [Aeromonas hydrophila]
gi|117560577|gb|ABK37525.1| flagellar biosynthetic protein FliQ [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 89
Score = 40.0 bits (92), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 45/84 (53%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ +++ R A+W + V+ ++ +G+L+A QA T I E TL+F+P++I
Sbjct: 1 MSPETFIDVFREALWLVTIMVCAVILPSLCVGLLVAIFQAATSINEQTLSFLPRLIVTLF 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
L A + + F L++S+I
Sbjct: 61 ALGAGAHWGLQSLMDFFLLMVSQI 84
>gi|90406808|ref|ZP_01215000.1| flagellar biosynthesis protein [Psychromonas sp. CNPT3]
gi|90312045|gb|EAS40138.1| flagellar biosynthesis protein [Psychromonas sp. CNPT3]
Length = 89
Score = 40.0 bits (92), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 44/78 (56%)
Query: 7 LEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISA 66
+ I R A+WT+L + + ++ +G+++A QA T I E TL+F+P+++ L A
Sbjct: 7 VNIFRQALWTVLLLVSAAIIPSLLVGLVVAVFQAATSINEQTLSFLPRLMMTLTALAFGA 66
Query: 67 PFIGGQISSFVTLVLSRI 84
+ G++ F ++ +I
Sbjct: 67 HWGFGKLMEFFISMIDQI 84
>gi|327394276|dbj|BAK11698.1| flagellar biosynthetic protein FliQ [Pantoea ananatis AJ13355]
Length = 108
Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 30/46 (65%)
Query: 39 QALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSRI 84
QA TQI E TL+F+PKIIAV T II+ P++ + ++ V S +
Sbjct: 58 QAATQINEQTLSFIPKIIAVATTGIIAGPWMLNVLLDYIRTVFSNL 103
>gi|330828810|ref|YP_004391762.1| flagellar biosynthetic protein FliQ [Aeromonas veronii B565]
gi|328803946|gb|AEB49145.1| Flagellar biosynthetic protein FliQ [Aeromonas veronii B565]
Length = 89
Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 48/84 (57%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ +++ R A+W + + V+ ++ +G+++A QA T I E TL+F+P++I +
Sbjct: 1 MSPETFVDVFREALWLVNIMVSAVILPSLAIGLVVAIFQAATSINEQTLSFLPRLIVTLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
L I A + + F L++++I
Sbjct: 61 ALGIGAHWGMQSLMDFFILMVNQI 84
>gi|291617859|ref|YP_003520601.1| FliQ [Pantoea ananatis LMG 20103]
gi|291152889|gb|ADD77473.1| FliQ [Pantoea ananatis LMG 20103]
Length = 108
Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 30/46 (65%)
Query: 39 QALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSRI 84
QA TQI E TL+F+PKIIAV T II+ P++ + ++ V S +
Sbjct: 58 QAATQINEQTLSFIPKIIAVATTGIIAGPWMLNVLLDYIRTVFSNL 103
>gi|88800468|ref|ZP_01116032.1| flagellar biosynthesis protein [Reinekea sp. MED297]
gi|88776798|gb|EAR08009.1| flagellar biosynthesis protein [Reinekea sp. MED297]
Length = 89
Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/84 (20%), Positives = 49/84 (58%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ ++ ++ A++ ++ + ++ ++ +G++++ QA TQI E TL+F+P+++ +
Sbjct: 1 MDAMNIADLFSEALYIVVIIVSIIIVPSLIVGLIVSTFQAATQINEQTLSFLPRLLVTLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
+I + P++ ++ F + I
Sbjct: 61 MMIFAGPYLVNKVVEFANTIYMNI 84
>gi|183598643|ref|ZP_02960136.1| hypothetical protein PROSTU_02047 [Providencia stuartii ATCC
25827]
gi|188020826|gb|EDU58866.1| hypothetical protein PROSTU_02047 [Providencia stuartii ATCC
25827]
Length = 89
Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 28/35 (80%)
Query: 35 IAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
I+ LQA TQ+ E+TL+F+PKI++V +II+ P++
Sbjct: 35 ISLLQAATQVNEMTLSFIPKILSVIAVIIIAGPWM 69
>gi|45440281|ref|NP_991820.1| putative type III secretion apparatus protein [Yersinia pestis
biovar Microtus str. 91001]
gi|51594683|ref|YP_068874.1| type III secretion apparatus protein EscS/SsaS/YscS [Yersinia
pseudotuberculosis IP 32953]
gi|108810001|ref|YP_653917.1| putative type III secretion apparatus protein [Yersinia pestis
Antiqua]
gi|108813556|ref|YP_649323.1| type III secretion apparatus protein [Yersinia pestis Nepal516]
gi|145600946|ref|YP_001165022.1| type III secretion apparatus protein [Yersinia pestis Pestoides
F]
gi|150260680|ref|ZP_01917408.1| putative type III secretion apparatus protein [Yersinia pestis
CA88-4125]
gi|165926783|ref|ZP_02222615.1| type III secretion protein, HrpO family [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165936431|ref|ZP_02224999.1| type III secretion protein, HrpO family [Yersinia pestis biovar
Orientalis str. IP275]
gi|166010452|ref|ZP_02231350.1| type III secretion protein, HrpO family [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166213899|ref|ZP_02239934.1| type III secretion protein, HrpO family [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167418745|ref|ZP_02310498.1| type III secretion protein, HrpO family [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167426120|ref|ZP_02317873.1| type III secretion protein, HrpO family [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|170026114|ref|YP_001722619.1| HrpO family type III secretion protein [Yersinia
pseudotuberculosis YPIII]
gi|186893686|ref|YP_001870798.1| HrpO family type III secretion protein [Yersinia
pseudotuberculosis PB1/+]
gi|218927478|ref|YP_002345353.1| putative type III secretion apparatus protein [Yersinia pestis
CO92]
gi|229836526|ref|ZP_04456692.1| putative type III secretion apparatus protein [Yersinia pestis
Pestoides A]
gi|229840134|ref|ZP_04460293.1| putative type III secretion apparatus protein [Yersinia pestis
biovar Orientalis str. PEXU2]
gi|229842215|ref|ZP_04462370.1| putative type III secretion apparatus protein [Yersinia pestis
biovar Orientalis str. India 195]
gi|229904046|ref|ZP_04519159.1| putative type III secretion apparatus protein [Yersinia pestis
Nepal516]
gi|270488969|ref|ZP_06206043.1| type III secretion protein, HrpO family [Yersinia pestis KIM D27]
gi|45435137|gb|AAS60697.1| putative type III secretion apparatus protein [Yersinia pestis
biovar Microtus str. 91001]
gi|51587965|emb|CAH19568.1| putative type III secretion apparatus protein EscS/SsaS/YscS
[Yersinia pseudotuberculosis IP 32953]
gi|108777204|gb|ABG19723.1| type III secretion apparatus protein [Yersinia pestis Nepal516]
gi|108781914|gb|ABG15972.1| putative type III secretion apparatus protein [Yersinia pestis
Antiqua]
gi|115346089|emb|CAL18957.1| putative type III secretion apparatus protein [Yersinia pestis
CO92]
gi|145212642|gb|ABP42049.1| type III secretion apparatus protein [Yersinia pestis Pestoides
F]
gi|149290088|gb|EDM40165.1| putative type III secretion apparatus protein [Yersinia pestis
CA88-4125]
gi|165915547|gb|EDR34156.1| type III secretion protein, HrpO family [Yersinia pestis biovar
Orientalis str. IP275]
gi|165921406|gb|EDR38630.1| type III secretion protein, HrpO family [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165990542|gb|EDR42843.1| type III secretion protein, HrpO family [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166204874|gb|EDR49354.1| type III secretion protein, HrpO family [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166962739|gb|EDR58760.1| type III secretion protein, HrpO family [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167054831|gb|EDR64633.1| type III secretion protein, HrpO family [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|169752648|gb|ACA70166.1| type III secretion protein, HrpO family [Yersinia
pseudotuberculosis YPIII]
gi|186696712|gb|ACC87341.1| type III secretion protein, HrpO family [Yersinia
pseudotuberculosis PB1/+]
gi|229679816|gb|EEO75919.1| putative type III secretion apparatus protein [Yersinia pestis
Nepal516]
gi|229690525|gb|EEO82579.1| putative type III secretion apparatus protein [Yersinia pestis
biovar Orientalis str. India 195]
gi|229696500|gb|EEO86547.1| putative type III secretion apparatus protein [Yersinia pestis
biovar Orientalis str. PEXU2]
gi|229706210|gb|EEO92218.1| putative type III secretion apparatus protein [Yersinia pestis
Pestoides A]
gi|270337473|gb|EFA48250.1| type III secretion protein, HrpO family [Yersinia pestis KIM D27]
Length = 97
Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 34/45 (75%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSF 76
G++I+ +QALTQIQ+ TL F+ K++AV TL+++ ++G + ++
Sbjct: 40 GLVISLVQALTQIQDQTLQFLIKLLAVSATLLMTYHWMGATLLNY 84
>gi|115350084|ref|YP_771923.1| flagellar biosynthesis protein FliQ [Burkholderia ambifaria AMMD]
gi|170698076|ref|ZP_02889157.1| flagellar biosynthetic protein FliQ [Burkholderia ambifaria
IOP40-10]
gi|171316886|ref|ZP_02906095.1| flagellar biosynthetic protein FliQ [Burkholderia ambifaria
MEX-5]
gi|172059103|ref|YP_001806755.1| flagellar biosynthesis protein FliQ [Burkholderia ambifaria
MC40-6]
gi|115280072|gb|ABI85589.1| flagellar biosynthetic protein FliQ [Burkholderia ambifaria AMMD]
gi|170137037|gb|EDT05284.1| flagellar biosynthetic protein FliQ [Burkholderia ambifaria
IOP40-10]
gi|171097967|gb|EDT42785.1| flagellar biosynthetic protein FliQ [Burkholderia ambifaria
MEX-5]
gi|171991620|gb|ACB62539.1| flagellar biosynthetic protein FliQ [Burkholderia ambifaria
MC40-6]
Length = 90
Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 26/34 (76%)
Query: 36 AFLQALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
+ QA TQI E TL+F+PK++AV TL+I+ P++
Sbjct: 36 SLFQAATQINESTLSFIPKLLAVAATLVIAGPWM 69
>gi|134294169|ref|YP_001117904.1| flagellar biosynthesis protein FliQ [Burkholderia vietnamiensis
G4]
gi|134137326|gb|ABO53069.1| flagellar biosynthetic protein FliQ [Burkholderia vietnamiensis
G4]
Length = 90
Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 26/34 (76%)
Query: 36 AFLQALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
+ QA TQI E TL+F+PK++AV TL+I+ P++
Sbjct: 36 SLFQAATQINESTLSFIPKLLAVAATLVIAGPWM 69
>gi|149188096|ref|ZP_01866391.1| flagellar biosynthesis protein Q [Vibrio shilonii AK1]
gi|148838084|gb|EDL55026.1| flagellar biosynthesis protein Q [Vibrio shilonii AK1]
Length = 89
Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 44/81 (54%)
Query: 8 EIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAP 67
E+ R A+W +L ++ ++ +G+++A QA T I E TL+F+P++I + LI A
Sbjct: 8 ELFRDALWMVLILVCAIVVPSLLVGLVVAIFQAATSINEQTLSFLPRLIVTILALIGFAH 67
Query: 68 FIGGQISSFVTLVLSRIQSSL 88
+ + F ++ R+ L
Sbjct: 68 WGTQMMMEFFYEIIERLPQVL 88
>gi|258514016|ref|YP_003190238.1| flagellar biosynthetic protein FliQ [Desulfotomaculum acetoxidans
DSM 771]
gi|257777721|gb|ACV61615.1| flagellar biosynthetic protein FliQ [Desulfotomaculum acetoxidans
DSM 771]
Length = 89
Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 35/54 (64%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPK 54
M + + +AR A +L + P + + + +G++++ QA+TQIQE TL+FVPK
Sbjct: 1 MTQTFAIHMAREAFIMMLILALPPIGAGLLVGLVVSVFQAVTQIQEQTLSFVPK 54
>gi|146305088|ref|YP_001185553.1| HrpO family type III secretion protein [Pseudomonas mendocina
ymp]
gi|145573289|gb|ABP82821.1| type III secretion protein, HrpO family [Pseudomonas mendocina
ymp]
Length = 87
Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 47/83 (56%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
+ L + + M+ ++ +AP L A+ +G+ + +QAL Q+Q+ TL F K+ AV +TL +
Sbjct: 2 EALALFKQGMFLVVILTAPPLAVAVLVGVTTSLVQALMQMQDQTLPFGLKLAAVGLTLAM 61
Query: 65 SAPFIGGQISSFVTLVLSRIQSS 87
+ +IG ++ F + I S
Sbjct: 62 TGRWIGLELIQFTNMAFDLIARS 84
>gi|170694403|ref|ZP_02885557.1| flagellar biosynthetic protein FliQ [Burkholderia graminis C4D1M]
gi|170140826|gb|EDT09000.1| flagellar biosynthetic protein FliQ [Burkholderia graminis C4D1M]
Length = 83
Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 32/46 (69%)
Query: 39 QALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSRI 84
QA TQI E TL+F+PK++A+ +T++I+ P++ + ++ L+ I
Sbjct: 33 QAATQINESTLSFIPKLLAIAVTMVIAGPWMLTTMLDYLRQTLTNI 78
>gi|209695729|ref|YP_002263659.1| flagellar biosynthesis protein FliQ [Aliivibrio salmonicida
LFI1238]
gi|208009682|emb|CAQ79981.1| polar flagellar assembly protein FliR [Aliivibrio salmonicida
LFI1238]
Length = 89
Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 50/88 (56%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +E+ R A++ +L ++ ++ +G+++A QA T I E TL+F+P++I +
Sbjct: 1 MTPEMAIELFRGALYMVLIMVCAIIIPSLLIGLVVAVFQAATSINEQTLSFLPRLIVTLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+L++ ++ + + +++R+ + L
Sbjct: 61 SLMLFGHWMTRMLMEYFYELIARMPTIL 88
>gi|91200237|emb|CAJ73281.1| similar to flagellar biosynthetic protein FliQ [Candidatus
Kuenenia stuttgartiensis]
Length = 89
Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%)
Query: 22 APVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVL 81
AP+L AM +G+ I QA++ I E TLTF+PK+ AV + P++ ++S+ +L
Sbjct: 22 APLLGVAMIVGLAIGIFQAVSSIHEQTLTFLPKVFAVLGMFLFCLPWMLRIMTSYTVNLL 81
Query: 82 SRI 84
+
Sbjct: 82 GEL 84
>gi|332531134|ref|ZP_08407048.1| flagellar biosynthetic protein FliQ [Hylemonella gracilis ATCC
19624]
gi|332039419|gb|EGI75831.1| flagellar biosynthetic protein FliQ [Hylemonella gracilis ATCC
19624]
Length = 89
Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 43/69 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN VL I + A++ +L SAP+L + + +G+L++ QA+TQI E TL FVPK++
Sbjct: 1 MNAEMVLTIGQEALFILLMVSAPLLGAVLLVGLLVSLFQAITQIHEATLAFVPKLVVALA 60
Query: 61 TLIISAPFI 69
+ P++
Sbjct: 61 VFAWAGPWM 69
>gi|152997436|ref|YP_001342271.1| flagellar biosynthetic protein FliQ [Marinomonas sp. MWYL1]
gi|150838360|gb|ABR72336.1| flagellar biosynthetic protein FliQ [Marinomonas sp. MWYL1]
Length = 89
Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 44/78 (56%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN VL++ + I+ V+ ++ +G++++ QA TQI E TL+F+P++I +
Sbjct: 1 MNPQVVLDLYGQGFYLIVLIVGVVMVPSLIVGLIVSVFQAATQINEQTLSFLPRLIVTIL 60
Query: 61 TLIISAPFIGGQISSFVT 78
++ P+I ++ F T
Sbjct: 61 VIMQLGPWILMKLMDFTT 78
>gi|254442080|ref|ZP_05055556.1| Bacterial export protein, family 3 [Verrucomicrobiae bacterium
DG1235]
gi|198256388|gb|EDY80696.1| Bacterial export protein, family 3 [Verrucomicrobiae bacterium
DG1235]
Length = 71
Score = 39.3 bits (90), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 40/63 (63%)
Query: 22 APVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVL 81
+P+L + + +G++I+ +Q++T IQE TL+F PK+ AV LI+ + ++ + F V
Sbjct: 4 SPILITTIVVGLVISLIQSVTSIQEQTLSFAPKLFAVGGVLIVGSSWLLKTLMGFTIEVY 63
Query: 82 SRI 84
+I
Sbjct: 64 QKI 66
>gi|154173912|ref|YP_001409021.1| flagellar biosynthesis protein FliQ [Campylobacter curvus 525.92]
gi|112804012|gb|EAU01356.1| flagellar biosynthetic protein FliQ [Campylobacter curvus 525.92]
Length = 88
Score = 39.3 bits (90), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%)
Query: 21 SAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLV 80
S P+L S + G++I+ QA TQI E TL+FVPKII V + +I P++ + F T +
Sbjct: 20 SLPMLLSGLIAGLIISIFQATTQINETTLSFVPKIILVVVVIIFLMPWMVSMMVEFTTRM 79
Query: 81 LSRI 84
+ I
Sbjct: 80 IDYI 83
>gi|171057714|ref|YP_001790063.1| flagellar biosynthetic protein FliQ [Leptothrix cholodnii SP-6]
gi|170775159|gb|ACB33298.1| flagellar biosynthetic protein FliQ [Leptothrix cholodnii SP-6]
Length = 89
Score = 39.3 bits (90), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 48/84 (57%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ VL + + +L +AP+L + + +G+ ++ QA TQ+ E TL+FVPK++A
Sbjct: 1 MDATQVLTHGQEGLGILLMVAAPMLLTVLLVGLTVSIFQAATQLHESTLSFVPKMVAAVT 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
+ I+ P++ + ++ VL I
Sbjct: 61 VMAIAGPWMLSTLVEYLQRVLQSI 84
>gi|311992341|gb|ADQ26744.1| flagellar export component [Aeromonas hydrophila]
Length = 88
Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 43/78 (55%)
Query: 7 LEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISA 66
+++ R A+W + V+ ++ +G+L+A QA T I E TL+F+P++I L A
Sbjct: 6 IDVFREALWLVTIMVCAVILPSLCVGLLVAIFQAATSINEQTLSFLPRLIVTLFALGAGA 65
Query: 67 PFIGGQISSFVTLVLSRI 84
+ + F L++S+I
Sbjct: 66 HWGLQSLMDFFLLMVSQI 83
>gi|22124445|ref|NP_667868.1| type III secretion system component [Yersinia pestis KIM 10]
gi|153949767|ref|YP_001402767.1| HrpO family type III secretion protein [Yersinia
pseudotuberculosis IP 31758]
gi|162419851|ref|YP_001608227.1| HrpO family type III secretion protein [Yersinia pestis Angola]
gi|167402190|ref|ZP_02307663.1| type III secretion protein, HrpO family [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|21957232|gb|AAM84119.1|AE013654_8 putative type III secretion system component [Yersinia pestis KIM
10]
gi|152961262|gb|ABS48723.1| type III secretion protein, HrpO family [Yersinia
pseudotuberculosis IP 31758]
gi|162352666|gb|ABX86614.1| type III secretion protein, HrpO family [Yersinia pestis Angola]
gi|167048371|gb|EDR59779.1| type III secretion protein, HrpO family [Yersinia pestis biovar
Antiqua str. UG05-0454]
Length = 93
Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 34/45 (75%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSF 76
G++I+ +QALTQIQ+ TL F+ K++AV TL+++ ++G + ++
Sbjct: 36 GLVISLVQALTQIQDQTLQFLIKLLAVSATLLMTYHWMGATLLNY 80
>gi|71737453|ref|YP_274732.1| type III secretion component [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|71558006|gb|AAZ37217.1| type III secretion component, putative [Pseudomonas syringae pv.
phaseolicola 1448A]
Length = 89
Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + L + A+ T+L SAP L A+ +G+ + LQAL QIQ+ TL V K++AV +
Sbjct: 1 MGQDVFLSLMNKALMTVLLLSAPALVVAIVVGLSVGLLQALPQIQDQTLPQVVKLVAVLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSR 83
++ P + GQ++ VL
Sbjct: 61 VIVFVGPLLAGQVAELGNQVLDN 83
>gi|296135632|ref|YP_003642874.1| flagellar biosynthetic protein FliQ [Thiomonas intermedia K12]
gi|295795754|gb|ADG30544.1| flagellar biosynthetic protein FliQ [Thiomonas intermedia K12]
Length = 91
Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 46/69 (66%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + IA+ A+W + P+L A+ +G++++ +QA TQ+ E+TL+FVPK++A+ +
Sbjct: 1 MTPETITTIAQQALWVTFLVALPLLGVALVVGLVVSLIQAATQLNEMTLSFVPKVLAMGL 60
Query: 61 TLIISAPFI 69
+I+ P++
Sbjct: 61 AGVIAGPWM 69
>gi|86157130|ref|YP_463915.1| type III secretion protein HrpO [Anaeromyxobacter dehalogenans
2CP-C]
gi|85773641|gb|ABC80478.1| type III secretion protein HrpO [Anaeromyxobacter dehalogenans
2CP-C]
Length = 88
Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ A +L + R A+ +L SAP L +A+ +G++ LQA TQ+QE TL VP+++AV +
Sbjct: 1 MDPA-LLHLGREALLLVLVLSAPPLGAALLVGLVTGVLQAATQVQEQTLAVVPRLVAVVV 59
Query: 61 TLIISAPFIGGQISSFVTLVLS 82
L I+AP+IG + F L+
Sbjct: 60 ALAIAAPWIGARAVRFAADCLA 81
>gi|82702485|ref|YP_412051.1| flagellar biosynthesis protein FliQ [Nitrosospira multiformis
ATCC 25196]
gi|82410550|gb|ABB74659.1| flagellar biosynthetic protein FliQ [Nitrosospira multiformis
ATCC 25196]
Length = 89
Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 46/69 (66%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + + AM L SAP+L +A+ G+L++ QA TQI E+TL+F+PK++ +F
Sbjct: 1 MTPESVMTLGQKAMEVTLMVSAPLLLAALATGLLVSIFQAATQINEMTLSFIPKLVVLFA 60
Query: 61 TLIISAPFI 69
L+++ P++
Sbjct: 61 MLVLAGPWM 69
>gi|90411034|ref|ZP_01219048.1| flagellar biosynthesis protein [Photobacterium profundum 3TCK]
gi|90328247|gb|EAS44558.1| flagellar biosynthesis protein [Photobacterium profundum 3TCK]
Length = 89
Score = 39.3 bits (90), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 44/84 (52%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +EI + A++ +L ++ + +G+++A QA T I E TL+F+P++I +
Sbjct: 1 MTPEAFVEIFQEALFMVLIMVCAIVVPGLLIGLVVAVFQAATSINEQTLSFLPRLIVTLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
L+ + G + + ++ RI
Sbjct: 61 ALMFFGHMMTGMLMDYFFRIIDRI 84
>gi|294339801|emb|CAZ88164.1| Flagellar biosynthetic protein FliQ [Thiomonas sp. 3As]
Length = 91
Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 46/69 (66%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + IA+ A+W + P+L A+ +G++++ +QA TQ+ E+TL+FVPK++A+ +
Sbjct: 1 MTPEAITTIAQQALWVTFLVALPLLGVALVVGLVVSLIQAATQLNEMTLSFVPKVLAMGL 60
Query: 61 TLIISAPFI 69
+I+ P++
Sbjct: 61 AGVIAGPWM 69
>gi|87119472|ref|ZP_01075369.1| flagellar biosynthetic protein FliQ [Marinomonas sp. MED121]
gi|86164948|gb|EAQ66216.1| flagellar biosynthetic protein FliQ [Marinomonas sp. MED121]
Length = 97
Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 45/79 (56%)
Query: 6 VLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIIS 65
VL++ A I+ V+ ++ +G++++ QA TQI E TLTF+P++I + +I
Sbjct: 14 VLDLFGQAFLLIVIMVGAVMVPSLIVGLIVSVFQAATQINEQTLTFLPRLIVTILVIIYL 73
Query: 66 APFIGGQISSFVTLVLSRI 84
P++ ++ F T +L I
Sbjct: 74 GPWLLQKLVDFTTQLLIDI 92
>gi|269836608|ref|YP_003318836.1| flagellar biosynthetic protein FliQ [Sphaerobacter thermophilus
DSM 20745]
gi|269785871|gb|ACZ38014.1| flagellar biosynthetic protein FliQ [Sphaerobacter thermophilus
DSM 20745]
Length = 89
Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 58/82 (70%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E VLE+ R ++ T+L AP+L +A+ +G++++ QA+TQ+ E TLTFVPK++ +F+
Sbjct: 1 MSEMLVLELTRDSIATLLLVLAPLLLAALVVGLVVSIFQAVTQVNEATLTFVPKMVVMFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLS 82
L+++ P++ Q+ F +L+
Sbjct: 61 VLLVAGPWMADQLVRFTVRLLT 82
>gi|192359213|ref|YP_001982205.1| flagellar biosynthetic protein FliQ [Cellvibrio japonicus
Ueda107]
gi|190685378|gb|ACE83056.1| flagellar biosynthetic protein FliQ [Cellvibrio japonicus
Ueda107]
Length = 89
Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V++I A W + ++ + +G++++ QA TQI E TL+F+P+++
Sbjct: 1 MTPEVVMDIFADAFWLTILMLTVIVGPGLIVGLVVSMFQAATQINEQTLSFLPRLLVTIA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
TL+++ P++ ++ F+ L +R+ S+
Sbjct: 61 TLMVAGPWL---LTRFMDL-FNRLYSA 83
>gi|145298357|ref|YP_001141198.1| flagellar biosynthetic protein FliQ [Aeromonas salmonicida subsp.
salmonicida A449]
gi|142851129|gb|ABO89450.1| flagellar biosynthetic protein FliQ [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 89
Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ +++ R A+W + V+ ++ +G+++A QA T I E TL+F+P++I
Sbjct: 1 MSPETFVDVFREALWLVTIMVCAVILPSLMIGLVVAIFQAATSINEQTLSFLPRLIVTLF 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
L A + + F L++S+I
Sbjct: 61 ALGAGAHWGLQSLMDFFLLMVSQI 84
>gi|157042764|ref|YP_001449235.1| Spa9 [Shigella dysenteriae Sd197]
gi|187734394|ref|YP_001883217.1| Spa9 [Shigella boydii CDC 3083-94]
gi|304905|gb|AAA72012.1| InvX [Escherichia coli HB101]
gi|32307047|gb|AAP79017.1| Spa9 [Shigella flexneri]
gi|154152387|gb|ABS59871.1| Spa9 [Shigella dysenteriae Sd197]
gi|187426890|gb|ACD06165.1| Spa9 [Shigella boydii CDC 3083-94]
Length = 86
Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 48/84 (57%)
Query: 4 ADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLI 63
+D++ + A++ IL S + A +G+ I LQ +TQ+QE TL F K+I V I+L+
Sbjct: 2 SDIVYMGNKALYLILIFSLWPVGIATVIGLTIGLLQTVTQLQEQTLPFGIKLIGVSISLL 61
Query: 64 ISAPFIGGQISSFVTLVLSRIQSS 87
+ + + G + SF ++ I+S
Sbjct: 62 LLSGWYGEVLLSFCHEIMFLIKSG 85
>gi|51587251|emb|CAE53643.1| putative HrcS [Pseudomonas syringae pv. phaseolicola]
Length = 88
Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 47/83 (56%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
+ L + + M+ ++ +A L A+ +G+L + LQAL QIQ+ TL F K+ AV +TL +
Sbjct: 2 EALALFKQGMFLVVILTASPLGVAVLVGVLTSLLQALMQIQDQTLPFGIKLGAVGLTLAM 61
Query: 65 SAPFIGGQISSFVTLVLSRIQSS 87
+ +IG ++ + + I S
Sbjct: 62 TGRWIGVELIQLINMAFDLIARS 84
>gi|207110683|ref|ZP_03244845.1| flagellar biosynthesis protein FliQ [Helicobacter pylori
HPKX_438_CA4C1]
Length = 74
Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 27/38 (71%)
Query: 39 QALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSF 76
QA TQI E+TL+FVPKI+AV LI++ P++ + +
Sbjct: 33 QATTQINEMTLSFVPKILAVIGVLILTMPWMTNMLLDY 70
>gi|317011552|gb|ADU85299.1| flagellar biosynthesis protein FliQ [Helicobacter pylori
SouthAfrica7]
Length = 88
Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 3 EADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITL 62
E+ ++++A L S PVL + +G+L++ QA TQI E+TL+FVPKI+AV L
Sbjct: 2 ESQLMKLAIETYKITLMISLPVLLVGLVVGLLVSIFQATTQINEMTLSFVPKILAVIGVL 61
Query: 63 IISAPFIGGQISSF 76
I++ P++ + +
Sbjct: 62 ILTMPWMTNMLLDY 75
>gi|119953073|ref|YP_945282.1| flagellar biosynthetic protein FliQ [Borrelia turicatae 91E135]
gi|119861844|gb|AAX17612.1| flagellar biosynthetic protein FliQ [Borrelia turicatae 91E135]
Length = 87
Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 49/66 (74%)
Query: 21 SAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLV 80
SAP+L +A+ +G+LI+ QA+T IQ+ TL+F+PKII + +TL+I P+I ++ F +V
Sbjct: 21 SAPMLITALIVGLLISIFQAVTSIQDQTLSFIPKIIIILLTLVIFGPWILKKLMLFAFMV 80
Query: 81 LSRIQS 86
S+IQ+
Sbjct: 81 FSQIQN 86
>gi|15612379|ref|NP_224032.1| flagellar biosynthesis protein FliQ [Helicobacter pylori J99]
gi|15646028|ref|NP_208210.1| flagellar biosynthesis protein FliQ [Helicobacter pylori 26695]
gi|208435289|ref|YP_002266955.1| flagellar biosynthetic protein [Helicobacter pylori G27]
gi|210135581|ref|YP_002302020.1| flagellar biosynthesis protein FliQ [Helicobacter pylori P12]
gi|217032109|ref|ZP_03437609.1| hypothetical protein HPB128_16g69 [Helicobacter pylori B128]
gi|217034566|ref|ZP_03439975.1| hypothetical protein HP9810_874g23 [Helicobacter pylori 98-10]
gi|254779932|ref|YP_003058039.1| flagellar biosynthesis protein FliQ [Helicobacter pylori B38]
gi|298735621|ref|YP_003728146.1| flagellar biosynthetic protein FliQ [Helicobacter pylori B8]
gi|308183512|ref|YP_003927639.1| flagellar biosynthesis protein FliQ [Helicobacter pylori PeCan4]
gi|60392295|sp|P0A0S3|FLIQ_HELPY RecName: Full=Flagellar biosynthetic protein FliQ
gi|60392296|sp|P0A0S4|FLIQ_HELPJ RecName: Full=Flagellar biosynthetic protein FliQ
gi|2314593|gb|AAD08461.1| flagellar biosynthetic protein (fliQ) [Helicobacter pylori 26695]
gi|2731647|gb|AAB93499.1| membrane protein [Helicobacter pylori]
gi|4155919|gb|AAD06887.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
gi|208433218|gb|ACI28089.1| flagellar biosynthetic protein [Helicobacter pylori G27]
gi|210133549|gb|ACJ08540.1| flagellar biosynthetic protein [Helicobacter pylori P12]
gi|216942986|gb|EEC22469.1| hypothetical protein HP9810_874g23 [Helicobacter pylori 98-10]
gi|216946257|gb|EEC24865.1| hypothetical protein HPB128_16g69 [Helicobacter pylori B128]
gi|254001845|emb|CAX30093.1| Flagellar biosynthesis protein FliQ [Helicobacter pylori B38]
gi|261838694|gb|ACX98460.1| flagellar biosynthetic protein [Helicobacter pylori 51]
gi|261840094|gb|ACX99859.1| flagellar biosynthetic protein [Helicobacter pylori 52]
gi|297380579|gb|ADI35466.1| flagellar biosynthetic protein FliQ [Helicobacter pylori v225d]
gi|298354810|emb|CBI65682.1| flagellar biosynthetic protein FliQ [Helicobacter pylori B8]
gi|307638074|gb|ADN80524.1| Flagellar biosynthesis protein [Helicobacter pylori 908]
gi|308062681|gb|ADO04569.1| flagellar biosynthesis protein FliQ [Helicobacter pylori Cuz20]
gi|308064173|gb|ADO06060.1| flagellar biosynthesis protein FliQ [Helicobacter pylori Sat464]
gi|308065697|gb|ADO07589.1| flagellar biosynthesis protein FliQ [Helicobacter pylori PeCan4]
gi|315585805|gb|ADU40186.1| flagellar biosynthetic protein FliQ [Helicobacter pylori 35A]
gi|317010212|gb|ADU80792.1| flagellar biosynthesis protein FliQ [Helicobacter pylori India7]
gi|317013185|gb|ADU83793.1| flagellar biosynthesis protein FliQ [Helicobacter pylori
Lithuania75]
gi|317014790|gb|ADU82226.1| flagellar biosynthesis protein FliQ [Helicobacter pylori
Gambia94/24]
gi|317178125|dbj|BAJ55914.1| flagellar biosynthesis protein FliQ [Helicobacter pylori F16]
gi|317179597|dbj|BAJ57385.1| flagellar biosynthesis protein FliQ [Helicobacter pylori F30]
gi|317181102|dbj|BAJ58888.1| flagellar biosynthesis protein FliQ [Helicobacter pylori F32]
gi|317182624|dbj|BAJ60408.1| flagellar biosynthesis protein FliQ [Helicobacter pylori F57]
gi|325996677|gb|ADZ52082.1| Flagellar biosynthesis protein [Helicobacter pylori 2018]
gi|325998268|gb|ADZ50476.1| Flagellar biosynthesis protein [Helicobacter pylori 2017]
gi|332674185|gb|AEE71002.1| flagellar biosynthetic protein FliQ [Helicobacter pylori 83]
Length = 88
Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 47/74 (63%)
Query: 3 EADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITL 62
E+ ++++A L S PVL + + +G+L++ QA TQI E+TL+FVPKI+AV L
Sbjct: 2 ESQLMKLAIETYKITLMISLPVLLAGLVVGLLVSIFQATTQINEMTLSFVPKILAVIGVL 61
Query: 63 IISAPFIGGQISSF 76
I++ P++ + +
Sbjct: 62 ILTMPWMTNMLLDY 75
>gi|108563770|ref|YP_628086.1| flagellar biosynthesis protein FliQ [Helicobacter pylori HPAG1]
gi|107837543|gb|ABF85412.1| flagellar biosynthetic protein [Helicobacter pylori HPAG1]
Length = 88
Score = 38.9 bits (89), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 47/74 (63%)
Query: 3 EADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITL 62
E+ ++++A L S PVL + + +G+L++ QA TQI E+TL+FVPKI+AV L
Sbjct: 2 ESQLMKLAIETYKITLMISLPVLLAGLVVGLLVSIFQATTQINEMTLSFVPKILAVIGVL 61
Query: 63 IISAPFIGGQISSF 76
I++ P++ + +
Sbjct: 62 ILTMPWMTNMLLDY 75
>gi|78485086|ref|YP_391011.1| flagellar biosynthetic protein FliQ [Thiomicrospira crunogena
XCL-2]
gi|78363372|gb|ABB41337.1| flagellar biosynthetic protein FliQ [Thiomicrospira crunogena
XCL-2]
Length = 89
Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 31/46 (67%)
Query: 31 LGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSF 76
+G+L+ QA TQI E+TL+F+PK+ V L+++ P++ + SF
Sbjct: 31 VGLLVGMFQAATQINEMTLSFIPKVAIVGFVLVLAGPWMLTTLVSF 76
>gi|238752884|ref|ZP_04614349.1| Lateral flagellar export/assembly protein (FliQ-like) [Yersinia
rohdei ATCC 43380]
gi|238708923|gb|EEQ01176.1| Lateral flagellar export/assembly protein (FliQ-like) [Yersinia
rohdei ATCC 43380]
Length = 90
Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 1 MNEADVL-EIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVF 59
M AD+ +I A + +L S + ++ G+L++ QA TQI E TL+F+P+++
Sbjct: 1 MMTADIAGDIIAAGLHLVLIISVVAIIPSLLTGLLVSIFQATTQINEQTLSFLPRLVMTM 60
Query: 60 ITLIISAPFIGGQISSF 76
+ LI + ++ ++S F
Sbjct: 61 LVLIFAGKWMLTKLSDF 77
>gi|94500291|ref|ZP_01306824.1| flagellar biosynthesis protein [Oceanobacter sp. RED65]
gi|94427590|gb|EAT12567.1| flagellar biosynthesis protein [Oceanobacter sp. RED65]
Length = 89
Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 38/62 (61%)
Query: 8 EIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAP 67
+ R A++ ++ + +L + +G+++A QA TQI E TL+F+P+++ + ++ P
Sbjct: 8 DFLREALFVVILIVSAILVPGLLVGLIVATFQAATQINEQTLSFLPRLVVTLLCVLFFGP 67
Query: 68 FI 69
+I
Sbjct: 68 WI 69
>gi|15606961|ref|NP_214343.1| flagellar biosynthesis protein FliQ [Aquifex aeolicus VF5]
gi|6225368|sp|O67774|FLIQ_AQUAE RecName: Full=Flagellar biosynthetic protein FliQ
gi|2984201|gb|AAC07731.1| flagellar biosynthesis protein FliQ [Aquifex aeolicus VF5]
Length = 89
Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 36/58 (62%)
Query: 27 SAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSRI 84
S +G++++ QA TQIQE+TL+++PK+I F+ + + ++ ++ F + + I
Sbjct: 27 STFVVGLVVSIFQAATQIQEMTLSYIPKVITAFLVIFLLGGWMMRKLVDFAVEIFANI 84
>gi|167467561|ref|ZP_02332265.1| type III secretion system protein [Yersinia pestis FV-1]
Length = 333
Score = 38.5 bits (88), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 34/45 (75%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSF 76
G++I+ +QALTQIQ+ TL F+ K++AV TL+++ ++G + ++
Sbjct: 276 GLVISLVQALTQIQDQTLQFLIKLLAVSATLLMTYHWMGATLLNY 320
>gi|188528184|ref|YP_001910871.1| flagellar biosynthesis protein FliQ [Helicobacter pylori Shi470]
gi|308185179|ref|YP_003929312.1| flagellar biosynthesis protein FliQ [Helicobacter pylori SJM180]
gi|188144424|gb|ACD48841.1| flagellar biosynthesis protein FliQ [Helicobacter pylori Shi470]
gi|308061099|gb|ADO02995.1| flagellar biosynthesis protein FliQ [Helicobacter pylori SJM180]
Length = 83
Score = 38.5 bits (88), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 27/38 (71%)
Query: 39 QALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSF 76
QA TQI E+TL+FVPKI+AV LI++ P++ + +
Sbjct: 33 QATTQINEMTLSFVPKILAVIGVLILTMPWMTNMLLDY 70
>gi|285018284|ref|YP_003375995.1| xanthomonas secretion apparatus protein [Xanthomonas albilineans
GPE PC73]
gi|283473502|emb|CBA16005.1| probable xanthomonas secretion apparatus protein [Xanthomonas
albilineans]
Length = 88
Score = 38.5 bits (88), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 21 SAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
SAP + +A +GI + Q +TQ+QE TL F K+IAV L++ P++
Sbjct: 19 SAPAIITATIVGIAMGLFQTVTQLQEQTLPFGVKLIAVLACLLLLEPWM 67
>gi|109946731|ref|YP_663959.1| flagellar biosynthesis protein FliQ [Helicobacter acinonychis
str. Sheeba]
gi|109713952|emb|CAJ98960.1| flagellar biosynthetic protein [Helicobacter acinonychis str.
Sheeba]
Length = 88
Score = 38.5 bits (88), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 27/38 (71%)
Query: 39 QALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSF 76
QA TQI E+TL+FVPKI+AV LI++ P++ + +
Sbjct: 38 QATTQINEMTLSFVPKILAVIGVLILTMPWMTNMLLDY 75
>gi|262276384|ref|ZP_06054193.1| flagellar biosynthesis protein FliQ [Grimontia hollisae CIP
101886]
gi|262220192|gb|EEY71508.1| flagellar biosynthesis protein FliQ [Grimontia hollisae CIP
101886]
Length = 89
Score = 38.5 bits (88), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 36/57 (63%)
Query: 8 EIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
E+ + A++ IL ++ + +G+L+A QA T I E TL+F+P++IA + L++
Sbjct: 8 ELFQDALYLILIMVCAIIIPGLIVGLLVAIFQAATSINEQTLSFLPRLIATLVALMV 64
>gi|13449101|ref|NP_085317.1| Type III secretion protein [Shigella flexneri 5a]
gi|31983792|ref|NP_858287.1| Spa9, component of the Mxi-Spa secretion machinery [Shigella
flexneri 2a str. 301]
gi|157042766|ref|YP_001449233.1| Spa9 [Shigella sonnei Ss046]
gi|60415915|sp|P0A1M4|SPAQ_SHIFL RecName: Full=Surface presentation of antigens protein SpaQ;
AltName: Full=Protein spa9
gi|60415916|sp|P0A1M5|SPAQ_SHISO RecName: Full=Surface presentation of antigens protein SpaQ;
AltName: Full=Protein spa9
gi|13310649|gb|AAK18473.1|AF348706_162 Type III secretion protein [Shigella flexneri 5a]
gi|303894|dbj|BAA02830.1| spa9 [Shigella flexneri]
gi|12329098|emb|CAC05829.1| Spa9, component of the Mxi-Spa secretion machinery [Shigella
flexneri]
gi|18462784|gb|AAL72556.1| Spa9, component of the Mxi-Spa secretion machinery [Shigella
flexneri 2a str. 301]
gi|154152389|gb|ABS59873.1| Spa9, component of the Mxi-Spa secretion machinery [Shigella
sonnei Ss046]
gi|281603909|gb|ADA76892.1| Spa9, component of the Mxi-Spa secretion machinery [Shigella
flexneri 2002017]
Length = 86
Score = 38.5 bits (88), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 48/84 (57%)
Query: 4 ADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLI 63
+D++ + A++ IL S + A +G+ I LQ +TQ+QE TL F K+I V I+L+
Sbjct: 2 SDIVYMGNKALYLILIFSLWPVGIATVIGLSIGLLQTVTQLQEQTLPFGIKLIGVSISLL 61
Query: 64 ISAPFIGGQISSFVTLVLSRIQSS 87
+ + + G + SF ++ I+S
Sbjct: 62 LLSGWYGEVLLSFCHEIMFLIKSG 85
>gi|23099027|ref|NP_692493.1| flagellar biosynthesis protein FliQ [Oceanobacillus iheyensis
HTE831]
gi|22777255|dbj|BAC13528.1| flagellar protein required for flagellar formation
[Oceanobacillus iheyensis HTE831]
Length = 89
Score = 38.5 bits (88), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 39 QALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
QA TQIQE TL F+PKIIAV + L+ P++
Sbjct: 39 QATTQIQEQTLAFIPKIIAVLVGLVFFGPWM 69
>gi|258621115|ref|ZP_05716149.1| flagellar biosynthesis protein [Vibrio mimicus VM573]
gi|258626188|ref|ZP_05721036.1| flagellar biosynthesis protein [Vibrio mimicus VM603]
gi|261209858|ref|ZP_05924159.1| flagellar biosynthesis protein FliQ [Vibrio sp. RC341]
gi|262170891|ref|ZP_06038569.1| flagellar biosynthesis protein FliQ [Vibrio mimicus MB-451]
gi|258581543|gb|EEW06444.1| flagellar biosynthesis protein [Vibrio mimicus VM603]
gi|258586503|gb|EEW11218.1| flagellar biosynthesis protein [Vibrio mimicus VM573]
gi|260841044|gb|EEX67569.1| flagellar biosynthesis protein FliQ [Vibrio sp. RC341]
gi|261891967|gb|EEY37953.1| flagellar biosynthesis protein FliQ [Vibrio mimicus MB-451]
Length = 89
Score = 38.5 bits (88), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 44/81 (54%)
Query: 8 EIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAP 67
E+ + ++W +L ++ ++ +G+++A QA T I E TL+F+P++I + L+
Sbjct: 8 ELFKESLWLVLIMVCAIIIPSLLIGLVVAIFQAATSINEQTLSFLPRLIITLLALMFFGH 67
Query: 68 FIGGQISSFVTLVLSRIQSSL 88
++ + F ++ R+ L
Sbjct: 68 WMTQMLMDFFYSMIERLPQVL 88
>gi|207091751|ref|ZP_03239538.1| flagellar biosynthesis protein FliQ [Helicobacter pylori
HPKX_438_AG0C1]
Length = 83
Score = 38.5 bits (88), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 27/38 (71%)
Query: 39 QALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSF 76
QA TQI E+TL+FVPKI+AV LI++ P++ + +
Sbjct: 33 QATTQINEMTLSFVPKILAVIGVLILTMPWMTNMLLDY 70
>gi|163800127|ref|ZP_02194028.1| isopentenyl pyrophosphate isomerase [Vibrio sp. AND4]
gi|159175570|gb|EDP60364.1| isopentenyl pyrophosphate isomerase [Vibrio sp. AND4]
Length = 89
Score = 38.1 bits (87), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 40/72 (55%)
Query: 13 AMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQ 72
A+W I+S A ++ + +G+ IA QA TQI E TL+F+P+++ + +I + ++ +
Sbjct: 13 AVWLIISMVAVLVVPGLIVGLCIAVFQAATQINEQTLSFLPRLLVTLLMVIFAGHWMLRK 72
Query: 73 ISSFVTLVLSRI 84
I + I
Sbjct: 73 IMELFDFLFHNI 84
>gi|170738278|ref|YP_001779538.1| HrpO family type III secretion protein [Burkholderia cenocepacia
MC0-3]
gi|169820466|gb|ACA95048.1| type III secretion protein, HrpO family [Burkholderia cenocepacia
MC0-3]
Length = 87
Score = 38.1 bits (87), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 45/82 (54%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN ++ + + L S P + + G+++AFLQA+T +Q+ T++ K+ AV
Sbjct: 1 MNTDTLIGLTSQGLLLCLYISLPAIIVSALSGLIVAFLQAITSLQDQTISHSVKLFAVIG 60
Query: 61 TLIISAPFIGGQISSFVTLVLS 82
TL+++A + G I F +LS
Sbjct: 61 TLLLTAGWGGTTILRFALRLLS 82
>gi|262404468|ref|ZP_06081023.1| flagellar biosynthesis protein FliQ [Vibrio sp. RC586]
gi|262349500|gb|EEY98638.1| flagellar biosynthesis protein FliQ [Vibrio sp. RC586]
Length = 89
Score = 38.1 bits (87), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 44/81 (54%)
Query: 8 EIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAP 67
E+ + ++W +L ++ ++ +G+++A QA T I E TL+F+P++I + L+
Sbjct: 8 ELFKDSLWLVLIMVCAIIIPSLLIGLVVAIFQAATSINEQTLSFLPRLIITLLALMFFGH 67
Query: 68 FIGGQISSFVTLVLSRIQSSL 88
++ + F ++ R+ L
Sbjct: 68 WMTQMLMDFFYSMIERLPQVL 88
>gi|332162919|ref|YP_004299496.1| Lateral flagellar export/assembly protein [Yersinia
enterocolitica subsp. palearctica 105.5R(r)]
gi|325667149|gb|ADZ43793.1| Lateral flagellar export/assembly protein [Yersinia
enterocolitica subsp. palearctica 105.5R(r)]
gi|330862336|emb|CBX72496.1| flagellar biosynthetic protein fliQ [Yersinia enterocolitica
W22703]
Length = 90
Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 40/69 (57%)
Query: 8 EIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAP 67
+I A + +L S + ++ G+L++ QA TQI E TL+F+P+++ + LI +
Sbjct: 9 DIIAAGLHLVLIISVVAIIPSLLTGLLVSIFQATTQINEQTLSFLPRLVMTMLVLIFAGK 68
Query: 68 FIGGQISSF 76
++ ++S F
Sbjct: 69 WMMTKLSDF 77
>gi|254456846|ref|ZP_05070274.1| flagellar biosynthetic protein FliQ [Campylobacterales bacterium
GD 1]
gi|207085638|gb|EDZ62922.1| flagellar biosynthetic protein FliQ [Campylobacterales bacterium
GD 1]
Length = 88
Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 38/56 (67%)
Query: 27 SAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLS 82
+ M +G+ ++ QA TQI E+TL+F+PKII V I +I++ P++ ++ F T + +
Sbjct: 26 TGMLVGLAVSIFQATTQINEMTLSFIPKIIGVVIVIILTMPWMLNSMTDFATNIFN 81
>gi|152985438|ref|YP_001349234.1| flagellar biosynthesis protein FliQ [Pseudomonas aeruginosa PA7]
gi|150960596|gb|ABR82621.1| flagellar biosynthetic protein FliQ [Pseudomonas aeruginosa PA7]
Length = 89
Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 48/78 (61%)
Query: 7 LEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISA 66
L++ R A+W A ++ ++ +G+++A QA TQI E TL+F+P+++ + +TLI+
Sbjct: 7 LDLFREALWLTAMIVAVLVVPSLLVGLVVAMFQAATQINEQTLSFLPRLLVILLTLIVLG 66
Query: 67 PFIGGQISSFVTLVLSRI 84
P++ Q+ + ++ I
Sbjct: 67 PWLLRQLMEYTQALIGNI 84
>gi|59712448|ref|YP_205224.1| flagellar biosynthesis protein FliQ [Vibrio fischeri ES114]
gi|197336221|ref|YP_002156667.1| flagellar biosynthetic protein FliQ [Vibrio fischeri MJ11]
gi|59480549|gb|AAW86336.1| flagellar biosynthesis protein FliQ [Vibrio fischeri ES114]
gi|197317711|gb|ACH67158.1| flagellar biosynthetic protein FliQ [Vibrio fischeri MJ11]
Length = 89
Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 49/88 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +++ R A++ +L ++ ++ +G+++A QA T I E TL+F+P++I +
Sbjct: 1 MTPEMAIDLFRGALYMVLIMVCAIIIPSLLIGLVVAVFQAATSINEQTLSFLPRLIVTLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L++ ++ + + +++R+ + L
Sbjct: 61 ALMLFGHWMTRMLMEYFYELIARMPTVL 88
>gi|332284031|ref|YP_004415942.1| flagellar biosynthetic protein FliQ [Pusillimonas sp. T7-7]
gi|330427984|gb|AEC19318.1| flagellar biosynthetic protein FliQ [Pusillimonas sp. T7-7]
Length = 89
Score = 38.1 bits (87), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + AM L + P+L + +G++I+ QA TQI E+TL+F+PK++AV
Sbjct: 1 MTSETVMSMTYLAMKVALIMAGPLLLVTLVVGLVISIFQAATQINEMTLSFIPKLLAVGA 60
Query: 61 TLIISAPFI 69
L++ P++
Sbjct: 61 ALVLLGPWL 69
>gi|325981180|ref|YP_004293582.1| flagellar biosynthetic protein FliQ [Nitrosomonas sp. AL212]
gi|325530699|gb|ADZ25420.1| flagellar biosynthetic protein FliQ [Nitrosomonas sp. AL212]
Length = 90
Score = 38.1 bits (87), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 28/35 (80%)
Query: 35 IAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
++ QA TQI E+TL+F+PK++ +F+ ++++ P++
Sbjct: 35 VSIFQAATQINEMTLSFIPKLLVMFLVMVLAGPWM 69
>gi|171316781|ref|ZP_02905992.1| type III secretion protein, HrpO family [Burkholderia ambifaria
MEX-5]
gi|171098039|gb|EDT42855.1| type III secretion protein, HrpO family [Burkholderia ambifaria
MEX-5]
Length = 87
Score = 38.1 bits (87), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%)
Query: 21 SAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAP 67
S P++ A +G+ +FLQA+T IQ+ TL+ K+IA + ++I+AP
Sbjct: 21 SLPIVAVAALVGLATSFLQAVTSIQDQTLSHAVKLIAATVAVMITAP 67
>gi|54308126|ref|YP_129146.1| flagellar biosynthesis protein FliQ [Photobacterium profundum
SS9]
gi|46912552|emb|CAG19344.1| Putative polar flagellar assembly protein, FliQ [Photobacterium
profundum SS9]
Length = 89
Score = 38.1 bits (87), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 42/81 (51%)
Query: 8 EIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAP 67
EI + A+ +L ++ + +G+++A QA T I E TL+F+P++I + L+
Sbjct: 8 EIFQEALLMVLIMVCAIVVPGLLIGLVVAVFQAATSINEQTLSFLPRLIVTLLALMFFGH 67
Query: 68 FIGGQISSFVTLVLSRIQSSL 88
+ G + + ++ RI L
Sbjct: 68 MMTGMLMDYFFRIIDRIPQLL 88
>gi|153949888|ref|YP_001399617.1| flagellar biosynthetic protein FliQ [Yersinia pseudotuberculosis
IP 31758]
gi|152961383|gb|ABS48844.1| flagellar biosynthetic protein FliQ [Yersinia pseudotuberculosis
IP 31758]
Length = 90
Score = 38.1 bits (87), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 33/49 (67%)
Query: 28 AMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSF 76
++ +G+L++ QA TQI E TL+F+P+++ + LI + ++ ++S F
Sbjct: 29 SLLIGLLVSIFQATTQINEQTLSFLPRLVMTMLVLIFAGKWMMTKLSDF 77
>gi|187478199|ref|YP_786223.1| flagellar biosynthetic protein FliQ [Bordetella avium 197N]
gi|115422785|emb|CAJ49313.1| flagellar biosynthetic protein FliQ [Bordetella avium 197N]
Length = 89
Score = 37.7 bits (86), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 50/84 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ +A AM L + P+L + +G++I+ QA TQI E+TL+F+PK++A+
Sbjct: 1 MTAEAVMTMAYQAMKIALVLAGPLLLVTLVVGLVISVFQAATQINEMTLSFIPKLLAMCG 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
L++ P++ + ++ ++S I
Sbjct: 61 VLVLLGPWLIELLVDYIRQLISNI 84
>gi|254491665|ref|ZP_05104844.1| Bacterial export protein, family 3 [Methylophaga thiooxidans
DMS010]
gi|224463143|gb|EEF79413.1| Bacterial export protein, family 3 [Methylophaga thiooxydans
DMS010]
Length = 80
Score = 37.7 bits (86), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 34/55 (61%)
Query: 22 APVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSF 76
A +L A+ +G++++ QA T I E TLTF+PK+ + LI + P++ + SF
Sbjct: 13 AMILLPALGIGLIVSMFQAATSINEQTLTFIPKLFITILVLIFAGPWMLSMLLSF 67
>gi|217077268|ref|YP_002334986.1| flagellar biosynthetic protein FliQ [Thermosipho africanus
TCF52B]
gi|217037123|gb|ACJ75645.1| flagellar biosynthetic protein FliQ [Thermosipho africanus
TCF52B]
Length = 88
Score = 37.7 bits (86), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 7 LEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKII 56
L++ + T+L+ P L ++ +G+LI+ QA TQI E TLTF P+II
Sbjct: 7 LDVFGLGIKTLLTVILPPLLISLIVGLLISIFQAATQINEQTLTFAPRII 56
>gi|220903657|ref|YP_002478969.1| flagellar biosynthetic protein FliQ [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
gi|219867956|gb|ACL48291.1| flagellar biosynthetic protein FliQ [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
Length = 89
Score = 37.7 bits (86), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 37/54 (68%)
Query: 6 VLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVF 59
V+ R A+ L + P+L + +G++++ +QA TQIQE+TLTF+PKI+ +F
Sbjct: 6 VIGFGRQAIELCLMMALPMLGVGLGVGVIVSVIQAATQIQEMTLTFIPKIVCMF 59
>gi|89899372|ref|YP_521843.1| flagellar biosynthetic protein FliQ [Rhodoferax ferrireducens
T118]
gi|89344109|gb|ABD68312.1| flagellar biosynthetic protein FliQ [Rhodoferax ferrireducens
T118]
Length = 85
Score = 37.7 bits (86), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 41/64 (64%)
Query: 6 VLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIIS 65
VL + + A+ +L SAPVL + +G+L++ QA+TQI E TL FVPK++A ++
Sbjct: 2 VLTMGQEALIMLLMVSAPVLGVVLVVGLLVSLFQAVTQINEATLAFVPKLVAAMAVFALA 61
Query: 66 APFI 69
P++
Sbjct: 62 GPWM 65
>gi|229524124|ref|ZP_04413529.1| flagellar biosynthesis protein FliQ [Vibrio cholerae bv. albensis
VL426]
gi|229337705|gb|EEO02722.1| flagellar biosynthesis protein FliQ [Vibrio cholerae bv. albensis
VL426]
Length = 89
Score = 37.7 bits (86), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 44/81 (54%)
Query: 8 EIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAP 67
E+ + ++W +L ++ ++ +G+++A QA T I E TL+F+P++I + L+
Sbjct: 8 ELFKESLWLVLIMVCAIIIPSLLVGLVVAIFQAATSINEQTLSFLPRLIITLLALMFFGH 67
Query: 68 FIGGQISSFVTLVLSRIQSSL 88
++ + F ++ R+ L
Sbjct: 68 WMTQMLMDFFYSMVERLPQVL 88
>gi|116514992|ref|YP_802621.1| hypothetical protein BCc_049 [Buchnera aphidicola str. Cc (Cinara
cedri)]
gi|116256846|gb|ABJ90528.1| type III protein export, membrane component [Buchnera aphidicola
str. Cc (Cinara cedri)]
Length = 88
Score = 37.7 bits (86), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 48/69 (69%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN+ ++ + + ++ + S P L + +GILI+FLQ++TQI E TL+F+PKI+++F+
Sbjct: 1 MNQEFLITLFQDSIKFVFLISVPCLIPILLIGILISFLQSITQIHEQTLSFIPKILSIFL 60
Query: 61 TLIISAPFI 69
+LI P++
Sbjct: 61 SLIFFGPWM 69
>gi|74101641|gb|AAZ99731.1| FliQL [Aeromonas hydrophila]
Length = 93
Score = 37.7 bits (86), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 34/48 (70%)
Query: 28 AMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISS 75
++ +G++++ QA TQIQE TL+F+P+ + +TLI + ++ QI++
Sbjct: 32 SLIVGLVVSVFQAATQIQEQTLSFLPRFLVTLMTLIFTGNWLLSQITT 79
>gi|89072285|ref|ZP_01158864.1| flagellar biosynthetic protein [Photobacterium sp. SKA34]
gi|330447936|ref|ZP_08311584.1| flagellar biosynthetic protein FliQ [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
gi|89051817|gb|EAR57269.1| flagellar biosynthetic protein [Photobacterium sp. SKA34]
gi|328492127|dbj|GAA06081.1| flagellar biosynthetic protein FliQ [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
Length = 89
Score = 37.4 bits (85), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 36/57 (63%)
Query: 13 AMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
A+W I++ ++ + +G++IA QA TQI E TL+F+P++I + +I + ++
Sbjct: 13 AVWIIINMVMVLVIPGLLVGLVIAVFQAATQINEQTLSFLPRLIMTLLMVIFAGHWM 69
>gi|238755992|ref|ZP_04617317.1| Surface presentation of antigens protein spaQ [Yersinia ruckeri
ATCC 29473]
gi|238705781|gb|EEP98173.1| Surface presentation of antigens protein spaQ [Yersinia ruckeri
ATCC 29473]
Length = 87
Score = 37.4 bits (85), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 11 RAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIG 70
+A + ++ S+ PVL A +G+ + +Q +TQ+QE TL F K++AVF +L + + ++
Sbjct: 10 KAMLLIVVLSAIPVLV-ATVVGLFVGLIQTVTQLQEQTLPFGLKLLAVFGSLFMISGWLS 68
Query: 71 GQISSFVTLVLS 82
++ S+ VLS
Sbjct: 69 DKVMSYAMEVLS 80
>gi|167915627|ref|ZP_02502718.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 112]
Length = 87
Score = 37.4 bits (85), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 36/61 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M D++ + M L S PV+ A G+ I+FLQA+T +QE ++++ K++AV +
Sbjct: 1 MEIDDLIRLTSQGMMLCLYISLPVVLVAAASGLAISFLQAITSLQEQSISYGVKLVAVTV 60
Query: 61 T 61
T
Sbjct: 61 T 61
>gi|145297438|ref|YP_001140279.1| lateral flagellar biosynthetic protein, LfiQ [Aeromonas
salmonicida subsp. salmonicida A449]
gi|142850210|gb|ABO88531.1| lateral flagellar biosynthetic protein, LfiQ [Aeromonas
salmonicida subsp. salmonicida A449]
Length = 89
Score = 37.4 bits (85), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 34/48 (70%)
Query: 28 AMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISS 75
++ +G++++ QA TQIQE TL+F+P+ + +TLI + ++ QI++
Sbjct: 28 SLIVGLVVSVFQAATQIQEQTLSFLPRFLVTLMTLIFTGNWLLSQITT 75
>gi|90577374|ref|ZP_01233185.1| flagellar biosynthetic protein [Vibrio angustum S14]
gi|90440460|gb|EAS65640.1| flagellar biosynthetic protein [Vibrio angustum S14]
Length = 89
Score = 37.4 bits (85), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 36/57 (63%)
Query: 13 AMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
A+W I++ ++ + +G++IA QA TQI E TL+F+P++I + +I + ++
Sbjct: 13 AVWLIINMVMVLVIPGLLVGLVIAVFQAATQINEQTLSFLPRLIMTLLMVIFAGHWM 69
>gi|115360605|ref|YP_777742.1| HrpO family type III secretion protein [Burkholderia ambifaria
AMMD]
gi|115285933|gb|ABI91408.1| type III secretion protein, HrpO family [Burkholderia ambifaria
AMMD]
Length = 87
Score = 37.4 bits (85), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 3 EADVL-EIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFIT 61
E D L I + LS S PV+ A G+ I+F+QA+T +Q+ ++++ K++AV T
Sbjct: 2 ETDTLVRITSQGLLLCLSVSMPVVAVAALSGLAISFVQAITSMQDQSISYAVKLVAVVAT 61
Query: 62 LIISAPFIGGQISSFVTLVLS 82
++I+ + I F +++
Sbjct: 62 VLITGAWGAAAILRFANQIIT 82
>gi|307131231|ref|YP_003883247.1| type III secretion inner membrane protein [Dickeya dadantii 3937]
gi|306528760|gb|ADM98690.1| type III secretion inner membrane protein [Dickeya dadantii 3937]
Length = 86
Score = 37.4 bits (85), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 50/83 (60%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
+ L + R AM ++ SAP L A+ +G+LI+ LQA+ Q+Q+ TL F K++AV + L +
Sbjct: 2 ETLNLFRQAMVLVVMLSAPPLLVAVVVGVLISLLQAVMQLQDQTLPFAVKLVAVGLVLAM 61
Query: 65 SAPFIGGQISSFVTLVLSRIQSS 87
+ +IG ++ L + I+ +
Sbjct: 62 TGRWIGVELIQLAMLAFNMIEQT 84
>gi|163801856|ref|ZP_02195753.1| flagellar biosynthesis protein Q [Vibrio sp. AND4]
gi|159174364|gb|EDP59168.1| flagellar biosynthesis protein Q [Vibrio sp. AND4]
Length = 89
Score = 37.4 bits (85), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 30/47 (63%)
Query: 8 EIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPK 54
E+ R A+W +L ++ ++ +G+++A QA T I E TL+F+P+
Sbjct: 8 ELFRDALWMVLIMVCAIIIPSLLIGLVVAIFQAATSINEQTLSFLPR 54
>gi|284007674|emb|CBA73395.1| type III secretion sytem SpaQ [Arsenophonus nasoniae]
Length = 61
Score = 37.4 bits (85), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 26/34 (76%)
Query: 31 LGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
+G++I LQ +TQIQE TL F K++AVFI L++
Sbjct: 28 IGLIIGLLQTVTQIQEQTLPFGLKLVAVFICLLM 61
>gi|103488402|ref|YP_617963.1| flagellar biosynthetic protein FliQ [Sphingopyxis alaskensis
RB2256]
gi|98978479|gb|ABF54630.1| flagellar biosynthetic protein FliQ [Sphingopyxis alaskensis
RB2256]
Length = 89
Score = 37.4 bits (85), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
Query: 9 IARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPF 68
+A+ ++W + +SAP+L + +G+L+ +QA T I E TLTFVPK+I I L I
Sbjct: 9 MAQQSLWILALASAPLLLPVLIVGVLLGMVQAATSINEQTLTFVPKLIVAAICLAI---- 64
Query: 69 IGGQI 73
GG I
Sbjct: 65 FGGSI 69
>gi|88858097|ref|ZP_01132739.1| flagellar biosynthesis [Pseudoalteromonas tunicata D2]
gi|88819714|gb|EAR29527.1| flagellar biosynthesis [Pseudoalteromonas tunicata D2]
Length = 89
Score = 37.4 bits (85), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 9 IARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPF 68
I A++ ++ A ++ ++ +G++++ QA T I E TL+F+P++I LII A +
Sbjct: 9 ILSNALFLVIKLVAAIIVPSLIVGLIVSVFQAATSINEQTLSFLPRLIVTLFALIIGAHW 68
Query: 69 IGGQISSFVT-LVLS 82
+ ++ F T LV+S
Sbjct: 69 LTQELMDFFTGLVMS 83
>gi|330879021|gb|EGH13170.1| type III secretion component [Pseudomonas syringae pv. glycinea
str. race 4]
Length = 67
Score = 37.0 bits (84), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTL 49
M + L + A+ T+L SAP L A+ +G+ + LQALTQIQ+ TL
Sbjct: 1 MGQDVFLSLMNKALMTVLLLSAPALVVAIVVGLSVGLLQALTQIQDQTL 49
>gi|113969636|ref|YP_733429.1| flagellar biosynthetic protein FliQ [Shewanella sp. MR-4]
gi|114046866|ref|YP_737416.1| flagellar biosynthetic protein FliQ [Shewanella sp. MR-7]
gi|117919801|ref|YP_868993.1| flagellar biosynthetic protein FliQ [Shewanella sp. ANA-3]
gi|113884320|gb|ABI38372.1| flagellar biosynthetic protein FliQ [Shewanella sp. MR-4]
gi|113888308|gb|ABI42359.1| flagellar biosynthetic protein FliQ [Shewanella sp. MR-7]
gi|117612133|gb|ABK47587.1| flagellar biosynthetic protein FliQ [Shewanella sp. ANA-3]
Length = 89
Score = 37.0 bits (84), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 47/84 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +++I R A+ I+ + ++ + +G+++A QA T I E TL+F+P++I +
Sbjct: 1 MTPEALIDIFREALAVIVMMVSAIVLPGLGIGLIVAVFQAATSINEQTLSFLPRLIVTLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
L++ ++ + F +++RI
Sbjct: 61 ALMVMGHWLVQTLMDFFIEMVNRI 84
>gi|188534809|ref|YP_001908606.1| Type III secretion apparatus [Erwinia tasmaniensis Et1/99]
gi|188029851|emb|CAO97732.1| Type III secretion apparatus [Erwinia tasmaniensis Et1/99]
Length = 84
Score = 37.0 bits (84), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 44/77 (57%)
Query: 4 ADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLI 63
+++L I +A+ +L +A + A +GI++ Q + QIQE TL F K++AVF ++
Sbjct: 2 SNILFIGNSALILVLKLTAVPIACATIVGIIVGLFQTVMQIQEQTLPFGLKMLAVFASIF 61
Query: 64 ISAPFIGGQISSFVTLV 80
I + ++ +F T V
Sbjct: 62 ILIEWFSAEMMNFATHV 78
>gi|91795012|ref|YP_564663.1| export protein FliQ [Shewanella denitrificans OS217]
gi|91717014|gb|ABE56940.1| export protein FliQ, family 3 [Shewanella denitrificans OS217]
Length = 89
Score = 37.0 bits (84), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 43/75 (57%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ ++ I AM+ ++ ++ + LG++IA QA TQ+ E TL+F+PK+I +
Sbjct: 1 MDTNELTVIFADAMYLVIIMVGVLITPGLILGVVIAVFQAATQVNEQTLSFLPKLILTLL 60
Query: 61 TLIISAPFIGGQISS 75
++ S ++ ++S
Sbjct: 61 MVLFSGSWLIQKLSD 75
>gi|168704085|ref|ZP_02736362.1| hypothetical protein GobsU_31414 [Gemmata obscuriglobus UQM 2246]
Length = 89
Score = 37.0 bits (84), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 39/68 (57%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + + L + P L ++ +G+L++ Q +T IQ+ TL++VP+II V +
Sbjct: 1 MTAEHVIRMTQELFLVALVVALPALVISLAVGLLVSIFQTVTSIQDQTLSYVPRIILVGL 60
Query: 61 TLIISAPF 68
L+++ F
Sbjct: 61 ALVVTLGF 68
>gi|212711700|ref|ZP_03319828.1| hypothetical protein PROVALCAL_02775 [Providencia alcalifaciens
DSM 30120]
gi|212685802|gb|EEB45330.1| hypothetical protein PROVALCAL_02775 [Providencia alcalifaciens
DSM 30120]
Length = 90
Score = 37.0 bits (84), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 11 RAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIG 70
+A + ++ S+ PV+ A +G+L+ LQ +TQ+QE TL F K++AVF +L + + ++
Sbjct: 10 KAMLLIVILSAIPVIV-ATVVGVLVGLLQTVTQLQEQTLPFGIKLLAVFGSLFMISGWLA 68
Query: 71 GQISSF 76
++ ++
Sbjct: 69 DKVMNY 74
>gi|218927895|ref|YP_002345770.1| putative flagellar assembly protein [Yersinia pestis CO92]
gi|115346506|emb|CAL19382.1| putative flagellar assembly protein [Yersinia pestis CO92]
Length = 89
Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 33/49 (67%)
Query: 28 AMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSF 76
++ +G+L++ QA TQI E TL+F+P+++ + LI + ++ ++S F
Sbjct: 28 SLLIGLLVSIFQATTQINEQTLSFLPRLVMTMLVLIFAGKWMMIKLSDF 76
>gi|22127345|ref|NP_670768.1| hypothetical protein y3470 [Yersinia pestis KIM 10]
gi|45442779|ref|NP_994318.1| flagellar biosynthesis/type III secretory pathway protein
[Yersinia pestis biovar Microtus str. 91001]
gi|51597654|ref|YP_071845.1| flagellar assembly/export protein, fliQ [Yersinia
pseudotuberculosis IP 32953]
gi|108809076|ref|YP_652992.1| putative flagellar assembly protein [Yersinia pestis Antiqua]
gi|108810731|ref|YP_646498.1| flagellar assembly protein [Yersinia pestis Nepal516]
gi|145597800|ref|YP_001161876.1| flagellar assembly protein [Yersinia pestis Pestoides F]
gi|150260266|ref|ZP_01916994.1| lateral flagellar export and assembly protein [Yersinia pestis
CA88-4125]
gi|162419711|ref|YP_001604862.1| flagellar biosynthetic protein FliQ [Yersinia pestis Angola]
gi|165924852|ref|ZP_02220684.1| flagellar biosynthetic protein FliQ [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165939032|ref|ZP_02227584.1| flagellar biosynthetic protein FliQ [Yersinia pestis biovar
Orientalis str. IP275]
gi|166008751|ref|ZP_02229649.1| flagellar biosynthetic protein FliQ [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166211991|ref|ZP_02238026.1| flagellar biosynthetic protein FliQ [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167399325|ref|ZP_02304849.1| flagellar biosynthetic protein FliQ [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167419024|ref|ZP_02310777.1| flagellar biosynthetic protein FliQ [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167425099|ref|ZP_02316852.1| flagellar biosynthetic protein FliQ [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|167466358|ref|ZP_02331062.1| putative flagellar assembly protein [Yersinia pestis FV-1]
gi|170022954|ref|YP_001719459.1| flagellar biosynthetic protein FliQ [Yersinia pseudotuberculosis
YPIII]
gi|186896788|ref|YP_001873900.1| flagellar biosynthetic protein FliQ [Yersinia pseudotuberculosis
PB1/+]
gi|229837391|ref|ZP_04457554.1| Flagellar biosynthesis protein fliQ [Yersinia pestis Pestoides A]
gi|229840604|ref|ZP_04460763.1| Flagellar biosynthesis protein fliQ [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229842845|ref|ZP_04462997.1| Flagellar biosynthesis protein fliQ [Yersinia pestis biovar
Orientalis str. India 195]
gi|229900928|ref|ZP_04516052.1| Flagellar biosynthesis protein fliQ [Yersinia pestis Nepal516]
gi|270487691|ref|ZP_06204765.1| flagellar biosynthetic protein FliQ [Yersinia pestis KIM D27]
gi|21960428|gb|AAM87019.1|AE013950_4 hypothetical [Yersinia pestis KIM 10]
gi|45437645|gb|AAS63195.1| Flagellar biosynthesis/type III secretory pathway protein
[Yersinia pestis biovar Microtus str. 91001]
gi|51590936|emb|CAH22592.1| Putative flagellar assembly/export protein, fliQ [Yersinia
pseudotuberculosis IP 32953]
gi|108774379|gb|ABG16898.1| flagellar assembly protein [Yersinia pestis Nepal516]
gi|108780989|gb|ABG15047.1| putative flagellar assembly protein [Yersinia pestis Antiqua]
gi|145209496|gb|ABP38903.1| flagellar assembly protein [Yersinia pestis Pestoides F]
gi|149289674|gb|EDM39751.1| lateral flagellar export and assembly protein [Yersinia pestis
CA88-4125]
gi|162352526|gb|ABX86474.1| flagellar biosynthetic protein FliQ [Yersinia pestis Angola]
gi|165912988|gb|EDR31613.1| flagellar biosynthetic protein FliQ [Yersinia pestis biovar
Orientalis str. IP275]
gi|165923052|gb|EDR40203.1| flagellar biosynthetic protein FliQ [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165992090|gb|EDR44391.1| flagellar biosynthetic protein FliQ [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166206737|gb|EDR51217.1| flagellar biosynthetic protein FliQ [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166963018|gb|EDR59039.1| flagellar biosynthetic protein FliQ [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167051829|gb|EDR63237.1| flagellar biosynthetic protein FliQ [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167055862|gb|EDR65643.1| flagellar biosynthetic protein FliQ [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|169749488|gb|ACA67006.1| flagellar biosynthetic protein FliQ [Yersinia pseudotuberculosis
YPIII]
gi|186699814|gb|ACC90443.1| flagellar biosynthetic protein FliQ [Yersinia pseudotuberculosis
PB1/+]
gi|229682267|gb|EEO78359.1| Flagellar biosynthesis protein fliQ [Yersinia pestis Nepal516]
gi|229690112|gb|EEO82169.1| Flagellar biosynthesis protein fliQ [Yersinia pestis biovar
Orientalis str. India 195]
gi|229696970|gb|EEO87017.1| Flagellar biosynthesis protein fliQ [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229705514|gb|EEO91524.1| Flagellar biosynthesis protein fliQ [Yersinia pestis Pestoides A]
gi|270336195|gb|EFA46972.1| flagellar biosynthetic protein FliQ [Yersinia pestis KIM D27]
gi|320016728|gb|ADW00300.1| Flagellar biosynthesis protein fliQ [Yersinia pestis biovar
Medievalis str. Harbin 35]
Length = 90
Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 33/49 (67%)
Query: 28 AMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSF 76
++ +G+L++ QA TQI E TL+F+P+++ + LI + ++ ++S F
Sbjct: 29 SLLIGLLVSIFQATTQINEQTLSFLPRLVMTMLVLIFAGKWMMIKLSDF 77
>gi|149908779|ref|ZP_01897439.1| flagellar biosynthetic protein [Moritella sp. PE36]
gi|149808053|gb|EDM67994.1| flagellar biosynthetic protein [Moritella sp. PE36]
Length = 89
Score = 36.6 bits (83), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 44/76 (57%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + A+ TI++ + ++ + +G++++ QA TQIQE TL+F+PK+I +
Sbjct: 1 MTPEQVVSLMGLAVNTIIAMVSVLVIPGLVVGLIVSVFQAATQIQEQTLSFLPKLIVTLL 60
Query: 61 TLIISAPFIGGQISSF 76
+ + ++ Q+ +
Sbjct: 61 MVTFAGHWLLAQVKAL 76
>gi|238762377|ref|ZP_04623348.1| Lateral flagellar export/assembly protein (FliQ-like) [Yersinia
kristensenii ATCC 33638]
gi|238699362|gb|EEP92108.1| Lateral flagellar export/assembly protein (FliQ-like) [Yersinia
kristensenii ATCC 33638]
Length = 90
Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 30/45 (66%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSF 76
G+L++ QA TQI E TL+F+P+++ + LI + ++ ++S F
Sbjct: 33 GLLVSIFQATTQINEQTLSFLPRLVMTMLVLIFAGKWMMTKLSDF 77
>gi|157376187|ref|YP_001474787.1| flagellar biosynthetic protein FliQ [Shewanella sediminis
HAW-EB3]
gi|157318561|gb|ABV37659.1| flagellar biosynthetic protein FliQ [Shewanella sediminis
HAW-EB3]
Length = 89
Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 38/63 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN +++I R A+ I++ + ++ + +G+++A QA T I E TL+F+P+++
Sbjct: 1 MNPESLVDIFREALTVIVTIVSLIIVPGLIIGLVVAVFQAATSINEQTLSFLPRLLTTLF 60
Query: 61 TLI 63
L+
Sbjct: 61 ALM 63
>gi|222833216|gb|EEE71693.1| predicted protein [Populus trichocarpa]
Length = 314
Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Query: 23 PVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQIS 74
PVL + +G+ ++ QA+TQ+ E TL FVPK+I+ + I+ GG +S
Sbjct: 2 PVLGVVLAVGLAVSVFQAVTQVHEATLAFVPKLISAVLVFAIA----GGGLS 49
>gi|194292011|ref|YP_002007918.1| scts: non flagellar t3S system conserved transmembrane protein.
belongs to the fliq/mopd/spaq family. [Cupriavidus
taiwanensis LMG 19424]
gi|193225915|emb|CAQ71862.1| SctS: non flagellar T3S system conserved transmembrane protein.
Belongs to the fliQ/mopD/spaQ family [Cupriavidus
taiwanensis LMG 19424]
Length = 88
Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 37/61 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +L+I R A+ +L + PV+ + +++A LQA+TQIQ+ ++ ++IAV +
Sbjct: 1 MGADTILDITRQALLVVLWVTLPVVLIGTLVALVVAVLQAVTQIQDQSIGTSARLIAVLV 60
Query: 61 T 61
+
Sbjct: 61 S 61
>gi|56460297|ref|YP_155578.1| flagellar biosynthesis protein FliQ [Idiomarina loihiensis L2TR]
gi|56179307|gb|AAV82029.1| Flagellar biosynthesis protein FliQ [Idiomarina loihiensis L2TR]
Length = 89
Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 43/78 (55%)
Query: 7 LEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISA 66
L+I + A+ TI+ A ++ + +G+++A QA T I E TL+F+P+++ + +
Sbjct: 7 LDIFQEALKTIVIMVAFIIIPGLLVGLVVAVFQAATSINEQTLSFLPRLLVTLAVIGLGG 66
Query: 67 PFIGGQISSFVTLVLSRI 84
F+ + F + +RI
Sbjct: 67 HFLTETVMDFTIEMFNRI 84
>gi|24374729|ref|NP_718772.1| flagellar biosynthetic protein FliQ [Shewanella oneidensis MR-1]
gi|24349389|gb|AAN56216.1|AE015759_8 flagellar biosynthetic protein FliQ [Shewanella oneidensis MR-1]
Length = 89
Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 47/84 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +++I R A+ I+ + ++ + +G+++A QA T I E TL+F+P++I +
Sbjct: 1 MTPEALIDIFREALAVIVMMVSAIVLPGLGIGLIVAVFQAATSINEQTLSFLPRLIVTLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
L++ ++ + F +++RI
Sbjct: 61 ALMLMGHWLVQTLMDFFIEMVNRI 84
>gi|183600581|ref|ZP_02962074.1| hypothetical protein PROSTU_04167 [Providencia stuartii ATCC
25827]
gi|188019858|gb|EDU57898.1| hypothetical protein PROSTU_04167 [Providencia stuartii ATCC
25827]
Length = 90
Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 11 RAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIG 70
+A + ++ S+ PV+ A +G+L+ +Q +TQ+QE TL F K++AVF +L + + ++
Sbjct: 10 KAMLLIVMLSAIPVIV-ATVVGLLVGLIQTVTQLQEQTLPFGIKLLAVFGSLFMISGWLA 68
Query: 71 GQISSFVTLVLS 82
++ ++ VL+
Sbjct: 69 DKVMNYALEVLT 80
>gi|315126006|ref|YP_004068009.1| flagellar biosynthetic protein FliQ [Pseudoalteromonas sp.
SM9913]
gi|315014520|gb|ADT67858.1| flagellar biosynthetic protein FliQ [Pseudoalteromonas sp.
SM9913]
Length = 89
Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 39/62 (62%)
Query: 8 EIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAP 67
E+ +A++TI+ ++ + LGI++A +Q T IQE TLTF+P+++ + ++ +
Sbjct: 8 ELISSAVYTIIKLILVLIVPGLLLGIVVAIIQGATSIQEQTLTFLPRMLLTLLMVVFAGH 67
Query: 68 FI 69
++
Sbjct: 68 WM 69
>gi|15642121|ref|NP_231753.1| flagellar biosynthesis protein FliQ [Vibrio cholerae O1 biovar El
Tor str. N16961]
gi|121586789|ref|ZP_01676571.1| flagellar biosynthetic protein FliQ [Vibrio cholerae 2740-80]
gi|121727200|ref|ZP_01680367.1| flagellar biosynthetic protein FliQ [Vibrio cholerae V52]
gi|147674176|ref|YP_001217643.1| flagellar biosynthesis protein FliQ [Vibrio cholerae O395]
gi|153213236|ref|ZP_01948648.1| flagellar biosynthetic protein FliQ [Vibrio cholerae 1587]
gi|153803033|ref|ZP_01957619.1| flagellar biosynthetic protein FliQ [Vibrio cholerae MZO-3]
gi|153818983|ref|ZP_01971650.1| flagellar biosynthetic protein FliQ [Vibrio cholerae NCTC 8457]
gi|153822895|ref|ZP_01975562.1| flagellar biosynthetic protein FliQ [Vibrio cholerae B33]
gi|153825582|ref|ZP_01978249.1| flagellar biosynthetic protein FliQ [Vibrio cholerae MZO-2]
gi|153828603|ref|ZP_01981270.1| flagellar biosynthetic protein FliQ [Vibrio cholerae 623-39]
gi|227082247|ref|YP_002810798.1| flagellar biosynthetic protein FliQ [Vibrio cholerae M66-2]
gi|229507793|ref|ZP_04397298.1| flagellar biosynthesis protein FliQ [Vibrio cholerae BX 330286]
gi|229511970|ref|ZP_04401449.1| flagellar biosynthesis protein FliQ [Vibrio cholerae B33]
gi|229513773|ref|ZP_04403235.1| flagellar biosynthesis protein FliQ [Vibrio cholerae TMA 21]
gi|229519106|ref|ZP_04408549.1| flagellar biosynthesis protein FliQ [Vibrio cholerae RC9]
gi|229522075|ref|ZP_04411492.1| flagellar biosynthesis protein FliQ [Vibrio cholerae TM 11079-80]
gi|229528866|ref|ZP_04418256.1| flagellar biosynthesis protein FliQ [Vibrio cholerae 12129(1)]
gi|229607338|ref|YP_002877986.1| flagellar biosynthesis protein FliQ [Vibrio cholerae MJ-1236]
gi|254291358|ref|ZP_04962151.1| flagellar biosynthetic protein FliQ [Vibrio cholerae AM-19226]
gi|254849207|ref|ZP_05238557.1| flagellar biosynthesis protein FliQ [Vibrio cholerae MO10]
gi|255745139|ref|ZP_05419088.1| flagellar biosynthesis protein FliQ [Vibrio cholera CIRS 101]
gi|262153471|ref|ZP_06028601.1| flagellar biosynthesis protein FliQ [Vibrio cholerae INDRE 91/1]
gi|262167481|ref|ZP_06035187.1| flagellar biosynthesis protein FliQ [Vibrio cholerae RC27]
gi|262191371|ref|ZP_06049561.1| flagellar biosynthesis protein FliQ [Vibrio cholerae CT 5369-93]
gi|297582020|ref|ZP_06943939.1| flagellar biosynthetic protein FliQ [Vibrio cholerae RC385]
gi|298497856|ref|ZP_07007663.1| flagellar biosynthetic protein FliQ [Vibrio cholerae MAK 757]
gi|9656672|gb|AAF95267.1| flagellar biosynthetic protein FliQ [Vibrio cholerae O1 biovar El
Tor str. N16961]
gi|121548956|gb|EAX58995.1| flagellar biosynthetic protein FliQ [Vibrio cholerae 2740-80]
gi|121630445|gb|EAX62838.1| flagellar biosynthetic protein FliQ [Vibrio cholerae V52]
gi|124116036|gb|EAY34856.1| flagellar biosynthetic protein FliQ [Vibrio cholerae 1587]
gi|124121431|gb|EAY40174.1| flagellar biosynthetic protein FliQ [Vibrio cholerae MZO-3]
gi|126510478|gb|EAZ73072.1| flagellar biosynthetic protein FliQ [Vibrio cholerae NCTC 8457]
gi|126519591|gb|EAZ76814.1| flagellar biosynthetic protein FliQ [Vibrio cholerae B33]
gi|146316059|gb|ABQ20598.1| flagellar biosynthetic protein FliQ [Vibrio cholerae O395]
gi|148875874|gb|EDL74009.1| flagellar biosynthetic protein FliQ [Vibrio cholerae 623-39]
gi|149740733|gb|EDM54832.1| flagellar biosynthetic protein FliQ [Vibrio cholerae MZO-2]
gi|150422688|gb|EDN14642.1| flagellar biosynthetic protein FliQ [Vibrio cholerae AM-19226]
gi|227010135|gb|ACP06347.1| flagellar biosynthetic protein FliQ [Vibrio cholerae M66-2]
gi|227014018|gb|ACP10228.1| flagellar biosynthetic protein FliQ [Vibrio cholerae O395]
gi|229332640|gb|EEN98126.1| flagellar biosynthesis protein FliQ [Vibrio cholerae 12129(1)]
gi|229341000|gb|EEO06005.1| flagellar biosynthesis protein FliQ [Vibrio cholerae TM 11079-80]
gi|229343795|gb|EEO08770.1| flagellar biosynthesis protein FliQ [Vibrio cholerae RC9]
gi|229348954|gb|EEO13911.1| flagellar biosynthesis protein FliQ [Vibrio cholerae TMA 21]
gi|229351935|gb|EEO16876.1| flagellar biosynthesis protein FliQ [Vibrio cholerae B33]
gi|229355298|gb|EEO20219.1| flagellar biosynthesis protein FliQ [Vibrio cholerae BX 330286]
gi|229369993|gb|ACQ60416.1| flagellar biosynthesis protein FliQ [Vibrio cholerae MJ-1236]
gi|254844912|gb|EET23326.1| flagellar biosynthesis protein FliQ [Vibrio cholerae MO10]
gi|255736969|gb|EET92365.1| flagellar biosynthesis protein FliQ [Vibrio cholera CIRS 101]
gi|262024053|gb|EEY42748.1| flagellar biosynthesis protein FliQ [Vibrio cholerae RC27]
gi|262030708|gb|EEY49342.1| flagellar biosynthesis protein FliQ [Vibrio cholerae INDRE 91/1]
gi|262032746|gb|EEY51294.1| flagellar biosynthesis protein FliQ [Vibrio cholerae CT 5369-93]
gi|297533715|gb|EFH72557.1| flagellar biosynthetic protein FliQ [Vibrio cholerae RC385]
gi|297542189|gb|EFH78239.1| flagellar biosynthetic protein FliQ [Vibrio cholerae MAK 757]
gi|327484650|gb|AEA79057.1| Flagellar biosynthesis protein FliQ [Vibrio cholerae LMA3894-4]
Length = 89
Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 44/81 (54%)
Query: 8 EIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAP 67
E+ + ++W +L ++ ++ +G+++A QA T I E TL+F+P++I + L+
Sbjct: 8 ELFKESLWLVLIMVCAIIIPSLLVGLVVAIFQAATSINEQTLSFLPRLIITLLALMFFGH 67
Query: 68 FIGGQISSFVTLVLSRIQSSL 88
++ + F ++ R+ L
Sbjct: 68 WMTQILMDFFYSMIERMPQVL 88
>gi|255321318|ref|ZP_05362480.1| flagellar biosynthetic protein FliQ [Campylobacter showae RM3277]
gi|255301637|gb|EET80892.1| flagellar biosynthetic protein FliQ [Campylobacter showae RM3277]
Length = 88
Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 41/66 (62%)
Query: 21 SAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLV 80
S P+L + + G++I+ QA TQI E+TL+FVPKII V + +I P++ + F T +
Sbjct: 20 SFPMLLAGLSAGLIISIFQATTQINEMTLSFVPKIILVVVVIIFLMPWMVSMMVDFTTRM 79
Query: 81 LSRIQS 86
+ I +
Sbjct: 80 IEFIPN 85
>gi|209920316|ref|YP_002294400.1| putative type III secretion protein [Escherichia coli SE11]
gi|300815710|ref|ZP_07095934.1| putative surface presentation of antigens protein SpaQ
[Escherichia coli MS 107-1]
gi|307310521|ref|ZP_07590169.1| export protein FliQ family 3 [Escherichia coli W]
gi|312972919|ref|ZP_07787092.1| epaQ [Escherichia coli 1827-70]
gi|331654350|ref|ZP_08355350.1| surface presentation of antigens protein SpaQ [Escherichia coli
M718]
gi|209913575|dbj|BAG78649.1| putative type III secretion protein [Escherichia coli SE11]
gi|300531639|gb|EFK52701.1| putative surface presentation of antigens protein SpaQ
[Escherichia coli MS 107-1]
gi|306909416|gb|EFN39911.1| export protein FliQ family 3 [Escherichia coli W]
gi|310332861|gb|EFQ00075.1| epaQ [Escherichia coli 1827-70]
gi|320202505|gb|EFW77075.1| Surface presentation of antigens protein SpaQ [Escherichia coli
EC4100B]
gi|323153850|gb|EFZ40086.1| epaQ [Escherichia coli EPECa14]
gi|324119901|gb|EGC13780.1| export protein 3 [Escherichia coli E1167]
gi|331047732|gb|EGI19809.1| surface presentation of antigens protein SpaQ [Escherichia coli
M718]
Length = 61
Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAV 58
D++ A++ IL SA + A F+G+L+ Q +TQ+QE TL F K++ V
Sbjct: 3 DIVFAGNRALYLILVMSAGPIAVATFVGLLVGLFQTVTQLQEQTLPFGVKLLCV 56
>gi|171319015|ref|ZP_02908142.1| export protein FliQ family 3 [Burkholderia ambifaria MEX-5]
gi|171095770|gb|EDT40723.1| export protein FliQ family 3 [Burkholderia ambifaria MEX-5]
Length = 94
Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 32/49 (65%)
Query: 16 TILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
+I+ S PV+ +A+ +GIL+ QA+TQ+Q+ ++ + KI V L+I
Sbjct: 16 SIVMVSGPVVLAALVVGILVGIAQAVTQVQDQSIGYGIKIAVVLFILVI 64
>gi|307720025|ref|YP_003891165.1| flagellar biosynthetic protein FliQ [Sulfurimonas autotrophica
DSM 16294]
gi|306978118|gb|ADN08153.1| flagellar biosynthetic protein FliQ [Sulfurimonas autotrophica
DSM 16294]
Length = 88
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 38/58 (65%)
Query: 27 SAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSRI 84
+ M G+ I+ QA TQI E+TL+F+PKII V I ++++ P++ +++ F V + I
Sbjct: 26 TGMLAGLAISIFQATTQINEMTLSFIPKIIGVVIVIVLTMPWMLNEMTDFSIGVFNMI 83
>gi|163750539|ref|ZP_02157777.1| flagellar biosynthetic protein FliQ [Shewanella benthica KT99]
gi|294140214|ref|YP_003556192.1| flagellar biosynthetic protein FliQ [Shewanella violacea DSS12]
gi|161329694|gb|EDQ00683.1| flagellar biosynthetic protein FliQ [Shewanella benthica KT99]
gi|293326683|dbj|BAJ01414.1| flagellar biosynthetic protein FliQ [Shewanella violacea DSS12]
Length = 89
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 38/63 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN +++I R A+ I++ + ++ + +G+++A QA T I E TL+F+P+++
Sbjct: 1 MNPESLVDIFREALSVIVTIVSLIIVPGLVIGLVVAVFQAATSINEQTLSFLPRLLTTLF 60
Query: 61 TLI 63
L+
Sbjct: 61 ALM 63
>gi|109899341|ref|YP_662596.1| flagellar biosynthetic protein FliQ [Pseudoalteromonas atlantica
T6c]
gi|332305670|ref|YP_004433521.1| flagellar biosynthetic protein FliQ [Glaciecola agarilytica
4H-3-7+YE-5]
gi|109701622|gb|ABG41542.1| flagellar biosynthetic protein FliQ [Pseudoalteromonas atlantica
T6c]
gi|332172999|gb|AEE22253.1| flagellar biosynthetic protein FliQ [Glaciecola agarilytica
4H-3-7+YE-5]
Length = 89
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 44/77 (57%)
Query: 8 EIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAP 67
+I + A+ ++ + ++ ++F+G+++A QA T I E T++F+P++I + L
Sbjct: 8 DILKEALNMVILLVSAIILPSLFVGLIVAVFQAATSINEQTMSFLPRLIVTLLALSWGGH 67
Query: 68 FIGGQISSFVTLVLSRI 84
++ Q+ F ++ RI
Sbjct: 68 WLVQQLMDFTFTMVERI 84
>gi|321399837|emb|CBJ44674.1| putative type III secretion system protein HrcS [Pseudomonas sp.
MTR-J5-721]
Length = 88
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 50/83 (60%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
+ LE+ + M+ ++ +AP L A+ +G+L + +QAL QIQ+ TL F K++AV +TL
Sbjct: 2 EALELFKQGMYLVVILTAPPLLVAVLVGVLTSLVQALMQIQDQTLPFGIKLVAVGVTLAA 61
Query: 65 SAPFIGGQISSFVTLVLSRIQSS 87
+ +IG ++ F+ + I +
Sbjct: 62 TGRWIGVELILFINMAFDLIART 84
>gi|170698144|ref|ZP_02889223.1| type III secretion protein, HrpO family [Burkholderia ambifaria
IOP40-10]
gi|170136909|gb|EDT05158.1| type III secretion protein, HrpO family [Burkholderia ambifaria
IOP40-10]
Length = 84
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 31/45 (68%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSF 76
G+ + QA+TQIQE TL F K++AVF L++ + +IG ++ +F
Sbjct: 30 GLAVGLFQAVTQIQEQTLPFGIKLLAVFGVLLLLSNWIGEKLLAF 74
>gi|28901398|ref|NP_801053.1| flagellar biosynthetic protein [Vibrio parahaemolyticus RIMD
2210633]
gi|153835871|ref|ZP_01988538.1| flagellar biosynthetic protein FliQ [Vibrio parahaemolyticus
AQ3810]
gi|260362952|ref|ZP_05775821.1| flagellar biosynthetic protein FliQ [Vibrio parahaemolyticus
K5030]
gi|260880239|ref|ZP_05892594.1| flagellar biosynthetic protein FliQ [Vibrio parahaemolyticus
AN-5034]
gi|260895356|ref|ZP_05903852.1| flagellar biosynthetic protein FliQ [Vibrio parahaemolyticus
Peru-466]
gi|260901181|ref|ZP_05909576.1| flagellar biosynthetic protein FliQ [Vibrio parahaemolyticus
AQ4037]
gi|28809945|dbj|BAC62886.1| flagellar biosynthetic protein [Vibrio parahaemolyticus RIMD
2210633]
gi|149750625|gb|EDM61370.1| flagellar biosynthetic protein FliQ [Vibrio parahaemolyticus
AQ3810]
gi|308085740|gb|EFO35435.1| flagellar biosynthetic protein FliQ [Vibrio parahaemolyticus
Peru-466]
gi|308092707|gb|EFO42402.1| flagellar biosynthetic protein FliQ [Vibrio parahaemolyticus
AN-5034]
gi|308109349|gb|EFO46889.1| flagellar biosynthetic protein FliQ [Vibrio parahaemolyticus
AQ4037]
gi|308112057|gb|EFO49597.1| flagellar biosynthetic protein FliQ [Vibrio parahaemolyticus
K5030]
gi|328469332|gb|EGF40278.1| flagellar biosynthetic protein [Vibrio parahaemolyticus 10329]
Length = 89
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 35/57 (61%)
Query: 13 AMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
A+W I+ A ++ + +G+ IA QA TQI E TL+F+P++I + +I + +I
Sbjct: 13 AVWLIILMVAVLVVPGLIVGLGIAVFQAATQINEQTLSFLPRLIVTLLMVIFAGHWI 69
>gi|126176173|ref|YP_001052322.1| export protein FliQ [Shewanella baltica OS155]
gi|125999378|gb|ABN63453.1| export protein FliQ, family 3 [Shewanella baltica OS155]
Length = 89
Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 31/48 (64%)
Query: 28 AMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISS 75
+ LG+++A QA TQ+ E TL+F+P++I + ++ S ++ QIS
Sbjct: 28 GLILGLIVAVFQAATQVNEQTLSFLPRLIITLLMVLFSGHWLIQQISD 75
>gi|323493115|ref|ZP_08098246.1| flagellar biosynthesis protein FliQ [Vibrio brasiliensis LMG
20546]
gi|323312586|gb|EGA65719.1| flagellar biosynthesis protein FliQ [Vibrio brasiliensis LMG
20546]
Length = 89
Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 36/57 (63%)
Query: 13 AMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
A+W I++ A ++ + +G+ IA QA TQI E TL+F+P+++ + +I + ++
Sbjct: 13 AVWLIITMVAVLVVPGLIVGLGIAIFQAATQINEQTLSFLPRLLVTLLMVIFAGHWM 69
>gi|223039969|ref|ZP_03610251.1| flagellar biosynthetic protein FliQ [Campylobacter rectus RM3267]
gi|222878689|gb|EEF13788.1| flagellar biosynthetic protein FliQ [Campylobacter rectus RM3267]
Length = 89
Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 21 SAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPK 54
S P+L + + G++I+ QA TQI E+TL+FVPK
Sbjct: 20 SFPMLLAGLSAGLIISIFQATTQINEMTLSFVPK 53
>gi|114562371|ref|YP_749884.1| flagellar biosynthetic protein FliQ [Shewanella frigidimarina
NCIMB 400]
gi|114333664|gb|ABI71046.1| flagellar biosynthetic protein FliQ [Shewanella frigidimarina
NCIMB 400]
Length = 89
Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 38/63 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ +++I R A+ I+ + ++ +F+G+++A QA T I E TL+F+P+++
Sbjct: 1 MSPESLIDIFREALSVIVLIVSAIILPGLFIGLIVAVFQAATSINEQTLSFLPRLLVTLF 60
Query: 61 TLI 63
L+
Sbjct: 61 ALM 63
>gi|260779324|ref|ZP_05888216.1| flagellar biosynthesis protein FliQ [Vibrio coralliilyticus ATCC
BAA-450]
gi|260605488|gb|EEX31783.1| flagellar biosynthesis protein FliQ [Vibrio coralliilyticus ATCC
BAA-450]
Length = 89
Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 36/57 (63%)
Query: 13 AMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
A+W I++ A ++ + +G+ IA QA TQI E TL+F+P+++ + +I + ++
Sbjct: 13 AVWLIITMVAVLVVPGLIVGLGIAIFQAATQINEQTLSFLPRLLVTLLMVIFAGHWM 69
>gi|282599888|ref|ZP_05972234.2| surface presentation of antigens protein SpaQ [Providencia
rustigianii DSM 4541]
gi|282567504|gb|EFB73039.1| surface presentation of antigens protein SpaQ [Providencia
rustigianii DSM 4541]
Length = 91
Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 11 RAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIG 70
+A + ++ S+ PV+ A +G+L+ LQ +TQ+QE TL F K++AVF L + + ++
Sbjct: 11 KAMLLIVILSAIPVIV-ATVVGLLVGLLQTVTQLQEQTLPFGIKLLAVFGCLFMISGWLA 69
Query: 71 GQISSF 76
++ ++
Sbjct: 70 DKVMNY 75
>gi|307945002|ref|ZP_07660339.1| flagellar biosynthetic protein FliQ [Roseibium sp. TrichSKD4]
gi|307771926|gb|EFO31150.1| flagellar biosynthetic protein FliQ [Roseibium sp. TrichSKD4]
Length = 146
Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 28/42 (66%)
Query: 17 ILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAV 58
I+ S P+L A +G++I+ Q LTQIQE TL + KI+AV
Sbjct: 76 IVEVSVPILAVATIVGLVISIFQVLTQIQEQTLPQIAKIVAV 117
>gi|312602788|ref|YP_004022633.1| type III secretion inner membrane protein SctS [Burkholderia
rhizoxinica HKI 454]
gi|306431591|emb|CBK52143.1| type III secretion inner membrane protein SctS [Burkholderia
rhizoxinica HKI 454]
gi|312170102|emb|CBW77114.1| type III secretion inner membrane protein SctS [Burkholderia
rhizoxinica HKI 454]
Length = 87
Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 39/68 (57%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ ++ + M + S P++ A +G+ ++FLQA+T +Q+ L+ K+IAV I
Sbjct: 1 MDINTLIRLTMHGMLLCMYVSLPIVSVAAAVGLAVSFLQAITSMQDQALSHGVKLIAVTI 60
Query: 61 TLIISAPF 68
+++ AP
Sbjct: 61 VIVVGAPM 68
>gi|54307252|ref|YP_128272.1| putative flagellar biosynthetic protein [Photobacterium profundum
SS9]
gi|46911672|emb|CAG18470.1| putative flagellar biosynthetic protein [Photobacterium profundum
SS9]
Length = 89
Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 42/78 (53%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN V A+ I+S ++ ++ +G++++ QA TQI E TL+F+P+++ F
Sbjct: 1 MNSEFVATFFGDALMIIVSMVCVLIVPSLLVGLVVSIFQAATQINEQTLSFLPRLLMTFA 60
Query: 61 TLIISAPFIGGQISSFVT 78
L + P++ +S T
Sbjct: 61 MLGFAGPWLLRTLSDLFT 78
>gi|330947802|gb|EGH48224.1| flagellar biosynthesis protein FliQ [Pseudomonas syringae pv.
pisi str. 1704B]
Length = 54
Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 36 AFLQALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
A QA TQI E TL+F+P+++ + ITLI+ P++
Sbjct: 1 AMFQAATQINEQTLSFLPRLLVMLITLIVIGPWL 34
>gi|330445377|ref|ZP_08309029.1| flagellar biosynthetic protein FliQ [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
gi|328489568|dbj|GAA03526.1| flagellar biosynthetic protein FliQ [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
Length = 89
Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 35/57 (61%)
Query: 8 EIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
EI + A++ +L ++ + +G+++A QA T I E TL+F+P+++ + L++
Sbjct: 8 EIFQEALYMVLVMVCAIVIPGLLIGLVVAVFQAATSINEQTLSFLPRLVVTLLALML 64
>gi|170698361|ref|ZP_02889435.1| type III secretion protein, HrpO family [Burkholderia ambifaria
IOP40-10]
gi|170136700|gb|EDT04954.1| type III secretion protein, HrpO family [Burkholderia ambifaria
IOP40-10]
Length = 87
Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 3 EADVL-EIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFIT 61
E D L I + LS S PV+ A G+ I+F+QA+T +Q+ ++++ K++AV T
Sbjct: 2 ETDTLVRITSQGLLLCLSVSMPVVAVAALSGLAISFVQAITSMQDQSISYAVKLVAVVAT 61
Query: 62 LIISAPFIGGQISSFVTLVLS 82
++++ + I F +++
Sbjct: 62 VLMTGAWGAAAILRFANQIIT 82
>gi|172064929|ref|YP_001815641.1| HrpO family type III secretion protein [Burkholderia ambifaria
MC40-6]
gi|171997171|gb|ACB68088.1| type III secretion protein, HrpO family [Burkholderia ambifaria
MC40-6]
Length = 87
Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 3 EADVL-EIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFIT 61
E D L I + LS S PV+ A G+ I+F+QA+T +Q+ ++++ K++AV T
Sbjct: 2 ETDTLVRITSQGLLLCLSVSMPVVAVAALSGLAISFVQAITSMQDQSISYAVKLVAVVAT 61
Query: 62 LIISAPFIGGQISSF 76
++++ + I F
Sbjct: 62 VLMTGAWGAAAILRF 76
>gi|157373225|ref|YP_001471825.1| export protein FliQ [Shewanella sediminis HAW-EB3]
gi|157315599|gb|ABV34697.1| export protein FliQ, family 3 [Shewanella sediminis HAW-EB3]
Length = 89
Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 32/48 (66%)
Query: 28 AMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISS 75
++ +G++IA QA TQ+ E TL+F+P+++ + ++ S ++ QIS
Sbjct: 28 SLLVGLIIAVFQAATQVNEQTLSFLPRLVLTLLMVLFSGQWLLQQISD 75
>gi|301303008|ref|ZP_07209135.1| putative surface presentation of antigens protein SpaQ
[Escherichia coli MS 124-1]
gi|300841672|gb|EFK69432.1| putative surface presentation of antigens protein SpaQ
[Escherichia coli MS 124-1]
Length = 68
Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFIT 61
D++ A++ IL SA + A F+G+L+ Q +TQ+QE TL F K++ V I
Sbjct: 3 DIVFAGNRALYLILVMSAGPIAVATFVGLLVGLFQTVTQLQEQTLPFGVKLLCVSIC 59
>gi|261341516|ref|ZP_05969374.1| flagellar biosynthetic protein FliQ [Enterobacter cancerogenus
ATCC 35316]
gi|288316314|gb|EFC55252.1| flagellar biosynthetic protein FliQ [Enterobacter cancerogenus
ATCC 35316]
Length = 90
Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 33/56 (58%)
Query: 21 SAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSF 76
SA + ++ +G+ ++ QA TQI E TL+F+P+++ LII ++ Q+ F
Sbjct: 22 SAVAIIPSLIVGLCVSIFQATTQINEQTLSFLPRLLVTLAVLIIGGKWMLTQLVDF 77
>gi|89075524|ref|ZP_01161935.1| flagellar biosynthesis protein [Photobacterium sp. SKA34]
gi|90579938|ref|ZP_01235746.1| flagellar biosynthesis protein [Vibrio angustum S14]
gi|89048796|gb|EAR54367.1| flagellar biosynthesis protein [Photobacterium sp. SKA34]
gi|90438823|gb|EAS64006.1| flagellar biosynthesis protein [Vibrio angustum S14]
Length = 89
Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 8 EIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAP 67
EI + A++ +L ++ + +G+++A QA T I E TL+F+P+++ + L+
Sbjct: 8 EIFQEALYMVLIMVCAIVIPGLLIGLVVAVFQAATSINEQTLSFLPRLVVTLLALM---- 63
Query: 68 FIGGQISSFVTLVLSRI 84
F G ++ + RI
Sbjct: 64 FFGHMMTQMLMDYFYRI 80
>gi|251789492|ref|YP_003004213.1| HrpO family type III secretion protein [Dickeya zeae Ech1591]
gi|247538113|gb|ACT06734.1| type III secretion protein, HrpO family [Dickeya zeae Ech1591]
Length = 86
Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 49/82 (59%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
+ L + R AM ++ SAP L A+ +G+LI+ LQA+ Q+Q+ TL F K++AV + L +
Sbjct: 2 ETLNLFRQAMVLVVMLSAPPLLVAVVVGVLISLLQAVMQLQDQTLPFAVKLVAVGLVLAM 61
Query: 65 SAPFIGGQISSFVTLVLSRIQS 86
+ +IG ++ + + I+
Sbjct: 62 TGRWIGVELIQLAMMAFNMIEQ 83
>gi|307718615|ref|YP_003874147.1| flagellar biosynthesis protein [Spirochaeta thermophila DSM 6192]
gi|306532340|gb|ADN01874.1| flagellar biosynthesis protein [Spirochaeta thermophila DSM 6192]
gi|315186372|gb|EFU20132.1| flagellar biosynthetic protein FliQ [Spirochaeta thermophila DSM
6578]
Length = 89
Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 49/76 (64%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + + + R+ ++ ++ +AP+L M +G++++ QA T IQE TLTFVPKI+A+ +
Sbjct: 1 MGLGEAIYLLRSGIYELIVIAAPLLLVGMLVGLIVSIFQATTSIQEQTLTFVPKILAILL 60
Query: 61 TLIISAPFIGGQISSF 76
L++ P++ +S F
Sbjct: 61 VLLLLGPWMLSSLSQF 76
>gi|157147126|ref|YP_001454445.1| hypothetical protein CKO_02903 [Citrobacter koseri ATCC BAA-895]
gi|157084331|gb|ABV14009.1| hypothetical protein CKO_02903 [Citrobacter koseri ATCC BAA-895]
Length = 90
Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 40/76 (52%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN +I + +L SA + ++ +G+ ++ QA TQI E TL+F+P+++
Sbjct: 2 MNMDTAGDIMATGIHLVLLISAVAIIPSLIVGLCVSIFQATTQINEQTLSFLPRLVVTLG 61
Query: 61 TLIISAPFIGGQISSF 76
LI + ++ Q+ F
Sbjct: 62 VLIFAGKWMLTQLVDF 77
>gi|212637762|ref|YP_002314287.1| flagellar biosynthesis protein FliQ [Shewanella piezotolerans
WP3]
gi|212559246|gb|ACJ31700.1| Flagellar biosynthesis protein FliQ [Shewanella piezotolerans
WP3]
Length = 89
Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 31/48 (64%)
Query: 28 AMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISS 75
+ +G+LIA QA TQ+ E TL+F+P+++ + ++ + ++ QIS
Sbjct: 28 GLLVGLLIAVFQAATQVNEQTLSFLPRLVLTLLMVLFAGEWLLQQISD 75
>gi|89094444|ref|ZP_01167384.1| flagellar biosynthetic protein FliQ [Oceanospirillum sp. MED92]
gi|89081336|gb|EAR60568.1| flagellar biosynthetic protein FliQ [Oceanospirillum sp. MED92]
Length = 89
Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 41/69 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M VL + A W I+ + ++ ++ +G++++ QA TQI E TL+F+P+++ +
Sbjct: 1 MTPEVVLSLFGEAFWLIVVLVSVIIVPSLIVGLIVSTFQAATQINEQTLSFLPRLLVTIL 60
Query: 61 TLIISAPFI 69
++ + P++
Sbjct: 61 VIMWTGPWL 69
>gi|91792695|ref|YP_562346.1| flagellar biosynthetic protein FliQ [Shewanella denitrificans
OS217]
gi|91714697|gb|ABE54623.1| flagellar biosynthetic protein FliQ [Shewanella denitrificans
OS217]
Length = 89
Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 38/63 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ +++I R A+ I+ + ++ +F+G+++A QA T I E TL+F+P+++
Sbjct: 1 MSPEALIDIFREALSVIVLIVSAIILPGLFIGLIVAVFQAATSINEQTLSFLPRLLVTLF 60
Query: 61 TLI 63
L+
Sbjct: 61 ALM 63
>gi|51587267|emb|CAE53655.1| putative HrcS [Pseudomonas fluorescens bv. I]
Length = 96
Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 39 QALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSRIQSS 87
QAL QIQ+ TL F K++AV +TLI++ +IG ++ + L I S
Sbjct: 36 QALMQIQDQTLPFGIKLVAVGVTLILTGRWIGVELIQLINLTFEMIGRS 84
>gi|126445424|ref|YP_001061221.1| flagellar biosynthetic protein FliQ [Burkholderia pseudomallei
668]
gi|134280861|ref|ZP_01767571.1| flagellar biosynthetic protein FliQ [Burkholderia pseudomallei
305]
gi|167725905|ref|ZP_02409141.1| flagellar biosynthetic protein FliQ [Burkholderia pseudomallei
DM98]
gi|167905064|ref|ZP_02492269.1| flagellar biosynthetic protein FliQ [Burkholderia pseudomallei
NCTC 13177]
gi|254182914|ref|ZP_04889507.1| flagellar biosynthetic protein FliQ [Burkholderia pseudomallei
1655]
gi|254299709|ref|ZP_04967158.1| flagellar biosynthetic protein FliQ [Burkholderia pseudomallei
406e]
gi|125657196|gb|ABN48684.1| FliQ [Burkholderia pseudomallei]
gi|126224915|gb|ABN88420.1| flagellar biosynthetic protein FliQ [Burkholderia pseudomallei
668]
gi|134247883|gb|EBA47967.1| flagellar biosynthetic protein FliQ [Burkholderia pseudomallei
305]
gi|157809667|gb|EDO86837.1| flagellar biosynthetic protein FliQ [Burkholderia pseudomallei
406e]
gi|184213448|gb|EDU10491.1| flagellar biosynthetic protein FliQ [Burkholderia pseudomallei
1655]
Length = 90
Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 33/56 (58%)
Query: 28 AMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSR 83
+ +G+++A QA TQI E TL+F+P+++A L+++ ++ + + +R
Sbjct: 29 GLLVGLVVALFQAATQINEQTLSFLPRLLATLAILVLAGHWLVQTLMDYCVATFTR 84
>gi|302387778|ref|YP_003823600.1| export protein FliQ family 3 [Clostridium saccharolyticum WM1]
gi|302198406|gb|ADL05977.1| export protein FliQ family 3 [Clostridium saccharolyticum WM1]
Length = 86
Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 23/30 (76%)
Query: 35 IAFLQALTQIQEVTLTFVPKIIAVFITLII 64
I+ LQA TQI E T+TFVPK+I + + L+I
Sbjct: 35 ISILQAATQIHEQTITFVPKLIVIGLVLLI 64
>gi|28628133|gb|AAO34617.1| HrcS [Erwinia chrysanthemi]
Length = 104
Score = 35.8 bits (81), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 43/66 (65%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
+ L + R AM ++ SAP L A+ +G+LI+ LQA+ Q+Q+ TL F K++AV + L +
Sbjct: 20 ETLNLFRQAMVLVVMLSAPPLLVAVVVGVLISLLQAVMQLQDQTLPFAVKLVAVGLVLAM 79
Query: 65 SAPFIG 70
+ +IG
Sbjct: 80 TGRWIG 85
>gi|91223204|ref|ZP_01258470.1| flagellar biosynthetic protein [Vibrio alginolyticus 12G01]
gi|153831770|ref|ZP_01984437.1| flagellar biosynthetic protein FliQ [Vibrio harveyi HY01]
gi|156976195|ref|YP_001447101.1| flagellar biosynthesis pathway, component FliQ [Vibrio harveyi
ATCC BAA-1116]
gi|254228805|ref|ZP_04922228.1| flagellar biosynthetic protein FliQ [Vibrio sp. Ex25]
gi|262396476|ref|YP_003288329.1| flagellar biosynthesis protein FliQ [Vibrio sp. Ex25]
gi|269960156|ref|ZP_06174532.1| Flagellar biosynthetic protein fliQ [Vibrio harveyi 1DA3]
gi|269967107|ref|ZP_06181174.1| Flagellar biosynthetic protein fliQ [Vibrio alginolyticus 40B]
gi|91192017|gb|EAS78280.1| flagellar biosynthetic protein [Vibrio alginolyticus 12G01]
gi|148872280|gb|EDL71097.1| flagellar biosynthetic protein FliQ [Vibrio harveyi HY01]
gi|151938752|gb|EDN57587.1| flagellar biosynthetic protein FliQ [Vibrio sp. Ex25]
gi|156527789|gb|ABU72874.1| hypothetical protein VIBHAR_04966 [Vibrio harveyi ATCC BAA-1116]
gi|262340070|gb|ACY53864.1| flagellar biosynthesis protein FliQ [Vibrio sp. Ex25]
gi|269828244|gb|EEZ82511.1| Flagellar biosynthetic protein fliQ [Vibrio alginolyticus 40B]
gi|269835127|gb|EEZ89210.1| Flagellar biosynthetic protein fliQ [Vibrio harveyi 1DA3]
Length = 89
Score = 35.8 bits (81), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 39/72 (54%)
Query: 13 AMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQ 72
A+W I+ A ++ + +G+ IA QA TQI E TL+F+P+++ + +I + ++ +
Sbjct: 13 AVWLIILMVAVLVVPGLIVGLCIAVFQAATQINEQTLSFLPRLLVTLLMVIFAGHWMLRK 72
Query: 73 ISSFVTLVLSRI 84
I + I
Sbjct: 73 IMELFDFLFHNI 84
>gi|224825751|ref|ZP_03698855.1| flagellar biosynthetic protein FliQ [Lutiella nitroferrum 2002]
gi|224601975|gb|EEG08154.1| flagellar biosynthetic protein FliQ [Lutiella nitroferrum 2002]
Length = 90
Score = 35.8 bits (81), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 32/52 (61%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSR 83
G++++ +QA TQI E TL+F+P+++ T+ ++ ++ G + F + R
Sbjct: 33 GVVVSLIQAATQINEQTLSFLPRLLITLGTIALAGHWMTGLLMDFCIDMFHR 84
>gi|120597288|ref|YP_961862.1| flagellar biosynthetic protein FliQ [Shewanella sp. W3-18-1]
gi|146294567|ref|YP_001184991.1| flagellar biosynthetic protein FliQ [Shewanella putrefaciens
CN-32]
gi|120557381|gb|ABM23308.1| flagellar biosynthetic protein FliQ [Shewanella sp. W3-18-1]
gi|145566257|gb|ABP77192.1| flagellar biosynthetic protein FliQ [Shewanella putrefaciens
CN-32]
Length = 89
Score = 35.8 bits (81), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 31/48 (64%)
Query: 28 AMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISS 75
+ LG+++A QA TQ+ E TL+F+P++I + ++ S ++ Q+S
Sbjct: 28 GLILGLIVAVFQAATQVNEQTLSFLPRLIITLLMVLFSGHWLIQQLSD 75
>gi|194443974|ref|YP_002041245.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|205360268|ref|ZP_02681706.2| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|194402637|gb|ACF62859.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|205351044|gb|EDZ37675.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
Length = 89
Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 39/53 (73%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSRI 84
G++I+ LQA TQI E+TL+F+PKI+AVFI +II+ P++ + +V + S +
Sbjct: 32 GLIISILQAATQINEMTLSFIPKIVAVFIAIIIAGPWMLNLLLDYVRTLFSNL 84
>gi|315140237|gb|ADT81110.1| RscS [Pseudomonas fluorescens]
gi|321399626|emb|CBJ44635.1| putative type III secretion system protein HrcS [Pseudomonas sp.
MTE-48-204]
gi|321399630|emb|CBJ44638.1| putative type III secretion system protein HrcS [Pseudomonas sp.
MTE-48-205]
Length = 88
Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 47/74 (63%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
+ LE+ + M+ ++ +AP L A+ +G+L + +QAL QIQ+ TL F K++AV +TL
Sbjct: 2 EALELFKQGMYLVVILTAPPLLVAVLVGVLTSLVQALMQIQDQTLPFGIKLVAVGVTLAA 61
Query: 65 SAPFIGGQISSFVT 78
+ +IG ++ F+
Sbjct: 62 TGRWIGVELILFIN 75
>gi|289663756|ref|ZP_06485337.1| hypothetical protein XcampvN_11949 [Xanthomonas campestris pv.
vasculorum NCPPB702]
gi|289668178|ref|ZP_06489253.1| hypothetical protein XcampmN_06705 [Xanthomonas campestris pv.
musacearum NCPPB4381]
Length = 86
Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ D++ A+ L S PV+ A G+LIAF+QA+ +Q+ +++F K++ V
Sbjct: 1 MDHDDLVRFTSEALLLCLKVSLPVVAVAALAGLLIAFIQAVMSLQDASISFALKLVVVVA 60
Query: 61 TLIISAPFIGGQISSF 76
+ ++AP+ I F
Sbjct: 61 AIAVTAPWGASAIMQF 76
>gi|304412525|ref|ZP_07394131.1| export protein FliQ family 3 [Shewanella baltica OS183]
gi|307307184|ref|ZP_07586922.1| export protein FliQ family 3 [Shewanella baltica BA175]
gi|304349167|gb|EFM13579.1| export protein FliQ family 3 [Shewanella baltica OS183]
gi|306910423|gb|EFN40854.1| export protein FliQ family 3 [Shewanella baltica BA175]
Length = 89
Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 31/48 (64%)
Query: 28 AMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISS 75
+ LG+++A QA TQ+ E TL+F+P++I + ++ S ++ Q+S
Sbjct: 28 GLILGLIVAVFQAATQVNEQTLSFLPRLIITLLMVLFSGHWLIQQLSD 75
>gi|21241174|ref|NP_640756.1| HrcS protein [Xanthomonas axonopodis pv. citri str. 306]
gi|5679189|gb|AAD46903.1|AF160974_6 HrcS homolog [Xanthomonas campestris pv. glycines]
gi|30524905|gb|AAP34350.1|AF499777_18 HrcS [Xanthomonas axonopodis pv. glycines]
gi|21106481|gb|AAM35292.1| HrcS protein [Xanthomonas axonopodis pv. citri str. 306]
Length = 86
Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ D++ A+ L S PV+ A G+LIAF+QA+ +Q+ +++F K++ V
Sbjct: 1 MDHDDLVRFTSEALLLCLKVSLPVVGVAALAGLLIAFIQAVMSLQDASISFALKLVVVVA 60
Query: 61 TLIISAPFIGGQISSF 76
+ ++AP+ I F
Sbjct: 61 AIAVTAPWGASAIMQF 76
>gi|311279109|ref|YP_003941340.1| flagellar biosynthetic protein FliQ [Enterobacter cloacae SCF1]
gi|308748304|gb|ADO48056.1| flagellar biosynthetic protein FliQ [Enterobacter cloacae SCF1]
Length = 89
Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 39/53 (73%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSRI 84
G++I+ LQA TQI E+TL+F+PKIIAVF+ +II+ P++ + +V + S +
Sbjct: 32 GLIISILQAATQINEMTLSFIPKIIAVFVAIIIAGPWMLNLLLDYVRTLFSNL 84
>gi|257457602|ref|ZP_05622769.1| flagellar biosynthetic protein FliQ [Treponema vincentii ATCC
35580]
gi|257444988|gb|EEV20064.1| flagellar biosynthetic protein FliQ [Treponema vincentii ATCC
35580]
Length = 90
Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 21/27 (77%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAV 58
G+++A QA T IQE TLTFVPKI+ +
Sbjct: 32 GLIVAIFQATTSIQEQTLTFVPKILTI 58
>gi|71278547|ref|YP_268255.1| flagellar biosynthetic protein FliQ [Colwellia psychrerythraea
34H]
gi|71144287|gb|AAZ24760.1| flagellar biosynthetic protein FliQ [Colwellia psychrerythraea
34H]
Length = 89
Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 38/63 (60%)
Query: 24 VLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSR 83
++ ++ +G+++A QA T I E TL+F+P++I + LII ++ ++ + +++
Sbjct: 24 IILPSLAVGLMVAVFQAATSINEQTLSFLPRLIVTLLALIIGGHWLVQKVMDYTIRLIAS 83
Query: 84 IQS 86
I S
Sbjct: 84 IPS 86
>gi|283834477|ref|ZP_06354218.1| flagellar biosynthetic protein FliQ [Citrobacter youngae ATCC
29220]
gi|291070024|gb|EFE08133.1| flagellar biosynthetic protein FliQ [Citrobacter youngae ATCC
29220]
Length = 90
Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 31/49 (63%)
Query: 28 AMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSF 76
++ +G+L++ QA+TQI E TL+F+P++I L I ++ Q+S
Sbjct: 29 SLLVGMLVSIFQAVTQINEQTLSFLPRLIVTLAVLGICGKWMIVQLSDL 77
>gi|58579703|ref|YP_198719.1| hypothetical protein XOO0080 [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|84621753|ref|YP_449125.1| HrcS protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|12802686|gb|AAK08057.1|AF320050_1 HrcS [Xanthomonas oryzae pv. oryzae]
gi|15341497|gb|AAK95646.1|AF404818_1 HrcS [Xanthomonas oryzae pv. oryzae]
gi|7288132|dbj|BAA92827.1| hrpD3 [Xanthomonas oryzae pv. oryzae]
gi|9711594|dbj|BAB07863.1| HrcS [Xanthomonas oryzae pv. oryzae]
gi|24251299|gb|AAN46418.1| HrcS [Xanthomonas oryzae pv. oryzae]
gi|50428357|dbj|BAD29994.1| HrcS [Xanthomonas oryzae pv. oryzae]
gi|58424297|gb|AAW73334.1| HrcS protein [Xanthomonas oryzae pv. oryzae KACC10331]
gi|84365693|dbj|BAE66851.1| HrcS protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
Length = 86
Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ D++ A+ L S PV+ A G+LIAF+QA+ +Q+ +++F K++ V
Sbjct: 1 MDHDDLVRFTSEALLLCLKVSLPVVGVAALTGLLIAFVQAVMSLQDASISFALKLVVVVA 60
Query: 61 TLIISAPFIGGQISSF 76
+ ++AP+ I F
Sbjct: 61 AIAVTAPWGASAIMQF 76
>gi|166714031|ref|ZP_02245238.1| HrcS [Xanthomonas oryzae pv. oryzicola BLS256]
gi|15341499|gb|AAK95647.1|AF404819_1 HrcS [Xanthomonas oryzae pv. oryzicola]
gi|111146914|gb|ABH07399.1| HrcS [Xanthomonas oryzae pv. oryzicola]
Length = 86
Score = 35.4 bits (80), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ D++ A+ L S PV+ A G+LIAF+QA+ +Q+ +++F K++ V
Sbjct: 1 MDHDDLVRFTSEALLLCLKVSLPVVSVAALTGLLIAFVQAVMSLQDASISFALKLVVVVA 60
Query: 61 TLIISAPFIGGQISSF 76
+ ++AP+ I F
Sbjct: 61 AIAVTAPWGASAIMQF 76
>gi|182412232|ref|YP_001817298.1| export protein FliQ [Opitutus terrae PB90-1]
gi|177839446|gb|ACB73698.1| export protein FliQ family 3 [Opitutus terrae PB90-1]
Length = 89
Score = 35.4 bits (80), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPK 54
MN ++ + + L +AP L + +G++ + LQ++T +QE TLTF+PK
Sbjct: 1 MNPELAIDFFKTTVVFALYIAAPFLLLTLVIGLVTSLLQSITSLQEQTLTFIPK 54
>gi|77165626|ref|YP_344151.1| flagellar biosynthesis protein FliQ [Nitrosococcus oceani ATCC
19707]
gi|254434890|ref|ZP_05048398.1| flagellar biosynthetic protein FliQ [Nitrosococcus oceani AFC27]
gi|300113614|ref|YP_003760189.1| flagellar biosynthetic protein FliQ [Nitrosococcus watsonii
C-113]
gi|76883940|gb|ABA58621.1| Flagellar biosynthesis protein FliQ [Nitrosococcus oceani ATCC
19707]
gi|207091223|gb|EDZ68494.1| flagellar biosynthetic protein FliQ [Nitrosococcus oceani AFC27]
gi|299539551|gb|ADJ27868.1| flagellar biosynthetic protein FliQ [Nitrosococcus watsonii
C-113]
Length = 89
Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 32/39 (82%)
Query: 31 LGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
+G+L++ QA TQI E+TL+F+PK++AV +TL ++ P++
Sbjct: 31 VGVLVSMFQAATQINEMTLSFIPKLLAVLLTLGLAGPWM 69
>gi|78045977|ref|YP_362152.1| HrcS protein [Xanthomonas campestris pv. vesicatoria str. 85-10]
gi|325927672|ref|ZP_08188900.1| HrcS protein [Xanthomonas perforans 91-118]
gi|4494849|gb|AAD21322.1| HrcS [Xanthomonas euvesicatoria]
gi|78034407|emb|CAJ22052.1| HrcS protein [Xanthomonas campestris pv. vesicatoria str. 85-10]
gi|159024058|gb|ABW87286.1| HrcS [Xanthomonas fuscans subsp. fuscans]
gi|325541873|gb|EGD13387.1| HrcS protein [Xanthomonas perforans 91-118]
Length = 86
Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ D++ A+ L S PV+ A G+LIAF+QA+ +Q+ +++F K++ V
Sbjct: 1 MDHDDLVRFTSEALLLCLKVSLPVVGVAALAGLLIAFVQAVMSLQDASISFALKLVVVVA 60
Query: 61 TLIISAPFIGGQISSF 76
+ ++AP+ I F
Sbjct: 61 AIAVTAPWGASAIMQF 76
>gi|218554529|ref|YP_002387442.1| flagellar biosynthesis protein FliQ [Escherichia coli IAI1]
gi|256017858|ref|ZP_05431723.1| flagellar biosynthesis protein FliQ [Shigella sp. D9]
gi|332278884|ref|ZP_08391297.1| flagellar biosynthesis protein [Shigella sp. D9]
gi|218361297|emb|CAQ98881.1| flagellar biosynthesis protein [Escherichia coli IAI1]
gi|332101236|gb|EGJ04582.1| flagellar biosynthesis protein [Shigella sp. D9]
Length = 89
Score = 35.0 bits (79), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 40/53 (75%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSRI 84
G++I+ LQA TQI E+TL+F+PKIIAVFI +II+ P++ + +V+ + + +
Sbjct: 32 GLIISILQAATQINEMTLSFIPKIIAVFIAIIIAGPWMLNLLLDYVSTLFTNL 84
>gi|119775421|ref|YP_928161.1| flagellar biosynthetic protein FliQ [Shewanella amazonensis SB2B]
gi|119767921|gb|ABM00492.1| flagellar biosynthetic protein FliQ [Shewanella amazonensis SB2B]
Length = 89
Score = 35.0 bits (79), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 43/76 (56%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +++I R A+ I+ A ++ + +G+++A QA T I E TL+F+P+++ +
Sbjct: 1 MTPEALIDIFREALAVIVMMVAVIIVPGLVVGLIVAVFQAATSINEQTLSFLPRLLVTLL 60
Query: 61 TLIISAPFIGGQISSF 76
L+++ ++ + F
Sbjct: 61 ALMMAGHWLVRTMMDF 76
>gi|34498078|ref|NP_902293.1| surface presentation of antigens secretory protein
[Chromobacterium violaceum ATCC 12472]
gi|34103933|gb|AAQ60293.1| surface presentation of antigens; secretory proteins
[Chromobacterium violaceum ATCC 12472]
Length = 86
Score = 35.0 bits (79), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 40/72 (55%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
D++ A++ +L SA + A +G+L+ Q +TQ+QE TL F K++ V + L +
Sbjct: 3 DLVFAGNKALYLVLMMSAWPIIVATVIGLLVGLFQTVTQLQEQTLPFGIKLLGVSVCLFL 62
Query: 65 SAPFIGGQISSF 76
+ + G + +F
Sbjct: 63 LSGWYGETLLAF 74
>gi|283784009|ref|YP_003363874.1| lateral flagellar export/assembly protein [Citrobacter rodentium
ICC168]
gi|282947463|emb|CBG87010.1| lateral flagellar export/assembly protein [Citrobacter rodentium
ICC168]
Length = 90
Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 31/49 (63%)
Query: 28 AMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSF 76
++ +G+L++ QA+TQI E TL+F+P++I + L + ++ Q+
Sbjct: 29 SLLVGLLVSIFQAVTQINEQTLSFLPRLIVTLVVLGVCGKWMIVQLDDL 77
>gi|66044458|ref|YP_234299.1| type III secretion protein HrcS [Pseudomonas syringae pv.
syringae B728a]
gi|63255165|gb|AAY36261.1| type III secretion protein HrcS [Pseudomonas syringae pv.
syringae B728a]
gi|330969105|gb|EGH69171.1| type III secretion protein HrcS [Pseudomonas syringae pv. aceris
str. M302273PT]
Length = 88
Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 49/83 (59%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
+ L + + M+ ++ +AP L A+ +G++ + LQAL QIQ+ TL F K+ AV +TL +
Sbjct: 2 EALALFKQGMFLVVILTAPPLAVAVLVGVVTSLLQALMQIQDQTLPFGIKLGAVGLTLAM 61
Query: 65 SAPFIGGQISSFVTLVLSRIQSS 87
+ +IG ++ F+ + I S
Sbjct: 62 TGRWIGVELIEFINMAFDLIARS 84
>gi|313610167|gb|EFR85469.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL
F2-208]
Length = 83
Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 29/47 (61%)
Query: 38 LQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSRI 84
L A+ QIQ+ +LTF+PKIIA + L I P++ ++ + S++
Sbjct: 31 LMAMMQIQDQSLTFLPKIIAFVVALFILGPWMFEHMTDLFVGIFSKL 77
>gi|167567197|ref|ZP_02360113.1| flagellar biosynthetic protein FliQ [Burkholderia oklahomensis
EO147]
gi|167574621|ref|ZP_02367495.1| flagellar biosynthetic protein FliQ [Burkholderia oklahomensis
C6786]
Length = 90
Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 42/76 (55%)
Query: 8 EIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAP 67
E+ A+ I+ A ++ + +G+++A QA TQI E TL+F+P+++A L+ +
Sbjct: 9 ELVGNAIRIIVVMVALIIAPGLVIGLVVALFQAATQINEQTLSFLPRLLATLGVLVFAGH 68
Query: 68 FIGGQISSFVTLVLSR 83
++ + + + +R
Sbjct: 69 WLVQTLMDYCVAIFTR 84
>gi|293446329|ref|ZP_06662751.1| flagellar biosynthetic protein FliQ [Escherichia coli B088]
gi|291323159|gb|EFE62587.1| flagellar biosynthetic protein FliQ [Escherichia coli B088]
Length = 89
Score = 35.0 bits (79), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 40/53 (75%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSRI 84
G++I+ LQA TQI E+TL+F+PKIIAVFI +II+ P++ + +V+ + + +
Sbjct: 32 GLIISILQAATQINEMTLSFIPKIIAVFIAIIIAGPWMLNLLLDYVSTLFTNL 84
>gi|271500420|ref|YP_003333445.1| type III secretion protein, HrpO family [Dickeya dadantii Ech586]
gi|270343975|gb|ACZ76740.1| type III secretion protein, HrpO family [Dickeya dadantii Ech586]
Length = 86
Score = 35.0 bits (79), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 49/82 (59%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
+ L + R AM ++ SAP L A+ +G+LI+ LQA+ Q+Q+ TL F K++AV + L +
Sbjct: 2 ETLTLFRQAMVLVVMLSAPPLLVAVVVGVLISLLQAVMQLQDQTLPFAVKLVAVGLVLAM 61
Query: 65 SAPFIGGQISSFVTLVLSRIQS 86
+ +IG ++ + + I+
Sbjct: 62 TGRWIGVELIQLAVMAFNMIEQ 83
>gi|170769378|ref|ZP_02903831.1| flagellar biosynthetic protein FliQ [Escherichia albertii
TW07627]
gi|170121702|gb|EDS90633.1| flagellar biosynthetic protein FliQ [Escherichia albertii
TW07627]
Length = 89
Score = 35.0 bits (79), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 33/38 (86%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
G++I+ LQA TQI E+TL+F+PKIIAVFI +II+ P++
Sbjct: 32 GLIISILQAATQINEMTLSFIPKIIAVFIAIIIAGPWM 69
>gi|12331291|emb|CAC24707.1| HrcS protein [Pseudomonas fluorescens]
Length = 88
Score = 35.0 bits (79), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 49/83 (59%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
+ L + + M+ ++ +AP L A+ +G++ + LQAL QIQ+ TL F K+ AV +TL +
Sbjct: 2 EALALFKQGMFLVVILTAPPLGVAVLVGVVTSLLQALMQIQDQTLPFGIKLGAVGLTLAL 61
Query: 65 SAPFIGGQISSFVTLVLSRIQSS 87
+ +IG ++ F+ + I S
Sbjct: 62 TGRWIGVELIQFINMAFDLIARS 84
>gi|254253709|ref|ZP_04947026.1| Type III secretory pathway component EscS [Burkholderia dolosa
AUO158]
gi|124898354|gb|EAY70197.1| Type III secretory pathway component EscS [Burkholderia dolosa
AUO158]
Length = 87
Score = 35.0 bits (79), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 3 EADVL-EIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFIT 61
E D L I + LS S PV+ A G+ I+F+QA+T +Q+ ++++ K++AV T
Sbjct: 2 ETDTLVRITSQGLLLCLSVSMPVVAVAALSGLAISFVQAITSMQDQSISYAVKLVAVVAT 61
Query: 62 LII 64
+++
Sbjct: 62 VLM 64
>gi|268592374|ref|ZP_06126595.1| surface presentation of antigens protein SpaQ [Providencia
rettgeri DSM 1131]
gi|291312160|gb|EFE52613.1| surface presentation of antigens protein SpaQ [Providencia
rettgeri DSM 1131]
Length = 90
Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 20 SSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTL 79
S+ PV+ A +G+L+ LQ +TQ+QE TL F K++AVF +L + + ++ ++ +F
Sbjct: 19 SAIPVIV-ATAVGLLVGLLQTVTQLQEQTLPFGIKLLAVFGSLFMISGWLSDKVMNFALE 77
Query: 80 VLS 82
LS
Sbjct: 78 TLS 80
>gi|17549080|ref|NP_522420.1| Hrp conserved HRCS transmembrane protein [Ralstonia solanacearum
GMI1000]
gi|83747861|ref|ZP_00944894.1| HrcS [Ralstonia solanacearum UW551]
gi|207724579|ref|YP_002254976.1| hrp protein hrcs [Ralstonia solanacearum MolK2]
gi|207739215|ref|YP_002257608.1| hrp protein hrcs [Ralstonia solanacearum IPO1609]
gi|300693805|ref|YP_003749778.1| type III secretion protein hrcs [Ralstonia solanacearum PSI07]
gi|300697460|ref|YP_003748121.1| type III secretion protein HrcS [Ralstonia solanacearum CFBP2957]
gi|6066700|emb|CAB58246.1| HrpU protein [Ralstonia solanacearum]
gi|17431331|emb|CAD18010.1| hrp conserved hrcs transmembrane protein [Ralstonia solanacearum
GMI1000]
gi|83725508|gb|EAP72653.1| HrcS [Ralstonia solanacearum UW551]
gi|206589801|emb|CAQ36762.1| hrp conserved protein hrcs [Ralstonia solanacearum MolK2]
gi|206592588|emb|CAQ59494.1| hrp conserved protein hrcs [Ralstonia solanacearum IPO1609]
gi|219566949|dbj|BAH04980.1| Hrp conserved transmembrane protein [Ralstonia solanacearum]
gi|299069225|emb|CBJ40485.1| Type III secretion protein HrcS [Ralstonia solanacearum CMR15]
gi|299074184|emb|CBJ53729.1| Type III secretion protein HrcS [Ralstonia solanacearum CFBP2957]
gi|299075842|emb|CBJ35151.1| Type III secretion protein HrcS [Ralstonia solanacearum PSI07]
gi|1097279|prf||2113360E hrpU gene
Length = 86
Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 45/81 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ ++ + A+ L S P + A G+LI+FLQA+T +Q+ +++ K+I V +
Sbjct: 1 MDYDNITRLTSTALLLCLLVSLPAVGVAAIAGLLISFLQAITSLQDSSISHGLKLIIVSL 60
Query: 61 TLIISAPFIGGQISSFVTLVL 81
++++AP+ I F ++
Sbjct: 61 VIVVAAPWGAAAILQFANSIM 81
>gi|187730771|ref|YP_001879728.1| flagellar biosynthesis protein FliQ [Shigella boydii CDC 3083-94]
gi|187427763|gb|ACD07037.1| flagellar biosynthetic protein FliQ [Shigella boydii CDC 3083-94]
Length = 89
Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 33/38 (86%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
G++I+ LQA TQI E+TL+F+PKIIAVFI +II+ P++
Sbjct: 32 GLIISILQAATQINEMTLSFIPKIIAVFIAIIIAGPWM 69
>gi|15802384|ref|NP_288410.1| flagellar biosynthesis protein FliQ [Escherichia coli O157:H7
EDL933]
gi|15831942|ref|NP_310715.1| flagellar biosynthesis protein FliQ [Escherichia coli O157:H7
str. Sakai]
gi|16129896|ref|NP_416459.1| flagellar biosynthesis protein [Escherichia coli str. K-12
substr. MG1655]
gi|24113324|ref|NP_707834.1| flagellar biosynthesis protein FliQ [Shigella flexneri 2a str.
301]
gi|26248218|ref|NP_754258.1| flagellar biosynthesis protein FliQ [Escherichia coli CFT073]
gi|30063387|ref|NP_837558.1| flagellar biosynthesis protein FliQ [Shigella flexneri 2a str.
2457T]
gi|74312489|ref|YP_310908.1| flagellar biosynthesis protein FliQ [Shigella sonnei Ss046]
gi|82543590|ref|YP_407537.1| flagellar biosynthesis protein FliQ [Shigella boydii Sb227]
gi|89108781|ref|AP_002561.1| flagellar biosynthesis protein [Escherichia coli str. K-12
substr. W3110]
gi|91211167|ref|YP_541153.1| flagellar biosynthesis protein FliQ [Escherichia coli UTI89]
gi|110642055|ref|YP_669785.1| flagellar biosynthesis protein FliQ [Escherichia coli 536]
gi|110805918|ref|YP_689438.1| flagellar biosynthesis protein FliQ [Shigella flexneri 5 str.
8401]
gi|117624089|ref|YP_853002.1| flagellar biosynthesis protein FliQ [Escherichia coli APEC O1]
gi|157157753|ref|YP_001463251.1| flagellar biosynthesis protein FliQ [Escherichia coli E24377A]
gi|157161420|ref|YP_001458738.1| flagellar biosynthesis protein FliQ [Escherichia coli HS]
gi|168751878|ref|ZP_02776900.1| flagellar biosynthetic protein FliQ [Escherichia coli O157:H7
str. EC4113]
gi|168758263|ref|ZP_02783270.1| flagellar biosynthetic protein FliQ [Escherichia coli O157:H7
str. EC4401]
gi|168764425|ref|ZP_02789432.1| flagellar biosynthetic protein FliQ [Escherichia coli O157:H7
str. EC4501]
gi|168771556|ref|ZP_02796563.1| flagellar biosynthetic protein FliQ [Escherichia coli O157:H7
str. EC4486]
gi|168777376|ref|ZP_02802383.1| flagellar biosynthetic protein FliQ [Escherichia coli O157:H7
str. EC4196]
gi|168783346|ref|ZP_02808353.1| flagellar biosynthetic protein FliQ [Escherichia coli O157:H7
str. EC4076]
gi|168790291|ref|ZP_02815298.1| flagellar biosynthetic protein FliQ [Escherichia coli O157:H7
str. EC869]
gi|168802296|ref|ZP_02827303.1| flagellar biosynthetic protein FliQ [Escherichia coli O157:H7
str. EC508]
gi|170019718|ref|YP_001724672.1| flagellar biosynthesis protein FliQ [Escherichia coli ATCC 8739]
gi|170081593|ref|YP_001730913.1| flagellar biosynthesis protein [Escherichia coli str. K-12
substr. DH10B]
gi|170681533|ref|YP_001743296.1| flagellar biosynthesis protein FliQ [Escherichia coli SMS-3-5]
gi|188495287|ref|ZP_03002557.1| flagellar biosynthetic protein FliQ [Escherichia coli 53638]
gi|191168276|ref|ZP_03030069.1| flagellar biosynthetic protein FliQ [Escherichia coli B7A]
gi|191173323|ref|ZP_03034853.1| flagellar biosynthetic protein FliQ [Escherichia coli F11]
gi|193066381|ref|ZP_03047429.1| flagellar biosynthetic protein FliQ [Escherichia coli E22]
gi|193071131|ref|ZP_03052055.1| flagellar biosynthetic protein FliQ [Escherichia coli E110019]
gi|194429935|ref|ZP_03062445.1| flagellar biosynthetic protein FliQ [Escherichia coli B171]
gi|194434954|ref|ZP_03067197.1| flagellar biosynthetic protein FliQ [Shigella dysenteriae 1012]
gi|194439595|ref|ZP_03071668.1| flagellar biosynthetic protein FliQ [Escherichia coli 101-1]
gi|195939255|ref|ZP_03084637.1| flagellar biosynthesis protein FliQ [Escherichia coli O157:H7
str. EC4024]
gi|208810716|ref|ZP_03252592.1| flagellar biosynthetic protein FliQ [Escherichia coli O157:H7
str. EC4206]
gi|208816873|ref|ZP_03257993.1| flagellar biosynthetic protein FliQ [Escherichia coli O157:H7
str. EC4045]
gi|208821456|ref|ZP_03261776.1| flagellar biosynthetic protein FliQ [Escherichia coli O157:H7
str. EC4042]
gi|209398388|ref|YP_002271066.1| flagellar biosynthetic protein FliQ [Escherichia coli O157:H7
str. EC4115]
gi|209919371|ref|YP_002293455.1| flagellar biosynthesis protein FliQ [Escherichia coli SE11]
gi|215487149|ref|YP_002329580.1| flagellar biosynthesis protein FliQ [Escherichia coli O127:H6
str. E2348/69]
gi|217328972|ref|ZP_03445053.1| flagellar biosynthetic protein FliQ [Escherichia coli O157:H7
str. TW14588]
gi|218558806|ref|YP_002391719.1| flagellar biosynthesis protein FliQ [Escherichia coli S88]
gi|218689944|ref|YP_002398156.1| flagellar biosynthesis protein FliQ [Escherichia coli ED1a]
gi|218695554|ref|YP_002403221.1| flagellar biosynthesis protein FliQ [Escherichia coli 55989]
gi|218705442|ref|YP_002412961.1| flagellar biosynthesis protein FliQ [Escherichia coli UMN026]
gi|227885622|ref|ZP_04003427.1| flagellar biosynthesis protein FliQ [Escherichia coli 83972]
gi|237705908|ref|ZP_04536389.1| flagellar biosynthetic protein FliQ [Escherichia sp. 3_2_53FAA]
gi|238901154|ref|YP_002926950.1| flagellar biosynthesis protein [Escherichia coli BW2952]
gi|253773102|ref|YP_003035933.1| flagellar biosynthesis protein FliQ [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254793599|ref|YP_003078436.1| flagellar biosynthesis protein FliQ [Escherichia coli O157:H7
str. TW14359]
gi|256022393|ref|ZP_05436258.1| flagellar biosynthesis protein FliQ [Escherichia sp. 4_1_40B]
gi|260844348|ref|YP_003222126.1| flagellar biosynthesis protein FliQ [Escherichia coli O103:H2
str. 12009]
gi|260855924|ref|YP_003229815.1| flagellar biosynthesis protein FliQ [Escherichia coli O26:H11
str. 11368]
gi|260868542|ref|YP_003234944.1| flagellar biosynthesis protein FliQ [Escherichia coli O111:H-
str. 11128]
gi|261227556|ref|ZP_05941837.1| flagellar biosynthesis protein FliQ [Escherichia coli O157:H7
str. FRIK2000]
gi|261254620|ref|ZP_05947153.1| flagellar biosynthesis protein FliQ [Escherichia coli O157:H7
str. FRIK966]
gi|291283126|ref|YP_003499944.1| hypothetical protein G2583_2400 [Escherichia coli O55:H7 str.
CB9615]
gi|293405432|ref|ZP_06649424.1| fliQ [Escherichia coli FVEC1412]
gi|293410305|ref|ZP_06653881.1| flagellar biosynthetic protein FliQ [Escherichia coli B354]
gi|293415259|ref|ZP_06657902.1| flagellar biosynthetic protein FliQ [Escherichia coli B185]
gi|298381076|ref|ZP_06990675.1| fliQ [Escherichia coli FVEC1302]
gi|300818631|ref|ZP_07098839.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 107-1]
gi|300822281|ref|ZP_07102422.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 119-7]
gi|300899206|ref|ZP_07117482.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 198-1]
gi|300904839|ref|ZP_07122665.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 84-1]
gi|300920168|ref|ZP_07136618.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 115-1]
gi|300923888|ref|ZP_07139903.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 182-1]
gi|300931162|ref|ZP_07146509.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 187-1]
gi|300940404|ref|ZP_07154989.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 21-1]
gi|300951574|ref|ZP_07165407.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 116-1]
gi|300956535|ref|ZP_07168817.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 175-1]
gi|300975536|ref|ZP_07173047.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 45-1]
gi|300994266|ref|ZP_07180818.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 200-1]
gi|301018201|ref|ZP_07182716.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 69-1]
gi|301029406|ref|ZP_07192500.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 196-1]
gi|301050690|ref|ZP_07197551.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 185-1]
gi|301304256|ref|ZP_07210371.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 124-1]
gi|301327736|ref|ZP_07220941.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 78-1]
gi|301644592|ref|ZP_07244581.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 146-1]
gi|306814228|ref|ZP_07448394.1| flagellar biosynthesis protein FliQ [Escherichia coli NC101]
gi|307312465|ref|ZP_07592099.1| flagellar biosynthetic protein FliQ [Escherichia coli W]
gi|309795944|ref|ZP_07690357.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 145-7]
gi|312967146|ref|ZP_07781364.1| flagellar biosynthetic protein FliQ [Escherichia coli 2362-75]
gi|312973834|ref|ZP_07788006.1| flagellar biosynthetic protein FliQ [Escherichia coli 1827-70]
gi|331642570|ref|ZP_08343705.1| flagellar biosynthetic protein FliQ [Escherichia coli H736]
gi|331647543|ref|ZP_08348635.1| flagellar biosynthetic protein FliQ [Escherichia coli M605]
gi|331653361|ref|ZP_08354366.1| flagellar biosynthetic protein FliQ [Escherichia coli M718]
gi|331657995|ref|ZP_08358957.1| flagellar biosynthetic protein FliQ [Escherichia coli TA206]
gi|331663445|ref|ZP_08364355.1| flagellar biosynthetic protein FliQ [Escherichia coli TA143]
gi|331668640|ref|ZP_08369488.1| flagellar biosynthetic protein FliQ [Escherichia coli TA271]
gi|331673462|ref|ZP_08374230.1| flagellar biosynthetic protein FliQ [Escherichia coli TA280]
gi|331677831|ref|ZP_08378506.1| flagellar biosynthetic protein FliQ [Escherichia coli H591]
gi|331683501|ref|ZP_08384102.1| flagellar biosynthetic protein FliQ [Escherichia coli H299]
gi|81175291|sp|P0AC09|FLIQ_ECO57 RecName: Full=Flagellar biosynthetic protein FliQ
gi|81175292|sp|P0AC08|FLIQ_ECOL6 RecName: Full=Flagellar biosynthetic protein FliQ
gi|81175293|sp|P0AC07|FLIQ_ECOLI RecName: Full=Flagellar biosynthetic protein FliQ
gi|81175294|sp|P0AC10|FLIQ_SHIFL RecName: Full=Flagellar biosynthetic protein FliQ
gi|12516056|gb|AAG56964.1|AE005417_6 flagellar biosynthesis [Escherichia coli O157:H7 str. EDL933]
gi|26108622|gb|AAN80825.1|AE016762_78 Flagellar biosynthetic protein fliQ [Escherichia coli CFT073]
gi|347244|gb|AAC36860.1| fliQ [Escherichia coli]
gi|1736615|dbj|BAA15774.1| flagellar biosynthesis protein [Escherichia coli str. K12 substr.
W3110]
gi|1788260|gb|AAC75016.1| flagellar biosynthesis protein [Escherichia coli str. K-12
substr. MG1655]
gi|13362156|dbj|BAB36111.1| putative export protein FliQ [Escherichia coli O157:H7 str.
Sakai]
gi|24052335|gb|AAN43541.1| flagellar biosynthetic protein FliQ [Shigella flexneri 2a str.
301]
gi|30041639|gb|AAP17367.1| flagellar biosynthetic protein FliQ [Shigella flexneri 2a str.
2457T]
gi|73855966|gb|AAZ88673.1| flagellar biosynthesis [Shigella sonnei Ss046]
gi|81245001|gb|ABB65709.1| flagellar biosynthesis [Shigella boydii Sb227]
gi|91072741|gb|ABE07622.1| flagellar biosynthetic protein FliQ [Escherichia coli UTI89]
gi|110343647|gb|ABG69884.1| flagellar biosynthetic protein FliQ [Escherichia coli 536]
gi|110615466|gb|ABF04133.1| flagellar biosynthetic protein FliQ [Shigella flexneri 5 str.
8401]
gi|115513213|gb|ABJ01288.1| flagellar biosynthetic protein FliQ [Escherichia coli APEC O1]
gi|157067100|gb|ABV06355.1| flagellar biosynthetic protein FliQ [Escherichia coli HS]
gi|157079783|gb|ABV19491.1| flagellar biosynthetic protein FliQ [Escherichia coli E24377A]
gi|169754646|gb|ACA77345.1| flagellar biosynthetic protein FliQ [Escherichia coli ATCC 8739]
gi|169889428|gb|ACB03135.1| flagellar biosynthesis protein [Escherichia coli str. K-12
substr. DH10B]
gi|170519251|gb|ACB17429.1| flagellar biosynthetic protein FliQ [Escherichia coli SMS-3-5]
gi|187767409|gb|EDU31253.1| flagellar biosynthetic protein FliQ [Escherichia coli O157:H7
str. EC4196]
gi|188014155|gb|EDU52277.1| flagellar biosynthetic protein FliQ [Escherichia coli O157:H7
str. EC4113]
gi|188490486|gb|EDU65589.1| flagellar biosynthetic protein FliQ [Escherichia coli 53638]
gi|188999287|gb|EDU68273.1| flagellar biosynthetic protein FliQ [Escherichia coli O157:H7
str. EC4076]
gi|189354877|gb|EDU73296.1| flagellar biosynthetic protein FliQ [Escherichia coli O157:H7
str. EC4401]
gi|189359735|gb|EDU78154.1| flagellar biosynthetic protein FliQ [Escherichia coli O157:H7
str. EC4486]
gi|189365574|gb|EDU83990.1| flagellar biosynthetic protein FliQ [Escherichia coli O157:H7
str. EC4501]
gi|189370190|gb|EDU88606.1| flagellar biosynthetic protein FliQ [Escherichia coli O157:H7
str. EC869]
gi|189375705|gb|EDU94121.1| flagellar biosynthetic protein FliQ [Escherichia coli O157:H7
str. EC508]
gi|190901648|gb|EDV61404.1| flagellar biosynthetic protein FliQ [Escherichia coli B7A]
gi|190906440|gb|EDV66049.1| flagellar biosynthetic protein FliQ [Escherichia coli F11]
gi|192925966|gb|EDV80612.1| flagellar biosynthetic protein FliQ [Escherichia coli E22]
gi|192955526|gb|EDV86005.1| flagellar biosynthetic protein FliQ [Escherichia coli E110019]
gi|194412024|gb|EDX28336.1| flagellar biosynthetic protein FliQ [Escherichia coli B171]
gi|194416789|gb|EDX32915.1| flagellar biosynthetic protein FliQ [Shigella dysenteriae 1012]
gi|194421504|gb|EDX37518.1| flagellar biosynthetic protein FliQ [Escherichia coli 101-1]
gi|208725232|gb|EDZ74939.1| flagellar biosynthetic protein FliQ [Escherichia coli O157:H7
str. EC4206]
gi|208731216|gb|EDZ79905.1| flagellar biosynthetic protein FliQ [Escherichia coli O157:H7
str. EC4045]
gi|208741579|gb|EDZ89261.1| flagellar biosynthetic protein FliQ [Escherichia coli O157:H7
str. EC4042]
gi|209159788|gb|ACI37221.1| flagellar biosynthetic protein FliQ [Escherichia coli O157:H7
str. EC4115]
gi|209766778|gb|ACI81701.1| putative export protein FliQ [Escherichia coli]
gi|209766780|gb|ACI81702.1| putative export protein FliQ [Escherichia coli]
gi|209766782|gb|ACI81703.1| putative export protein FliQ [Escherichia coli]
gi|209766784|gb|ACI81704.1| putative export protein FliQ [Escherichia coli]
gi|209766786|gb|ACI81705.1| putative export protein FliQ [Escherichia coli]
gi|209912630|dbj|BAG77704.1| flagellar biosynthetic protein FliQ [Escherichia coli SE11]
gi|215265221|emb|CAS09611.1| flagellar biosynthesis protein [Escherichia coli O127:H6 str.
E2348/69]
gi|217318319|gb|EEC26746.1| flagellar biosynthetic protein FliQ [Escherichia coli O157:H7
str. TW14588]
gi|218352286|emb|CAU98043.1| flagellar biosynthesis protein [Escherichia coli 55989]
gi|218365575|emb|CAR03302.1| flagellar biosynthesis protein [Escherichia coli S88]
gi|218427508|emb|CAR08403.2| flagellar biosynthesis protein [Escherichia coli ED1a]
gi|218432539|emb|CAR13432.1| flagellar biosynthesis protein [Escherichia coli UMN026]
gi|222033688|emb|CAP76429.1| flagellar biosynthetic protein fliQ [Escherichia coli LF82]
gi|226900665|gb|EEH86924.1| flagellar biosynthetic protein FliQ [Escherichia sp. 3_2_53FAA]
gi|227837195|gb|EEJ47661.1| flagellar biosynthesis protein FliQ [Escherichia coli 83972]
gi|238861099|gb|ACR63097.1| flagellar biosynthesis protein [Escherichia coli BW2952]
gi|253324146|gb|ACT28748.1| flagellar biosynthetic protein FliQ [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254592999|gb|ACT72360.1| flagellar biosynthesis protein [Escherichia coli O157:H7 str.
TW14359]
gi|257754573|dbj|BAI26075.1| flagellar biosynthesis protein FliQ [Escherichia coli O26:H11
str. 11368]
gi|257759495|dbj|BAI30992.1| flagellar biosynthesis protein FliQ [Escherichia coli O103:H2
str. 12009]
gi|257764898|dbj|BAI36393.1| flagellar biosynthesis protein FliQ [Escherichia coli O111:H-
str. 11128]
gi|260448938|gb|ACX39360.1| flagellar biosynthetic protein FliQ [Escherichia coli DH1]
gi|281179011|dbj|BAI55341.1| flagellar biosynthetic protein FliQ [Escherichia coli SE15]
gi|281601388|gb|ADA74372.1| Flagellar biosynthetic protein fliQ [Shigella flexneri 2002017]
gi|284921857|emb|CBG34932.1| flagellar biosynthesis protein FliQ [Escherichia coli 042]
gi|290762999|gb|ADD56960.1| hypothetical protein G2583_2400 [Escherichia coli O55:H7 str.
CB9615]
gi|291427640|gb|EFF00667.1| fliQ [Escherichia coli FVEC1412]
gi|291432907|gb|EFF05886.1| flagellar biosynthetic protein FliQ [Escherichia coli B185]
gi|291470773|gb|EFF13257.1| flagellar biosynthetic protein FliQ [Escherichia coli B354]
gi|294494041|gb|ADE92797.1| flagellar biosynthetic protein FliQ [Escherichia coli IHE3034]
gi|298278518|gb|EFI20032.1| fliQ [Escherichia coli FVEC1302]
gi|299877710|gb|EFI85921.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 196-1]
gi|300297613|gb|EFJ53998.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 185-1]
gi|300304931|gb|EFJ59451.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 200-1]
gi|300316635|gb|EFJ66419.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 175-1]
gi|300357187|gb|EFJ73057.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 198-1]
gi|300399788|gb|EFJ83326.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 69-1]
gi|300403266|gb|EFJ86804.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 84-1]
gi|300410305|gb|EFJ93843.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 45-1]
gi|300412825|gb|EFJ96135.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 115-1]
gi|300419851|gb|EFK03162.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 182-1]
gi|300449201|gb|EFK12821.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 116-1]
gi|300454798|gb|EFK18291.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 21-1]
gi|300461019|gb|EFK24512.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 187-1]
gi|300525164|gb|EFK46233.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 119-7]
gi|300528803|gb|EFK49865.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 107-1]
gi|300840513|gb|EFK68273.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 124-1]
gi|300845736|gb|EFK73496.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 78-1]
gi|301077067|gb|EFK91873.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 146-1]
gi|305852387|gb|EFM52838.1| flagellar biosynthesis protein FliQ [Escherichia coli NC101]
gi|306907636|gb|EFN38139.1| flagellar biosynthetic protein FliQ [Escherichia coli W]
gi|307553962|gb|ADN46737.1| flagellar biosynthetic protein FliQ [Escherichia coli ABU 83972]
gi|307626575|gb|ADN70879.1| flagellar biosynthesis protein FliQ [Escherichia coli UM146]
gi|308120394|gb|EFO57656.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 145-7]
gi|309702238|emb|CBJ01555.1| flagellar biosynthesis protein FliQ [Escherichia coli ETEC
H10407]
gi|310332429|gb|EFP99664.1| flagellar biosynthetic protein FliQ [Escherichia coli 1827-70]
gi|312288610|gb|EFR16512.1| flagellar biosynthetic protein FliQ [Escherichia coli 2362-75]
gi|312946542|gb|ADR27369.1| flagellar biosynthesis protein FliQ [Escherichia coli O83:H1 str.
NRG 857C]
gi|313650171|gb|EFS14584.1| flagellar biosynthetic protein FliQ [Shigella flexneri 2a str.
2457T]
gi|315061249|gb|ADT75576.1| flagellar biosynthesis protein [Escherichia coli W]
gi|315136586|dbj|BAJ43745.1| hypothetical protein ECDH1ME8569_1889 [Escherichia coli DH1]
gi|315257219|gb|EFU37187.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 85-1]
gi|315286655|gb|EFU46088.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 110-3]
gi|315290266|gb|EFU49644.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 153-1]
gi|315296483|gb|EFU55780.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 16-3]
gi|320182734|gb|EFW57618.1| Flagellar biosynthesis protein FliQ [Shigella boydii ATCC 9905]
gi|320184487|gb|EFW59291.1| Flagellar biosynthesis protein FliQ [Shigella flexneri CDC
796-83]
gi|320191923|gb|EFW66570.1| Flagellar biosynthesis protein FliQ [Escherichia coli O157:H7
str. EC1212]
gi|320194338|gb|EFW68969.1| Flagellar biosynthesis protein FliQ [Escherichia coli WV_060327]
gi|320198640|gb|EFW73240.1| Flagellar biosynthesis protein FliQ [Escherichia coli EC4100B]
gi|320641797|gb|EFX11185.1| flagellar biosynthesis protein FliQ [Escherichia coli O157:H7
str. G5101]
gi|320647156|gb|EFX15989.1| flagellar biosynthesis protein FliQ [Escherichia coli O157:H-
str. 493-89]
gi|320652440|gb|EFX20738.1| flagellar biosynthesis protein FliQ [Escherichia coli O157:H-
str. H 2687]
gi|320658042|gb|EFX25804.1| flagellar biosynthesis protein FliQ [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320658614|gb|EFX26308.1| flagellar biosynthesis protein FliQ [Escherichia coli O55:H7 str.
USDA 5905]
gi|320668512|gb|EFX35339.1| flagellar biosynthesis protein FliQ [Escherichia coli O157:H7
str. LSU-61]
gi|323152720|gb|EFZ38992.1| flagellar biosynthetic protein FliQ [Escherichia coli EPECa14]
gi|323158572|gb|EFZ44586.1| flagellar biosynthetic protein FliQ [Escherichia coli E128010]
gi|323174671|gb|EFZ60291.1| flagellar biosynthetic protein FliQ [Escherichia coli LT-68]
gi|323180798|gb|EFZ66338.1| flagellar biosynthetic protein FliQ [Escherichia coli 1180]
gi|323186705|gb|EFZ72027.1| flagellar biosynthetic protein FliQ [Escherichia coli RN587/1]
gi|323378174|gb|ADX50442.1| flagellar biosynthetic protein FliQ [Escherichia coli KO11]
gi|323937219|gb|EGB33499.1| flagellar biosynthetic protein FliQ [Escherichia coli E1520]
gi|323940392|gb|EGB36583.1| flagellar biosynthetic protein FliQ [Escherichia coli E482]
gi|323948347|gb|EGB44334.1| flagellar biosynthetic protein FliQ [Escherichia coli H120]
gi|323952442|gb|EGB48315.1| flagellar biosynthetic protein FliQ [Escherichia coli H252]
gi|323956345|gb|EGB52088.1| flagellar biosynthetic protein FliQ [Escherichia coli H263]
gi|323961993|gb|EGB57592.1| flagellar biosynthetic protein FliQ [Escherichia coli H489]
gi|323968365|gb|EGB63772.1| flagellar biosynthetic protein FliQ [Escherichia coli M863]
gi|323972751|gb|EGB67951.1| flagellar biosynthetic protein FliQ [Escherichia coli TA007]
gi|323977870|gb|EGB72956.1| flagellar biosynthetic protein FliQ [Escherichia coli TW10509]
gi|324005852|gb|EGB75071.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 57-2]
gi|324013504|gb|EGB82723.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 60-1]
gi|324018858|gb|EGB88077.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 117-3]
gi|324118998|gb|EGC12887.1| flagellar biosynthetic protein FliQ [Escherichia coli E1167]
gi|326342360|gb|EGD66141.1| Flagellar biosynthesis protein FliQ [Escherichia coli O157:H7
str. 1044]
gi|326344864|gb|EGD68611.1| Flagellar biosynthesis protein FliQ [Escherichia coli O157:H7
str. 1125]
gi|327253081|gb|EGE64735.1| flagellar biosynthetic protein FliQ [Escherichia coli STEC_7v]
gi|330911755|gb|EGH40265.1| flagellar biosynthesis protein FliQ [Escherichia coli AA86]
gi|331039368|gb|EGI11588.1| flagellar biosynthetic protein FliQ [Escherichia coli H736]
gi|331043267|gb|EGI15405.1| flagellar biosynthetic protein FliQ [Escherichia coli M605]
gi|331049459|gb|EGI21531.1| flagellar biosynthetic protein FliQ [Escherichia coli M718]
gi|331056243|gb|EGI28252.1| flagellar biosynthetic protein FliQ [Escherichia coli TA206]
gi|331059244|gb|EGI31221.1| flagellar biosynthetic protein FliQ [Escherichia coli TA143]
gi|331063834|gb|EGI35745.1| flagellar biosynthetic protein FliQ [Escherichia coli TA271]
gi|331069660|gb|EGI41047.1| flagellar biosynthetic protein FliQ [Escherichia coli TA280]
gi|331074291|gb|EGI45611.1| flagellar biosynthetic protein FliQ [Escherichia coli H591]
gi|331079716|gb|EGI50913.1| flagellar biosynthetic protein FliQ [Escherichia coli H299]
gi|332093094|gb|EGI98158.1| flagellar biosynthetic protein FliQ [Shigella boydii 5216-82]
gi|332096903|gb|EGJ01892.1| flagellar biosynthetic protein FliQ [Shigella boydii 3594-74]
gi|332343675|gb|AEE57009.1| flagellar biosynthetic protein FliQ [Escherichia coli UMNK88]
gi|332756105|gb|EGJ86458.1| flagellar biosynthetic protein FliQ [Shigella flexneri 4343-70]
gi|332757329|gb|EGJ87666.1| flagellar biosynthetic protein FliQ [Shigella flexneri 2747-71]
gi|332757515|gb|EGJ87850.1| flagellar biosynthetic protein FliQ [Shigella flexneri K-671]
gi|332766687|gb|EGJ96891.1| flagellar biosynthetic protein FliQ [Shigella flexneri 2930-71]
gi|333003045|gb|EGK22599.1| flagellar biosynthetic protein FliQ [Shigella flexneri VA-6]
gi|333003261|gb|EGK22807.1| flagellar biosynthetic protein FliQ [Shigella flexneri K-218]
gi|333004054|gb|EGK23588.1| flagellar biosynthetic protein FliQ [Shigella flexneri K-272]
gi|333017622|gb|EGK36934.1| flagellar biosynthetic protein FliQ [Shigella flexneri K-304]
gi|333017827|gb|EGK37134.1| flagellar biosynthetic protein FliQ [Shigella flexneri K-227]
Length = 89
Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 33/38 (86%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
G++I+ LQA TQI E+TL+F+PKIIAVFI +II+ P++
Sbjct: 32 GLIISILQAATQINEMTLSFIPKIIAVFIAIIIAGPWM 69
>gi|307138616|ref|ZP_07497972.1| flagellar biosynthesis protein FliQ [Escherichia coli H736]
gi|323168930|gb|EFZ54610.1| flagellar biosynthetic protein FliQ [Shigella sonnei 53G]
gi|323183933|gb|EFZ69320.1| flagellar biosynthetic protein FliQ [Escherichia coli 1357]
gi|332095493|gb|EGJ00509.1| flagellar biosynthetic protein FliQ [Shigella dysenteriae 155-74]
Length = 83
Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 33/38 (86%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
G++I+ LQA TQI E+TL+F+PKIIAVFI +II+ P++
Sbjct: 26 GLIISILQAATQINEMTLSFIPKIIAVFIAIIIAGPWM 63
>gi|188992475|ref|YP_001904485.1| hypothetical protein xccb100_3080 [Xanthomonas campestris pv.
campestris str. B100]
gi|325917010|ref|ZP_08179249.1| HrcS protein [Xanthomonas vesicatoria ATCC 35937]
gi|325921930|ref|ZP_08183741.1| HrcS protein [Xanthomonas gardneri ATCC 19865]
gi|167734235|emb|CAP52443.1| putative membrane protein [Xanthomonas campestris pv. campestris]
gi|325536761|gb|EGD08518.1| HrcS protein [Xanthomonas vesicatoria ATCC 35937]
gi|325547632|gb|EGD18675.1| HrcS protein [Xanthomonas gardneri ATCC 19865]
Length = 86
Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ D++ A+ L S PV+ A G+LIAF+QA+ +Q+ +++F K++ V
Sbjct: 1 MDHDDLVRFTSEALLLCLKVSLPVVGVAAVAGLLIAFIQAVMSLQDASISFALKLVVVVA 60
Query: 61 TLIISAPFIGGQISSF 76
+ ++AP+ I F
Sbjct: 61 AIAVTAPWGASAIMQF 76
>gi|268589971|ref|ZP_06124192.1| flagellar biosynthetic protein FliQ [Providencia rettgeri DSM
1131]
gi|291314688|gb|EFE55141.1| flagellar biosynthetic protein FliQ [Providencia rettgeri DSM
1131]
Length = 89
Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 37/51 (72%)
Query: 34 LIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSRI 84
+I+ LQA TQ+ E+TL+F+PKI++V +II+ P++ ++ ++ +LS +
Sbjct: 34 IISLLQAATQVNEMTLSFIPKILSVISVIIIAGPWMLNLLTDYMRSLLSNL 84
>gi|218699490|ref|YP_002407119.1| flagellar biosynthesis protein FliQ [Escherichia coli IAI39]
gi|218369476|emb|CAR17241.1| flagellar biosynthesis protein [Escherichia coli IAI39]
Length = 89
Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 33/38 (86%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
G++I+ LQA TQI E+TL+F+PKIIAVFI +II+ P++
Sbjct: 32 GLIISILQAATQINEMTLSFIPKIIAVFIAIIIAGPWM 69
>gi|238898598|ref|YP_002924279.1| type III needle complex export protein [Candidatus Hamiltonella
defensa 5AT (Acyrthosiphon pisum)]
gi|75906095|gb|ABA29438.1| putative type III secretion system protein [Candidatus
Hamiltonella defensa]
gi|229466357|gb|ACQ68131.1| type III needle complex export protein [Candidatus Hamiltonella
defensa 5AT (Acyrthosiphon pisum)]
Length = 86
Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN D++ A++ IL+ SA + A +G++I +Q +TQ+QE TL F K+++V +
Sbjct: 1 MN--DLVFAGNKALYLILTLSAIPVAVATAVGLIIGLIQTVTQLQEQTLPFGIKLLSVSL 58
Query: 61 TLIISAPFIGGQISSF 76
L + A + G + ++
Sbjct: 59 CLFLLAGWYGDTLLAY 74
>gi|321399654|emb|CBJ44656.1| putative type III secretion system protein HrcS [Pseudomonas sp.
MTR-J5-327]
Length = 88
Score = 35.0 bits (79), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 49/83 (59%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
+ LE+ + M+ + +AP L A+ +G+L + +QAL QIQ+ TL F K++AV +TL
Sbjct: 2 EALELFKQGMYLAVILTAPPLLVAVLVGVLTSLVQALMQIQDQTLPFGIKLVAVGVTLAA 61
Query: 65 SAPFIGGQISSFVTLVLSRIQSS 87
+ +IG ++ F+ + I +
Sbjct: 62 TGRWIGVELILFINMAFDLIART 84
>gi|315639269|ref|ZP_07894431.1| flagellar biosynthetic protein FliQ [Campylobacter upsaliensis
JV21]
gi|315480595|gb|EFU71237.1| flagellar biosynthetic protein FliQ [Campylobacter upsaliensis
JV21]
Length = 89
Score = 35.0 bits (79), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 36/55 (65%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSRIQS 86
G++I+ QA TQI E+TL+FVPKII V + +I P++ + F +L++I +
Sbjct: 32 GLIISIFQATTQINEMTLSFVPKIILVVVVIIFLMPWMTSTMIDFTANILNQIPT 86
>gi|289678000|ref|ZP_06498890.1| type III secretion component protein HrcS [Pseudomonas syringae
pv. syringae FF5]
gi|818892|gb|AAB05076.1| HrpO [Pseudomonas syringae pv. syringae]
gi|51587247|emb|CAE53640.1| putative HrcS [Pseudomonas syringae pv. syringae]
gi|148562541|gb|ABQ88360.1| HrcS [Pseudomonas syringae pv. syringae]
gi|330937036|gb|EGH41124.1| type III secretion component protein HrcS [Pseudomonas syringae
pv. pisi str. 1704B]
gi|330950825|gb|EGH51085.1| type III secretion component protein HrcS [Pseudomonas syringae
Cit 7]
gi|330975863|gb|EGH75929.1| type III secretion component protein HrcS [Pseudomonas syringae
pv. aptata str. DSM 50252]
Length = 88
Score = 35.0 bits (79), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 49/83 (59%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
+ L + + M+ ++ +AP L A+ +G++ + LQAL QIQ+ TL F K+ AV +TL +
Sbjct: 2 EALALFKQGMFLVVILTAPPLAVAVLVGVVTSLLQALMQIQDQTLPFGIKLGAVGLTLAM 61
Query: 65 SAPFIGGQISSFVTLVLSRIQSS 87
+ +IG ++ F+ + I S
Sbjct: 62 TGRWIGVELIQFINMAFDLIARS 84
>gi|57505303|ref|ZP_00371232.1| flagellar biosynthetic protein FliQ [Campylobacter upsaliensis
RM3195]
gi|57016439|gb|EAL53224.1| flagellar biosynthetic protein FliQ [Campylobacter upsaliensis
RM3195]
Length = 89
Score = 35.0 bits (79), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 36/55 (65%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSRIQS 86
G++I+ QA TQI E+TL+FVPKII V + +I P++ + F +L++I +
Sbjct: 32 GLIISIFQATTQINEMTLSFVPKIILVVVIIIFLMPWMTSTMIDFTANILNQIPT 86
>gi|16799760|ref|NP_470028.1| flagellar biosynthesis protein FliQ [Listeria innocua Clip11262]
gi|217965225|ref|YP_002350903.1| flagellar biosynthesis protein [Listeria monocytogenes HCC23]
gi|254830332|ref|ZP_05234987.1| flagellar biosynthesis protein FliQ [Listeria monocytogenes
10403S]
gi|289433955|ref|YP_003463827.1| flagellar biosynthetic protein FliQ [Listeria seeligeri serovar
1/2b str. SLCC3954]
gi|290892877|ref|ZP_06555868.1| flagellar biosynthesis protein FliQ [Listeria monocytogenes FSL
J2-071]
gi|315281328|ref|ZP_07869976.1| flagellar biosynthesis protein FliQ [Listeria marthii FSL S4-120]
gi|315301907|ref|ZP_07872920.1| flagellar biosynthesis protein FliQ [Listeria ivanovii FSL
F6-596]
gi|16413137|emb|CAC95917.1| lin0685 [Listeria innocua Clip11262]
gi|217334495|gb|ACK40289.1| flagellar biosynthesis protein [Listeria monocytogenes HCC23]
gi|289170199|emb|CBH26739.1| flagellar biosynthetic protein FliQ [Listeria seeligeri serovar
1/2b str. SLCC3954]
gi|290557689|gb|EFD91212.1| flagellar biosynthesis protein FliQ [Listeria monocytogenes FSL
J2-071]
gi|307570216|emb|CAR83395.1| flagellar biosynthetic protein [Listeria monocytogenes L99]
gi|313615026|gb|EFR88522.1| flagellar biosynthesis protein FliQ [Listeria marthii FSL S4-120]
gi|313620097|gb|EFR91602.1| flagellar biosynthesis protein FliQ [Listeria innocua FSL S4-378]
gi|313624919|gb|EFR94827.1| flagellar biosynthesis protein FliQ [Listeria innocua FSL J1-023]
gi|313629723|gb|EFR97843.1| flagellar biosynthesis protein FliQ [Listeria ivanovii FSL
F6-596]
gi|313634414|gb|EFS01001.1| flagellar biosynthesis protein FliQ [Listeria seeligeri FSL
N1-067]
gi|313639092|gb|EFS04068.1| flagellar biosynthesis protein FliQ [Listeria seeligeri FSL
S4-171]
Length = 90
Score = 35.0 bits (79), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 29/47 (61%)
Query: 38 LQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSRI 84
L A+ QIQ+ +LTF+PKIIA + L I P++ ++ + S++
Sbjct: 38 LMAMMQIQDQSLTFLPKIIAFVVALFILGPWMFEHMTDLFVGIFSKL 84
>gi|85711031|ref|ZP_01042091.1| Flagellar biosynthesis protein FliQ [Idiomarina baltica OS145]
gi|85694944|gb|EAQ32882.1| Flagellar biosynthesis protein FliQ [Idiomarina baltica OS145]
Length = 89
Score = 35.0 bits (79), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 33/57 (57%)
Query: 28 AMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSRI 84
++ +G+++A QA T I E TL+F+P+++ + + FI G + F + +RI
Sbjct: 28 SLLVGLMVAVFQAATSINEQTLSFLPRLLVTLAVIGLGGHFIVGLLMDFTIEMYNRI 84
>gi|292488068|ref|YP_003530945.1| surface presentation of antigens protein spaQ [Erwinia amylovora
CFBP1430]
gi|292899279|ref|YP_003538648.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
gi|291199127|emb|CBJ46241.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
gi|291553492|emb|CBA20537.1| Surface presentation of antigens protein spaQ [Erwinia amylovora
CFBP1430]
gi|312172196|emb|CBX80453.1| Surface presentation of antigens protein spaQ [Erwinia amylovora
ATCC BAA-2158]
Length = 84
Score = 34.7 bits (78), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 5 DVLEIARAAMWTILSSSA-PVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLI 63
+ L I+ AA+ +L +A PV F+ + +GI++ Q + QIQE TL F K++AVF ++
Sbjct: 3 NTLFISNAALVVVLKLTAVPVAFATL-VGIVVGLFQTIMQIQEQTLPFGLKMLAVFASIF 61
Query: 64 ISAPFIGGQISSFVTLVLS 82
+ + ++ +F S
Sbjct: 62 MLIEWFSAEMLNFANQAFS 80
>gi|188590018|ref|YP_001920218.1| flagellar biosynthetic protein FliQ [Clostridium botulinum E3
str. Alaska E43]
gi|251779783|ref|ZP_04822703.1| flagellar biosynthetic protein FliQ [Clostridium botulinum E1
str. 'BoNT E Beluga']
gi|188500299|gb|ACD53435.1| flagellar biosynthetic protein FliQ [Clostridium botulinum E3
str. Alaska E43]
gi|243084098|gb|EES49988.1| flagellar biosynthetic protein FliQ [Clostridium botulinum E1
str. 'BoNT E Beluga']
Length = 89
Score = 34.7 bits (78), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 30/37 (81%)
Query: 21 SAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIA 57
+AP+L + +G+LI+ +QA TQIQE TLTFVPK+IA
Sbjct: 21 AAPILLVVLIVGLLISIIQATTQIQEQTLTFVPKLIA 57
>gi|33592491|ref|NP_880135.1| flagellar biosynthetic protein FliQ [Bordetella pertussis Tohama
I]
gi|33596148|ref|NP_883791.1| flagellar biosynthetic protein FliQ [Bordetella parapertussis
12822]
gi|33601554|ref|NP_889114.1| flagellar biosynthetic protein FliQ [Bordetella bronchiseptica
RB50]
gi|33572137|emb|CAE41680.1| flagellar biosynthetic protein FliQ [Bordetella pertussis Tohama
I]
gi|33573151|emb|CAE36801.1| flagellar biosynthetic protein FliQ [Bordetella parapertussis]
gi|33575990|emb|CAE33070.1| flagellar biosynthetic protein FliQ [Bordetella bronchiseptica
RB50]
gi|332381909|gb|AEE66756.1| flagellar biosynthetic protein FliQ [Bordetella pertussis CS]
Length = 89
Score = 34.7 bits (78), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 25/30 (83%)
Query: 29 MFLGILIAFLQALTQIQEVTLTFVPKIIAV 58
+ +G++I+ QA TQI E+TL+F+PK++A+
Sbjct: 29 LIVGLVISIFQAATQINEMTLSFIPKLLAM 58
>gi|187934309|ref|YP_001885057.1| flagellar biosynthetic protein FliQ [Clostridium botulinum B str.
Eklund 17B]
gi|187722462|gb|ACD23683.1| flagellar biosynthetic protein FliQ [Clostridium botulinum B str.
Eklund 17B]
Length = 89
Score = 34.7 bits (78), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 30/37 (81%)
Query: 21 SAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIA 57
+AP+L + +G+LI+ +QA TQIQE TLTFVPK+IA
Sbjct: 21 AAPILLVVLIVGLLISIIQATTQIQEQTLTFVPKLIA 57
>gi|829081|dbj|BAA09163.1| ORF23 [Shigella sonnei]
Length = 80
Score = 34.7 bits (78), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%)
Query: 28 AMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSRIQSS 87
A +G+ I LQ +TQ+QE TL F K+I V I+L++ + + G + SF ++ I+S
Sbjct: 20 ATVIGLSIGLLQTVTQLQEQTLPFGIKLIGVSISLLLLSGWYGEVLLSFCHEIMFLIKSG 79
>gi|225871937|ref|YP_002753391.1| flagellar biosynthetic protein FliQ [Acidobacterium capsulatum
ATCC 51196]
gi|225792083|gb|ACO32173.1| flagellar biosynthetic protein FliQ [Acidobacterium capsulatum
ATCC 51196]
Length = 91
Score = 34.7 bits (78), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 32/54 (59%)
Query: 35 IAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSRIQSSL 88
++ LQ LT IQ+ T++ VP+++A + L++ AP++ ++ + + S L
Sbjct: 35 LSLLQTLTSIQDQTISTVPRLLATTVVLLVGAPWLLRHLAGYTLELFSNFHRYL 88
>gi|126175117|ref|YP_001051266.1| flagellar biosynthetic protein FliQ [Shewanella baltica OS155]
gi|153001441|ref|YP_001367122.1| flagellar biosynthetic protein FliQ [Shewanella baltica OS185]
gi|160876166|ref|YP_001555482.1| flagellar biosynthetic protein FliQ [Shewanella baltica OS195]
gi|304409948|ref|ZP_07391567.1| flagellar biosynthetic protein FliQ [Shewanella baltica OS183]
gi|307302339|ref|ZP_07582097.1| flagellar biosynthetic protein FliQ [Shewanella baltica BA175]
gi|125998322|gb|ABN62397.1| flagellar biosynthetic protein FliQ [Shewanella baltica OS155]
gi|151366059|gb|ABS09059.1| flagellar biosynthetic protein FliQ [Shewanella baltica OS185]
gi|160861688|gb|ABX50222.1| flagellar biosynthetic protein FliQ [Shewanella baltica OS195]
gi|304351357|gb|EFM15756.1| flagellar biosynthetic protein FliQ [Shewanella baltica OS183]
gi|306914377|gb|EFN44798.1| flagellar biosynthetic protein FliQ [Shewanella baltica BA175]
gi|315268362|gb|ADT95215.1| flagellar biosynthetic protein FliQ [Shewanella baltica OS678]
Length = 89
Score = 34.7 bits (78), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 46/84 (54%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ +++I R A+ I+ + ++ + +G+++A QA T I E TL+F+P+++
Sbjct: 1 MSPEALIDIFREALAVIVMMVSAIVLPGLGIGLIVAVFQAATSINEQTLSFLPRLLVTLF 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
L+ ++ + F +++RI
Sbjct: 61 GLMFMGHWLVETLMDFFVEMVNRI 84
>gi|308048763|ref|YP_003912329.1| flagellar biosynthetic protein FliQ [Ferrimonas balearica DSM
9799]
gi|307630953|gb|ADN75255.1| flagellar biosynthetic protein FliQ [Ferrimonas balearica DSM
9799]
Length = 89
Score = 34.7 bits (78), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 35/56 (62%)
Query: 8 EIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLI 63
+I R A+ I+ + ++ + +G+++A QA T I E TL+F+P+++ +T++
Sbjct: 8 DIFRHALQVIVMMVSAIIVPGLVVGLIVAVFQAATSINEQTLSFLPRLLVTLVTMM 63
>gi|255027835|ref|ZP_05299821.1| flagellar biosynthesis protein FliQ [Listeria monocytogenes FSL
J2-003]
Length = 87
Score = 34.7 bits (78), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 29/47 (61%)
Query: 38 LQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSRI 84
L A+ QIQ+ +LTF+PKI+A + L I P++ ++ + S++
Sbjct: 38 LMAMMQIQDQSLTFLPKIVAFVVALFILGPWMFEHMTDLFVGIFSKL 84
>gi|119947196|ref|YP_944876.1| flagellar biosynthetic protein FliQ [Psychromonas ingrahamii 37]
gi|119865800|gb|ABM05277.1| flagellar biosynthetic protein FliQ [Psychromonas ingrahamii 37]
Length = 89
Score = 34.7 bits (78), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 34/54 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPK 54
M+ V+ + ++W I+ A ++ ++ +G+++A QA TQ+ E TL+F+P+
Sbjct: 1 MSPEFVVSLLSQSIWLIIKFVAVLVLPSLVVGLIVAVFQAATQVNEQTLSFLPR 54
>gi|170725984|ref|YP_001760010.1| flagellar biosynthetic protein FliQ [Shewanella woodyi ATCC
51908]
gi|169811331|gb|ACA85915.1| flagellar biosynthetic protein FliQ [Shewanella woodyi ATCC
51908]
Length = 89
Score = 34.7 bits (78), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 38/63 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ +++I R A+ I++ + ++ + +G+++A QA T I E TL+F+P+++
Sbjct: 1 MSPESLVDIFREALSVIVTIVSLIILPGLVIGLIVAVFQAATSINEQTLSFLPRLLTTLF 60
Query: 61 TLI 63
L+
Sbjct: 61 ALM 63
>gi|259908637|ref|YP_002648993.1| Type III secretion apparatus [Erwinia pyrifoliae Ep1/96]
gi|224964259|emb|CAX55766.1| Type III secretion apparatus [Erwinia pyrifoliae Ep1/96]
gi|283478609|emb|CAY74525.1| Surface presentation of antigens protein spaQ [Erwinia pyrifoliae
DSM 12163]
Length = 84
Score = 34.3 bits (77), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 5 DVLEIARAAMWTILSSSA-PVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLI 63
+ L I+ AA+ +L +A P+ F+ + +GI++ Q + QIQE TL F K++AVF ++
Sbjct: 3 NTLFISNAALVVVLKLTAVPIAFATL-VGIIVGLFQTIMQIQEQTLPFGLKMLAVFASIF 61
Query: 64 ISAPFIGGQISSFVTLVLS 82
+ + ++ +F S
Sbjct: 62 MLIEWFSAEMLNFANQAFS 80
>gi|16802719|ref|NP_464204.1| flagellar biosynthesis protein FliQ [Listeria monocytogenes
EGD-e]
gi|46906928|ref|YP_013317.1| flagellar biosynthesis protein FliQ [Listeria monocytogenes
serotype 4b str. F2365]
gi|47091640|ref|ZP_00229436.1| flagellar biosynthetic protein FliQ [Listeria monocytogenes str.
4b H7858]
gi|47095242|ref|ZP_00232853.1| flagellar biosynthetic protein FliQ [Listeria monocytogenes str.
1/2a F6854]
gi|116872066|ref|YP_848847.1| flagellar biosynthesis protein FliQ [Listeria welshimeri serovar
6b str. SLCC5334]
gi|224498760|ref|ZP_03667109.1| flagellar biosynthesis protein FliQ [Listeria monocytogenes
Finland 1988]
gi|224502018|ref|ZP_03670325.1| flagellar biosynthesis protein FliQ [Listeria monocytogenes FSL
R2-561]
gi|226223308|ref|YP_002757415.1| flagellar biosynthesis protein FliQ [Listeria monocytogenes
Clip81459]
gi|254824043|ref|ZP_05229044.1| flagellar biosynthetic protein FliQ [Listeria monocytogenes FSL
J1-194]
gi|254829334|ref|ZP_05234021.1| flagellar biosynthetic protein FliQ [Listeria monocytogenes FSL
N3-165]
gi|254853118|ref|ZP_05242466.1| flagellar biosynthetic protein FliQ [Listeria monocytogenes FSL
R2-503]
gi|254900087|ref|ZP_05260011.1| flagellar biosynthesis protein FliQ [Listeria monocytogenes
J0161]
gi|254911360|ref|ZP_05261372.1| flagellar biosynthesis protein FliQ [Listeria monocytogenes
J2818]
gi|254932043|ref|ZP_05265402.1| flagellar biosynthetic protein FliQ [Listeria monocytogenes
HPB2262]
gi|254935687|ref|ZP_05267384.1| flagellar biosynthetic protein FliQ [Listeria monocytogenes
F6900]
gi|254992442|ref|ZP_05274632.1| flagellar biosynthesis protein FliQ [Listeria monocytogenes FSL
J2-064]
gi|255028551|ref|ZP_05300502.1| flagellar biosynthesis protein FliQ [Listeria monocytogenes LO28]
gi|255521626|ref|ZP_05388863.1| flagellar biosynthesis protein FliQ [Listeria monocytogenes FSL
J1-175]
gi|284801007|ref|YP_003412872.1| flagellar biosynthesis protein FliQ [Listeria monocytogenes
08-5578]
gi|284994149|ref|YP_003415917.1| flagellar biosynthesis protein FliQ [Listeria monocytogenes
08-5923]
gi|300764488|ref|ZP_07074481.1| flagellar biosynthetic protein FliQ [Listeria monocytogenes FSL
N1-017]
gi|16410066|emb|CAC98755.1| lmo0677 [Listeria monocytogenes EGD-e]
gi|46880194|gb|AAT03494.1| flagellar biosynthetic protein FliQ [Listeria monocytogenes
serotype 4b str. F2365]
gi|47016313|gb|EAL07235.1| flagellar biosynthetic protein FliQ [Listeria monocytogenes str.
1/2a F6854]
gi|47019959|gb|EAL10696.1| flagellar biosynthetic protein FliQ [Listeria monocytogenes str.
4b H7858]
gi|116740944|emb|CAK20064.1| flagellar biosynthetic protein FliQ, putative [Listeria
welshimeri serovar 6b str. SLCC5334]
gi|225875770|emb|CAS04473.1| Putative flagellar biosynthesis protein FliQ [Listeria
monocytogenes serotype 4b str. CLIP 80459]
gi|258601746|gb|EEW15071.1| flagellar biosynthetic protein FliQ [Listeria monocytogenes FSL
N3-165]
gi|258606469|gb|EEW19077.1| flagellar biosynthetic protein FliQ [Listeria monocytogenes FSL
R2-503]
gi|258608269|gb|EEW20877.1| flagellar biosynthetic protein FliQ [Listeria monocytogenes
F6900]
gi|284056569|gb|ADB67510.1| flagellar biosynthesis protein FliQ [Listeria monocytogenes
08-5578]
gi|284059616|gb|ADB70555.1| flagellar biosynthesis protein FliQ [Listeria monocytogenes
08-5923]
gi|293583596|gb|EFF95628.1| flagellar biosynthetic protein FliQ [Listeria monocytogenes
HPB2262]
gi|293589296|gb|EFF97630.1| flagellar biosynthesis protein FliQ [Listeria monocytogenes
J2818]
gi|293593272|gb|EFG01033.1| flagellar biosynthetic protein FliQ [Listeria monocytogenes FSL
J1-194]
gi|300514842|gb|EFK41896.1| flagellar biosynthetic protein FliQ [Listeria monocytogenes FSL
N1-017]
gi|328467246|gb|EGF38326.1| flagellar biosynthesis protein FliQ [Listeria monocytogenes 1816]
gi|328475642|gb|EGF46391.1| flagellar biosynthesis protein FliQ [Listeria monocytogenes 220]
gi|332311102|gb|EGJ24197.1| Export protein FliQ family 3 [Listeria monocytogenes str. Scott
A]
Length = 90
Score = 34.3 bits (77), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 29/47 (61%)
Query: 38 LQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSRI 84
L A+ QIQ+ +LTF+PKI+A + L I P++ ++ + S++
Sbjct: 38 LMAMMQIQDQSLTFLPKIVAFVVALFILGPWMFEHMTDLFVGIFSKL 84
>gi|258622509|ref|ZP_05717531.1| Flagellar biosynthetic protein fliQ [Vibrio mimicus VM573]
gi|258624668|ref|ZP_05719603.1| Flagellar biosynthetic protein fliQ [Vibrio mimicus VM603]
gi|262173375|ref|ZP_06041052.1| flagellar biosynthesis protein FliQ [Vibrio mimicus MB-451]
gi|258583060|gb|EEW07874.1| Flagellar biosynthetic protein fliQ [Vibrio mimicus VM603]
gi|258585209|gb|EEW09936.1| Flagellar biosynthetic protein fliQ [Vibrio mimicus VM573]
gi|261890733|gb|EEY36720.1| flagellar biosynthesis protein FliQ [Vibrio mimicus MB-451]
Length = 89
Score = 34.3 bits (77), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 36/57 (63%)
Query: 13 AMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
A+W I+ A ++ + +G+ IA QA TQI E TL+F+P+++A + +I + ++
Sbjct: 13 AVWMIIIIVAVLVVPGLIVGLGIAVFQAATQINEQTLSFLPRLLATLLMVIFAGHWM 69
>gi|57504669|ref|ZP_00370747.1| flagellar biosynthetic protein FliQ [Campylobacter coli RM2228]
gi|305432627|ref|ZP_07401788.1| flagellar biosynthetic protein FliQ [Campylobacter coli JV20]
gi|57019438|gb|EAL56133.1| flagellar biosynthetic protein FliQ [Campylobacter coli RM2228]
gi|304444338|gb|EFM36990.1| flagellar biosynthetic protein FliQ [Campylobacter coli JV20]
Length = 89
Score = 34.3 bits (77), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 35/53 (66%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSRI 84
G++I+ QA TQI E+TL+FVPKII V I +I P++ + F +L++I
Sbjct: 32 GLIISIFQATTQINEMTLSFVPKIILVVIVIIFLMPWMTTTMIDFTENILNQI 84
>gi|217972627|ref|YP_002357378.1| flagellar biosynthetic protein FliQ [Shewanella baltica OS223]
gi|217497762|gb|ACK45955.1| flagellar biosynthetic protein FliQ [Shewanella baltica OS223]
Length = 89
Score = 34.3 bits (77), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 46/84 (54%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ +++I R A+ I+ + ++ + +G+++A QA T I E TL+F+P+++
Sbjct: 1 MSPEALIDIFREALAVIVMMVSAIVLPGLGIGLIVAVFQAATSINEQTLSFLPRLLVTLF 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
L+ ++ + F +++RI
Sbjct: 61 GLMFMGHWLVETLMDFFIEMVNRI 84
>gi|254575133|gb|ACT68034.1| type III secretion apparatus [Pantoea stewartii subsp. stewartii
DC283]
Length = 84
Score = 34.3 bits (77), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 5 DVLEIARAAMWTILSSSA-PVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLI 63
+VL I A+ +L +A P+ F+ + +GI++ Q + QIQE TL F K++AVF ++
Sbjct: 3 NVLFIGNTALIVVLKLTAVPIAFATV-VGIIVGLFQTIMQIQEQTLPFGLKMLAVFASIF 61
Query: 64 ISAPFIGGQISSF 76
+ + ++ +F
Sbjct: 62 MLIEWFSAEMMNF 74
>gi|262273548|ref|ZP_06051362.1| flagellar biosynthesis protein FliQ [Grimontia hollisae CIP
101886]
gi|262222526|gb|EEY73837.1| flagellar biosynthesis protein FliQ [Grimontia hollisae CIP
101886]
Length = 89
Score = 34.3 bits (77), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 35/57 (61%)
Query: 13 AMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
A++ I+S ++ + +G++++ QA TQI E TL+F+P+++ L + P++
Sbjct: 13 ALFMIVSMVCVLILPGLLVGLVVSIFQAATQINEQTLSFLPRLLVTLAMLGFAGPWM 69
>gi|308050043|ref|YP_003913609.1| export protein FliQ family 3 [Ferrimonas balearica DSM 9799]
gi|307632233|gb|ADN76535.1| export protein FliQ family 3 [Ferrimonas balearica DSM 9799]
Length = 89
Score = 33.9 bits (76), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 39/64 (60%)
Query: 13 AMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQ 72
++ +++ ++ M +G++IA LQA TQ+ E TL+F+P+++ + ++ + ++ Q
Sbjct: 13 GIYLVVAMVGVLIMPGMVVGLVIAVLQAATQVNEQTLSFLPRLLITLLMVLFAGNWLLQQ 72
Query: 73 ISSF 76
++
Sbjct: 73 LADL 76
>gi|325917837|ref|ZP_08180016.1| flagellar biosynthesis pathway, component FliQ [Xanthomonas
vesicatoria ATCC 35937]
gi|325535948|gb|EGD07765.1| flagellar biosynthesis pathway, component FliQ [Xanthomonas
vesicatoria ATCC 35937]
Length = 89
Score = 33.9 bits (76), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%)
Query: 11 RAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIG 70
R + T+L + P+L + + +G++I +QA TQ+ E T+ FV K +A+ TL + +
Sbjct: 11 RGGLVTVLWIAGPMLLAVLIVGVVIGVVQAATQLNEPTIGFVAKAVALTATLFATGSMLL 70
Query: 71 GQISSFVTLVLSRI 84
G + F + RI
Sbjct: 71 GHLVEFTIALFQRI 84
>gi|167743327|ref|ZP_02416101.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 14]
Length = 87
Score = 33.9 bits (76), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M D++ + M L S PV+ A G+ I+FLQA+T +QE ++++ K++AV +
Sbjct: 1 MEIDDLIRLTSQGMMLCLYISLPVVLVAAASGLAISFLQAITSLQEQSISYGVKLVAVTV 60
Query: 61 TLIISAPFIGGQISSF 76
+ I+ P+ +I F
Sbjct: 61 AVAIAGPWAAAEILHF 76
>gi|332533115|ref|ZP_08408984.1| flagellar biosynthetic protein FliQ [Pseudoalteromonas
haloplanktis ANT/505]
gi|332037397|gb|EGI73851.1| flagellar biosynthetic protein FliQ [Pseudoalteromonas
haloplanktis ANT/505]
Length = 89
Score = 33.9 bits (76), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 40/71 (56%)
Query: 8 EIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAP 67
+I A++ ++ + ++ + +G+++A QA T I E TL+F+P+++ LI+
Sbjct: 8 DILSDALFLVIKLVSAIVVPGLIIGLVVAVFQAATSINEQTLSFLPRLLITISALIVGGH 67
Query: 68 FIGGQISSFVT 78
++ ++ F T
Sbjct: 68 WLTQELMDFFT 78
>gi|330903476|gb|EGH34048.1| type III secretion protein HrcS [Pseudomonas syringae pv.
japonica str. M301072PT]
Length = 73
Score = 33.9 bits (76), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 36 AFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSRIQSS 87
+ LQAL QIQ+ TL F K+ AV +TL ++ +IG ++ F+ + I S
Sbjct: 18 SLLQALMQIQDQTLPFGIKLGAVGLTLAMTGRWIGVELIQFINMAFDLIARS 69
>gi|293416350|ref|ZP_06658989.1| type III secretion protein SctS [Escherichia coli B185]
gi|291431706|gb|EFF04689.1| type III secretion protein SctS [Escherichia coli B185]
Length = 86
Score = 33.5 bits (75), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNE ++ A++ +L SA + A +G+LI Q +TQ+QE TL F K++ + +
Sbjct: 1 MNE--LVFAGNKALYLVLCLSAWPVAVATLIGLLIGIFQTVTQLQEQTLPFGLKLLGICL 58
Query: 61 TLIISAPFIGGQISSF 76
+ + + G + +F
Sbjct: 59 CFFLLSGWYGDALLAF 74
>gi|120598261|ref|YP_962835.1| flagellar biosynthetic protein FliQ [Shewanella sp. W3-18-1]
gi|146293661|ref|YP_001184085.1| flagellar biosynthetic protein FliQ [Shewanella putrefaciens
CN-32]
gi|120558354|gb|ABM24281.1| flagellar biosynthetic protein FliQ [Shewanella sp. W3-18-1]
gi|145565351|gb|ABP76286.1| flagellar biosynthetic protein FliQ [Shewanella putrefaciens
CN-32]
gi|319427060|gb|ADV55134.1| flagellar biosynthetic protein FliQ [Shewanella putrefaciens 200]
Length = 89
Score = 33.5 bits (75), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 45/84 (53%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +++I R A+ I+ + ++ + +G+++A QA T I E TL+F+P+++
Sbjct: 1 MTPEALIDIFREALAVIVMMVSAIVLPGLGIGLVVAVFQAATSINEQTLSFLPRLLVTLF 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
L+ ++ + F +++RI
Sbjct: 61 GLMFMGHWLVQTLMDFFIEMVNRI 84
>gi|254255058|ref|ZP_04948375.1| Type III secretory pathway component EscS [Burkholderia dolosa
AUO158]
gi|124899703|gb|EAY71546.1| Type III secretory pathway component EscS [Burkholderia dolosa
AUO158]
Length = 84
Score = 33.5 bits (75), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 29/43 (67%)
Query: 28 AMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIG 70
A +G+++ +Q +TQ+QE TL+F K++AV + L + A + G
Sbjct: 26 ATIVGLVVGLIQTVTQLQEQTLSFGVKVLAVSLCLFLLAGWYG 68
>gi|315127308|ref|YP_004069311.1| flagellar biosynthesis [Pseudoalteromonas sp. SM9913]
gi|315015822|gb|ADT69160.1| flagellar biosynthesis [Pseudoalteromonas sp. SM9913]
Length = 89
Score = 33.5 bits (75), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Query: 8 EIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAP 67
+I A++ ++ + ++ + +G+++A QA T I E TL+F+P+++ + ISA
Sbjct: 8 DILSGALFLVIKLVSAIVVPGLIIGLVVAVFQAATSINEQTLSFLPRLL-----ITISAL 62
Query: 68 FIGGQ 72
+GG
Sbjct: 63 IVGGH 67
Searching..................................................done
Results from round 2
>gi|217976246|ref|YP_002360393.1| flagellar biosynthesis protein FliQ [Methylocella silvestris BL2]
gi|217501622|gb|ACK49031.1| flagellar biosynthetic protein FliQ [Methylocella silvestris BL2]
Length = 88
Score = 78.7 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 49/87 (56%), Positives = 63/87 (72%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEAD LE+ R+A+WTI+ S P + +AMF+G++IA LQALTQIQE TLTFVPKI+ +F+
Sbjct: 1 MNEADALELIRSAIWTIIVGSGPPVAAAMFVGLIIALLQALTQIQETTLTFVPKIVVIFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
L PFIG QI +F V RI+
Sbjct: 61 VLSFGGPFIGAQIFAFTEHVYGRIEKG 87
>gi|167040313|ref|YP_001663298.1| flagellar biosynthesis protein FliQ [Thermoanaerobacter sp. X514]
gi|256750757|ref|ZP_05491642.1| flagellar biosynthetic protein FliQ [Thermoanaerobacter
ethanolicus CCSD1]
gi|300914397|ref|ZP_07131713.1| flagellar biosynthetic protein FliQ [Thermoanaerobacter sp. X561]
gi|307724367|ref|YP_003904118.1| flagellar biosynthetic protein FliQ [Thermoanaerobacter sp. X513]
gi|166854553|gb|ABY92962.1| flagellar biosynthetic protein FliQ [Thermoanaerobacter sp. X514]
gi|256750340|gb|EEU63359.1| flagellar biosynthetic protein FliQ [Thermoanaerobacter
ethanolicus CCSD1]
gi|300889332|gb|EFK84478.1| flagellar biosynthetic protein FliQ [Thermoanaerobacter sp. X561]
gi|307581428|gb|ADN54827.1| flagellar biosynthetic protein FliQ [Thermoanaerobacter sp. X513]
Length = 89
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 56/88 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN V++I R A+ L ++P+L A+ +G+LI+ QA TQIQE TL+FVPKI+A+ I
Sbjct: 1 MNTGVVIDIGREALTVALKVASPLLAVALGVGLLISIFQATTQIQEQTLSFVPKIVAILI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+LI+ P++ + ++ + I + +
Sbjct: 61 SLILFGPWMLTTLVNYTQRLFLNINNFI 88
>gi|307264884|ref|ZP_07546446.1| flagellar biosynthetic protein FliQ [Thermoanaerobacter wiegelii
Rt8.B1]
gi|306920142|gb|EFN50354.1| flagellar biosynthetic protein FliQ [Thermoanaerobacter wiegelii
Rt8.B1]
Length = 89
Score = 74.1 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 55/88 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN V++I R A+ L + P+L A+ +G+LI+ QA TQIQE TL+FVPKI+A+ I
Sbjct: 1 MNTGMVIDIGREALTIALKVATPLLAVALGVGLLISIFQATTQIQEQTLSFVPKIVAILI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+LI+ P++ + ++ + I + +
Sbjct: 61 SLILFGPWMLTTLVNYTQRLFLNINNFI 88
>gi|85716545|ref|ZP_01047515.1| flagellar biosynthesis protein [Nitrobacter sp. Nb-311A]
gi|85696546|gb|EAQ34434.1| flagellar biosynthesis protein [Nitrobacter sp. Nb-311A]
Length = 105
Score = 73.7 bits (180), Expect = 7e-12, Method: Composition-based stats.
Identities = 37/87 (42%), Positives = 60/87 (68%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M A+ L++AR A+WTI+ S P+L + +G+ I+ +QALTQIQE TL FVPKI+A+F+
Sbjct: 19 MTGAETLDVARDAIWTIVLVSGPLLGVGLIVGVAISLVQALTQIQEQTLVFVPKILAIFV 78
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
T++++ PF+ + + + + SRI
Sbjct: 79 TMVLALPFMADALHAEMIRISSRIIGG 105
>gi|288553048|ref|YP_003424983.1| flagellar biosynthesis protein FliQ [Bacillus pseudofirmus OF4]
gi|288544208|gb|ADC48091.1| flagellar biosynthesis protein FliQ [Bacillus pseudofirmus OF4]
Length = 89
Score = 73.4 bits (179), Expect = 9e-12, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 55/88 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ V+ +A +WT+L + P+L A+ LG+L++ QA TQIQE TL F+PKI+ V
Sbjct: 1 MSSEFVISMAENGVWTVLIVAGPLLIVALGLGLLVSIFQATTQIQEQTLAFIPKIVGVLA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+L+I P++ Q+++F + S + +
Sbjct: 61 SLVIFGPWMLSQVTNFAYQIFSNLHRFI 88
>gi|311030114|ref|ZP_07708204.1| flagellar biosynthesis protein FliQ [Bacillus sp. m3-13]
Length = 89
Score = 73.4 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 55/88 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ V+ +A ++TIL SAP+L A+ +G++++ QA TQIQE TL F+PKI+AV +
Sbjct: 1 MSPEFVISMAERGVYTILLISAPLLILALVVGLIVSIFQATTQIQEQTLAFIPKIVAVLV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L++ P++ + S+ + + I +
Sbjct: 61 GLVVFGPWMLSNMLSYALEIFNNIHRYV 88
>gi|288942624|ref|YP_003444864.1| flagellar biosynthetic protein FliQ [Allochromatium vinosum DSM
180]
gi|288897996|gb|ADC63832.1| flagellar biosynthetic protein FliQ [Allochromatium vinosum DSM
180]
Length = 89
Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 53/88 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M VL++ + A I+ SAP L + + +G++I+ QA TQIQE+TLTF+PK++ V
Sbjct: 1 MTPEMVLDVGKEAGEVIILMSAPPLLAGLIIGLIISLFQAATQIQEMTLTFIPKLVGVGA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
LI + P++ ++ +VT + I +
Sbjct: 61 ALIFAGPWMLTLVTDYVTRLYESIPGMI 88
>gi|78358621|ref|YP_390070.1| flagellar biosynthetic protein FliQ [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
gi|78221026|gb|ABB40375.1| flagellar biosynthetic protein FliQ [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
Length = 89
Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 55/88 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ AR A+ L+ S P+L + +G+ ++ +QA TQIQE TL+F+PKI+++F+
Sbjct: 1 MTPEFVVGFARQAIELALTISLPMLGIGLAVGVFVSVIQAATQIQETTLSFIPKIVSIFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L++S P+I ++ +F V I + +
Sbjct: 61 ALLVSFPWIMDKMLAFTREVFINIPNYV 88
>gi|17548595|ref|NP_521935.1| flagellar biosynthesis protein FliQ [Ralstonia solanacearum
GMI1000]
gi|17430843|emb|CAD17525.1| probable flagellar biosynthetic fliq transmembrane protein
[Ralstonia solanacearum GMI1000]
Length = 89
Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 55/88 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M VL +AR AM + AP+L ++ +G+L+A QA TQ+ E TL+F+PK++AV
Sbjct: 1 MTPEYVLNMARQAMQVAMMIGAPMLLVSLIVGLLVAVFQAATQLNEQTLSFIPKLLAVAA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
T+I++ P++ G I + VL+ I + +
Sbjct: 61 TMILAGPWVLGVIVDYTRDVLTNIPNYV 88
>gi|260438789|ref|ZP_05792605.1| flagellar biosynthetic protein FliQ [Butyrivibrio crossotus DSM
2876]
gi|292808778|gb|EFF67983.1| flagellar biosynthetic protein FliQ [Butyrivibrio crossotus DSM
2876]
Length = 91
Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 59/88 (67%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E +++I+R A++ I+ SAP+L ++ +G++I+ Q +T IQE TLTFVPKIIAVFI
Sbjct: 1 MSEQQIIDISRKALYLIIQCSAPILIISLVVGLVISIFQTMTSIQEQTLTFVPKIIAVFI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+++ ++ I+S++ + S +
Sbjct: 61 GVMLFGSWMLNNITSYMNELWSNFNMYI 88
>gi|152979930|ref|YP_001353120.1| FliQ component of flagellar biosynthesis pathway
[Janthinobacterium sp. Marseille]
gi|151280007|gb|ABR88417.1| FliQ component of flagellar biosynthesis pathway
[Janthinobacterium sp. Marseille]
Length = 98
Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 52/85 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + R A+ L +AP+L A+ +G++++ QA TQI E TL+F+PK+I +F+
Sbjct: 10 MTPETVMTMGRHAIEVTLMVAAPMLLVALGIGLIVSIFQAATQINETTLSFIPKLIGIFV 69
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
L+++ P++ + ++ + + I
Sbjct: 70 ALVVAGPWMLTVLLDYMREMFTNIP 94
>gi|295706269|ref|YP_003599344.1| flagellar biosynthetic protein FliQ [Bacillus megaterium DSM 319]
gi|294803928|gb|ADF40994.1| flagellar biosynthetic protein FliQ [Bacillus megaterium DSM 319]
Length = 89
Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 33/84 (39%), Positives = 53/84 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN V+ +A ++TIL S P+L A+ +G++I+ QA TQIQE TL FVPKI+AV +
Sbjct: 1 MNGEFVISLAEKGVYTILIVSGPLLLLALVVGLIISIFQATTQIQEQTLAFVPKIVAVLV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
++ P++ ++ SF + S +
Sbjct: 61 GIVFFGPWMLSKMISFTHEIFSNL 84
>gi|167464151|ref|ZP_02329240.1| FliQ [Paenibacillus larvae subsp. larvae BRL-230010]
gi|322382377|ref|ZP_08056284.1| flagellar biosynthesis protein FliQ [Paenibacillus larvae subsp.
larvae B-3650]
gi|321153730|gb|EFX46105.1| flagellar biosynthesis protein FliQ [Paenibacillus larvae subsp.
larvae B-3650]
Length = 89
Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 58/88 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ ++++A A++T+L +S P+L A+ +G+L++ QA TQIQE TL FVPKIIAV +
Sbjct: 1 MSSEFIIKLAGDAVYTVLKASGPMLIIALVVGLLVSIFQATTQIQEQTLAFVPKIIAVLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
++II P+I + + +L+ + +
Sbjct: 61 SVIIFGPWILNTLVDYTFNLLNNLHRFI 88
>gi|90422630|ref|YP_531000.1| flagellar biosynthesis protein FliQ [Rhodopseudomonas palustris
BisB18]
gi|90104644|gb|ABD86681.1| flagellar biosynthetic protein FliQ [Rhodopseudomonas palustris
BisB18]
Length = 88
Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 42/88 (47%), Positives = 61/88 (69%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNE D L+I + A+WTI+ S P + +AM +G+ IA LQALTQ+QE+TLTF+PKI+ + I
Sbjct: 1 MNERDALDIVQQAIWTIIVVSGPAVGAAMAVGVAIALLQALTQVQEMTLTFIPKIVVMLI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+ +S F+G I +F L+ SRI+
Sbjct: 61 VVAVSGSFMGAHIYAFTELLYSRIEHGF 88
>gi|110632634|ref|YP_672842.1| flagellar biosynthesis protein FliQ [Mesorhizobium sp. BNC1]
gi|110283618|gb|ABG61677.1| flagellar biosynthetic protein FliQ [Chelativorans sp. BNC1]
Length = 88
Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 45/88 (51%), Positives = 66/88 (75%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEAD L+I + A+WT+L +S P + AM +G+ IA +QALTQ+QE+TLTFVPKI+A+ +
Sbjct: 1 MNEADALDIVQYAIWTVLLASGPAVIVAMVVGVGIALVQALTQVQEITLTFVPKIVAIML 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+ +S PF+G QISSF ++ RI++
Sbjct: 61 AIALSGPFVGTQISSFTNVIFQRIENGF 88
>gi|289578417|ref|YP_003477044.1| flagellar biosynthetic protein FliQ [Thermoanaerobacter italicus
Ab9]
gi|297544693|ref|YP_003676995.1| flagellar biosynthetic protein FliQ [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|289528130|gb|ADD02482.1| flagellar biosynthetic protein FliQ [Thermoanaerobacter italicus
Ab9]
gi|296842468|gb|ADH60984.1| flagellar biosynthetic protein FliQ [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
Length = 89
Score = 72.2 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 56/88 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN V++I R A+ L+ + P+L A+ +G+LI+ QA TQIQE TL+FVPKI+A+ I
Sbjct: 1 MNTGVVIDIGREALTVTLTVATPLLAVALVVGLLISIFQATTQIQEQTLSFVPKIVAILI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+LI+ P++ + ++ + I + +
Sbjct: 61 SLILFGPWMLTTLVNYTQRLFLNINNFI 88
>gi|90415341|ref|ZP_01223275.1| Flagellar biosynthesis/type III secretory pathway protein [marine
gamma proteobacterium HTCC2207]
gi|90332664|gb|EAS47834.1| Flagellar biosynthesis/type III secretory pathway protein [marine
gamma proteobacterium HTCC2207]
Length = 89
Score = 72.2 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 53/88 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ A V+++ R A+W + ++P+L A+ +G+++ QA T IQE+TL+F+PK+ + +
Sbjct: 1 MDPALVIDLGREALWVAVMVASPLLGVALGVGLIVGIFQAATSIQEMTLSFIPKLGIMVL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L+I + G + ++ + RI +
Sbjct: 61 ALLIFGSWQIGVMVDYIQRIYERIPALF 88
>gi|309388835|gb|ADO76715.1| flagellar biosynthetic protein FliQ [Halanaerobium praevalens DSM
2228]
Length = 89
Score = 72.2 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 38/88 (43%), Positives = 53/88 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M EA VL+I R A++T++ PVL + + G+L+A QA TQIQE TL FVPKI AV
Sbjct: 1 MGEAVVLDIGRQALFTVIIVVFPVLGAGLITGLLVAIFQATTQIQEQTLAFVPKIFAVLG 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
++ P+I + FV +L I + L
Sbjct: 61 SIAFFGPWIMRTVIEFVQELLRNIPTYL 88
>gi|212639550|ref|YP_002316070.1| flagellar biosynthesis protein FliQ [Anoxybacillus flavithermus
WK1]
gi|212561030|gb|ACJ34085.1| Flagellar biosynthesis pathway, component FliQ [Anoxybacillus
flavithermus WK1]
Length = 92
Score = 72.2 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 53/84 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ V+++A ++ +L P++ A+ +G+LI+ LQA TQIQE TL FVPKI+AV +
Sbjct: 4 MSPDFVIQVAERGVYMVLVVCGPLMLLALAVGLLISILQATTQIQEQTLAFVPKIVAVLL 63
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
L+ P++ ++ S+ + S +
Sbjct: 64 GLVFFGPWMLSRMVSYAYNIFSNL 87
>gi|167037652|ref|YP_001665230.1| flagellar biosynthesis protein FliQ [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|320116067|ref|YP_004186226.1| flagellar biosynthetic protein FliQ [Thermoanaerobacter brockii
subsp. finnii Ako-1]
gi|326389466|ref|ZP_08211033.1| flagellar biosynthetic protein FliQ [Thermoanaerobacter
ethanolicus JW 200]
gi|166856486|gb|ABY94894.1| flagellar biosynthetic protein FliQ [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|319929158|gb|ADV79843.1| flagellar biosynthetic protein FliQ [Thermoanaerobacter brockii
subsp. finnii Ako-1]
gi|325994471|gb|EGD52896.1| flagellar biosynthetic protein FliQ [Thermoanaerobacter
ethanolicus JW 200]
Length = 89
Score = 72.2 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 56/88 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN V++I R A+ L+ + P+L A+ +G+LI+ QA TQIQE TL+FVPKI+A+ I
Sbjct: 1 MNTGMVIDIGREALTIALTVATPLLAVALGVGLLISIFQATTQIQEQTLSFVPKIVAILI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+LI+ P++ + ++ + I + +
Sbjct: 61 SLILFGPWMLTTLVNYTQRLFLNINNFI 88
>gi|187926924|ref|YP_001893269.1| flagellar biosynthetic protein FliQ [Ralstonia pickettii 12J]
gi|241665253|ref|YP_002983612.1| flagellar biosynthesis protein FliQ [Ralstonia pickettii 12D]
gi|187728678|gb|ACD29842.1| flagellar biosynthetic protein FliQ [Ralstonia pickettii 12J]
gi|240867280|gb|ACS64940.1| flagellar biosynthetic protein FliQ [Ralstonia pickettii 12D]
Length = 89
Score = 72.2 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 55/88 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M VL++AR AM + AP+L ++ +G+L+A QA TQ+ E +L+F+PK++AV
Sbjct: 1 MTPEYVLDMARQAMQVAMMVGAPMLLVSLIVGLLVAVFQAATQLNEQSLSFIPKLLAVAA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
T++++ P+I I + +L+ I S +
Sbjct: 61 TMVLAGPWILSVIVDYTRNLLTNIPSYV 88
>gi|119503676|ref|ZP_01625759.1| flagellar biosynthesis protein Q [marine gamma proteobacterium
HTCC2080]
gi|119460738|gb|EAW41830.1| flagellar biosynthesis protein Q [marine gamma proteobacterium
HTCC2080]
Length = 89
Score = 72.2 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 55/88 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M VL++ R A+W + + P+L +A+ +G+ I +QA TQIQE+TL+F+PK++A+ +
Sbjct: 1 MGPETVLDLGRDALWLAVLLAGPLLGAALAVGLFIGVIQAATQIQEMTLSFIPKLLALVV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
TL + P++ +++F + I +
Sbjct: 61 TLFVIGPWMLRILTTFAQRLFMDIPGLV 88
>gi|20807872|ref|NP_623043.1| flagellar biosynthesis protein FliQ [Thermoanaerobacter
tengcongensis MB4]
gi|20516436|gb|AAM24647.1| Flagellar biosynthesis/type III secretory pathway protein
[Thermoanaerobacter tengcongensis MB4]
Length = 89
Score = 71.8 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 56/88 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ + +++ R A+ L+ + P+L A+ +G+LI+ QA TQIQE TL+FVPKI+AV +
Sbjct: 1 MSSSMAVDLGREALSVALTVATPMLAVALGVGLLISIFQATTQIQEQTLSFVPKIVAVLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+LI+ P++ + ++ + I + +
Sbjct: 61 SLILFGPWMLTTLVNYTQRLFLNINNFI 88
>gi|115523199|ref|YP_780110.1| flagellar biosynthesis protein FliQ [Rhodopseudomonas palustris
BisA53]
gi|115517146|gb|ABJ05130.1| flagellar biosynthetic protein FliQ [Rhodopseudomonas palustris
BisA53]
Length = 88
Score = 71.8 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 45/88 (51%), Positives = 64/88 (72%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNE D L+IA+ A+WTI+ +S P + +AMF+GI IA LQALTQ+QE+TLTF+PKI+ + I
Sbjct: 1 MNERDALDIAQQAVWTIIVASGPAVAAAMFVGIAIALLQALTQVQEMTLTFIPKIVVMLI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+ +S F+G I +F L+ SRI+
Sbjct: 61 VVAVSGSFMGAHIYAFTELLYSRIEHGF 88
>gi|294500923|ref|YP_003564623.1| flagellar biosynthetic protein FliQ [Bacillus megaterium QM
B1551]
gi|294350860|gb|ADE71189.1| flagellar biosynthetic protein FliQ [Bacillus megaterium QM
B1551]
Length = 89
Score = 71.4 bits (174), Expect = 3e-11, Method: Composition-based stats.
Identities = 33/84 (39%), Positives = 53/84 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN V+ +A ++TIL S P+L A+ +G++I+ QA TQIQE TL FVPKI+AV +
Sbjct: 1 MNGEFVISLAEKGVYTILIVSGPLLLLALVIGLIISIFQATTQIQEQTLAFVPKIVAVLV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
++ P++ ++ SF + S +
Sbjct: 61 GIVFFGPWMLSKMISFTYEIFSNL 84
>gi|311695202|gb|ADP98075.1| flagellar biosynthetic protein FliQ [marine bacterium HP15]
Length = 89
Score = 71.4 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 48/85 (56%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V++I R A+W I+ ++ ++ + +G++++ QA TQI E TL+F+P+++ I
Sbjct: 1 MTPETVIDILREALWMIVLLASIIIGPGLVIGLVVSTFQAATQINEQTLSFLPRLLVTLI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
+I+ P++ Q+ + I
Sbjct: 61 VIIVWGPWMLTQLLDHANRLFGNIP 85
>gi|295696129|ref|YP_003589367.1| flagellar biosynthetic protein FliQ [Bacillus tusciae DSM 2912]
gi|295411731|gb|ADG06223.1| flagellar biosynthetic protein FliQ [Bacillus tusciae DSM 2912]
Length = 89
Score = 71.4 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 52/88 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ +VL+I + + L S P L + +G++I+ QA+TQIQE TLTF+PK++AVF
Sbjct: 1 MSPDNVLQIGQETLRIALLLSLPFLGFTLVVGLIISIFQAVTQIQEPTLTFLPKVLAVFA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+++ P++ + + + ++ +
Sbjct: 61 VILLLGPWMLHTLLDYTEGIFGQLSGFI 88
>gi|186477689|ref|YP_001859159.1| flagellar biosynthetic protein FliQ [Burkholderia phymatum
STM815]
gi|184194148|gb|ACC72113.1| flagellar biosynthetic protein FliQ [Burkholderia phymatum
STM815]
Length = 89
Score = 71.4 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 52/86 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V +A AM+ L +AP LF + +G++++ QA TQI E TL+F+PK+ A+ +
Sbjct: 1 MTPETVTTLAHEAMYIALLLAAPPLFVGLVVGLIVSLFQAATQINEATLSFIPKLFAIAV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
TL++ P++ ++ ++ + + I +
Sbjct: 61 TLVLIGPWMLAKMLDYMRHMFTSIPT 86
>gi|300693348|ref|YP_003749321.1| fliq: flagellar biosynthesis protein. fliq/mopd/spaq family
[Ralstonia solanacearum PSI07]
gi|299075385|emb|CBJ34680.1| FliQ: flagellar biosynthesis protein. fliQ/mopD/spaQ family
[Ralstonia solanacearum PSI07]
Length = 89
Score = 71.4 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 54/88 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M VL +AR AM + AP+L ++ +G+L+A QA TQ+ E TL+F+PK++AV
Sbjct: 1 MTPEYVLNMARQAMQVAMMIGAPMLLVSLIVGLLVAVFQAATQLNEQTLSFIPKLLAVAA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
T+I++ P++ G I + VL I + +
Sbjct: 61 TMILAGPWVLGVIVDYTRDVLINIPNYV 88
>gi|296445190|ref|ZP_06887150.1| flagellar biosynthetic protein FliQ [Methylosinus trichosporium
OB3b]
gi|296257364|gb|EFH04431.1| flagellar biosynthetic protein FliQ [Methylosinus trichosporium
OB3b]
Length = 88
Score = 71.4 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 50/88 (56%), Positives = 68/88 (77%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEAD LEI + A++T+L S PV+ +AM +G++IA LQALTQ+QE+TLTFVPKIIA+F+
Sbjct: 1 MNEADALEIMQRAIFTVLVVSGPVVGAAMLVGVVIALLQALTQVQEMTLTFVPKIIAIFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L +SAPFIG QIS+F ++I+
Sbjct: 61 ALGLSAPFIGSQISAFTDYAYAKIEKGF 88
>gi|220932508|ref|YP_002509416.1| flagellar biosynthetic protein FliQ [Halothermothrix orenii H
168]
gi|219993818|gb|ACL70421.1| flagellar biosynthetic protein FliQ [Halothermothrix orenii H
168]
Length = 89
Score = 71.4 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 37/88 (42%), Positives = 56/88 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M++A V++I R A++ +L APV+ + G+L+A QA TQIQE TL FVPKI+AV I
Sbjct: 1 MDKALVIDIGRNALFVVLKIIAPVIGFGLITGLLVAIFQATTQIQEQTLAFVPKILAVLI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
++ I P++ I FVT + I + +
Sbjct: 61 SIAIFGPWMLSTIVDFVTSLFQHIPTYI 88
>gi|222053617|ref|YP_002535979.1| flagellar biosynthetic protein FliQ [Geobacter sp. FRC-32]
gi|221562906|gb|ACM18878.1| flagellar biosynthetic protein FliQ [Geobacter sp. FRC-32]
Length = 89
Score = 71.0 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 33/86 (38%), Positives = 51/86 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+++AR + T L SAP+L ++ +G+LI+ QA+T I E TL F PKI AV +
Sbjct: 1 MTSDLVVQLARRSFETTLLLSAPLLTFSLVVGLLISIFQAITSINEATLAFAPKIAAVMV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
LII P++ +S F + + I +
Sbjct: 61 ALIIFFPWMMSYMSDFTREIYNMIPN 86
>gi|188586036|ref|YP_001917581.1| flagellar biosynthetic protein FliQ [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179350723|gb|ACB84993.1| flagellar biosynthetic protein FliQ [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 89
Score = 71.0 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 34/88 (38%), Positives = 56/88 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M E VL + R A+ T+L ++AP+L SA+ +G++++ QA TQIQE TL FVPKI+AV +
Sbjct: 1 MTEEFVLHLGREALITVLLAAAPMLASALIVGLMVSIFQATTQIQEQTLAFVPKIVAVLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
++ P++ ++ F + S I +
Sbjct: 61 SVAFFGPWMYTLLTEFAINIFSNINQFI 88
>gi|256833224|ref|YP_003161951.1| flagellar biosynthetic protein FliQ [Jonesia denitrificans DSM
20603]
gi|256686755|gb|ACV09648.1| flagellar biosynthetic protein FliQ [Jonesia denitrificans DSM
20603]
Length = 90
Score = 71.0 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 54/88 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ VL+I A+W AP+L +A+ +G I+ LQ++TQ+QEVTL+FVPK + V I
Sbjct: 1 MDTTAVLDIGLQALWLTAKLCAPILITALAVGFAISLLQSITQVQEVTLSFVPKALGVAI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+ IS ++ + +F + +RI + L
Sbjct: 61 VIYISGHWMIEETVAFTNEMFNRIPTLL 88
>gi|254517018|ref|ZP_05129076.1| flagellar biosynthetic protein FliQ [gamma proteobacterium
NOR5-3]
gi|219674523|gb|EED30891.1| flagellar biosynthetic protein FliQ [gamma proteobacterium
NOR5-3]
Length = 89
Score = 71.0 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 56/88 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M VL + + A+W + + P+L SA+ +G+LI QA TQIQE+TL+F+PK++A+ +
Sbjct: 1 MGPETVLAVGKDALWLAVLLAGPLLLSALAVGLLIGIFQAATQIQEMTLSFIPKLLALVV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L+++ P++ + SF T + I S L
Sbjct: 61 ALLVAGPWMIQVVVSFSTRLFREIPSLL 88
>gi|52080239|ref|YP_079030.1| flagellar biosynthesis protein FliQ [Bacillus licheniformis ATCC
14580]
gi|52785616|ref|YP_091445.1| flagellar biosynthesis protein FliQ [Bacillus licheniformis ATCC
14580]
gi|319645982|ref|ZP_08000212.1| FliQ protein [Bacillus sp. BT1B_CT2]
gi|52003450|gb|AAU23392.1| flagellar protein [Bacillus licheniformis ATCC 14580]
gi|52348118|gb|AAU40752.1| FliQ [Bacillus licheniformis ATCC 14580]
gi|317391732|gb|EFV72529.1| FliQ protein [Bacillus sp. BT1B_CT2]
Length = 89
Score = 71.0 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 33/87 (37%), Positives = 53/87 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN V+ +A A++ L S P+L A+ +G++++ QA TQIQE TL F+PKI+AV +
Sbjct: 1 MNSEFVISMAERAVYVTLLISGPLLALALLVGLIVSVFQATTQIQEQTLAFIPKIVAVLV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
L++ P++ I SF T + S +
Sbjct: 61 GLVVFGPWMLSTILSFATELFSNLNRF 87
>gi|304404261|ref|ZP_07385923.1| flagellar biosynthetic protein FliQ [Paenibacillus
curdlanolyticus YK9]
gi|304347239|gb|EFM13071.1| flagellar biosynthetic protein FliQ [Paenibacillus
curdlanolyticus YK9]
Length = 89
Score = 71.0 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 34/84 (40%), Positives = 57/84 (67%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ ++ +A A++TIL +SAP+L + +G++++ QA TQIQE TL FVPKI+AVF+
Sbjct: 1 MSAEFIIGLAGQAIYTILKASAPMLIIGLVVGLIVSIFQATTQIQEQTLAFVPKIVAVFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
++II P+I + F +L+ +
Sbjct: 61 SMIIFGPWILNTLVDFTFNLLNNL 84
>gi|269796381|ref|YP_003315836.1| flagellar biosynthetic protein FliQ [Sanguibacter keddieii DSM
10542]
gi|269098566|gb|ACZ23002.1| flagellar biosynthetic protein FliQ [Sanguibacter keddieii DSM
10542]
Length = 90
Score = 71.0 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 35/88 (39%), Positives = 54/88 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ + VL+I + APVL +A+ +G ++ LQ++TQIQEVTL+FVPK IAV +
Sbjct: 1 MDTSAVLDIGVQGLIIAAKLCAPVLITALVVGFAVSLLQSITQIQEVTLSFVPKAIAVSL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L+IS ++ ++ SF + RI L
Sbjct: 61 ALLISGHWMISEMISFTHELFGRIPGLL 88
>gi|319649550|ref|ZP_08003706.1| flagellar biosynthesis protein Q [Bacillus sp. 2_A_57_CT2]
gi|317398712|gb|EFV79394.1| flagellar biosynthesis protein Q [Bacillus sp. 2_A_57_CT2]
Length = 89
Score = 71.0 bits (173), Expect = 6e-11, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 49/84 (58%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ IA + T+L P+L A+ +G++++ QA TQIQE TL F+PKI+AV +
Sbjct: 1 MTPETVISIAERGIITVLMICGPLLILALVVGLVVSIFQATTQIQEQTLAFIPKIVAVLV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
++ P++ + S+ + S +
Sbjct: 61 GVVFFGPWMLSHMLSYANEIFSNL 84
>gi|163758038|ref|ZP_02165126.1| flagellar biosynthesis protein Q [Hoeflea phototrophica DFL-43]
gi|162284327|gb|EDQ34610.1| flagellar biosynthesis protein Q [Hoeflea phototrophica DFL-43]
Length = 88
Score = 70.7 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 52/88 (59%), Positives = 70/88 (79%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEAD L+I + A+WT+L +S P + AMF+G+ IAF+QALTQ+QE+TLTFVPKI+AV I
Sbjct: 1 MNEADALDIVQTAIWTVLVASGPAVGVAMFIGVGIAFVQALTQVQEMTLTFVPKIVAVLI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
T+ +SAPF+G QIS+F +V RI+S
Sbjct: 61 TVAVSAPFVGAQISTFTNIVFQRIESGF 88
>gi|260466597|ref|ZP_05812785.1| flagellar biosynthetic protein FliQ [Mesorhizobium opportunistum
WSM2075]
gi|259029603|gb|EEW30891.1| flagellar biosynthetic protein FliQ [Mesorhizobium opportunistum
WSM2075]
Length = 88
Score = 70.7 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 49/88 (55%), Positives = 70/88 (79%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEAD L+I + A+WT+L++SAPV+ AM +GI IA +QALTQ+QE+TLTFVPKI+A+ +
Sbjct: 1 MNEADALDIVQYAVWTVLTASAPVVLVAMAVGIGIALIQALTQVQEITLTFVPKIVAIML 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+ ++ PFIGGQIS+F ++ RIQ+
Sbjct: 61 VVALTGPFIGGQISAFTNVIFERIQNGF 88
>gi|302343743|ref|YP_003808272.1| flagellar biosynthetic protein FliQ [Desulfarculus baarsii DSM
2075]
gi|301640356|gb|ADK85678.1| flagellar biosynthetic protein FliQ [Desulfarculus baarsii DSM
2075]
Length = 89
Score = 70.7 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 55/88 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN ++ AR M L +APVL M +G+L++ Q++TQIQE+TLTFVPKI+AV +
Sbjct: 1 MNVDFIIGFARQGMEITLLMAAPVLGVGMVVGLLVSIFQSVTQIQEMTLTFVPKILAVMV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L+ P++ ++ ++ ++ I + +
Sbjct: 61 ALLFFGPWMLAKMMNYTESIIQNIPTYI 88
>gi|56419770|ref|YP_147088.1| flagellar biosynthesis protein FliQ [Geobacillus kaustophilus
HTA426]
gi|261419435|ref|YP_003253117.1| flagellar biosynthesis protein FliQ [Geobacillus sp. Y412MC61]
gi|297530590|ref|YP_003671865.1| flagellar biosynthetic protein FliQ [Geobacillus sp. C56-T3]
gi|319766250|ref|YP_004131751.1| flagellar biosynthetic protein FliQ [Geobacillus sp. Y412MC52]
gi|56379612|dbj|BAD75520.1| flagellar protein required for flagellar formation [Geobacillus
kaustophilus HTA426]
gi|261375892|gb|ACX78635.1| flagellar biosynthetic protein FliQ [Geobacillus sp. Y412MC61]
gi|297253842|gb|ADI27288.1| flagellar biosynthetic protein FliQ [Geobacillus sp. C56-T3]
gi|317111116|gb|ADU93608.1| flagellar biosynthetic protein FliQ [Geobacillus sp. Y412MC52]
Length = 89
Score = 70.7 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 53/88 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ ++ +A ++ +L P+L ++ +G++++ QA TQIQE TL FVPKI+AV +
Sbjct: 1 MSADFIIRLAEQGVYIVLVVCGPLLLLSLAVGLVVSIFQAATQIQEQTLAFVPKIVAVLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L+ P++ ++ S+ + + + S +
Sbjct: 61 GLVFFGPWMLSKMVSYAHDIFNNLASFI 88
>gi|27381963|ref|NP_773492.1| flagellar biosynthesis protein FliQ [Bradyrhizobium japonicum
USDA 110]
gi|27355133|dbj|BAC52117.1| flagellar biosynthetic protein [Bradyrhizobium japonicum USDA
110]
Length = 88
Score = 70.3 bits (171), Expect = 7e-11, Method: Composition-based stats.
Identities = 46/88 (52%), Positives = 63/88 (71%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNE D L+I +AA+WTI+ +S P + +AM +G +IA +QALTQIQEVTLTFVPKII + +
Sbjct: 1 MNERDALDIVQAAIWTIIVASGPAVGAAMLVGTIIALIQALTQIQEVTLTFVPKIIVILV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+ IS FIG +S+F +V S I+
Sbjct: 61 VVAISGSFIGAHLSTFTEMVYSHIERGF 88
>gi|114320139|ref|YP_741822.1| flagellar biosynthetic protein FliQ [Alkalilimnicola ehrlichii
MLHE-1]
gi|114226533|gb|ABI56332.1| flagellar biosynthetic protein FliQ [Alkalilimnicola ehrlichii
MLHE-1]
Length = 89
Score = 70.3 bits (171), Expect = 8e-11, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 46/88 (52%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +E+ + A+ + + P+L SA+ G+LI QA TQI E TL+FVPK+ + +
Sbjct: 1 MTPELAIELGKQALTVAVLLAGPILLSALITGLLIGLFQAATQINEQTLSFVPKLGVMAL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L I P++ ++ F + I +
Sbjct: 61 VLFIMTPWMHTILTDFTRQLYRGIPGFI 88
>gi|224370773|ref|YP_002604937.1| FliQ [Desulfobacterium autotrophicum HRM2]
gi|223693490|gb|ACN16773.1| FliQ [Desulfobacterium autotrophicum HRM2]
Length = 89
Score = 70.3 bits (171), Expect = 8e-11, Method: Composition-based stats.
Identities = 35/88 (39%), Positives = 55/88 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+E A+ A+ + S P+L + G++I+ QA+T IQE+TLTFVPKIIAVF+
Sbjct: 1 MTPEFVIEFAKQAILLTIYLSMPMLGLGLAAGLIISIFQAVTSIQEMTLTFVPKIIAVFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L+ AP++ +++SF V+ I +
Sbjct: 61 GLLFFAPWMLDEMTSFTRRVIENIPMYI 88
>gi|239826629|ref|YP_002949253.1| flagellar biosynthesis protein FliQ [Geobacillus sp. WCH70]
gi|239806922|gb|ACS23987.1| flagellar biosynthetic protein FliQ [Geobacillus sp. WCH70]
Length = 89
Score = 70.3 bits (171), Expect = 8e-11, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 52/84 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ V+ +A ++ IL P+L A+ +G++++ QA+TQIQE TL FVPKI+AV I
Sbjct: 1 MSADFVIHMAERGVYMILIVCGPLLLLALAVGLIVSIFQAMTQIQEQTLAFVPKIVAVLI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
LI P++ ++ S+ + + +
Sbjct: 61 GLIFFGPWMLSRMVSYAYEIFNNL 84
>gi|170748119|ref|YP_001754379.1| flagellar biosynthesis protein FliQ [Methylobacterium
radiotolerans JCM 2831]
gi|170654641|gb|ACB23696.1| flagellar biosynthetic protein FliQ [Methylobacterium
radiotolerans JCM 2831]
Length = 88
Score = 70.3 bits (171), Expect = 9e-11, Method: Composition-based stats.
Identities = 50/88 (56%), Positives = 65/88 (73%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNE D LE+ R+A+WTI+ +S P + +AM +GILIA QALTQIQEVTLTFVPKI+ V I
Sbjct: 1 MNEIDALELVRSAIWTIIVASGPAVGAAMVVGILIALFQALTQIQEVTLTFVPKIVVVLI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+I++ F+GGQI +F +V RI S
Sbjct: 61 VMIVTGSFVGGQIYAFTEMVYGRIVSGF 88
>gi|295399825|ref|ZP_06809806.1| flagellar biosynthetic protein FliQ [Geobacillus
thermoglucosidasius C56-YS93]
gi|312111663|ref|YP_003989979.1| flagellar biosynthetic protein FliQ [Geobacillus sp. Y4.1MC1]
gi|294978228|gb|EFG53825.1| flagellar biosynthetic protein FliQ [Geobacillus
thermoglucosidasius C56-YS93]
gi|311216764|gb|ADP75368.1| flagellar biosynthetic protein FliQ [Geobacillus sp. Y4.1MC1]
Length = 89
Score = 70.3 bits (171), Expect = 9e-11, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 54/88 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ V+ +A ++ IL S P+L ++ +G++I+ QA TQIQE TL FVPKI+AV +
Sbjct: 1 MSADFVIRMAEQGVYAILIVSGPLLLLSLAVGLIISIFQATTQIQEQTLAFVPKIVAVLV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L+ P++ +I S+ +L+ + +
Sbjct: 61 GLVFFGPWMLTKIVSYAYEILNNLTKYI 88
>gi|298530623|ref|ZP_07018025.1| flagellar biosynthetic protein FliQ [Desulfonatronospira
thiodismutans ASO3-1]
gi|298509997|gb|EFI33901.1| flagellar biosynthetic protein FliQ [Desulfonatronospira
thiodismutans ASO3-1]
Length = 89
Score = 70.3 bits (171), Expect = 9e-11, Method: Composition-based stats.
Identities = 39/88 (44%), Positives = 56/88 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ AR A+ T L S P+L M +GI I+ LQA TQIQE+TLT VPKIIA+F+
Sbjct: 1 MTPEFVVGFARHAIETTLMISLPMLGIGMIVGITISILQAATQIQEMTLTIVPKIIAIFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L+ S P+I ++ +F T + + I + +
Sbjct: 61 ALLFSFPWIMEKMVTFTTDLFNNIPNYI 88
>gi|153011502|ref|YP_001372716.1| flagellar biosynthesis protein FliQ [Ochrobactrum anthropi ATCC
49188]
gi|239834421|ref|ZP_04682749.1| flagellar biosynthetic protein FliQ [Ochrobactrum intermedium LMG
3301]
gi|151563390|gb|ABS16887.1| flagellar biosynthetic protein FliQ [Ochrobactrum anthropi ATCC
49188]
gi|239822484|gb|EEQ94053.1| flagellar biosynthetic protein FliQ [Ochrobactrum intermedium LMG
3301]
Length = 88
Score = 70.3 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 50/88 (56%), Positives = 65/88 (73%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEAD L+I +A+WT+L +S P + +AM GI IA QALTQIQE+TLTFVPKII +F+
Sbjct: 1 MNEADALDIVNSAIWTVLMASGPAVLAAMLAGIGIALFQALTQIQEMTLTFVPKIIVIFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L ++APF+G QI+SF L SRI+
Sbjct: 61 VLALTAPFVGAQINSFTLLAYSRIEKGF 88
>gi|108757472|ref|YP_630668.1| FliQ/MopD/SpaQ family protein [Myxococcus xanthus DK 1622]
gi|108461352|gb|ABF86537.1| FliQ/MopD/SpaQ family protein [Myxococcus xanthus DK 1622]
Length = 87
Score = 70.3 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 32/80 (40%), Positives = 51/80 (63%)
Query: 9 IARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPF 68
I + A++ +L +SAP + ++ +G +I+ QA TQIQE TLTF PK++AVF L ++ P+
Sbjct: 7 ITQEALFLVLVASAPPVLMSLLVGFIISLFQATTQIQEQTLTFAPKVVAVFGVLALAGPW 66
Query: 69 IGGQISSFVTLVLSRIQSSL 88
IG Q+ F V R + +
Sbjct: 67 IGSQLVRFTFHVFDRFPALI 86
>gi|206603141|gb|EDZ39621.1| flagellar biosynthesis protein FliQ [Leptospirillum sp. Group II
'5-way CG']
Length = 112
Score = 69.9 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 47/86 (54%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN +++ A+ L + PVL ++ +G+L++ QA+TQI E TL+F+PK+ V
Sbjct: 24 MNVQTAIDLTHNALVMALILTLPVLVVSLVIGVLVSLFQAVTQINETTLSFLPKVAGVVG 83
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
L++ P++ Q+ + + +
Sbjct: 84 VLLVLMPWMVRQLIDYTATLFRELPG 109
>gi|311068158|ref|YP_003973081.1| flagellar biosynthesis protein FliQ [Bacillus atrophaeus 1942]
gi|310868675|gb|ADP32150.1| flagellar biosynthesis protein FliQ [Bacillus atrophaeus 1942]
Length = 89
Score = 69.9 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 33/87 (37%), Positives = 52/87 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ V+ +A A++ L S P+L A+ +G++++ QA TQIQE TL F+PKI+AV +
Sbjct: 1 MSSEFVISMAEKAVYVTLLISGPLLAIALLVGLVVSIFQATTQIQEQTLAFIPKIVAVLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
LI P++ I SF T + S +
Sbjct: 61 GLIFFGPWMLSTILSFTTELFSNLNRF 87
>gi|51894126|ref|YP_076817.1| flagellar biosynthetic protein [Symbiobacterium thermophilum IAM
14863]
gi|51857815|dbj|BAD41973.1| flagellar biosynthetic protein [Symbiobacterium thermophilum IAM
14863]
Length = 89
Score = 69.9 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 49/88 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M L++A+ A+ L +APV+ ++ +G++I+ QA TQ+ E +L FVPKI+A
Sbjct: 1 MTPEFALDLAQEAVRVALYVAAPVIGLSLLVGLIISLFQATTQVHEPSLQFVPKILAAVA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L++ P++ + F V+ + +
Sbjct: 61 GLVVFGPWMLTTLMDFARRVMDLLPRMV 88
>gi|152965633|ref|YP_001361417.1| export protein FliQ family 3 [Kineococcus radiotolerans SRS30216]
gi|151360150|gb|ABS03153.1| export protein FliQ family 3 [Kineococcus radiotolerans SRS30216]
Length = 92
Score = 69.9 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 52/88 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + V+ I A+ SAP+L +A+ +G I+ Q++TQ+QE T+ FVPK +AV I
Sbjct: 1 MTDVTVIHIGMTALVLAAKLSAPMLLTALAVGFGISLFQSVTQLQEQTIAFVPKAVAVGI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+++ ++ +++ F + + +I S L
Sbjct: 61 AIVVCGKWMLHELTGFTSTLYGQIPSLL 88
>gi|13472598|ref|NP_104165.1| flagellar biosynthesis protein FliQ [Mesorhizobium loti
MAFF303099]
gi|14023344|dbj|BAB49951.1| flagellar biosynthesis protein; FliQ [Mesorhizobium loti
MAFF303099]
Length = 88
Score = 69.9 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 50/88 (56%), Positives = 70/88 (79%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEAD L+I + A+WT+L++SAPV+ AM +GI IA +QALTQIQE+TLTFVPKI+A+ +
Sbjct: 1 MNEADALDIVQYAVWTVLTASAPVVLVAMAVGIGIALIQALTQIQEITLTFVPKIVAIML 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+ ++ PFIGGQIS+F ++ RIQ+
Sbjct: 61 VVALTGPFIGGQISAFTNVIFQRIQNGF 88
>gi|148266208|ref|YP_001232914.1| flagellar biosynthetic protein FliQ [Geobacter uraniireducens
Rf4]
gi|146399708|gb|ABQ28341.1| flagellar biosynthetic protein FliQ [Geobacter uraniireducens
Rf4]
Length = 89
Score = 69.9 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 48/86 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+++AR + L SAP+L ++ +G+LI+ QA+T I E TL F PKI AV +
Sbjct: 1 MTPELVVQLARRSFEATLLLSAPLLIFSLVVGLLISIFQAVTSINEATLAFAPKIAAVMV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
L+I P++ + F + I +
Sbjct: 61 ALVIFFPWMMSYMGDFTREIYGMIAN 86
>gi|17988509|ref|NP_541142.1| flagellar biosynthesis protein FliQ [Brucella melitensis bv. 1
str. 16M]
gi|23500848|ref|NP_700288.1| flagellar biosynthesis protein FliQ [Brucella suis 1330]
gi|62317951|ref|YP_223804.1| flagellar biosynthesis protein FliQ [Brucella abortus bv. 1 str.
9-941]
gi|83269928|ref|YP_419219.1| flagellar biosynthesis protein FliQ [Brucella melitensis biovar
Abortus 2308]
gi|148558765|ref|YP_001257998.1| flagellar biosynthesis protein FliQ [Brucella ovis ATCC 25840]
gi|161621176|ref|YP_001595062.1| flagellar biosynthesis protein FliQ [Brucella canis ATCC 23365]
gi|163845451|ref|YP_001623106.1| flagellar biosynthesis protein FliQ [Brucella suis ATCC 23445]
gi|225628423|ref|ZP_03786457.1| flagellar biosynthetic protein FliQ [Brucella ceti str. Cudo]
gi|225686879|ref|YP_002734851.1| flagellar biosynthesis protein FliQ [Brucella melitensis ATCC
23457]
gi|237817496|ref|ZP_04596487.1| flagellar biosynthetic protein FliQ [Brucella abortus str. 2308
A]
gi|254691617|ref|ZP_05154871.1| flagellar biosynthesis protein FliQ [Brucella abortus bv. 6 str.
870]
gi|254695087|ref|ZP_05156915.1| flagellar biosynthesis protein FliQ [Brucella abortus bv. 3 str.
Tulya]
gi|254698183|ref|ZP_05160011.1| flagellar biosynthesis protein FliQ [Brucella abortus bv. 2 str.
86/8/59]
gi|254699257|ref|ZP_05161085.1| flagellar biosynthesis protein FliQ [Brucella suis bv. 5 str.
513]
gi|254702377|ref|ZP_05164205.1| flagellar biosynthesis protein FliQ [Brucella suis bv. 3 str.
686]
gi|254711213|ref|ZP_05173024.1| flagellar biosynthesis protein FliQ [Brucella pinnipedialis
B2/94]
gi|254711812|ref|ZP_05173623.1| flagellar biosynthesis protein FliQ [Brucella ceti M644/93/1]
gi|254714881|ref|ZP_05176692.1| flagellar biosynthesis protein FliQ [Brucella ceti M13/05/1]
gi|254720779|ref|ZP_05182590.1| flagellar biosynthesis protein FliQ [Brucella sp. 83/13]
gi|254731628|ref|ZP_05190206.1| flagellar biosynthesis protein FliQ [Brucella abortus bv. 4 str.
292]
gi|256015892|ref|YP_003105901.1| flagellar biosynthesis protein FliQ [Brucella microti CCM 4915]
gi|256030158|ref|ZP_05443772.1| flagellar biosynthesis protein FliQ [Brucella pinnipedialis
M292/94/1]
gi|256042860|ref|ZP_05445806.1| flagellar biosynthesis protein FliQ [Brucella melitensis bv. 1
str. Rev.1]
gi|256059810|ref|ZP_05450005.1| flagellar biosynthesis protein FliQ [Brucella neotomae 5K33]
gi|256112182|ref|ZP_05453103.1| flagellar biosynthesis protein FliQ [Brucella melitensis bv. 3
str. Ether]
gi|256158337|ref|ZP_05456241.1| flagellar biosynthesis protein FliQ [Brucella ceti M490/95/1]
gi|256252729|ref|ZP_05458265.1| flagellar biosynthesis protein FliQ [Brucella ceti B1/94]
gi|256256804|ref|ZP_05462340.1| flagellar biosynthesis protein FliQ [Brucella abortus bv. 9 str.
C68]
gi|256261984|ref|ZP_05464516.1| flagellar biosynthetic protein FliQ [Brucella melitensis bv. 2
str. 63/9]
gi|260166790|ref|ZP_05753601.1| flagellar biosynthesis protein FliQ [Brucella sp. F5/99]
gi|260544136|ref|ZP_05819957.1| flagellar biosynthetic protein FliQ [Brucella abortus NCTC 8038]
gi|260564097|ref|ZP_05834582.1| flagellar biosynthetic protein FliQ [Brucella melitensis bv. 1
str. 16M]
gi|260568720|ref|ZP_05839189.1| flagellar biosynthetic protein FliQ [Brucella suis bv. 4 str. 40]
gi|260757248|ref|ZP_05869596.1| flagellar biosynthetic protein FliQ [Brucella abortus bv. 6 str.
870]
gi|260759387|ref|ZP_05871735.1| flagellar biosynthetic protein FliQ [Brucella abortus bv. 4 str.
292]
gi|260762630|ref|ZP_05874962.1| flagellar biosynthetic protein FliQ [Brucella abortus bv. 2 str.
86/8/59]
gi|260883052|ref|ZP_05894666.1| flagellar biosynthetic protein FliQ [Brucella abortus bv. 9 str.
C68]
gi|261215438|ref|ZP_05929719.1| flagellar biosynthetic protein FliQ [Brucella abortus bv. 3 str.
Tulya]
gi|261216571|ref|ZP_05930852.1| flagellar biosynthetic protein FliQ [Brucella ceti M13/05/1]
gi|261219807|ref|ZP_05934088.1| flagellar biosynthetic protein FliQ [Brucella ceti B1/94]
gi|261318804|ref|ZP_05958001.1| flagellar biosynthetic protein FliQ [Brucella pinnipedialis
B2/94]
gi|261319441|ref|ZP_05958638.1| flagellar biosynthetic protein FliQ [Brucella ceti M644/93/1]
gi|261323790|ref|ZP_05962987.1| flagellar biosynthetic protein FliQ [Brucella neotomae 5K33]
gi|261749696|ref|ZP_05993405.1| flagellar biosynthetic protein FliQ [Brucella suis bv. 5 str.
513]
gi|261752940|ref|ZP_05996649.1| flagellar biosynthetic protein FliQ [Brucella suis bv. 3 str.
686]
gi|261756167|ref|ZP_05999876.1| flagellar biosynthetic protein FliQ [Brucella sp. F5/99]
gi|265985837|ref|ZP_06098572.1| flagellar biosynthetic protein FliQ [Brucella sp. 83/13]
gi|265987189|ref|ZP_06099746.1| flagellar biosynthetic protein FliQ [Brucella pinnipedialis
M292/94/1]
gi|265989295|ref|ZP_06101852.1| flagellar biosynthetic protein FliQ [Brucella melitensis bv. 1
str. Rev.1]
gi|265993609|ref|ZP_06106166.1| flagellar biosynthetic protein FliQ [Brucella melitensis bv. 3
str. Ether]
gi|265996852|ref|ZP_06109409.1| flagellar biosynthetic protein FliQ [Brucella ceti M490/95/1]
gi|294852962|ref|ZP_06793634.1| flagellar biosynthetic protein FliQ [Brucella sp. NVSL 07-0026]
gi|297250157|ref|ZP_06933858.1| flagellar biosynthetic protein FliQ [Brucella abortus bv. 5 str.
B3196]
gi|306845413|ref|ZP_07477987.1| flagellar biosynthetic protein FliQ [Brucella sp. BO1]
gi|17984301|gb|AAL53406.1| flagellar biosynthetic protein fliq [Brucella melitensis bv. 1
str. 16M]
gi|23464512|gb|AAN34293.1| flagellar biosynthesis protein FliQ [Brucella suis 1330]
gi|62198144|gb|AAX76443.1| FliQ, flagellar biosynthesis protein [Brucella abortus bv. 1 str.
9-941]
gi|82940202|emb|CAJ13258.1| Bacterial export protein FliQ, family 3:Flagellar biosynthesis
protein FliQ [Brucella melitensis biovar Abortus 2308]
gi|148370050|gb|ABQ62922.1| flagellar biosynthetic protein FliQ [Brucella ovis ATCC 25840]
gi|161337987|gb|ABX64291.1| flagellar biosynthetic protein FliQ [Brucella canis ATCC 23365]
gi|163676174|gb|ABY40284.1| flagellar biosynthetic protein FliQ [Brucella suis ATCC 23445]
gi|225616269|gb|EEH13317.1| flagellar biosynthetic protein FliQ [Brucella ceti str. Cudo]
gi|225642984|gb|ACO02897.1| flagellar biosynthetic protein FliQ [Brucella melitensis ATCC
23457]
gi|237787331|gb|EEP61548.1| flagellar biosynthetic protein FliQ [Brucella abortus str. 2308
A]
gi|255998552|gb|ACU50239.1| flagellar biosynthesis protein FliQ [Brucella microti CCM 4915]
gi|260097407|gb|EEW81281.1| flagellar biosynthetic protein FliQ [Brucella abortus NCTC 8038]
gi|260151740|gb|EEW86833.1| flagellar biosynthetic protein FliQ [Brucella melitensis bv. 1
str. 16M]
gi|260155385|gb|EEW90466.1| flagellar biosynthetic protein FliQ [Brucella suis bv. 4 str. 40]
gi|260669705|gb|EEX56645.1| flagellar biosynthetic protein FliQ [Brucella abortus bv. 4 str.
292]
gi|260673051|gb|EEX59872.1| flagellar biosynthetic protein FliQ [Brucella abortus bv. 2 str.
86/8/59]
gi|260677356|gb|EEX64177.1| flagellar biosynthetic protein FliQ [Brucella abortus bv. 6 str.
870]
gi|260872580|gb|EEX79649.1| flagellar biosynthetic protein FliQ [Brucella abortus bv. 9 str.
C68]
gi|260917045|gb|EEX83906.1| flagellar biosynthetic protein FliQ [Brucella abortus bv. 3 str.
Tulya]
gi|260918391|gb|EEX85044.1| flagellar biosynthetic protein FliQ [Brucella ceti B1/94]
gi|260921660|gb|EEX88228.1| flagellar biosynthetic protein FliQ [Brucella ceti M13/05/1]
gi|261292131|gb|EEX95627.1| flagellar biosynthetic protein FliQ [Brucella ceti M644/93/1]
gi|261298027|gb|EEY01524.1| flagellar biosynthetic protein FliQ [Brucella pinnipedialis
B2/94]
gi|261299770|gb|EEY03267.1| flagellar biosynthetic protein FliQ [Brucella neotomae 5K33]
gi|261736151|gb|EEY24147.1| flagellar biosynthetic protein FliQ [Brucella sp. F5/99]
gi|261739449|gb|EEY27375.1| flagellar biosynthetic protein FliQ [Brucella suis bv. 5 str.
513]
gi|261742693|gb|EEY30619.1| flagellar biosynthetic protein FliQ [Brucella suis bv. 3 str.
686]
gi|262551149|gb|EEZ07310.1| flagellar biosynthetic protein FliQ [Brucella ceti M490/95/1]
gi|262764479|gb|EEZ10511.1| flagellar biosynthetic protein FliQ [Brucella melitensis bv. 3
str. Ether]
gi|262999964|gb|EEZ12654.1| flagellar biosynthetic protein FliQ [Brucella melitensis bv. 1
str. Rev.1]
gi|263091468|gb|EEZ16004.1| flagellar biosynthetic protein FliQ [Brucella melitensis bv. 2
str. 63/9]
gi|264659386|gb|EEZ29647.1| flagellar biosynthetic protein FliQ [Brucella pinnipedialis
M292/94/1]
gi|264664429|gb|EEZ34690.1| flagellar biosynthetic protein FliQ [Brucella sp. 83/13]
gi|294818617|gb|EFG35617.1| flagellar biosynthetic protein FliQ [Brucella sp. NVSL 07-0026]
gi|297174026|gb|EFH33390.1| flagellar biosynthetic protein FliQ [Brucella abortus bv. 5 str.
B3196]
gi|306274156|gb|EFM55972.1| flagellar biosynthetic protein FliQ [Brucella sp. BO1]
gi|326411297|gb|ADZ68361.1| flagellar biosynthesis protein FliQ [Brucella melitensis M28]
gi|326554586|gb|ADZ89225.1| flagellar biosynthesis protein FliQ [Brucella melitensis M5-90]
Length = 88
Score = 69.9 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 49/88 (55%), Positives = 66/88 (75%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEAD L+I +A+WT+L++S P + +AM GI IA QALTQIQE+TLTFVPKII +F+
Sbjct: 1 MNEADALDIVNSAIWTVLTASGPAVLAAMLAGIGIALFQALTQIQEMTLTFVPKIIVIFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L ++APF+G QI++F L SRI+
Sbjct: 61 VLALTAPFVGAQINAFTLLAYSRIEKGF 88
>gi|88704276|ref|ZP_01101990.1| Bacterial export protein FliQ, family 3 [Congregibacter litoralis
KT71]
gi|88701327|gb|EAQ98432.1| Bacterial export protein FliQ, family 3 [Congregibacter litoralis
KT71]
Length = 89
Score = 69.9 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 54/88 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M VL + + A+W + + P+L SA+ +G+LI QA TQIQE+TL+F+PK++A+ +
Sbjct: 1 MGPETVLAVGQDALWLAVLLAGPLLLSALAVGLLIGIFQAATQIQEMTLSFIPKLLALVV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L ++ P++ + SF + I S L
Sbjct: 61 ALFVAGPWMIQVVVSFSRRLFLEIPSLL 88
>gi|251797427|ref|YP_003012158.1| flagellar biosynthetic protein FliQ [Paenibacillus sp. JDR-2]
gi|247545053|gb|ACT02072.1| flagellar biosynthetic protein FliQ [Paenibacillus sp. JDR-2]
Length = 89
Score = 69.9 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 37/84 (44%), Positives = 57/84 (67%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ ++ +A A+ T+L +SAP+L A+ +G++I+ QA TQIQE TL FVPKI+AVF+
Sbjct: 1 MSADFIIGLAGQAISTVLKASAPMLVLALVVGLIISIFQATTQIQEQTLAFVPKIVAVFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
+LII P+I I F +L+ +
Sbjct: 61 SLIIFGPWILNVIVDFTYNLLNNL 84
>gi|326204609|ref|ZP_08194465.1| flagellar biosynthetic protein FliQ [Clostridium papyrosolvens
DSM 2782]
gi|325985176|gb|EGD46016.1| flagellar biosynthetic protein FliQ [Clostridium papyrosolvens
DSM 2782]
Length = 89
Score = 69.9 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 53/88 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E+ ++ IA+ A+ IL SAP+L +M +G++I+ QA TQIQE TLTFVPKI++V
Sbjct: 1 MDESSIINIAQEALKVILYVSAPILVISMVVGLVISIFQATTQIQEQTLTFVPKILSVVA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+ + ++ + + + I +
Sbjct: 61 AIALFGSWMLRVLIEYTQNIFININQFI 88
>gi|261855325|ref|YP_003262608.1| flagellar biosynthetic protein FliQ [Halothiobacillus
neapolitanus c2]
gi|261835794|gb|ACX95561.1| flagellar biosynthetic protein FliQ [Halothiobacillus
neapolitanus c2]
Length = 89
Score = 69.5 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 55/88 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ VL++ R AM IL S P+L +A+ +G+L+ QA TQI E+TL+F+PK+ AV +
Sbjct: 1 MSPDTVLDLTRQAMVIILLLSMPILLTALAVGLLVGMFQAATQINEMTLSFIPKLFAVVL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
++++ P++ + F T + RI +
Sbjct: 61 AILLAGPWMLHLLVDFTTDLFHRIPGLI 88
>gi|222084891|ref|YP_002543420.1| flagellar biosynthesis transmembrane protein [Agrobacterium
radiobacter K84]
gi|221722339|gb|ACM25495.1| flagellar biosynthesis transmembrane protein [Agrobacterium
radiobacter K84]
Length = 88
Score = 69.5 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 54/88 (61%), Positives = 70/88 (79%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEAD L+I +AA+WT+L +S P + +AM +G++IA +QALTQ+QE TLTFVPKI+AV +
Sbjct: 1 MNEADALDIFQAAIWTVLVASGPAVLAAMVVGLVIALIQALTQVQEATLTFVPKIVAVMV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
T+ ISAPF+G QIS F LV SRIQS
Sbjct: 61 TVGISAPFVGSQISIFTNLVFSRIQSGF 88
>gi|256376456|ref|YP_003100116.1| export protein FliQ family 3 [Actinosynnema mirum DSM 43827]
gi|255920759|gb|ACU36270.1| export protein FliQ family 3 [Actinosynnema mirum DSM 43827]
Length = 90
Score = 69.5 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 35/88 (39%), Positives = 55/88 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN+ V+E+ AM +APVL +A+ +G I+ Q++TQIQEVTL+FVPK V +
Sbjct: 1 MNDTTVVELGSNAMMITAKLAAPVLLTALLIGFTISLFQSVTQIQEVTLSFVPKAAGVCV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L++S ++ +I +F T + RI S +
Sbjct: 61 ALLLSGSWMVHEIITFTTDLFGRIPSLV 88
>gi|319781659|ref|YP_004141135.1| flagellar biosynthetic protein FliQ [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317167547|gb|ADV11085.1| flagellar biosynthetic protein FliQ [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 88
Score = 69.5 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 48/88 (54%), Positives = 68/88 (77%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEAD L+I + A+WT+L +SAPV+ AM +GI IA +QALTQ+QE+TLTFVPKI+A+ +
Sbjct: 1 MNEADALDIVQYAVWTVLVASAPVVLVAMVVGIGIALIQALTQVQEITLTFVPKIVAIML 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+ ++ PFIG QIS+F ++ RIQ+
Sbjct: 61 VVALTGPFIGSQISAFTNVIFERIQNGF 88
>gi|126653732|ref|ZP_01725650.1| flagellar biosynthesis protein Q [Bacillus sp. B14905]
gi|126589696|gb|EAZ83832.1| flagellar biosynthesis protein Q [Bacillus sp. B14905]
Length = 89
Score = 69.5 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 51/88 (57%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ +A A+ IL +S P+L A+ G+ ++ QA T IQE TL FVPKIIAVF+
Sbjct: 1 MTGELVISVAERAIMIILLTSGPLLLVALITGLAVSIFQATTSIQEQTLAFVPKIIAVFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
++ P++ Q++S+ + + +
Sbjct: 61 AIVFFGPWMLSQVTSYARDIFENLTRYI 88
>gi|332702321|ref|ZP_08422409.1| flagellar biosynthetic protein FliQ [Desulfovibrio africanus str.
Walvis Bay]
gi|332552470|gb|EGJ49514.1| flagellar biosynthetic protein FliQ [Desulfovibrio africanus str.
Walvis Bay]
Length = 89
Score = 69.5 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/88 (43%), Positives = 55/88 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ AR A+ L+ S P+L M +GI ++ LQA TQIQE+TLTFVPKIIA+FI
Sbjct: 1 MTPEFVIGFARQAIELTLTISLPLLGIGMIVGIFVSVLQAATQIQEMTLTFVPKIIAIFI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L++ P+I ++ ++ +L S L
Sbjct: 61 ALLLFFPWIMDKMITYTRDLLINFPSYL 88
>gi|39545584|gb|AAR27891.1| AscS [Aeromonas hydrophila]
Length = 105
Score = 69.5 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 36/85 (42%), Positives = 53/85 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ AD+L +W +L S P + A +G L++ LQALTQIQE TL FV K+IAV I
Sbjct: 18 MSHADILHFTSQTLWLVLILSMPPVLVAALVGTLVSLLQALTQIQEQTLGFVAKLIAVVI 77
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
TL + ++G ++ SF +VL ++
Sbjct: 78 TLFATTAWLGNELYSFADMVLFKVP 102
>gi|254473481|ref|ZP_05086878.1| flagellar biosynthetic protein FliQ [Pseudovibrio sp. JE062]
gi|211957597|gb|EEA92800.1| flagellar biosynthetic protein FliQ [Pseudovibrio sp. JE062]
Length = 88
Score = 69.5 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 45/88 (51%), Positives = 65/88 (73%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEAD L+I R A+WT+++++ P + AMF+G++IA QALTQIQE+TLTF+PKI+ +FI
Sbjct: 1 MNEADALDIVRTAIWTVITATGPAVAGAMFVGLIIALFQALTQIQEMTLTFIPKIVVIFI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+ ++ PFIG QI S +V RI+
Sbjct: 61 LIAMTGPFIGSQIFSLTEMVYGRIEHGF 88
>gi|308173599|ref|YP_003920304.1| flagellar export protein [Bacillus amyloliquefaciens DSM 7]
gi|307606463|emb|CBI42834.1| component of the flagellar export machinery [Bacillus
amyloliquefaciens DSM 7]
gi|328553469|gb|AEB23961.1| flagellar biosynthesis protein FliQ [Bacillus amyloliquefaciens
TA208]
Length = 89
Score = 69.5 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 33/87 (37%), Positives = 51/87 (58%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ V+ +A A++ L P+L A+ +G+L++ QA TQIQE TL F+PKI+AV +
Sbjct: 1 MSSEFVISMAEKAVYVTLMICGPLLAIALIVGLLVSIFQATTQIQEQTLAFIPKIVAVML 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
LI P++ I SF T + S +
Sbjct: 61 GLIFFGPWMLSTILSFTTDLFSHLNRF 87
>gi|121602368|ref|YP_989377.1| flagellar biosynthesis protein FliQ [Bartonella bacilliformis
KC583]
gi|120614545|gb|ABM45146.1| flagellar biosynthetic protein FliQ [Bartonella bacilliformis
KC583]
Length = 88
Score = 69.5 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 48/88 (54%), Positives = 68/88 (77%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEAD +++ AA+WT+L +S P + +AM +GI+IA QALTQIQE+TLTF+PKII +F+
Sbjct: 1 MNEADAIDMVTAAIWTVLIASGPAVLAAMSVGIIIALFQALTQIQEMTLTFIPKIIVIFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L +APF+GGQI +F LV +RI++
Sbjct: 61 VLAFTAPFVGGQIYAFTQLVYNRIEAGF 88
>gi|304316892|ref|YP_003852037.1| flagellar biosynthetic protein FliQ [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778394|gb|ADL68953.1| flagellar biosynthetic protein FliQ [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 89
Score = 69.5 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 57/88 (64%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ VL+I R A+ + SAP+L ++ +G++I+ QA TQIQE TLTFVPKI+A+F
Sbjct: 1 MDPGVVLDIGREALMVTMIVSAPLLIVSLLIGLIISIFQATTQIQEQTLTFVPKILAIFA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
++I+ P++ + ++ ++ I + +
Sbjct: 61 SIILFGPWMLTILINYTQKLILNINNFI 88
>gi|237653573|ref|YP_002889887.1| flagellar biosynthesis protein FliQ [Thauera sp. MZ1T]
gi|237624820|gb|ACR01510.1| flagellar biosynthetic protein FliQ [Thauera sp. MZ1T]
Length = 89
Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 57/88 (64%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+E+ R A+ L SAP+ +A+ G++I+ QA TQI E+TL+FVPK++A+F+
Sbjct: 1 MTPTTVIELGRQAIEVTLMVSAPLFLAALVTGLIISIFQAATQINEMTLSFVPKLVAIFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
TL+++ P++ ++ F+ + I + +
Sbjct: 61 TLVLAGPWMITLLTDFIRRLFESIPAMI 88
>gi|319409163|emb|CBI82807.1| Flagellar biosynthetic protein FliQ [Bartonella schoenbuchensis
R1]
Length = 88
Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 49/88 (55%), Positives = 68/88 (77%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEAD +++ AA+WTIL +S P + +AM +GI IA QALTQ+QE+TLTF+PKII +F+
Sbjct: 1 MNEADAIDMVTAAIWTILIASGPAVLAAMSIGICIALFQALTQVQEMTLTFIPKIIIIFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L ++APFIGGQI +F LV +RI++
Sbjct: 61 VLALTAPFIGGQIYAFTQLVYNRIETGF 88
>gi|149182520|ref|ZP_01860993.1| flagellar biosynthesis protein Q [Bacillus sp. SG-1]
gi|148849780|gb|EDL63957.1| flagellar biosynthesis protein Q [Bacillus sp. SG-1]
Length = 89
Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 52/88 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN V+ +A ++T L P+L A+ +G+ ++ QA TQIQE TL F+PKI+AV +
Sbjct: 1 MNAESVIALAERGVYTTLVICGPLLLLALVVGLAVSIFQATTQIQEQTLAFIPKIVAVLV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
++ P++ ++ ++ + + S + +
Sbjct: 61 GVVFFGPWMLTKLVTYASDIFSNLNRFV 88
>gi|319407000|emb|CBI80637.1| Flagellar biosynthetic protein fliQ [Bartonella sp. 1-1C]
Length = 88
Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 50/88 (56%), Positives = 70/88 (79%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEAD +++ AA+WTIL++S P +F+AM +GI+IA QALTQIQE+TLTF+PKII +F+
Sbjct: 1 MNEADAIDMVTAAIWTILTASGPAVFAAMSVGIIIALFQALTQIQEMTLTFIPKIIIIFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L +APF+GGQI +F LV +RI++
Sbjct: 61 VLAFTAPFVGGQIYAFTQLVYNRIETGF 88
>gi|319405427|emb|CBI79046.1| Flagellar biosynthetic protein FliQ [Bartonella sp. AR 15-3]
Length = 88
Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 49/88 (55%), Positives = 69/88 (78%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEAD +++ AA+WT+L++S P +F+AM GI+IA QALTQIQE+TLTF+PKII +F+
Sbjct: 1 MNEADAIDMVTAAIWTVLTASGPAVFAAMSTGIIIALFQALTQIQEMTLTFIPKIIIIFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L +APF+GGQI +F LV +RI++
Sbjct: 61 VLAFTAPFVGGQIYAFTQLVYNRIETGF 88
>gi|205373390|ref|ZP_03226194.1| flagellar biosynthesis protein FliQ [Bacillus coahuilensis m4-4]
Length = 89
Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 53/88 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN V+++A ++T L SAP+L A+ +G++++ QA TQIQE TL FVPKI+AV +
Sbjct: 1 MNAETVIKLAEQGVYTTLIISAPLLLLALIVGLIVSIFQATTQIQEQTLAFVPKIVAVMV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
LI P++ + ++ + + +
Sbjct: 61 GLIFFGPWMLTTLVTYTLNIFQNLSRYI 88
>gi|296133032|ref|YP_003640279.1| flagellar biosynthetic protein FliQ [Thermincola sp. JR]
gi|296031610|gb|ADG82378.1| flagellar biosynthetic protein FliQ [Thermincola potens JR]
Length = 89
Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 52/88 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M ++ I R A+ T+L S P+L +++ +G++I+ QA T IQE TLTFVPKI+ +
Sbjct: 1 MTPETIIGIGRDALITVLLISTPILATSLLIGVIISVFQAATHIQEQTLTFVPKILGILG 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+++ ++ + S+ + + + S +
Sbjct: 61 AIVLFGSWMLNVLLSYTSNIFINLPSYI 88
>gi|317129192|ref|YP_004095474.1| flagellar biosynthetic protein FliQ [Bacillus cellulosilyticus
DSM 2522]
gi|315474140|gb|ADU30743.1| flagellar biosynthetic protein FliQ [Bacillus cellulosilyticus
DSM 2522]
Length = 89
Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 55/88 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN+ V+ +A ++T++ + P+L +A+ +G+L++ QA TQIQE TL F+PKI+ V +
Sbjct: 1 MNQETVISLAERGVYTVIMIAGPLLITALAIGLLVSIFQATTQIQEQTLAFIPKIVGVLV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
LI+ P++ I SF + S + +
Sbjct: 61 ALIVFGPWMLSIIISFAEQIFSNLHHFI 88
>gi|242281273|ref|YP_002993402.1| flagellar biosynthetic protein FliQ [Desulfovibrio salexigens DSM
2638]
gi|242124167|gb|ACS81863.1| flagellar biosynthetic protein FliQ [Desulfovibrio salexigens DSM
2638]
Length = 89
Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 54/88 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ A+ ++ L+ + P+L + +GI ++ +QA TQIQE+TLTFVPKI+++F+
Sbjct: 1 MTPEFVIGFAKQSIELALTLALPMLMVGLVVGIFVSVIQAATQIQEMTLTFVPKIVSMFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L+ + P+I ++ F + + + +
Sbjct: 61 ALLFAFPWIMDKMIDFTRNIFLNLPNYI 88
>gi|225375340|ref|ZP_03752561.1| hypothetical protein ROSEINA2194_00965 [Roseburia inulinivorans
DSM 16841]
gi|225212829|gb|EEG95183.1| hypothetical protein ROSEINA2194_00965 [Roseburia inulinivorans
DSM 16841]
Length = 90
Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 40/87 (45%), Positives = 58/87 (66%)
Query: 2 NEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFIT 61
E VL+IA+ A++ I+ SAPVL ++ +G++I+ Q +T IQE TLTFVPKI+AVFI
Sbjct: 3 TEGQVLDIAKDAIYYIIICSAPVLIISLVVGLIISIFQTVTSIQEQTLTFVPKIVAVFIG 62
Query: 62 LIISAPFIGGQISSFVTLVLSRIQSSL 88
L++ +I Q+S FVT + S L
Sbjct: 63 LMVCGSWILNQLSEFVTTLWSNFSIYL 89
>gi|138894756|ref|YP_001125209.1| flagellar biosynthesis protein FliQ [Geobacillus
thermodenitrificans NG80-2]
gi|196247622|ref|ZP_03146324.1| flagellar biosynthetic protein FliQ [Geobacillus sp. G11MC16]
gi|134266269|gb|ABO66464.1| Flagellar protein required for Flagellar formation [Geobacillus
thermodenitrificans NG80-2]
gi|196212406|gb|EDY07163.1| flagellar biosynthetic protein FliQ [Geobacillus sp. G11MC16]
Length = 89
Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 55/88 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ ++ +A ++ +L P+L ++ +G++++ QA TQIQE TLTFVPKIIAV +
Sbjct: 1 MSADLIIRLAEQGVYIVLIVCGPLLLLSLIVGLVVSIFQAATQIQEQTLTFVPKIIAVLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L++ P++ ++ S+ + + + S +
Sbjct: 61 GLVLFGPWMLSKMVSYAHDIFNNLASFI 88
>gi|312135837|ref|YP_004003175.1| flagellar biosynthetic protein fliq [Caldicellulosiruptor
owensensis OL]
gi|311775888|gb|ADQ05375.1| flagellar biosynthetic protein FliQ [Caldicellulosiruptor
owensensis OL]
Length = 89
Score = 68.7 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 36/88 (40%), Positives = 54/88 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN VLEIAR A+ T + P+L +M +GI+I+ LQA TQI E TLTFVPK+IA+ +
Sbjct: 1 MNTELVLEIARQAILTAFYVAGPILLVSMVVGIVISILQAATQINEQTLTFVPKLIAIAL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+L+I ++ ++ F + I +
Sbjct: 61 SLLIFGQWMLAKVVEFTRYLWVNINQFI 88
>gi|319403984|emb|CBI77572.1| Flagellar biosynthetic protein FliQ [Bartonella rochalimae ATCC
BAA-1498]
Length = 88
Score = 68.7 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 50/88 (56%), Positives = 69/88 (78%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEAD +++ AA+WTIL++S P +F+AM GI+IA QALTQIQE+TLTF+PKII +F+
Sbjct: 1 MNEADAIDMVTAAIWTILTASGPAVFAAMSAGIIIALFQALTQIQEMTLTFIPKIIIIFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L +APF+GGQI +F LV +RI++
Sbjct: 61 VLAFTAPFVGGQIYAFTQLVYNRIETGF 88
>gi|319898662|ref|YP_004158755.1| flagellar biosynthetic protein FliQ [Bartonella clarridgeiae 73]
gi|319402626|emb|CBI76171.1| Flagellar biosynthetic protein FliQ [Bartonella clarridgeiae 73]
Length = 88
Score = 68.7 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 48/88 (54%), Positives = 68/88 (77%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEAD +++ AA+WTIL++S P + +AM G++IA QALTQIQE+TLTF+PKII +F+
Sbjct: 1 MNEADAIDMVTAAIWTILTASGPAVLAAMSAGVIIALFQALTQIQEMTLTFIPKIIIIFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L +APF+GGQI +F LV +RI++
Sbjct: 61 VLAFTAPFVGGQIYAFTQLVYNRIETGF 88
>gi|121533745|ref|ZP_01665572.1| flagellar biosynthetic protein FliQ [Thermosinus carboxydivorans
Nor1]
gi|121307736|gb|EAX48651.1| flagellar biosynthetic protein FliQ [Thermosinus carboxydivorans
Nor1]
Length = 89
Score = 68.7 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 54/88 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ ++I R A+ ++ SAP+L + +GI+I+ QA TQIQE TL+FVPKIIAVF+
Sbjct: 1 MSGDLAIQIGRDALMMVMLVSAPMLGLGLLVGIIISIFQATTQIQEQTLSFVPKIIAVFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+++ P++ + + + + + +
Sbjct: 61 AILLFGPWMLSLMVDYTRQIFISLPNLI 88
>gi|89098627|ref|ZP_01171509.1| flagellar biosynthesis protein Q [Bacillus sp. NRRL B-14911]
gi|89086589|gb|EAR65708.1| flagellar biosynthesis protein Q [Bacillus sp. NRRL B-14911]
Length = 89
Score = 68.7 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 51/84 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ V+ IA + ++L S P+L A+ +G++++ QA TQIQE TL FVPKI+AV +
Sbjct: 1 MSPETVISIAEQGIMSVLYISGPLLVLALVVGLIVSIFQATTQIQEQTLAFVPKIVAVLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
++ P++ + S+ + S +
Sbjct: 61 GVVFFGPWMLSHMLSYTNEIFSNL 84
>gi|218680427|ref|ZP_03528324.1| flagellar biosynthesis protein FliQ [Rhizobium etli CIAT 894]
Length = 88
Score = 68.7 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 49/88 (55%), Positives = 69/88 (78%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEAD L++ +AA+WT+L +S P + +AM +G++IA +QALTQ+QE TLTFVPKI+AV +
Sbjct: 1 MNEADALDLFQAAIWTVLIASGPAVLAAMVVGLVIALIQALTQVQEATLTFVPKIVAVLV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+ ++APF+G Q+S F LV SRIQS
Sbjct: 61 VVGVTAPFVGSQVSIFTNLVFSRIQSGF 88
>gi|253573535|ref|ZP_04850878.1| flagellar biosynthetic protein FliQ [Paenibacillus sp. oral taxon
786 str. D14]
gi|251847063|gb|EES75068.1| flagellar biosynthetic protein FliQ [Paenibacillus sp. oral taxon
786 str. D14]
Length = 89
Score = 68.7 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 34/88 (38%), Positives = 57/88 (64%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ ++ +A A++T+L SAP+L A+ +G+L++ QA TQIQE TL FVPKI+AV +
Sbjct: 1 MSSEFIIGLAGQAVYTVLKVSAPMLVIALVVGLLVSIFQATTQIQEQTLAFVPKIVAVLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L++ P+I + F +L+ + S +
Sbjct: 61 ALLLFGPWILTTLVDFTYGILNNLSSYI 88
>gi|86356336|ref|YP_468228.1| flagellar biosynthesis protein FliQ [Rhizobium etli CFN 42]
gi|86280438|gb|ABC89501.1| flagellar biosynthesis transmembrane protein [Rhizobium etli CFN
42]
Length = 88
Score = 68.7 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 51/88 (57%), Positives = 69/88 (78%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEAD L++ +AA+WT+L +S P + +AM +G++IA +QALTQ+QE TLTFVPKI+AV +
Sbjct: 1 MNEADALDLFQAAIWTVLIASGPAVLAAMVVGLVIALIQALTQVQEATLTFVPKIVAVLV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+ I+APF+G QIS F LV SRIQS
Sbjct: 61 VVGITAPFVGSQISIFTNLVFSRIQSGF 88
>gi|78224288|ref|YP_386035.1| flagellar biosynthesis protein FliQ [Geobacter metallireducens
GS-15]
gi|78195543|gb|ABB33310.1| Flagellar biosynthesis protein FliQ [Geobacter metallireducens
GS-15]
Length = 89
Score = 68.7 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 32/86 (37%), Positives = 52/86 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ V+++AR + L SAP+L S + +G+LI+ QA+T IQE TL F PKII V +
Sbjct: 1 MSPDLVVQLARRSFEVTLLLSAPLLISGLVVGLLISIFQAVTSIQEATLAFAPKIIIVMV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
++I P++ +S F + + I +
Sbjct: 61 AMVIFFPWMMSYMSDFTRELYALIPN 86
>gi|154686053|ref|YP_001421214.1| flagellar biosynthesis protein FliQ [Bacillus amyloliquefaciens
FZB42]
gi|154351904|gb|ABS73983.1| FliQ [Bacillus amyloliquefaciens FZB42]
Length = 89
Score = 68.7 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 34/87 (39%), Positives = 52/87 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ V+ +A A++ L S P+L A+ +G+L++ QA TQIQE TL F+PKI+AV +
Sbjct: 1 MSSEFVISMAEKAVYVTLMISGPLLAIALIVGLLVSIFQATTQIQEQTLAFIPKIVAVML 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
LI P++ I SF T + S +
Sbjct: 61 GLIFFGPWMLSTILSFTTDLFSHLNRF 87
>gi|254706502|ref|ZP_05168330.1| flagellar biosynthesis protein FliQ [Brucella pinnipedialis
M163/99/10]
gi|261313956|ref|ZP_05953153.1| flagellar biosynthetic protein FliQ [Brucella pinnipedialis
M163/99/10]
gi|261302982|gb|EEY06479.1| flagellar biosynthetic protein FliQ [Brucella pinnipedialis
M163/99/10]
Length = 88
Score = 68.7 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 48/88 (54%), Positives = 65/88 (73%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNE D L+I +A+WT+L++S P + +AM GI IA QALTQIQE+TLTFVPKII +F+
Sbjct: 1 MNEVDALDIVNSAIWTVLTASGPAVLAAMLAGIGIALFQALTQIQEMTLTFVPKIIVIFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L ++APF+G QI++F L SRI+
Sbjct: 61 VLALTAPFVGAQINAFTLLAYSRIEKGF 88
>gi|157692316|ref|YP_001486778.1| flagellar biosynthesis protein FliQ [Bacillus pumilus SAFR-032]
gi|194014415|ref|ZP_03053032.1| flagellar biosynthetic protein FliQ [Bacillus pumilus ATCC 7061]
gi|157681074|gb|ABV62218.1| flagellar biosynthesis protein FliQ [Bacillus pumilus SAFR-032]
gi|194013441|gb|EDW23006.1| flagellar biosynthetic protein FliQ [Bacillus pumilus ATCC 7061]
Length = 89
Score = 68.7 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 54/84 (64%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ V+ +A +++ +L S P+L A+ +G++++ QA TQIQE TL F+PKI+AV I
Sbjct: 1 MSSEFVITMAERSVYVVLLVSGPLLALALIVGLIVSVFQATTQIQEQTLAFIPKIVAVLI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
L++ P++ I SF T + S +
Sbjct: 61 GLVVFGPWMLSTIVSFTTELFSNL 84
>gi|291613057|ref|YP_003523214.1| flagellar biosynthetic protein FliQ [Sideroxydans lithotrophicus
ES-1]
gi|291583169|gb|ADE10827.1| flagellar biosynthetic protein FliQ [Sideroxydans lithotrophicus
ES-1]
Length = 89
Score = 68.7 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 54/85 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ I + A+ + SAP L +A+ +G+L++ QA TQI E+TL+F+PK++ F+
Sbjct: 1 MTPESVMTIGQQALELTIMVSAPPLLTALIIGLLVSIFQAATQINELTLSFIPKLLGAFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
LIIS P++ G + ++T + S I
Sbjct: 61 VLIISGPWMIGILLDYITRLFSSIP 85
>gi|16078699|ref|NP_389518.1| flagellar biosynthesis protein FliQ [Bacillus subtilis subsp.
subtilis str. 168]
gi|221309514|ref|ZP_03591361.1| flagellar biosynthesis protein FliQ [Bacillus subtilis subsp.
subtilis str. 168]
gi|221313838|ref|ZP_03595643.1| flagellar biosynthesis protein FliQ [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221318761|ref|ZP_03600055.1| flagellar biosynthesis protein FliQ [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221323033|ref|ZP_03604327.1| flagellar biosynthesis protein FliQ [Bacillus subtilis subsp.
subtilis str. SMY]
gi|296330851|ref|ZP_06873326.1| flagellar biosynthesis protein FliQ [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305674369|ref|YP_003866041.1| flagellar export machinery protein [Bacillus subtilis subsp.
spizizenii str. W23]
gi|321315403|ref|YP_004207690.1| flagellar biosynthesis protein FliQ [Bacillus subtilis BSn5]
gi|544316|sp|P35535|FLIQ_BACSU RecName: Full=Flagellar biosynthetic protein FliQ
gi|142932|gb|AAA22454.1| flagellar protein [Bacillus subtilis]
gi|2634008|emb|CAB13509.1| component of the flagellar export machinery [Bacillus subtilis
subsp. subtilis str. 168]
gi|296151856|gb|EFG92730.1| flagellar biosynthesis protein FliQ [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305412613|gb|ADM37732.1| component of the flagellar export machinery [Bacillus subtilis
subsp. spizizenii str. W23]
gi|320021677|gb|ADV96663.1| flagellar biosynthesis protein FliQ [Bacillus subtilis BSn5]
Length = 89
Score = 68.7 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 33/87 (37%), Positives = 52/87 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ V+ +A A++ L S P+L A+ +G++++ QA TQIQE TL F+PKI+AV +
Sbjct: 1 MSSEFVISMAEKAVYVTLMISGPLLAIALLVGLIVSIFQATTQIQEQTLAFIPKIVAVLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
LI P++ I SF T + S +
Sbjct: 61 ALIFFGPWMLSTILSFTTELFSNLNRF 87
>gi|299534770|ref|ZP_07048100.1| flagellar biosynthetic protein [Lysinibacillus fusiformis ZC1]
gi|298729858|gb|EFI70403.1| flagellar biosynthetic protein [Lysinibacillus fusiformis ZC1]
Length = 89
Score = 68.3 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 50/88 (56%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ IA A+ IL +S P+L A+ G+ ++ QA T IQE TL FVPKIIAV +
Sbjct: 1 MTGELVISIAERAIMIILLTSGPLLLVALISGLAVSIFQATTSIQEQTLAFVPKIIAVLV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
++ P++ Q++S+ + + +
Sbjct: 61 AIVFFGPWMLSQVTSYARDIFENLTRYI 88
>gi|120554900|ref|YP_959251.1| flagellar biosynthesis protein FliQ [Marinobacter aquaeolei VT8]
gi|120324749|gb|ABM19064.1| flagellar biosynthetic protein FliQ [Marinobacter aquaeolei VT8]
Length = 89
Score = 68.3 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 50/85 (58%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V++I R A+W I+ SA ++ + +G++++ QA TQI E TL+F+P+++ I
Sbjct: 1 MTPETVIDILREALWLIVLLSAVIIGPGLVIGLVVSTFQAATQINEQTLSFLPRLLITLI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
+I + P++ + ++SRI
Sbjct: 61 VIIAAGPWMLTTLLDHANGLISRIP 85
>gi|209963541|ref|YP_002296456.1| flagellar biosynthesis protein FliQ [Rhodospirillum centenum SW]
gi|209957007|gb|ACI97643.1| flagellar biosynthesis protein FliQ [Rhodospirillum centenum SW]
Length = 88
Score = 68.3 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 40/84 (47%), Positives = 63/84 (75%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEADV E+ RA +W + ++ PVL A+ +G I+ LQALTQ+QE TL+FVPKI+A+ +
Sbjct: 1 MNEADVFELVRAGIWAAVWAAGPVLAVALLVGFGISLLQALTQLQEATLSFVPKIVAMLV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
T++++ PF+ G +++F V++RI
Sbjct: 61 TIVLALPFMYGVLATFTEQVVARI 84
>gi|308068669|ref|YP_003870274.1| flagellar biosynthetic protein fliQ [Paenibacillus polymyxa E681]
gi|310641560|ref|YP_003946318.1| flagellar biosynthetic protein fliq [Paenibacillus polymyxa SC2]
gi|305857948|gb|ADM69736.1| Flagellar biosynthetic protein fliQ [Paenibacillus polymyxa E681]
gi|309246510|gb|ADO56077.1| Flagellar biosynthetic protein FliQ [Paenibacillus polymyxa SC2]
Length = 89
Score = 68.3 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 51/84 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M ++ +A A++ +L SAP+L + +G++I+ QA TQIQE TL FVPKI+AV +
Sbjct: 1 MTSEFIISLAGQAVYIVLKVSAPMLILGLVVGLIISIFQATTQIQEQTLAFVPKIVAVLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
L++ P+I + F +L +
Sbjct: 61 ALLLFGPWILTTLVDFTYNILDNL 84
>gi|116250506|ref|YP_766344.1| flagellar biosynthesis protein FliQ [Rhizobium leguminosarum bv.
viciae 3841]
gi|218461406|ref|ZP_03501497.1| flagellar biosynthesis protein FliQ [Rhizobium etli Kim 5]
gi|218662877|ref|ZP_03518807.1| flagellar biosynthesis protein FliQ [Rhizobium etli IE4771]
gi|218671389|ref|ZP_03521059.1| flagellar biosynthesis protein FliQ [Rhizobium etli GR56]
gi|241203130|ref|YP_002974226.1| flagellar biosynthesis protein FliQ [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|115255154|emb|CAK06228.1| flagellar biosynthetic protein FliQ [Rhizobium leguminosarum bv.
viciae 3841]
gi|240857020|gb|ACS54687.1| flagellar biosynthetic protein FliQ [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 88
Score = 68.3 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 51/88 (57%), Positives = 70/88 (79%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEAD L++ +AA+WT+L ++ P + +AM +G++IA +QALTQ+QE TLTFVPKI+AV I
Sbjct: 1 MNEADALDLFQAAIWTVLIAAGPAVIAAMVVGLVIALIQALTQVQEATLTFVPKIVAVLI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
T+ ++APF+G QIS F LV SRIQS
Sbjct: 61 TVGVTAPFVGSQISIFTNLVFSRIQSGF 88
>gi|54124951|gb|AAV30219.1| AscS [Aeromonas hydrophila]
Length = 105
Score = 68.3 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 35/85 (41%), Positives = 53/85 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ AD+L +W +L S P + A +G L++ LQALTQIQE TL FV K++AV I
Sbjct: 18 MSHADILHFTSQTLWLVLILSMPPVLVAALVGTLVSLLQALTQIQEQTLGFVAKLVAVVI 77
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
TL + ++G ++ SF +VL ++
Sbjct: 78 TLFATTAWLGNELYSFADMVLLKVP 102
>gi|169827137|ref|YP_001697295.1| flagellar biosynthetic protein [Lysinibacillus sphaericus C3-41]
gi|168991625|gb|ACA39165.1| Flagellar biosynthetic protein [Lysinibacillus sphaericus C3-41]
Length = 89
Score = 68.3 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 50/88 (56%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ +A A+ IL +S P+L A+ G+ ++ QA T IQE TL FVPKI+AV +
Sbjct: 1 MTGELVISVAERAIMIILLTSGPLLLVALITGLAVSIFQATTSIQEQTLAFVPKIVAVLV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
++ P++ Q++S+ + + +
Sbjct: 61 AIVFFGPWMLSQVTSYARDIFENLTRYI 88
>gi|323705430|ref|ZP_08117005.1| flagellar biosynthetic protein FliQ [Thermoanaerobacterium
xylanolyticum LX-11]
gi|323535332|gb|EGB25108.1| flagellar biosynthetic protein FliQ [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 89
Score = 68.3 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 57/88 (64%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ VL+I R A+ + SAP+L ++ +G++I+ QA TQIQE TLTFVPKI+A+F
Sbjct: 1 MDPGLVLDIGREALMVTMMVSAPLLIISLLVGLIISIFQATTQIQEQTLTFVPKILAIFA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
++I+ P++ + ++ ++ I S +
Sbjct: 61 SIILFGPWMLTVLINYTQKLILNINSFI 88
>gi|190890388|ref|YP_001976930.1| flagellar biosynthesis transmembrane protein [Rhizobium etli CIAT
652]
gi|190695667|gb|ACE89752.1| flagellar biosynthesis transmembrane protein [Rhizobium etli CIAT
652]
gi|327193066|gb|EGE59978.1| flagellar biosynthesis transmembrane protein [Rhizobium etli
CNPAF512]
Length = 88
Score = 68.3 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 52/88 (59%), Positives = 70/88 (79%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEAD L++ +AA+WT+L ++ P + +AM +G++IA +QALTQ+QE TLTFVPKI+AV I
Sbjct: 1 MNEADALDLFQAAIWTVLIAAGPAVIAAMVVGLVIALIQALTQVQEATLTFVPKILAVLI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
T+ ++APFIG QIS F LV SRIQS
Sbjct: 61 TVGVTAPFIGSQISIFTNLVFSRIQSGF 88
>gi|220929451|ref|YP_002506360.1| flagellar biosynthetic protein FliQ [Clostridium cellulolyticum
H10]
gi|219999779|gb|ACL76380.1| flagellar biosynthetic protein FliQ [Clostridium cellulolyticum
H10]
Length = 89
Score = 68.0 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 54/88 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E+ ++ IA+ A+ IL SAP+L +M +G++I+ QA TQIQE TLTFVPKI++V
Sbjct: 1 MDESGIINIAQDALKVILYVSAPILLISMIVGLVISIFQATTQIQEQTLTFVPKILSVVA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+ + ++ + + +L I +
Sbjct: 61 AIAVFGSWMLRVLIEYTQNILININQFI 88
>gi|209547952|ref|YP_002279869.1| flagellar biosynthesis protein FliQ [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209533708|gb|ACI53643.1| flagellar biosynthetic protein FliQ [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 88
Score = 68.0 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 50/88 (56%), Positives = 70/88 (79%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEAD L++ +AA+WT+L ++ P + +AM +G++IA +QALTQ+QE TLTFVPKI+AV I
Sbjct: 1 MNEADALDLFQAAIWTVLIAAGPAVIAAMVVGLIIALIQALTQVQEATLTFVPKIVAVLI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
T+ ++APF+G Q+S F LV SRIQS
Sbjct: 61 TVGVTAPFVGSQVSIFTNLVFSRIQSGF 88
>gi|229827383|ref|ZP_04453452.1| hypothetical protein GCWU000182_02771 [Abiotrophia defectiva ATCC
49176]
gi|229788321|gb|EEP24435.1| hypothetical protein GCWU000182_02771 [Abiotrophia defectiva ATCC
49176]
Length = 102
Score = 68.0 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 56/88 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ V++I+R + IL SAP+L +++ +G++I+ +Q +T IQE TLTFVPK+I +
Sbjct: 1 MSVDRVIDISRETVMLILKLSAPMLLASLVVGLIISLIQTITSIQEQTLTFVPKLIVTML 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L+++ ++ +S F T + S + +
Sbjct: 61 MLVLTGGWMMTSLSEFATELFSNFGNYI 88
>gi|329888175|ref|ZP_08266773.1| flagellar biosynthetic protein FliQ [Brevundimonas diminuta ATCC
11568]
gi|328846731|gb|EGF96293.1| flagellar biosynthetic protein FliQ [Brevundimonas diminuta ATCC
11568]
Length = 87
Score = 68.0 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 34/86 (39%), Positives = 54/86 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ A+VL++ R A+W + P L A+ +G+ I QALTQIQE TL + PKIIA+F+
Sbjct: 1 MSGAEVLDVGRDALWLTIQLCLPALIVALVVGVAIGLFQALTQIQEQTLVYAPKIIAIFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
+L++ P +G + F+ + +RI
Sbjct: 61 SLLLFLPLMGALLGGFMREIAARIAG 86
>gi|115377825|ref|ZP_01465013.1| flagellar biosynthetic protein FliQ [Stigmatella aurantiaca
DW4/3-1]
gi|310820308|ref|YP_003952666.1| bacterial export protein fliq, family 3 [Stigmatella aurantiaca
DW4/3-1]
gi|115365157|gb|EAU64204.1| flagellar biosynthetic protein FliQ [Stigmatella aurantiaca
DW4/3-1]
gi|309393380|gb|ADO70839.1| Bacterial export protein FliQ, family 3 [Stigmatella aurantiaca
DW4/3-1]
Length = 88
Score = 68.0 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 33/80 (41%), Positives = 50/80 (62%)
Query: 9 IARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPF 68
I + A++ +L SAP + ++ +G +IA QA TQIQE TLTF PK++ VFI L ++ P+
Sbjct: 7 ITQQALFLVLIVSAPPVLISLVVGFIIALFQATTQIQEQTLTFAPKVVIVFIVLAMAGPW 66
Query: 69 IGGQISSFVTLVLSRIQSSL 88
IG Q+ F V R + +
Sbjct: 67 IGHQLLRFTFHVFDRFPALI 86
>gi|85859181|ref|YP_461383.1| flagellar biosynthetic protein [Syntrophus aciditrophicus SB]
gi|85722272|gb|ABC77215.1| flagellar biosynthetic protein [Syntrophus aciditrophicus SB]
Length = 89
Score = 68.0 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 51/88 (57%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ I A+ L + P+L + +G+ I+ QA+TQ+QE+TL FVPKI+AV +
Sbjct: 1 MTPDFVVGIMAEAIKVTLLVAGPLLIVGLVVGVAISLFQAVTQVQEMTLVFVPKIVAVLV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L+ + P++ + +F + S I + +
Sbjct: 61 ALVATLPWMINLLLTFTHNLYSNIPNYV 88
>gi|312126836|ref|YP_003991710.1| flagellar biosynthetic protein fliq [Caldicellulosiruptor
hydrothermalis 108]
gi|311776855|gb|ADQ06341.1| flagellar biosynthetic protein FliQ [Caldicellulosiruptor
hydrothermalis 108]
Length = 89
Score = 68.0 bits (165), Expect = 5e-10, Method: Composition-based stats.
Identities = 34/88 (38%), Positives = 55/88 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ VLEIAR A+ T + P+L +M +GI+++ LQA TQI E TLTFVPK+IA+ +
Sbjct: 1 MDTTLVLEIARQAILTAFYVAGPILLVSMVVGIVVSILQATTQINEQTLTFVPKLIAIAL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+L+I ++ ++ F + + I +
Sbjct: 61 SLLIFGQWMLTKVVEFTRYLWTNINQFV 88
>gi|322421720|ref|YP_004200943.1| flagellar biosynthetic protein FliQ [Geobacter sp. M18]
gi|320128107|gb|ADW15667.1| flagellar biosynthetic protein FliQ [Geobacter sp. M18]
Length = 89
Score = 68.0 bits (165), Expect = 5e-10, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 50/86 (58%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+++ R + ++ SAP+L A+ +G+LI+ QA+T I E TL F PKIIAV +
Sbjct: 1 MTPEMVVQLGRRSFEAVILLSAPLLICALVVGLLISIFQAVTSINEATLAFAPKIIAVMV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
+++ P++ +S F + I +
Sbjct: 61 AMVVFFPWMMMYMSDFTREIYGMIAN 86
>gi|39995532|ref|NP_951483.1| flagellar biosynthetic protein FliQ [Geobacter sulfurreducens
PCA]
gi|39982295|gb|AAR33756.1| flagellar biosynthetic protein FliQ [Geobacter sulfurreducens
PCA]
gi|298504533|gb|ADI83256.1| flagellar biogenesis protein FliQ [Geobacter sulfurreducens
KN400]
Length = 89
Score = 68.0 bits (165), Expect = 5e-10, Method: Composition-based stats.
Identities = 32/86 (37%), Positives = 52/86 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ V+++AR + L +AP+L S + +G+ ++ QA+T IQE TL F PKIIAV +
Sbjct: 1 MSPDLVVQLARRSFEVTLMLAAPLLISGLVVGLAVSIFQAVTSIQEATLAFAPKIIAVMV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
L+I P++ +S F V + I +
Sbjct: 61 ALVIFFPWMMNYMSDFTREVYALIAT 86
>gi|323490155|ref|ZP_08095375.1| flagellar biosynthetic protein FliQ [Planococcus donghaensis
MPA1U2]
gi|323396203|gb|EGA89029.1| flagellar biosynthetic protein FliQ [Planococcus donghaensis
MPA1U2]
Length = 89
Score = 68.0 bits (165), Expect = 5e-10, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 56/86 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+++A +++T++ SAP+L A+ +G+L++ QA+TQIQE TL F+PKI+AVFI
Sbjct: 1 MTPDMVIKLAEQSIFTVILISAPMLLIALAVGLLVSVFQAMTQIQEQTLAFIPKILAVFI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
L++ P++ + + + ++
Sbjct: 61 ALVVFGPWMLTLLLDYTRDLFEQLPR 86
>gi|308273530|emb|CBX30132.1| Flagellar biosynthetic protein fliQ [uncultured Desulfobacterium
sp.]
Length = 89
Score = 67.6 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 58/88 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ V+ +A+ A+ T + S PVL A+ +G++I+ QA+TQI E+TLTFVPKI+A+F+
Sbjct: 1 MSPEFVINLAQEAIKTTILVSMPVLLIALVVGLVISIFQAVTQINEMTLTFVPKILAIFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
LI+ ++ I++F + +I + +
Sbjct: 61 GLILFGSWMLEHIATFTINTIQQIPNYI 88
>gi|312792664|ref|YP_004025587.1| flagellar biosynthetic protein fliq [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312876514|ref|ZP_07736497.1| flagellar biosynthetic protein FliQ [Caldicellulosiruptor
lactoaceticus 6A]
gi|311796725|gb|EFR13071.1| flagellar biosynthetic protein FliQ [Caldicellulosiruptor
lactoaceticus 6A]
gi|312179804|gb|ADQ39974.1| flagellar biosynthetic protein FliQ [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 89
Score = 67.6 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 36/88 (40%), Positives = 56/88 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ A VLEIAR A+ T + P+L +M +GI+I+ LQA TQI E TLTFVPK+IA+ +
Sbjct: 1 MDTALVLEIARQAILTAFYVAGPILLVSMVVGIVISILQATTQINEQTLTFVPKLIAIAL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+L+I ++ ++ F + + I +
Sbjct: 61 SLLIFGQWMLTKVIEFTRYLWTNINQFV 88
>gi|125973003|ref|YP_001036913.1| flagellar biosynthetic protein FliQ [Clostridium thermocellum
ATCC 27405]
gi|256004800|ref|ZP_05429775.1| flagellar biosynthetic protein FliQ [Clostridium thermocellum DSM
2360]
gi|281417214|ref|ZP_06248234.1| flagellar biosynthetic protein FliQ [Clostridium thermocellum
JW20]
gi|125713228|gb|ABN51720.1| flagellar biosynthetic protein FliQ [Clostridium thermocellum
ATCC 27405]
gi|255991250|gb|EEU01357.1| flagellar biosynthetic protein FliQ [Clostridium thermocellum DSM
2360]
gi|281408616|gb|EFB38874.1| flagellar biosynthetic protein FliQ [Clostridium thermocellum
JW20]
gi|316940761|gb|ADU74795.1| flagellar biosynthetic protein FliQ [Clostridium thermocellum DSM
1313]
Length = 89
Score = 67.6 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 53/88 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + V+E+A+ A+ T+L +AP+L ++ +G+ ++ QA TQIQE TLTF+PKI++V
Sbjct: 1 MEQGLVMELAQKAIMTVLYVAAPMLGLSLLVGLAVSIFQATTQIQEQTLTFIPKILSVLG 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+ I P++ + F + I +
Sbjct: 61 AIAIFGPWMLRVLIEFTQAIYMNINHYI 88
>gi|197120184|ref|YP_002140611.1| flagellar biogenesis protein FliQ [Geobacter bemidjiensis Bem]
gi|253702493|ref|YP_003023682.1| flagellar biosynthetic protein FliQ [Geobacter sp. M21]
gi|197089544|gb|ACH40815.1| flagellar biogenesis protein FliQ [Geobacter bemidjiensis Bem]
gi|251777343|gb|ACT19924.1| flagellar biosynthetic protein FliQ [Geobacter sp. M21]
Length = 89
Score = 67.6 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 50/86 (58%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+++ R + ++ SAP+L A+ +G+LI+ QA+T I E TL F PKI+AV +
Sbjct: 1 MTPEMVVQLGRRSFEAVILLSAPLLICALVVGLLISIFQAVTSINEATLAFAPKIVAVMV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
+++ P++ +S F + I +
Sbjct: 61 AMVVFFPWMMMYMSDFTREIYGMIAN 86
>gi|320354333|ref|YP_004195672.1| flagellar biosynthetic protein FliQ [Desulfobulbus propionicus
DSM 2032]
gi|320122835|gb|ADW18381.1| flagellar biosynthetic protein FliQ [Desulfobulbus propionicus
DSM 2032]
Length = 89
Score = 67.6 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 40/86 (46%), Positives = 62/86 (72%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ V+ I R A+ TIL +SAP+L +AM +G++I+ QA TQI E T+TF+PKI+AVFI
Sbjct: 1 MSPEAVIHIGRKAVETILLTSAPMLIAAMVIGLIISIFQAATQINEQTMTFIPKIVAVFI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
TL+I P+I + +F T ++++I +
Sbjct: 61 TLLIFGPWIMELLITFTTGIINQIAT 86
>gi|254500261|ref|ZP_05112412.1| flagellar biosynthetic protein FliQ [Labrenzia alexandrii DFL-11]
gi|222436332|gb|EEE43011.1| flagellar biosynthetic protein FliQ [Labrenzia alexandrii DFL-11]
Length = 88
Score = 67.6 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 47/88 (53%), Positives = 67/88 (76%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNE D L++ R A+WTIL SAP + AM +GI IA LQALTQ+QE+TLTF+PKI+A+ +
Sbjct: 1 MNEVDALDLVRTAIWTILIGSAPAIIPAMIVGIGIALLQALTQVQEITLTFIPKIVAILV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
++I+ PFIGGQ+ + T++ SRI++
Sbjct: 61 MIVIAGPFIGGQMYALTTVIYSRIENGF 88
>gi|114777579|ref|ZP_01452560.1| flagellar biosynthetic protein FliQ [Mariprofundus ferrooxydans
PV-1]
gi|114552050|gb|EAU54567.1| flagellar biosynthetic protein FliQ [Mariprofundus ferrooxydans
PV-1]
Length = 89
Score = 67.6 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 39/86 (45%), Positives = 58/86 (67%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V++I A+ +L S P+L A+ +GI I+ QA+TQIQE+TLTFVPKIIAVF+
Sbjct: 1 MTPDSVIQIGSEALKVVLMISLPMLGVALVVGIAISLFQAVTQIQEMTLTFVPKIIAVFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
+I++AP++ Q+ SF + S I +
Sbjct: 61 AMILAAPWMSDQMISFTRELFSMIPT 86
>gi|255523690|ref|ZP_05390656.1| flagellar biosynthetic protein FliQ [Clostridium carboxidivorans
P7]
gi|296186694|ref|ZP_06855096.1| flagellar biosynthetic protein FliQ [Clostridium carboxidivorans
P7]
gi|255512559|gb|EET88833.1| flagellar biosynthetic protein FliQ [Clostridium carboxidivorans
P7]
gi|296048731|gb|EFG88163.1| flagellar biosynthetic protein FliQ [Clostridium carboxidivorans
P7]
Length = 89
Score = 67.6 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 32/86 (37%), Positives = 55/86 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E V+ I + A+ T L SAP+L ++ +G++I+ QA TQIQE TLTFVPK+IA+ +
Sbjct: 1 MSENMVIGIIKDAIQTGLIVSAPILIISILVGLIISIFQATTQIQEQTLTFVPKLIAIAV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
+++ ++ Q+ +F + + I
Sbjct: 61 VGLLTGSWMLHQLVNFTERIFTYIAH 86
>gi|83747644|ref|ZP_00944680.1| FliQ [Ralstonia solanacearum UW551]
gi|207728357|ref|YP_002256751.1| flagellar biosynthetic protein fliq [Ralstonia solanacearum
MolK2]
gi|207739725|ref|YP_002258118.1| flagellar biosynthetic protein fliq [Ralstonia solanacearum
IPO1609]
gi|300696944|ref|YP_003747605.1| FliQ: flagellar biosynthesis protein. fliQ/mopD/spaQ family
[Ralstonia solanacearum CFBP2957]
gi|83725696|gb|EAP72838.1| FliQ [Ralstonia solanacearum UW551]
gi|206591603|emb|CAQ57215.1| flagellar biosynthetic protein fliq [Ralstonia solanacearum
MolK2]
gi|206593107|emb|CAQ60013.1| flagellar biosynthetic protein fliq [Ralstonia solanacearum
IPO1609]
gi|299073668|emb|CBJ53188.1| FliQ: flagellar biosynthesis protein. fliQ/mopD/spaQ family
[Ralstonia solanacearum CFBP2957]
Length = 89
Score = 67.6 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 55/88 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M VL +AR AM + AP+L ++ +G+L+A QA TQ+ E TL+F+PK++AV
Sbjct: 1 MTPEYVLNMARQAMQVAMMIGAPMLLVSLVVGLLVAVFQAATQLNEQTLSFIPKLLAVAA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
T++++ P++ G I + VL+ I + +
Sbjct: 61 TMVLAGPWVLGVIVDYTRDVLTNIPNYV 88
>gi|299068761|emb|CBJ40001.1| FliQ: flagellar biosynthesis protein. fliQ/mopD/spaQ family
[Ralstonia solanacearum CMR15]
Length = 89
Score = 67.6 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 55/88 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M VL +AR AM + AP+L ++ +G+L+A QA TQ+ E TL+F+PK++AV
Sbjct: 1 MTPEYVLNMARQAMQVAMMVGAPMLLVSLVVGLLVAVFQAATQLNEQTLSFIPKLLAVAA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
T+I++ P++ G I + VL+ I + +
Sbjct: 61 TMILAGPWVLGVIVDYTRDVLTNIPNYV 88
>gi|117928066|ref|YP_872617.1| flagellar biosynthetic protein FliQ [Acidothermus cellulolyticus
11B]
gi|117648529|gb|ABK52631.1| flagellar biosynthetic protein FliQ [Acidothermus cellulolyticus
11B]
Length = 91
Score = 67.6 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 49/88 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + V+ +A AM AP+L +++ +G I+ QA TQIQE TL+FVPKI+AV I
Sbjct: 1 MTDTAVIHLAMQAMVVAAKLCAPILLTSLLVGFGISLFQAATQIQEFTLSFVPKILAVGI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+++S ++ + F + + +
Sbjct: 61 AIVVSGHWMLITLVDFTHQLFRSLPGLI 88
>gi|118589960|ref|ZP_01547364.1| flagellar biosynthesis protein Q [Stappia aggregata IAM 12614]
gi|118437457|gb|EAV44094.1| flagellar biosynthesis protein Q [Stappia aggregata IAM 12614]
Length = 88
Score = 67.6 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 48/88 (54%), Positives = 68/88 (77%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNE D L++ R A+WTIL SAP + AM +GI+IA LQALTQ+QE+TLTF+PKI+A+ +
Sbjct: 1 MNEVDALDLVRTAIWTILVGSAPAIVPAMIVGIVIALLQALTQVQEITLTFIPKIVAILV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
++++ PFIGGQI S TL+ +RI++
Sbjct: 61 MIVVAGPFIGGQIYSLTTLIYNRIETGF 88
>gi|167645347|ref|YP_001683010.1| flagellar biosynthesis protein FliQ [Caulobacter sp. K31]
gi|167347777|gb|ABZ70512.1| flagellar biosynthetic protein FliQ [Caulobacter sp. K31]
Length = 87
Score = 67.6 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 34/86 (39%), Positives = 53/86 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M A+VL++ R A+W L AP+L + +G+ I QALTQIQE TL + PKI+A+F+
Sbjct: 1 MTGAEVLDVGRDAIWLTLQLCAPILLVGLVVGVAIGLFQALTQIQEATLVYAPKIVAIFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
L++ P +G +S F+ + +I
Sbjct: 61 ALLLFLPLMGALMSGFMKEIAGKIAG 86
>gi|297584052|ref|YP_003699832.1| flagellar biosynthetic protein FliQ [Bacillus selenitireducens
MLS10]
gi|297142509|gb|ADH99266.1| flagellar biosynthetic protein FliQ [Bacillus selenitireducens
MLS10]
Length = 89
Score = 67.2 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 49/82 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ V+ A ++T L + P+L +A+ +G+ ++ QA TQIQE TL F+PKI V I
Sbjct: 1 MSPEMVIGWAEQGVFTTLLIAGPLLITALAIGLAVSVFQATTQIQEQTLAFIPKIAGVLI 60
Query: 61 TLIISAPFIGGQISSFVTLVLS 82
L+I P++ +++F + S
Sbjct: 61 ALVIFGPWMLQLLTTFAYDIFS 82
>gi|146282915|ref|YP_001173068.1| flagellar biosynthesis protein FliQ [Pseudomonas stutzeri A1501]
gi|145571120|gb|ABP80226.1| flagellar biosynthetic protein FliQ [Pseudomonas stutzeri A1501]
gi|327481255|gb|AEA84565.1| flagellar biosynthesis protein FliQ [Pseudomonas stutzeri DSM
4166]
Length = 89
Score = 67.2 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 47/85 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +++ R +W ++ ++ +G+++A QA TQI E TL+F+P+++ + +
Sbjct: 1 MTPEVAVDLFREGLWMTAMIVGVLVVPSLLVGLVVAMFQAATQINEQTLSFLPRLLVMLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
TLI + P++ ++ + ++ I
Sbjct: 61 TLIWAGPWLVRELMEYTQNLVHNIP 85
>gi|88813212|ref|ZP_01128452.1| flagellar biosynthetic protein FliQ [Nitrococcus mobilis Nb-231]
gi|88789534|gb|EAR20661.1| flagellar biosynthetic protein FliQ [Nitrococcus mobilis Nb-231]
Length = 89
Score = 67.2 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 50/88 (56%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ +E+ + A+ + +AP+L SA+ G++I QA TQI E T++FVPK+ + +
Sbjct: 1 MSPDLAIELGKQALTVAVLIAAPILLSALAAGLIIGMFQAATQINEQTMSFVPKLAVLVL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
TL ++AP++ + F + I +
Sbjct: 61 TLFVAAPWMLQVLLDFTQKLFRGIPGFI 88
>gi|158422277|ref|YP_001523569.1| flagellar biosynthesis protein FliQ [Azorhizobium caulinodans ORS
571]
gi|158329166|dbj|BAF86651.1| flagellar biosynthesis protein [Azorhizobium caulinodans ORS 571]
Length = 88
Score = 67.2 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 46/88 (52%), Positives = 61/88 (69%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEAD L++ R A+WTIL ++ P + +AM +GI IA +QALTQIQE TLTFVPKIIAV +
Sbjct: 1 MNEADALDVVRNAIWTILLAAGPAVAAAMLVGIFIALIQALTQIQEATLTFVPKIIAVLV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
++ F+G QI +F + RI S
Sbjct: 61 VCALTGSFMGSQIMAFTEEIYGRIASGF 88
>gi|240145487|ref|ZP_04744088.1| flagellar biosynthetic protein FliQ [Roseburia intestinalis
L1-82]
gi|257202302|gb|EEV00587.1| flagellar biosynthetic protein FliQ [Roseburia intestinalis
L1-82]
gi|291536020|emb|CBL09132.1| flagellar biosynthetic protein FliQ [Roseburia intestinalis
M50/1]
gi|291538512|emb|CBL11623.1| flagellar biosynthetic protein FliQ [Roseburia intestinalis
XB6B4]
Length = 89
Score = 67.2 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 38/88 (43%), Positives = 59/88 (67%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M E VL++A+ A++TI+ SAP+L ++ +G++++ Q +T IQE TLTFVPKIIAVF+
Sbjct: 1 MTEGQVLDVAKEAIYTIIICSAPMLIISLVVGLIVSIFQTVTSIQEQTLTFVPKIIAVFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L+I +I ++ FVT + S L
Sbjct: 61 GLMIFGSWILTNLTEFVTTLWSNFSMYL 88
>gi|119899017|ref|YP_934230.1| flagellar biosynthesis protein FliQ [Azoarcus sp. BH72]
gi|119671430|emb|CAL95343.1| flagellar biosynthesis protein FliQ [Azoarcus sp. BH72]
Length = 89
Score = 67.2 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 56/88 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+E+ R A+ L SAP+ +A+ G++I+ QA TQI E+TL+FVPKI+ +F+
Sbjct: 1 MTPTAVIELGRQAIEVTLLVSAPLFLAALVTGLIISIFQAATQINEMTLSFVPKIVVMFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
TL+++ P++ ++ F+ + I + +
Sbjct: 61 TLVLAGPWMITMLTDFMRRLFESIPTMI 88
>gi|307131600|ref|YP_003883616.1| flagellar biosynthesis protein fliQ [Dickeya dadantii 3937]
gi|306529129|gb|ADM99059.1| Flagellar biosynthesis protein fliQ [Dickeya dadantii 3937]
Length = 89
Score = 67.2 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 53/88 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + AM L + P L +A+ G++I+ LQA TQI E+TL+F+PK++ VF
Sbjct: 1 MTPESVMALGYEAMKIALMLAGPPLVAALVSGLIISLLQAATQINEMTLSFIPKVLTVFF 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
TL+++ P++ I ++ + S+ + +
Sbjct: 61 TLVVAGPWMLSVILDYMRTMFSQFPNMI 88
>gi|289208348|ref|YP_003460414.1| flagellar biosynthetic protein FliQ [Thioalkalivibrio sp. K90mix]
gi|288943979|gb|ADC71678.1| flagellar biosynthetic protein FliQ [Thioalkalivibrio sp. K90mix]
Length = 89
Score = 67.2 bits (163), Expect = 8e-10, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 51/88 (57%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+++ R + ++ +AP L +A+ +G+ I LQA TQIQE+TL+F+PK++A+F
Sbjct: 1 MTPEMVVDVGRETLTVVVLLAAPPLLTALAVGLAIGMLQAATQIQEMTLSFIPKLLAMFA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L+IS ++ I + + +
Sbjct: 61 ALLISGHWMLALIIEYTERLYDAAPGMV 88
>gi|75675328|ref|YP_317749.1| flagellar biosynthesis protein FliQ [Nitrobacter winogradskyi
Nb-255]
gi|74420198|gb|ABA04397.1| Flagellar biosynthesis protein FliQ [Nitrobacter winogradskyi
Nb-255]
Length = 87
Score = 67.2 bits (163), Expect = 8e-10, Method: Composition-based stats.
Identities = 38/87 (43%), Positives = 60/87 (68%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M A+ L++AR A+WTI+ S P+L + +G+ I+ +QALTQIQE TL FVPKI+A+F+
Sbjct: 1 MTGAETLDVARDAIWTIVLVSGPLLGVGLIVGVAISLVQALTQIQEQTLVFVPKILAIFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
TL+++ PF+ + + + + SRI
Sbjct: 61 TLVLALPFMADALHAEMLRISSRIIGG 87
>gi|329901240|ref|ZP_08272765.1| Flagellar biosynthesis protein fliQ [Oxalobacteraceae bacterium
IMCC9480]
gi|327549172|gb|EGF33764.1| Flagellar biosynthesis protein fliQ [Oxalobacteraceae bacterium
IMCC9480]
Length = 89
Score = 67.2 bits (163), Expect = 8e-10, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 55/88 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + R AM L +AP+L A+ +G++++ QA TQI E TL+F+PK++ +F+
Sbjct: 1 MTPESVMVMGRHAMEVTLMVAAPLLMVALLIGLIVSIFQAATQINEQTLSFIPKLVGIFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
TL+I+ P++ + ++ + S I S +
Sbjct: 61 TLVIAGPWMLSIMLDYMREMFSGIPSMI 88
>gi|251789177|ref|YP_003003898.1| flagellar biosynthesis protein FliQ [Dickeya zeae Ech1591]
gi|247537798|gb|ACT06419.1| flagellar biosynthetic protein FliQ [Dickeya zeae Ech1591]
Length = 89
Score = 66.8 bits (162), Expect = 8e-10, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 53/88 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + AM L + P L +A+ G++I+ LQA TQI E+TL+F+PK++ VF
Sbjct: 1 MTPESVMALGYEAMKIALMLAGPPLIAALVSGLIISLLQAATQINEMTLSFIPKVLTVFF 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
TL+++ P++ I ++ + S+ + +
Sbjct: 61 TLVVAGPWMLSVILDYMRTMFSQFPNMI 88
>gi|220915855|ref|YP_002491159.1| type III secretion protein, HrpO family [Anaeromyxobacter
dehalogenans 2CP-1]
gi|219953709|gb|ACL64093.1| type III secretion protein, HrpO family [Anaeromyxobacter
dehalogenans 2CP-1]
Length = 88
Score = 66.8 bits (162), Expect = 8e-10, Method: Composition-based stats.
Identities = 33/86 (38%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ A +L + R A+ +L SAP L +A+ +G++ LQA TQ+QE TL VP+++AV I
Sbjct: 1 MDPA-LLHLGREALLLVLVLSAPPLGAALLVGLVTGVLQAATQVQEQTLGVVPRLVAVVI 59
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
+L I+AP+IG + F + +
Sbjct: 60 SLAIAAPWIGARAVRFAADCFALVPR 85
>gi|312621585|ref|YP_004023198.1| flagellar biosynthetic protein fliq [Caldicellulosiruptor
kronotskyensis 2002]
gi|312202052|gb|ADQ45379.1| flagellar biosynthetic protein FliQ [Caldicellulosiruptor
kronotskyensis 2002]
Length = 89
Score = 66.8 bits (162), Expect = 8e-10, Method: Composition-based stats.
Identities = 34/88 (38%), Positives = 55/88 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ VLEIAR A+ T + P+L +M +GI+++ LQA TQI E TLTFVPK+IA+ +
Sbjct: 1 MDTTVVLEIARQAILTAFYVAGPILLISMVVGIVVSILQATTQINEQTLTFVPKLIAIAL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+L+I ++ ++ F + + I +
Sbjct: 61 SLLIFGQWMLTKVIEFTRYLWTNINQFV 88
>gi|284989539|ref|YP_003408093.1| export protein FliQ family 3 [Geodermatophilus obscurus DSM
43160]
gi|284062784|gb|ADB73722.1| export protein FliQ family 3 [Geodermatophilus obscurus DSM
43160]
Length = 91
Score = 66.8 bits (162), Expect = 8e-10, Method: Composition-based stats.
Identities = 37/88 (42%), Positives = 56/88 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M++ADV EIA A M +APVL +A+ +G LI+ QA TQIQE TL+FVPK+IAV I
Sbjct: 1 MSDADVTEIAVATMLVAAKVAAPVLLTALLVGFLISLFQAATQIQEPTLSFVPKVIAVAI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L+++ ++ ++ +F + + L
Sbjct: 61 ALLVTGNWVLSELVTFTQGLFDSLPRLL 88
>gi|312115274|ref|YP_004012870.1| flagellar biosynthetic protein FliQ [Rhodomicrobium vannielii
ATCC 17100]
gi|311220403|gb|ADP71771.1| flagellar biosynthetic protein FliQ [Rhodomicrobium vannielii
ATCC 17100]
Length = 88
Score = 66.8 bits (162), Expect = 9e-10, Method: Composition-based stats.
Identities = 37/88 (42%), Positives = 60/88 (68%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN+AD +++ ++A+W ++ +S P++ +AM +GI I+ QALTQIQE TLTF+PKI+ VF+
Sbjct: 1 MNQADAMDLVKSAIWVVILASGPMIGAAMAVGIAISLFQALTQIQEATLTFIPKIVTVFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+++A FIG + SRI+
Sbjct: 61 VAMLTASFIGSVLLGISEQAYSRIEHGF 88
>gi|302872554|ref|YP_003841190.1| flagellar biosynthetic protein FliQ [Caldicellulosiruptor
obsidiansis OB47]
gi|302575413|gb|ADL43204.1| flagellar biosynthetic protein FliQ [Caldicellulosiruptor
obsidiansis OB47]
Length = 89
Score = 66.8 bits (162), Expect = 9e-10, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 55/88 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ + VLEIAR A+ T + P+L +M +GI+++ LQA TQI E TLTFVPK+IA+ +
Sbjct: 1 MDTSVVLEIARQAILTAFYVAGPILLVSMVVGIVVSILQATTQINEQTLTFVPKLIAIAL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+L++ ++ ++ F + I +
Sbjct: 61 SLLVFGQWMLTKVVEFTKYLWININQFV 88
>gi|27904582|ref|NP_777708.1| flagellar biosynthetic protein FliQ [Buchnera aphidicola str. Bp
(Baizongia pistaciae)]
gi|38372221|sp|Q89AZ1|FLIQ_BUCBP RecName: Full=Flagellar biosynthetic protein FliQ
gi|27903979|gb|AAO26813.1| flagellar biosynthetic protein FliQ [Buchnera aphidicola str. Bp
(Baizongia pistaciae)]
Length = 90
Score = 66.8 bits (162), Expect = 9e-10, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 48/84 (57%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + AM L S P+L SA+ G++++ QA TQI E TL+F+PKI AV +
Sbjct: 1 MTIESVMSLFYDAMKVTLMISLPLLLSALCCGLIVSIFQAATQINEQTLSFIPKIAAVLV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
+++I P++ +S + + +
Sbjct: 61 SIVIFGPWMLVILSDYTHTLFYNL 84
>gi|222530122|ref|YP_002574004.1| flagellar biosynthetic protein FliQ [Caldicellulosiruptor bescii
DSM 6725]
gi|222456969|gb|ACM61231.1| flagellar biosynthetic protein FliQ [Caldicellulosiruptor bescii
DSM 6725]
Length = 89
Score = 66.8 bits (162), Expect = 9e-10, Method: Composition-based stats.
Identities = 35/88 (39%), Positives = 55/88 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ VLEIAR A+ T + P+L +M +GI+I+ LQA TQI E TLTFVPK+IA+ +
Sbjct: 1 MDTTVVLEIARQAILTAFYVAGPILLISMVVGIVISILQATTQINEQTLTFVPKLIAIAL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+L+I ++ ++ F + + I +
Sbjct: 61 SLLIFGQWMLTKVIEFTRYLWTNINQFV 88
>gi|222147595|ref|YP_002548552.1| flagellar biosynthesis protein FliQ [Agrobacterium vitis S4]
gi|221734583|gb|ACM35546.1| flagellar biosynthetic protein [Agrobacterium vitis S4]
Length = 88
Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 53/88 (60%), Positives = 71/88 (80%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEAD L+I RAA+WT+L +S P + +AM +G+++A +QALTQIQE+TLTFVPKI+A+ +
Sbjct: 1 MNEADALDIMRAAVWTVLIASGPAVLAAMIVGVVVALIQALTQIQEMTLTFVPKIVAIMV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
T+ ISAPF+G QIS F LV SR+QS
Sbjct: 61 TIGISAPFVGSQISIFANLVFSRVQSGF 88
>gi|149377874|ref|ZP_01895603.1| flagellar biosynthetic protein FliQ [Marinobacter algicola DG893]
gi|149357816|gb|EDM46309.1| flagellar biosynthetic protein FliQ [Marinobacter algicola DG893]
Length = 89
Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 52/85 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V++I R A+W I+ ++ ++ + +G++++ QA TQI E TL+F+P+++ I
Sbjct: 1 MTPETVIDILREALWMIVLLASLIIGPGLVIGLVVSTFQAATQINEQTLSFLPRLLVTLI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
T+I++ P++ Q+ +++ I
Sbjct: 61 TIIVAGPWMLTQLLDHANRLITSIP 85
>gi|253996310|ref|YP_003048374.1| flagellar biosynthetic protein FliQ [Methylotenera mobilis JLW8]
gi|253982989|gb|ACT47847.1| flagellar biosynthetic protein FliQ [Methylotenera mobilis JLW8]
Length = 89
Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 55/86 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + R AM L +AP+L + + +G+L++ QA TQI E TL+F+PK++ VF+
Sbjct: 1 MTPESVMTLGRDAMSITLMIAAPILLTVLAIGLLVSIFQAATQINEQTLSFIPKLVGVFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
L+++ P++ G + ++ LV + I +
Sbjct: 61 ALMLAGPWMLGTMVDYMHLVFTSIPA 86
>gi|92116948|ref|YP_576677.1| flagellar biosynthesis protein FliQ [Nitrobacter hamburgensis
X14]
gi|91799842|gb|ABE62217.1| flagellar biosynthetic protein FliQ [Nitrobacter hamburgensis
X14]
Length = 87
Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 38/87 (43%), Positives = 61/87 (70%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M A+ L++AR A+WTI+ S P+L + +G++I+ +QALTQIQE TL FVPKI+A+F+
Sbjct: 1 MTGAETLDVARDAIWTIVLVSGPLLGVGLIVGVVISLVQALTQIQEQTLVFVPKILAIFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
TL+++ PF+ + + + + SRI
Sbjct: 61 TLVLALPFMADALHAEMMRISSRIIGG 87
>gi|77918769|ref|YP_356584.1| flagellar biosynthetic protein FliQ [Pelobacter carbinolicus DSM
2380]
gi|77544852|gb|ABA88414.1| flagellar biosynthetic protein FliQ [Pelobacter carbinolicus DSM
2380]
Length = 89
Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 55/86 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + + R A+ T+L +AP+L + + +G++++ QA TQI E T+TF+PKI+AVF+
Sbjct: 1 MTPEFAIALGRQAIETVLMLAAPLLLAGLAVGLMVSIFQAATQINEQTMTFIPKIVAVFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
TL+I AP++ + +F + I +
Sbjct: 61 TLLICAPWMIRTLLTFTKNIFGNIPN 86
>gi|114332026|ref|YP_748248.1| flagellar biosynthetic protein FliQ [Nitrosomonas eutropha C91]
gi|114309040|gb|ABI60283.1| flagellar biosynthetic protein FliQ [Nitrosomonas eutropha C91]
Length = 91
Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 53/85 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ + I R A+ + +AP+L +A+ G+ I+ QA TQI E+TL+F+PK++A+F+
Sbjct: 1 MSPEQAMTIGRQALEITFTIAAPLLLAALVTGLAISIFQAATQINEMTLSFIPKLLAIFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
TL ++ P++ I ++ + + I
Sbjct: 61 TLALAGPWMLQIILDYIERLYTSIP 85
>gi|146307833|ref|YP_001188298.1| flagellar biosynthesis protein FliQ [Pseudomonas mendocina ymp]
gi|145576034|gb|ABP85566.1| flagellar biosynthetic protein FliQ [Pseudomonas mendocina ymp]
Length = 89
Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 49/85 (57%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +++ R A+W I+ + ++ +G+++A QA TQI E TL+F+P+++ + I
Sbjct: 1 MTPEVAVDLFREALWLIVLIVGLAVVPSLLVGLVVAMFQAATQINEQTLSFLPRLMVMLI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
TLI + P++ Q+ + ++ I
Sbjct: 61 TLIWAGPWLVSQLMEYTQNLIQNIP 85
>gi|302389677|ref|YP_003825498.1| flagellar biosynthetic protein FliQ [Thermosediminibacter oceani
DSM 16646]
gi|302200305|gb|ADL07875.1| flagellar biosynthetic protein FliQ [Thermosediminibacter oceani
DSM 16646]
Length = 89
Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 54/88 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + V+ +AR A+ ++ SAP+L M +G+LI+ QA TQIQE +LTFVPKI+ V +
Sbjct: 1 MTQETVIYLAREALSMVILVSAPMLGIGMLVGLLISIFQATTQIQEQSLTFVPKIVVVMM 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
++I P++ + +F + + + +
Sbjct: 61 AILIFGPWMLNLMVNFTETLFREMPNFI 88
>gi|309779458|ref|ZP_07674219.1| flagellar biosynthetic protein FliQ [Ralstonia sp. 5_7_47FAA]
gi|308921699|gb|EFP67335.1| flagellar biosynthetic protein FliQ [Ralstonia sp. 5_7_47FAA]
Length = 89
Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 55/88 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M VL++AR AM + AP+L ++ +G+L+A QA TQ+ E TL+F+PK++AV
Sbjct: 1 MTPEYVLDMARQAMQVAMMVGAPMLLVSLVVGLLVAVFQAATQLNEQTLSFIPKLLAVAA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
T++++ P+I I + VL+ I + +
Sbjct: 61 TMVLAGPWIVAVIVDYTRGVLTNIPNYV 88
>gi|121997285|ref|YP_001002072.1| flagellar biosynthetic protein FliQ [Halorhodospira halophila
SL1]
gi|121588690|gb|ABM61270.1| flagellar biosynthetic protein FliQ [Halorhodospira halophila
SL1]
Length = 89
Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 47/88 (53%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +++ A+ + P+L +A+ +G+++ QA TQI E TL+FVPK++ + +
Sbjct: 1 MTPERAIQLGTDALTVATLLAGPILLAALIIGLIVGMFQAATQINEQTLSFVPKLVGLAV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L + P++ ++ F ++ I L
Sbjct: 61 VLFLLTPWMTQVLTDFTEGLIRSIPEIL 88
>gi|315122290|ref|YP_004062779.1| flagellar biosynthesis protein FliQ [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495692|gb|ADR52291.1| flagellar biosynthesis protein FliQ [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 88
Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 79/88 (89%), Positives = 85/88 (96%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEADVLEIARAA+WTILS+SAPVL +AMF G+L+AFLQALTQIQEVTLTFVPKIIAVFI
Sbjct: 1 MNEADVLEIARAAIWTILSASAPVLLAAMFFGVLVAFLQALTQIQEVTLTFVPKIIAVFI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
TLIISAPFIGGQIS+FVTLVLSRIQSS
Sbjct: 61 TLIISAPFIGGQISAFVTLVLSRIQSSF 88
>gi|197121154|ref|YP_002133105.1| type III secretion protein, HrpO family [Anaeromyxobacter sp. K]
gi|196171003|gb|ACG71976.1| type III secretion protein, HrpO family [Anaeromyxobacter sp. K]
Length = 88
Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 33/86 (38%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ A +L + R A+ +L SAP L +A+ +G++ LQA TQ+QE TL VP+++AV I
Sbjct: 1 MDPA-LLHLGREALLLVLVLSAPPLGAALLVGLVTGVLQAATQVQEQTLGVVPRLVAVVI 59
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
L I+AP+IG + F + +
Sbjct: 60 VLAITAPWIGARAVRFAADCFALVPR 85
>gi|118581841|ref|YP_903091.1| flagellar biosynthetic protein FliQ [Pelobacter propionicus DSM
2379]
gi|118504551|gb|ABL01034.1| flagellar biosynthetic protein FliQ [Pelobacter propionicus DSM
2379]
Length = 89
Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 49/84 (58%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+++AR + L SAP+L ++ +G+LI+ QA+T I E TL F PKI+AV +
Sbjct: 1 MTPELVIQLARRSFEATLLLSAPLLIFSLAVGLLISIFQAVTSINEATLAFAPKIVAVMV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
++I P++ + F + S I
Sbjct: 61 AMVIFFPWMMTYMCDFTREIYSFI 84
>gi|134300234|ref|YP_001113730.1| flagellar biosynthetic protein FliQ [Desulfotomaculum reducens
MI-1]
gi|134052934|gb|ABO50905.1| flagellar biosynthetic protein FliQ [Desulfotomaculum reducens
MI-1]
Length = 89
Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 36/88 (40%), Positives = 56/88 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + VL +AR A+ ++ S P L AM +G++I QA TQIQE TL+FVPK++AVF+
Sbjct: 1 MTQTYVLHLAREALMMVVILSIPTLGVAMLVGLIIGIFQATTQIQEQTLSFVPKMVAVFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
TLI++A ++ F T + +I + +
Sbjct: 61 TLIVAAGWLLNIAIRFTTRLYEQIPNLI 88
>gi|134095088|ref|YP_001100163.1| flagellar biosynthetic protein fliQ [Herminiimonas
arsenicoxydans]
gi|133738991|emb|CAL62039.1| Flagellar biosynthetic protein FliQ [Herminiimonas
arsenicoxydans]
Length = 89
Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 51/85 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + R A+ L +AP+L A+ +G++++ QA TQI E TL+F+PK++ +F+
Sbjct: 1 MTPETVMTMGRHAIEITLMVAAPMLLVALGIGLIVSIFQAATQINETTLSFIPKLVGIFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
LII+ P++ + ++ + I
Sbjct: 61 ALIIAGPWMLTVLLDYMRETFTNIP 85
>gi|10998534|gb|AAG25964.1|AF300968_6 FliQ [Sinorhizobium meliloti]
Length = 88
Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 53/88 (60%), Positives = 70/88 (79%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEAD L+I +AA+WT++ +S P + +AM +G+ IAF+QALTQ+QE+TLTFVPKI+AV I
Sbjct: 1 MNEADALDIVQAAIWTVIVASGPAVLAAMVVGVGIAFIQALTQVQEMTLTFVPKILAVMI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
T +SAPF+G QIS F +V SRIQS
Sbjct: 61 TAAVSAPFVGAQISIFTDIVFSRIQSGF 88
>gi|239909256|ref|YP_002955998.1| flagellar biosynthetic protein FliQ [Desulfovibrio magneticus
RS-1]
gi|239799123|dbj|BAH78112.1| flagellar biosynthetic protein FliQ [Desulfovibrio magneticus
RS-1]
Length = 89
Score = 66.0 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 57/88 (64%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ ++R A+ L + P+L ++ +G+ ++ LQA TQIQE+TLTFVPKI+++FI
Sbjct: 1 MTTDMVVALSRQAIELALFLALPMLGVSLVVGVFVSVLQAATQIQEMTLTFVPKILSMFI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L+++ P++ ++ +F + I + L
Sbjct: 61 ALLLAFPWMMDKMLNFTRELFMNIPTYL 88
>gi|148553143|ref|YP_001260725.1| flagellar biosynthetic protein FliQ [Sphingomonas wittichii RW1]
gi|148498333|gb|ABQ66587.1| flagellar biosynthetic protein FliQ [Sphingomonas wittichii RW1]
Length = 93
Score = 66.0 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 32/87 (36%), Positives = 49/87 (56%)
Query: 2 NEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFIT 61
+ + IA+ AMW + +SAP+L A+ GI++ +QA T I E TL+FVPK+I V I
Sbjct: 6 SPDYFIGIAQQAMWILALASAPILIPALVAGIILGMIQAATSINEQTLSFVPKLIVVGIA 65
Query: 62 LIISAPFIGGQISSFVTLVLSRIQSSL 88
L + I ++ F + +RI L
Sbjct: 66 LALFGGAILMLLADFTREIFARIPDML 92
>gi|253998479|ref|YP_003050542.1| flagellar biosynthetic protein FliQ [Methylovorus sp. SIP3-4]
gi|313200554|ref|YP_004039212.1| flagellar biosynthetic protein fliq [Methylovorus sp. MP688]
gi|253985158|gb|ACT50015.1| flagellar biosynthetic protein FliQ [Methylovorus sp. SIP3-4]
gi|312439870|gb|ADQ83976.1| flagellar biosynthetic protein FliQ [Methylovorus sp. MP688]
Length = 89
Score = 66.0 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 51/86 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + R AM L SAP+L + +G+L++ QA TQI E TL+F+PK++ VF
Sbjct: 1 MTPEGVMTLGRQAMEVTLMVSAPMLIVVLVIGLLVSIFQAATQINETTLSFIPKLVGVFA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
L+I+ P++ + ++ + + I S
Sbjct: 61 VLVIAGPWMLSVMLDYMRAIFTSIPS 86
>gi|71906401|ref|YP_283988.1| flagellar biosynthesis protein FliQ [Dechloromonas aromatica RCB]
gi|71846022|gb|AAZ45518.1| Flagellar biosynthesis protein FliQ [Dechloromonas aromatica RCB]
Length = 83
Score = 66.0 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 52/82 (63%)
Query: 7 LEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISA 66
+EI R A+ L SAP+L +A+ +G++++ QA TQ+ E TL FVPK++A+F+ L+++
Sbjct: 1 MEIGRQAIEVTLLISAPMLITALVVGLIVSIFQAATQLNESTLQFVPKLVAMFVVLLLTG 60
Query: 67 PFIGGQISSFVTLVLSRIQSSL 88
P++ + ++ + I +
Sbjct: 61 PWMIQYLVDYIQRLFGSIPQLI 82
>gi|328545485|ref|YP_004305594.1| flagellar biosynthesis transmembrane protein [polymorphum gilvum
SL003B-26A1]
gi|326415226|gb|ADZ72289.1| Flagellar biosynthesis transmembrane protein [Polymorphum gilvum
SL003B-26A1]
Length = 88
Score = 66.0 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 47/88 (53%), Positives = 66/88 (75%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEAD L++ R+A+WTI+ SAP + AM +GI IA +QALTQ+QEVTLTF+PKI+A+ +
Sbjct: 1 MNEADALDLVRSAIWTIIVGSAPAIVPAMVVGIGIALMQALTQVQEVTLTFIPKIVAILV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
++I+ PFIG QI + LV RI++
Sbjct: 61 MIVIAGPFIGAQIYALTALVYGRIETGF 88
>gi|15964438|ref|NP_384791.1| flagellar biosynthesis protein FliQ [Sinorhizobium meliloti 1021]
gi|150395509|ref|YP_001325976.1| flagellar biosynthesis protein FliQ [Sinorhizobium medicae
WSM419]
gi|307311580|ref|ZP_07591221.1| flagellar biosynthetic protein FliQ [Sinorhizobium meliloti
BL225C]
gi|307318935|ref|ZP_07598366.1| flagellar biosynthetic protein FliQ [Sinorhizobium meliloti AK83]
gi|15073615|emb|CAC45257.1| Putative flagellar biosynthetic transmembrane protein
[Sinorhizobium meliloti 1021]
gi|150027024|gb|ABR59141.1| flagellar biosynthetic protein FliQ [Sinorhizobium medicae
WSM419]
gi|306895349|gb|EFN26104.1| flagellar biosynthetic protein FliQ [Sinorhizobium meliloti AK83]
gi|306899597|gb|EFN30226.1| flagellar biosynthetic protein FliQ [Sinorhizobium meliloti
BL225C]
Length = 88
Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 54/88 (61%), Positives = 70/88 (79%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEAD L+I +AA+WT++ +S P + +AM +G+ IAF+QALTQ+QE+TLTFVPKI+AV I
Sbjct: 1 MNEADALDIVQAAIWTVIVASGPAVLAAMVVGVGIAFIQALTQVQEMTLTFVPKILAVMI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
T ISAPF+G QIS F +V SRIQS
Sbjct: 61 TAAISAPFVGAQISIFTDIVFSRIQSGF 88
>gi|303240271|ref|ZP_07326790.1| flagellar biosynthetic protein FliQ [Acetivibrio cellulolyticus
CD2]
gi|302592181|gb|EFL61910.1| flagellar biosynthetic protein FliQ [Acetivibrio cellulolyticus
CD2]
Length = 89
Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 53/88 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M++ V+E+A+ ++ T++ SAP+L ++ +G+ I+ QA TQIQE TLTF+PKI+AV
Sbjct: 1 MDQGMVIELAQKSIMTVIYVSAPMLGLSLIVGLAISIFQATTQIQEQTLTFIPKILAVLA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+ I ++ + + + I +
Sbjct: 61 GIAIFGSWMLKMLMEYTQGIYMNINQYI 88
>gi|172057872|ref|YP_001814332.1| flagellar biosynthetic protein FliQ [Exiguobacterium sibiricum
255-15]
gi|171990393|gb|ACB61315.1| flagellar biosynthetic protein FliQ [Exiguobacterium sibiricum
255-15]
Length = 90
Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 35/85 (41%), Positives = 60/85 (70%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + ++++A +A+WT+L SAP+L ++ +G+L++ LQA TQIQE TL+FVPKI+AVF+
Sbjct: 1 MTQEMIIQLASSAVWTLLKVSAPLLLVSLVVGLLVSILQATTQIQEQTLSFVPKIVAVFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
L+ P+I ++ +F + +I
Sbjct: 61 ALVFFGPWIMEELKTFTIEIFKQIA 85
>gi|167630308|ref|YP_001680807.1| flagellar biosynthetic protein fliq, putative [Heliobacterium
modesticaldum Ice1]
gi|167593048|gb|ABZ84796.1| flagellar biosynthetic protein fliq, putative [Heliobacterium
modesticaldum Ice1]
Length = 91
Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/87 (36%), Positives = 56/87 (64%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+++ R A+ +L SAP+L +++ +G++I+ QA TQIQE TLTFVPKIIAV +
Sbjct: 1 MTPELVIQLGRDALAAVLLISAPLLGASLLVGLVISVFQATTQIQEATLTFVPKIIAVLV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
+++ P++ + +V +L + +
Sbjct: 61 VILLFGPWMLEAMMKYVDQMLGSLNTY 87
>gi|315648122|ref|ZP_07901223.1| flagellar biosynthetic protein FliQ [Paenibacillus vortex V453]
gi|315276768|gb|EFU40111.1| flagellar biosynthetic protein FliQ [Paenibacillus vortex V453]
Length = 89
Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 53/84 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ ++ +A A++ +L SAP++ A+ +G++I+ QA TQIQE TL FVPKI+ V +
Sbjct: 1 MSSEFIIGLAGQAVYIVLQVSAPMMVLALVVGLIISIFQATTQIQEQTLAFVPKIVIVLV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
+L++ P+I + F +L +
Sbjct: 61 SLLLFGPWILTTLVDFTHGILDNL 84
>gi|271500075|ref|YP_003333100.1| flagellar biosynthetic protein FliQ [Dickeya dadantii Ech586]
gi|270343630|gb|ACZ76395.1| flagellar biosynthetic protein FliQ [Dickeya dadantii Ech586]
Length = 89
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 53/88 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + AM L + P L +A+ G++++ LQA TQI E+TL+F+PK++ VF
Sbjct: 1 MTPESVMALGYEAMKIALMLAGPPLIAALVSGLIVSMLQAATQINEMTLSFIPKVLTVFF 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
TL+++ P++ I ++ + S+ + +
Sbjct: 61 TLVVAGPWMLSVILDYMRAMFSQFPNMI 88
>gi|197104396|ref|YP_002129773.1| flagellar biosynthesis protein FliQ [Phenylobacterium zucineum
HLK1]
gi|196477816|gb|ACG77344.1| flagellar biosynthesis protein FliQ [Phenylobacterium zucineum
HLK1]
Length = 87
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 40/86 (46%), Positives = 59/86 (68%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN A+VL++ R A+W + SAPVL + +G+ I LQALTQIQE TL + PKI+A+FI
Sbjct: 1 MNGAEVLDVGRDAIWLTIQLSAPVLIVGLIVGVGIGLLQALTQIQEATLVYAPKIVAIFI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
+L+I P +G +S F+ + +RI +
Sbjct: 61 SLLIFLPLMGALMSGFMRHIAARIAA 86
>gi|10955565|ref|NP_052406.1| YscS [Yersinia enterocolitica]
gi|16082733|ref|NP_395179.1| needle complex export protein [Yersinia pestis CO92]
gi|28372986|ref|NP_783680.1| YscS [Yersinia enterocolitica]
gi|31795276|ref|NP_857737.1| needle complex export protein [Yersinia pestis KIM]
gi|31795478|ref|NP_857932.1| needle complex export protein [Yersinia pestis KIM]
gi|32470293|ref|NP_863528.1| YscS [Yersinia enterocolitica]
gi|45478539|ref|NP_995366.1| type III secretion protein yscS YscS [Yersinia pestis biovar
Microtus str. 91001]
gi|51593914|ref|YP_068481.1| yscS; putative type III secretion protein [Yersinia
pseudotuberculosis IP 32953]
gi|108793659|ref|YP_636809.1| type III secretion protein [Yersinia pestis Antiqua]
gi|122815817|ref|YP_001004083.1| putative type III secretion protein [Yersinia enterocolitica
subsp. enterocolitica 8081]
gi|145597137|ref|YP_001154601.1| type III secretion protein [Yersinia pestis Pestoides F]
gi|149192694|ref|YP_001293926.1| putative type III secretion protein [Yersinia pestis CA88-4125]
gi|162417747|ref|YP_001604477.1| type III secretion apparatus protein YscS [Yersinia pestis
Angola]
gi|165927783|ref|ZP_02223615.1| type III secretion apparatus protein YscS [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165940088|ref|ZP_02228622.1| type III secretion apparatus protein YscS [Yersinia pestis biovar
Orientalis str. IP275]
gi|166011708|ref|ZP_02232606.1| type III secretion apparatus protein YscS [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166214448|ref|ZP_02240483.1| type III secretion apparatus protein YscS [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167401906|ref|ZP_02307392.1| type III secretion apparatus protein YscS [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167422415|ref|ZP_02314168.1| type III secretion apparatus protein YscS [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167422450|ref|ZP_02314203.1| type III secretion apparatus protein YscS [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167422878|ref|ZP_02314631.1| type III secretion apparatus protein YscS [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167426849|ref|ZP_02318602.1| type III secretion apparatus protein YscS [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|186897579|ref|YP_001874690.1| HrpO family type III secretion protein [Yersinia
pseudotuberculosis PB1/+]
gi|229896861|ref|ZP_04512021.1| putative type III secretion protein [Yersinia pestis Pestoides A]
gi|229900216|ref|ZP_04515352.1| putative type III secretion protein [Yersinia pestis biovar
Orientalis str. India 195]
gi|270491104|ref|ZP_06208176.1| type III secretion protein, HrpO family [Yersinia pestis KIM D27]
gi|332163587|ref|YP_004424929.1| putative type III secretion protein [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|57015236|sp|P69982|YSCS_YERPE RecName: Full=Yop proteins translocation protein S
gi|57015237|sp|P69983|YSCS_YERPS RecName: Full=Yop proteins translocation protein S
gi|14579351|gb|AAK69228.1|AF336309_23 YscS [Yersinia enterocolitica]
gi|475124|gb|AAA27679.1| yscS [Yersinia pseudotuberculosis]
gi|2996236|gb|AAC62559.1| Yop proteins translocation protein S homolog [Yersinia pestis KIM
10]
gi|3822066|gb|AAC69786.1| type III secretion protein [Yersinia pestis KIM 10]
gi|4324352|gb|AAD16829.1| YscS [Yersinia enterocolitica W22703]
gi|5832465|emb|CAB54922.1| putative type III secretion protein [Yersinia pestis CO92]
gi|23630558|gb|AAN37514.1| YscS [Yersinia enterocolitica]
gi|45357161|gb|AAS58557.1| type III secretion protein yscS YscS [Yersinia pestis biovar
Microtus str. 91001]
gi|51591611|emb|CAF25415.1| yscS; putative type III secretion protein [Yersinia
pseudotuberculosis IP 32953]
gi|108782206|gb|ABG16261.1| type III secretion protein [Yersinia pestis Antiqua]
gi|121663691|emb|CAL10053.1| putative type III secretion protein [Yersinia enterocolitica
subsp. enterocolitica 8081]
gi|145212905|gb|ABP42311.1| type III secretion protein [Yersinia pestis Pestoides F]
gi|148872352|gb|ABR14842.1| putative type III secretion protein [Yersinia pestis CA88-4125]
gi|162354767|gb|ABX88714.1| type III secretion apparatus protein YscS [Yersinia pestis
Angola]
gi|165911998|gb|EDR30641.1| type III secretion apparatus protein YscS [Yersinia pestis biovar
Orientalis str. IP275]
gi|165920219|gb|EDR37520.1| type III secretion apparatus protein YscS [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165989315|gb|EDR41616.1| type III secretion apparatus protein YscS [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166204341|gb|EDR48821.1| type III secretion apparatus protein YscS [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166958168|gb|EDR55189.1| type III secretion apparatus protein YscS [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|166958652|gb|EDR55673.1| type III secretion apparatus protein YscS [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|166958687|gb|EDR55708.1| type III secretion apparatus protein YscS [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167048634|gb|EDR60042.1| type III secretion apparatus protein YscS [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167054148|gb|EDR63975.1| type III secretion apparatus protein YscS [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|186700605|gb|ACC91233.1| type III secretion protein, HrpO family [Yersinia
pseudotuberculosis PB1/+]
gi|229686736|gb|EEO78816.1| putative type III secretion protein [Yersinia pestis biovar
Orientalis str. India 195]
gi|229700132|gb|EEO88171.1| putative type III secretion protein [Yersinia pestis Pestoides A]
gi|270334847|gb|EFA45626.1| type III secretion protein, HrpO family [Yersinia pestis KIM D27]
gi|310923236|emb|CBW54702.1| YscS, T3SS component [Yersinia enterocolitica (type O:8)]
gi|317374479|gb|ADV16654.1| type III secretion inner membrane protein [Yersinia pestis]
gi|318608196|emb|CBY78170.1| type III secretion inner membrane protein (YscS,homologous to
flagellar export components) [Yersinia enterocolitica
subsp. palearctica Y11]
gi|325667817|gb|ADZ44460.1| putative type III secretion protein [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
Length = 88
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 34/86 (39%), Positives = 55/86 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M++ D++ A+W +L S P + A +G L++ +QALTQIQE TL FV K+IAV +
Sbjct: 1 MSQGDIIHFTSQALWLVLVLSMPPVLVAAVVGTLVSLVQALTQIQEQTLGFVIKLIAVVV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
TL +A ++G ++ SF + + +IQ
Sbjct: 61 TLFATASWLGNELHSFAEMTMMKIQG 86
>gi|225181594|ref|ZP_03735035.1| flagellar biosynthetic protein FliQ [Dethiobacter alkaliphilus
AHT 1]
gi|225167702|gb|EEG76512.1| flagellar biosynthetic protein FliQ [Dethiobacter alkaliphilus
AHT 1]
Length = 89
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 35/87 (40%), Positives = 55/87 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ VL +AR A+ T L +APVL ++ +G+ I+ QA TQIQE TLTFVPKIIAVF+
Sbjct: 1 MSHEFVLSVARDAILTTLFIAAPVLIISLLVGLGISVFQATTQIQEQTLTFVPKIIAVFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
L++ ++ + F + +++ +
Sbjct: 61 ALLVFGSWMLNTLVQFTANLFAQLGTF 87
>gi|254780519|ref|YP_003064932.1| flagellar biosynthesis protein FliQ [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040196|gb|ACT56992.1| flagellar biosynthesis protein FliQ [Candidatus Liberibacter
asiaticus str. psy62]
Length = 88
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 88/88 (100%), Positives = 88/88 (100%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI
Sbjct: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
TLIISAPFIGGQISSFVTLVLSRIQSSL
Sbjct: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
>gi|229918643|ref|YP_002887289.1| flagellar biosynthetic protein FliQ [Exiguobacterium sp. AT1b]
gi|229470072|gb|ACQ71844.1| flagellar biosynthetic protein FliQ [Exiguobacterium sp. AT1b]
Length = 90
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 37/82 (45%), Positives = 56/82 (68%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + V+ +A ++WT+L S P+L ++ +G++I+ LQA TQIQE TL+FVPKII+VFI
Sbjct: 1 MTQEMVIYLATESVWTLLKISMPLLLISLIVGLVISILQATTQIQEQTLSFVPKIISVFI 60
Query: 61 TLIISAPFIGGQISSFVTLVLS 82
L+I P++ QI F L+
Sbjct: 61 GLVIFGPWMLQQIEGFTRLIFE 82
>gi|92114089|ref|YP_574017.1| flagellar biosynthetic protein FliQ [Chromohalobacter salexigens
DSM 3043]
gi|91797179|gb|ABE59318.1| flagellar biosynthetic protein FliQ [Chromohalobacter salexigens
DSM 3043]
Length = 89
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 51/88 (57%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ +A M L + P+L +A+ +G+L++ QA TQI E+TLTF+PKI+ VF
Sbjct: 1 MTPEMVMGLAYQGMKVTLMLAGPLLMTALLIGLLVSLFQAATQINEMTLTFIPKILGVFG 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L+++ P++ I F + + S +
Sbjct: 61 ALVVAGPWLIQTIVDFTRELFLNLPSMV 88
>gi|261407967|ref|YP_003244208.1| flagellar biosynthetic protein FliQ [Paenibacillus sp. Y412MC10]
gi|329929295|ref|ZP_08283048.1| flagellar biosynthetic protein FliQ [Paenibacillus sp. HGF5]
gi|261284430|gb|ACX66401.1| flagellar biosynthetic protein FliQ [Paenibacillus sp. Y412MC10]
gi|328936664|gb|EGG33107.1| flagellar biosynthetic protein FliQ [Paenibacillus sp. HGF5]
Length = 89
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 52/84 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ ++ +A A++ +L SAP+L A+ +G++I+ QA TQIQE TL FVPKII V +
Sbjct: 1 MSAEFIIGLAGQAVYIVLQVSAPMLVLALVVGLIISIFQATTQIQEQTLAFVPKIIIVLV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
L++ P+I + F +L +
Sbjct: 61 ALLLFGPWILTTLVDFTHGILDNL 84
>gi|297538205|ref|YP_003673974.1| flagellar biosynthetic protein FliQ [Methylotenera sp. 301]
gi|297257552|gb|ADI29397.1| flagellar biosynthetic protein FliQ [Methylotenera sp. 301]
Length = 89
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 51/86 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + R AM L +AP+L + +G+L++ QA TQI E TL+F+PK++ VF
Sbjct: 1 MTPESVMTLGRDAMEITLLVAAPILLVVLAIGLLVSIFQAATQINEATLSFIPKLVGVFG 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
TL+ + ++ + ++ LV + I +
Sbjct: 61 TLMFAGQWMLTTLVDYMHLVFTSIPA 86
>gi|260778659|ref|ZP_05887551.1| type III secretion protein YscS [Vibrio coralliilyticus ATCC
BAA-450]
gi|260604823|gb|EEX31118.1| type III secretion protein YscS [Vibrio coralliilyticus ATCC
BAA-450]
Length = 89
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 52/84 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEA ++ +W +L S PV+ A +GIL++ QALTQIQ+ +L F+ K++AV I
Sbjct: 1 MNEAVIIHFTSELLWLVLILSLPVVVVASAVGILVSLFQALTQIQDQSLQFLIKLVAVCI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
TL +S ++G + ++ L +I
Sbjct: 61 TLAVSYHWMGSTLLNYAGLAFDQI 84
>gi|218706361|ref|YP_002413880.1| surface presentation of antigens protein [Escherichia coli UMN026]
gi|218433458|emb|CAR14360.1| surface presentation of antigens protein [Escherichia coli UMN026]
Length = 115
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 45/81 (55%)
Query: 2 NEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFIT 61
N D++ A++ IL SA + A F+G+L+ Q +TQ+QE TL F K++ V I
Sbjct: 29 NMDDIVFAGNRALYLILVMSAGPIAVATFVGLLVGLFQTVTQLQEQTLPFGVKLLCVSIC 88
Query: 62 LIISAPFIGGQISSFVTLVLS 82
+ + + G ++ SF +L+
Sbjct: 89 FFLMSGWYGEKLYSFGIEMLN 109
>gi|331005443|ref|ZP_08328822.1| Flagellar biosynthesis protein fliQ [gamma proteobacterium
IMCC1989]
gi|330420719|gb|EGG95006.1| Flagellar biosynthesis protein fliQ [gamma proteobacterium
IMCC1989]
Length = 88
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 53/88 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +E++ +WT + APVL +M +G++++ +Q +TQIQE++LTF+PK++A I
Sbjct: 1 MTPDFAIELSNELLWTAILMCAPVLGISMLVGLIVSMVQVVTQIQEMSLTFIPKMLAAAI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L++ P++ G + F ++ I
Sbjct: 61 ALVVFGPWMLGVLIEFARGLIVNIPHYF 88
>gi|91776319|ref|YP_546075.1| flagellar biosynthetic protein FliQ [Methylobacillus flagellatus
KT]
gi|91710306|gb|ABE50234.1| flagellar biosynthetic protein FliQ [Methylobacillus flagellatus
KT]
Length = 89
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 51/85 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ V+ + R A +L + P+L + +G+L++ QA TQI E TLTF+PK++ VF
Sbjct: 1 MSPEHVMTMGRQAAEILLMVAGPMLLVVLAIGLLVSIFQAATQINEATLTFIPKLLGVFA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
TL+I+ P++ + ++ V + I
Sbjct: 61 TLLIAGPWMLSVFTDYLRAVFTSIP 85
>gi|73539700|ref|YP_300067.1| flagellar biosynthesis protein FliQ [Ralstonia eutropha JMP134]
gi|72123037|gb|AAZ65223.1| Flagellar biosynthesis protein FliQ [Ralstonia eutropha JMP134]
Length = 89
Score = 65.3 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/86 (37%), Positives = 53/86 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ IA AM L +AP L A+ G++++ QA TQI E+TLTF+PK++A+F
Sbjct: 1 MTPETVMTIATHAMKMTLMLAAPPLLVALAAGLVVSLFQAATQINEMTLTFIPKLVALFA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
TL+++ P++ + ++ VL I +
Sbjct: 61 TLVLAGPWMINTMVDYMREVLQSIPA 86
>gi|253988528|ref|YP_003039884.1| type III secretion component protein scts [Photorhabdus
asymbiotica subsp. asymbiotica ATCC 43949]
gi|211637890|emb|CAR66519.1| type iii secretion component protein scts [Photorhabdus
asymbiotica subsp. asymbiotica ATCC 43949]
gi|253779978|emb|CAQ83139.1| type iii secretion component protein scts [Photorhabdus
asymbiotica]
Length = 88
Score = 65.3 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 35/85 (41%), Positives = 54/85 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ AD+L ++W +L S P + A +G L++ +QALTQIQE TL FV K+IAV I
Sbjct: 1 MSNADILHFTSQSLWLVLILSLPPVLMAAVVGTLVSLIQALTQIQEQTLGFVIKLIAVII 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
TL +A ++G ++ SF + S++
Sbjct: 61 TLFATATWLGNELYSFANMAFSKVP 85
>gi|188579931|ref|YP_001923376.1| flagellar biosynthesis protein FliQ [Methylobacterium populi
BJ001]
gi|179343429|gb|ACB78841.1| flagellar biosynthetic protein FliQ [Methylobacterium populi
BJ001]
Length = 88
Score = 65.3 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 42/88 (47%), Positives = 64/88 (72%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNE D LE+ R+A+WT+L ++ P + +AM +GI +A LQALTQ+QEVTLTFVPKI+A+ +
Sbjct: 1 MNEVDALELVRSAIWTVLVAAGPSVGAAMLVGIAVALLQALTQVQEVTLTFVPKIVAILL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
++++ F+G QI +F + RI +
Sbjct: 61 VMLVTGTFVGSQIYAFAEMTYGRIATGF 88
>gi|226941266|ref|YP_002796340.1| FliQ1 [Laribacter hongkongensis HLHK9]
gi|226716193|gb|ACO75331.1| FliQ1 [Laribacter hongkongensis HLHK9]
Length = 89
Score = 65.3 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 57/88 (64%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + + A+ ++ ++P+L ++ +G+L++ QA TQI E+TLTF+PK++A+F+
Sbjct: 1 MTPEHVINLVQNALLILILIASPLLAVSLGVGLLVSVFQAATQINEMTLTFIPKLLAMFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
T+I++ P++ ++ F + S I +
Sbjct: 61 TVILAGPWMLRTLTDFTIRLYSSIPQMI 88
>gi|219854406|ref|YP_002471528.1| hypothetical protein CKR_1063 [Clostridium kluyveri NBRC 12016]
gi|219568130|dbj|BAH06114.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 92
Score = 65.3 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 36/86 (41%), Positives = 56/86 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E V+ I + A+ T L SAP+L ++ +G++I+ QA TQIQE TLTFVPK+IAV I
Sbjct: 4 MSENMVMGIIKDAIQTGLLISAPILIISILVGLIISIFQATTQIQEQTLTFVPKLIAVAI 63
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
+++ ++ QI SF + + I +
Sbjct: 64 IGLLTGSWMLHQIVSFTERIFTYIAN 89
>gi|227820881|ref|YP_002824851.1| flagellar biosynthesis protein FliQ [Sinorhizobium fredii NGR234]
gi|227339880|gb|ACP24098.1| flagellar biosynthetic protein FliQ [Sinorhizobium fredii NGR234]
Length = 88
Score = 65.3 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 52/88 (59%), Positives = 71/88 (80%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEAD L+I +AA+WT++ +S P + +AM +G++IAF+QALTQ+QE+TLTFVPKI+AV +
Sbjct: 1 MNEADALDIVQAAIWTVIVASGPAVLAAMVVGVVIAFIQALTQVQEMTLTFVPKILAVMV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
T ISAPF+G QIS F ++ SRIQS
Sbjct: 61 TAAISAPFVGAQISIFTDIIFSRIQSGF 88
>gi|146296297|ref|YP_001180068.1| flagellar biosynthetic protein FliQ [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145409873|gb|ABP66877.1| flagellar biosynthetic protein FliQ [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 89
Score = 65.3 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 36/88 (40%), Positives = 55/88 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ A LEIAR A+ T + P+L +M +GI+I+ LQA TQI E TLTFVPK+IA+ +
Sbjct: 1 MDIAVALEIARQAILTAFYIAGPILIVSMIVGIVISILQATTQINEQTLTFVPKLIAIAV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+L+I ++ + F +L+ I +
Sbjct: 61 SLLIFGHWMLTKAVEFTKYLLTNINQFV 88
>gi|302878288|ref|YP_003846852.1| flagellar biosynthetic protein FliQ [Gallionella
capsiferriformans ES-2]
gi|302581077|gb|ADL55088.1| flagellar biosynthetic protein FliQ [Gallionella
capsiferriformans ES-2]
Length = 89
Score = 65.3 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 52/85 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + + A+ L SAP+L SA+ +G++++ QA TQI E TL+F+PK++ +F+
Sbjct: 1 MTPESVMTLGQQAIELTLLLSAPLLLSALAIGLVVSIFQAATQINEQTLSFIPKLVGIFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
L+I+ P++ + F+ + I
Sbjct: 61 VLVIAGPWMVTMMVDFIRRLYGNIP 85
>gi|331269329|ref|YP_004395821.1| flagellar biosynthesis protein FliQ [Clostridium botulinum
BKT015925]
gi|329125879|gb|AEB75824.1| flagellar biosynthesis protein FliQ [Clostridium botulinum
BKT015925]
Length = 89
Score = 65.3 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 34/86 (39%), Positives = 56/86 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E V+ I + AM+T + +SAP+L ++ +G++I+ QA TQIQE TLTFVPK+I V +
Sbjct: 1 MSEEMVIGILKDAMYTGIMASAPILIVSIVIGLVISIFQATTQIQEQTLTFVPKLIGVAV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
+I+A F+ + F + + I +
Sbjct: 61 VGLITAKFMNHTVVGFTERIFAMIAN 86
>gi|330502777|ref|YP_004379646.1| flagellar biosynthesis protein FliQ [Pseudomonas mendocina NK-01]
gi|328917063|gb|AEB57894.1| flagellar biosynthesis protein FliQ [Pseudomonas mendocina NK-01]
Length = 89
Score = 65.3 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 49/85 (57%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +++ R A+W I+ + ++ +G+++A QA TQI E TL+F+P+++ + I
Sbjct: 1 MTPEVAVDLFREALWLIVLIVGLAVVPSLVVGLIVAMFQAATQINEQTLSFLPRLMVMLI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
TLI + P++ Q+ + ++ I
Sbjct: 61 TLIWAGPWLVSQLMEYTQTLIQNIP 85
>gi|95929865|ref|ZP_01312606.1| flagellar biosynthetic protein FliQ [Desulfuromonas acetoxidans
DSM 684]
gi|95134161|gb|EAT15819.1| flagellar biosynthetic protein FliQ [Desulfuromonas acetoxidans
DSM 684]
Length = 89
Score = 65.3 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 35/84 (41%), Positives = 56/84 (66%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+++ R A+ T+L S+P+L S + +G+L++ QA TQI E T+TF+PKI+AV +
Sbjct: 1 MTPEFVIDLGRNAVKTVLLISSPMLLSGLIIGLLVSIFQAATQINEQTMTFIPKIVAVLV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
+LI+ AP+I + SF V + I
Sbjct: 61 SLILFAPWIIRLMLSFTENVFNGI 84
>gi|226313053|ref|YP_002772947.1| flagellar biosynthetic protein FliQ [Brevibacillus brevis NBRC
100599]
gi|226096001|dbj|BAH44443.1| flagellar biosynthetic protein FliQ [Brevibacillus brevis NBRC
100599]
Length = 89
Score = 65.3 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 57/88 (64%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + +++IA+++++TIL SAP L A+ +G++++ QA TQIQE TL F+PKI+AVF+
Sbjct: 1 MTQELLMQIAQSSVYTILLISAPALGVALLVGLMVSVFQATTQIQEQTLAFIPKIVAVFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
++ + P++ + F + + +
Sbjct: 61 VILAAGPWMLRVLLDFTMGIFGNLHRFV 88
>gi|300024582|ref|YP_003757193.1| flagellar biosynthetic protein FliQ [Hyphomicrobium denitrificans
ATCC 51888]
gi|299526403|gb|ADJ24872.1| flagellar biosynthetic protein FliQ [Hyphomicrobium denitrificans
ATCC 51888]
Length = 89
Score = 65.3 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 37/88 (42%), Positives = 56/88 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M E D L I + A+W + + PV+ SAM +G+ +AF QALTQ+QE+TLTFVPKIIA F+
Sbjct: 1 MTEGDALGIVQQAIWLTIILAGPVIASAMIIGVSVAFFQALTQVQEMTLTFVPKIIAGFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
++++ + G + F + RI +
Sbjct: 61 IILMTGSYSGSLLKVFTEQLYLRIATGF 88
>gi|255021383|ref|ZP_05293431.1| Flagellar biosynthesis protein fliQ [Acidithiobacillus caldus
ATCC 51756]
gi|254969246|gb|EET26760.1| Flagellar biosynthesis protein fliQ [Acidithiobacillus caldus
ATCC 51756]
Length = 90
Score = 65.3 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 34/88 (38%), Positives = 55/88 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ + I++ A+WT L SAP+L A+ +G+L++ QA TQI E+TL+FVPK++A+ +
Sbjct: 1 MSPESIASISQHALWTALLLSAPLLGVALVVGVLVSVFQAATQINEMTLSFVPKVLAMAL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
LII P++ G I F + I +
Sbjct: 61 VLIIGGPWMLGLIMHFTIQLFHNIPHLI 88
>gi|163744321|ref|ZP_02151681.1| flagellar biosynthesis protein Q [Oceanibulbus indolifex HEL-45]
gi|161381139|gb|EDQ05548.1| flagellar biosynthesis protein Q [Oceanibulbus indolifex HEL-45]
Length = 89
Score = 65.3 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 37/87 (42%), Positives = 57/87 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M E +I +W +L +S PVL A+ +G++IAF QALTQIQE+TLTFVPKI+ +F+
Sbjct: 1 MTETQTYDIISDTVWAVLLASGPVLGVALGIGLVIAFFQALTQIQEMTLTFVPKIVMIFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
TL+++ PF+ + + V +Q+
Sbjct: 61 TLLVATPFMYATLKNLSDTVFDLVQNG 87
>gi|313497810|gb|ADR59176.1| FliQ [Pseudomonas putida BIRD-1]
Length = 89
Score = 65.3 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 51/88 (57%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +++ R A+W A ++ ++ +G+++A QA TQI E TL+F+P+++ + I
Sbjct: 1 MTPEVAVDLFRDALWLTTLMVAVLVVPSLLVGLVVAMFQAATQINEQTLSFLPRLLVMLI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
TLII+ P++ + + T + + I +
Sbjct: 61 TLIIAGPWLVQKFMEYFTTLYTNIPQLI 88
>gi|114706622|ref|ZP_01439523.1| flagellar biosynthesis protein Q [Fulvimarina pelagi HTCC2506]
gi|114538014|gb|EAU41137.1| flagellar biosynthesis protein Q [Fulvimarina pelagi HTCC2506]
Length = 92
Score = 64.9 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 43/88 (48%), Positives = 65/88 (73%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN+AD ++I + A+WTI+++ AP + +AM +GI+IA QALTQIQE+TLTFVPKI+A+F+
Sbjct: 1 MNQADAIDIVQEAIWTIITACAPAVAAAMIVGIVIALFQALTQIQEMTLTFVPKILAIFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+ I+A F G Q+ +F RI++
Sbjct: 61 VIAITASFTGAQVYAFTQEAYGRIETGF 88
>gi|5921673|gb|AAD56297.1| FliQ [Pseudomonas putida]
Length = 89
Score = 64.9 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 52/88 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +++ R+A+W A ++ ++ +G+L+A QA TQI E TL+F+P+++ + I
Sbjct: 1 MTPEVAVDLFRSALWLTTLMVAVLVVPSLLVGLLVAIFQAATQINEQTLSFLPRLLVMLI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
TLI+ P++ + ++T + S I +
Sbjct: 61 TLIVGGPWLVQKFMEYMTGLYSSIPHLI 88
>gi|300854221|ref|YP_003779205.1| flagellar biosynthesis protein FliQ [Clostridium ljungdahlii DSM
13528]
gi|300434336|gb|ADK14103.1| flagellar biosynthesis protein FliQ [Clostridium ljungdahlii DSM
13528]
Length = 89
Score = 64.9 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 33/86 (38%), Positives = 54/86 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E V+ I + A+ T L AP+L ++ +G++I+ QA TQIQE TLTFVPK+IAV +
Sbjct: 1 MSENMVIGIIKDAVQTGLIVGAPILIVSVVVGLIISIFQATTQIQEQTLTFVPKLIAVAV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
+I+ ++ Q+ +F + + I
Sbjct: 61 IGLITGSWMLQQVVAFTERIFTYIAH 86
>gi|153953790|ref|YP_001394555.1| hypothetical protein CKL_1165 [Clostridium kluyveri DSM 555]
gi|146346671|gb|EDK33207.1| FliQ [Clostridium kluyveri DSM 555]
Length = 89
Score = 64.9 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 36/86 (41%), Positives = 56/86 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E V+ I + A+ T L SAP+L ++ +G++I+ QA TQIQE TLTFVPK+IAV I
Sbjct: 1 MSENMVMGIIKDAIQTGLLISAPILIISILVGLIISIFQATTQIQEQTLTFVPKLIAVAI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
+++ ++ QI SF + + I +
Sbjct: 61 IGLLTGSWMLHQIVSFTERIFTYIAN 86
>gi|126665004|ref|ZP_01735987.1| flagellar biosynthesis protein Q [Marinobacter sp. ELB17]
gi|126630374|gb|EBA00989.1| flagellar biosynthesis protein Q [Marinobacter sp. ELB17]
Length = 89
Score = 64.9 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 49/85 (57%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V++I R A+W I+ ++ ++ + +G++++ QA TQI E TL+F+P+++ I
Sbjct: 1 MTPETVIDILREALWMIVLLASVIITPGLIIGLVVSTFQAATQINEQTLSFLPRLLITLI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
+I+ P++ ++ + S I
Sbjct: 61 VIIVWGPWMLTKLLDHANALFSSIP 85
>gi|323700134|ref|ZP_08112046.1| flagellar biosynthetic protein FliQ [Desulfovibrio sp. ND132]
gi|323460066|gb|EGB15931.1| flagellar biosynthetic protein FliQ [Desulfovibrio desulfuricans
ND132]
Length = 89
Score = 64.9 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 34/88 (38%), Positives = 56/88 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ AR A+ L S P+L M +GI I+ +QA TQIQE+TLT VPKIIA+F+
Sbjct: 1 MTPEFVVGFARQAIEMTLIISLPMLGIGMIVGIFISIIQAATQIQEMTLTMVPKIIAIFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L+++ P+I +++++ T + + + +
Sbjct: 61 ALLLAFPWIMDKMTAYTTNLFLNLPNYI 88
>gi|327441039|dbj|BAK17404.1| flagellar biosynthesis pathway, component FliQ [Solibacillus
silvestris StLB046]
Length = 89
Score = 64.9 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 54/88 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + V+ IA A++TIL S P+L A+ G++++ QA T IQE TL FVPKI+AV +
Sbjct: 1 MTQEMVIAIAENAVFTILIVSGPLLLIALISGLIVSIFQATTSIQEQTLAFVPKIVAVLV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+I PF+ +++ + +L+ + +
Sbjct: 61 AIIFFGPFMISKMTDYFHDILNNLVRYI 88
>gi|30248476|ref|NP_840546.1| family 3 exporter FliQ [Nitrosomonas europaea ATCC 19718]
gi|30138362|emb|CAD84371.1| Bacterial export proteins, family 3 (FliQ) [Nitrosomonas europaea
ATCC 19718]
Length = 91
Score = 64.9 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 55/85 (64%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN + I R A+ + +AP+L +A+ G++I+ QA TQI E+TL+F+PK++A+FI
Sbjct: 1 MNPEQAMTIGRQALEVTFTIAAPLLLAALVTGLVISIFQAATQINEMTLSFIPKLLAIFI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
TL ++ P+I + ++T + + I
Sbjct: 61 TLTLAGPWILQIMLDYITRLYTSIP 85
>gi|332981450|ref|YP_004462891.1| flagellar biosynthetic protein FliQ [Mahella australiensis 50-1
BON]
gi|332699128|gb|AEE96069.1| flagellar biosynthetic protein FliQ [Mahella australiensis 50-1
BON]
Length = 89
Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 54/88 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M++A VL I R A++ ++ SAP+ + +GI+++ QA+TQI E TL F+PKIIA+ +
Sbjct: 1 MSQAQVLSIVRNALYMVILLSAPMAIFGLVVGIIVSIFQAVTQINEQTLVFIPKIIAIIV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
LI+ P+I + F + I S +
Sbjct: 61 ALILFGPWILNTMVDFTNDIFHSILSFI 88
>gi|221069287|ref|ZP_03545392.1| flagellar biosynthetic protein FliQ [Comamonas testosteroni KF-1]
gi|264676605|ref|YP_003276511.1| flagellar biosynthetic protein FliQ [Comamonas testosteroni
CNB-2]
gi|299531250|ref|ZP_07044660.1| flagellar biosynthetic protein FliQ [Comamonas testosteroni S44]
gi|220714310|gb|EED69678.1| flagellar biosynthetic protein FliQ [Comamonas testosteroni KF-1]
gi|262207117|gb|ACY31215.1| flagellar biosynthetic protein FliQ [Comamonas testosteroni
CNB-2]
gi|298720657|gb|EFI61604.1| flagellar biosynthetic protein FliQ [Comamonas testosteroni S44]
Length = 89
Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 48/88 (54%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M VL R A+ +L S PVL M +G+L++ QA+TQ+ E TL FVPK+IA +
Sbjct: 1 MTSQFVLTFGREALTLLLMISMPVLGVVMGVGLLVSVFQAVTQVHEATLAFVPKLIAAVL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
++ P++ + F+ + I S+
Sbjct: 61 VFAVAGPWMLSTLVDFIRRTIESIPGSV 88
>gi|291519581|emb|CBK74802.1| flagellar biosynthetic protein FliQ [Butyrivibrio fibrisolvens
16/4]
Length = 89
Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 55/88 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M E VL+I R A++T+L +S P+L ++ +G+ I+ Q +T IQE TLTF+PKI+ VF
Sbjct: 1 MTEGQVLDIIRDAVYTLLITSLPLLLVSLIVGLAISIFQTVTSIQEQTLTFIPKIVGVFA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L+ P++ ++ ++T + + L
Sbjct: 61 ALLFFGPWMLTVLTEYITELWANFSIYL 88
>gi|304311111|ref|YP_003810709.1| Flagellar biosynthesis protein FliQ [gamma proteobacterium HdN1]
gi|301796844|emb|CBL45056.1| Flagellar biosynthesis protein FliQ [gamma proteobacterium HdN1]
Length = 89
Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 51/88 (57%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ ++ ++ R A++ I+ +L ++ +G++++ QA TQI E TL+F P+++ F
Sbjct: 1 MSPDNIADLMREAVFLIVLMVTVILVPSLIVGLIVSIFQAATQINEQTLSFFPRLVVTFG 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
TLII ++ ++ F ++ I S +
Sbjct: 61 TLIIFGGWLASELIDFTLKIIHEIPSLI 88
>gi|220913716|ref|YP_002489025.1| flagellar biosynthetic protein FliQ [Arthrobacter
chlorophenolicus A6]
gi|219860594|gb|ACL40936.1| flagellar biosynthetic protein FliQ [Arthrobacter
chlorophenolicus A6]
Length = 91
Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 35/88 (39%), Positives = 56/88 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ VL+I AM +APVL +A+ +G+ I+ LQ++TQ+QE TL+FVPK +AV I
Sbjct: 1 MDTNAVLDICLQAMIVAAKLAAPVLVTALVVGLAISLLQSITQLQEATLSFVPKAVAVAI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L++ A ++ ++ SF + +RI L
Sbjct: 61 ALVVCAHWMITEMVSFTNELFTRIPGLL 88
>gi|253682353|ref|ZP_04863150.1| flagellar biosynthetic protein FliQ [Clostridium botulinum D str.
1873]
gi|253562065|gb|EES91517.1| flagellar biosynthetic protein FliQ [Clostridium botulinum D str.
1873]
Length = 89
Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 34/86 (39%), Positives = 56/86 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E V+ I + AM+T + +SAP+L ++ +G++I+ QA TQIQE TLTFVPK+I V +
Sbjct: 1 MSEDMVIGILKDAMYTGIMASAPILIVSIVIGLVISIFQATTQIQEQTLTFVPKLIGVAV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
+I+A F+ + F + + I +
Sbjct: 61 IGLITAKFMNHTVVGFTERIFAMIAN 86
>gi|37527634|ref|NP_930978.1| Type III secretion component protein SctS [Photorhabdus
luminescens subsp. laumondii TTO1]
gi|36787069|emb|CAE16144.1| Type III secretion component protein SctS [Photorhabdus
luminescens subsp. laumondii TTO1]
Length = 88
Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 34/85 (40%), Positives = 53/85 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ AD+L ++W +L S P + A +G L++ +QALTQIQE TL FV K+IAV I
Sbjct: 1 MSNADILHFTSQSLWLVLILSLPPVLMAAAVGTLVSLIQALTQIQEQTLGFVIKLIAVII 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
TL +A ++G ++ SF + ++
Sbjct: 61 TLFATATWLGNELYSFANMTFLKVP 85
>gi|2465660|gb|AAB72202.1| YscS [Yersinia pestis]
Length = 79
Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 33/78 (42%), Positives = 51/78 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M++ D++ A+W +L S P + A +G L++ +QALTQIQE TL FV K+IAV +
Sbjct: 1 MSQGDIIHFTSQALWLVLVLSMPPVLVAAVVGTLVSLVQALTQIQEQTLGFVIKLIAVVV 60
Query: 61 TLIISAPFIGGQISSFVT 78
TL +A ++G ++ SFV
Sbjct: 61 TLFATASWLGNELHSFVQ 78
>gi|229544409|ref|ZP_04433467.1| flagellar biosynthetic protein FliQ [Bacillus coagulans 36D1]
gi|229324894|gb|EEN90571.1| flagellar biosynthetic protein FliQ [Bacillus coagulans 36D1]
Length = 89
Score = 64.5 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 51/88 (57%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E V+ +A + P+L A+ +G++++ QA TQIQE TL FVPKI+AV +
Sbjct: 1 MSEEMVISLAEKGIMVTFMVCGPLLLIALVVGMIVSIFQAATQIQEQTLAFVPKIVAVLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L++ P++ + ++ +LS + +
Sbjct: 61 GLVLLGPWMLSHMLTYTKEILSNLTQYI 88
>gi|284006887|emb|CBA72156.1| type III secretion component protein SctS [Arsenophonus nasoniae]
Length = 87
Score = 64.5 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 52/84 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN D + ++ ++W + S P + A +G L++ +QALTQIQE TL F+ K+ +V +
Sbjct: 1 MNSLDFIYLSEQSLWLVFMLSMPPIVVAAIVGTLVSLIQALTQIQEQTLGFLFKLTSVIV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
TL++ A ++G +I F L+ RI
Sbjct: 61 TLLMIADWLGNEIYRFTELIFQRI 84
>gi|317151988|ref|YP_004120036.1| flagellar biosynthetic protein FliQ [Desulfovibrio aespoeensis
Aspo-2]
gi|316942239|gb|ADU61290.1| flagellar biosynthetic protein FliQ [Desulfovibrio aespoeensis
Aspo-2]
Length = 89
Score = 64.5 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 35/88 (39%), Positives = 55/88 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ AR A+ L S P+L M +GI I+ LQA TQIQE+TLT VPKI+A+FI
Sbjct: 1 MTPEFVVGFARQAIEITLVISLPMLGVGMIVGIFISVLQAATQIQEMTLTMVPKIVAIFI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L+++ P+I ++ ++ T + + + +
Sbjct: 61 ALLVAFPWIMDKMMTYTTNLFLNLPNYI 88
>gi|46398251|gb|AAS91805.1| AscS [Aeromonas hydrophila]
Length = 88
Score = 64.5 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 36/85 (42%), Positives = 53/85 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ AD+L +W +L S P + A +G L++ LQALTQIQE TL FV K+IAV I
Sbjct: 1 MSHADILHFTSQTLWLVLILSMPPVLVAALVGTLVSLLQALTQIQEQTLGFVAKLIAVVI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
TL + ++G ++ SF +VL ++
Sbjct: 61 TLFATTAWLGNELYSFADMVLYKVP 85
>gi|323136995|ref|ZP_08072075.1| export protein FliQ family 3 [Methylocystis sp. ATCC 49242]
gi|322397756|gb|EFY00278.1| export protein FliQ family 3 [Methylocystis sp. ATCC 49242]
Length = 88
Score = 64.5 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 45/88 (51%), Positives = 63/88 (71%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEAD LEI + TIL S P++ +AM +G+++A +QALTQ+QE+TLTFVPKI+A+
Sbjct: 1 MNEADALEIVHRTIVTILLVSGPLVGAAMVVGVIVALVQALTQVQEMTLTFVPKIVAMLA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L +SAPFIG +I + V SRI++
Sbjct: 61 VLSLSAPFIGSKIYALAQFVYSRIETGF 88
>gi|226327731|ref|ZP_03803249.1| hypothetical protein PROPEN_01604 [Proteus penneri ATCC 35198]
gi|225203435|gb|EEG85789.1| hypothetical protein PROPEN_01604 [Proteus penneri ATCC 35198]
Length = 89
Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 54/88 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M VL + AM LS + P+L SA+ G++I+ LQA TQI E+TL+F+PKI+AV +
Sbjct: 1 MTPESVLALGTEAMKIALSLAGPLLLSALVTGLVISMLQAATQINEMTLSFIPKILAVLV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
++++ P++ + ++ + + I +
Sbjct: 61 AILVAGPWMLSLLVDYMHNLFTGIPGMI 88
>gi|145301464|ref|YP_001144303.1| AscS protein [Aeromonas salmonicida subsp. salmonicida A449]
gi|38201230|emb|CAD56765.1| ascS protein [Aeromonas salmonicida subsp. salmonicida]
gi|66947957|emb|CAE83094.1| AscS protein [Aeromonas salmonicida subsp. salmonicida]
gi|142856346|gb|ABO92555.1| AscS protein [Aeromonas salmonicida subsp. salmonicida A449]
Length = 88
Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 37/85 (43%), Positives = 54/85 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ AD+L A+W +L S P + A +G L++ LQALTQIQE TL FV K+IAV I
Sbjct: 1 MSHADILHFTSQALWLVLILSMPPVLVAALVGTLVSLLQALTQIQEQTLGFVAKLIAVVI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
TL + ++G ++ SF +VL ++
Sbjct: 61 TLFATTAWLGNELYSFANMVLFKVP 85
>gi|323703182|ref|ZP_08114835.1| flagellar biosynthetic protein FliQ [Desulfotomaculum nigrificans
DSM 574]
gi|323531841|gb|EGB21727.1| flagellar biosynthetic protein FliQ [Desulfotomaculum nigrificans
DSM 574]
Length = 89
Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 37/86 (43%), Positives = 58/86 (67%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M E V+ +AR A+ ++ S P L AM +G++I+ LQA TQIQE TL+FVPK++AVF+
Sbjct: 1 MTETFVIHVAREALMMVVILSLPALGVAMLVGLIISILQATTQIQEQTLSFVPKMVAVFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
TL+I+A ++ +F T + +I +
Sbjct: 61 TLLIAASWLLNIAVNFTTRLYQQIPN 86
>gi|145284337|gb|ABP51918.1| AscS [Aeromonas veronii bv. sobria]
Length = 88
Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 37/85 (43%), Positives = 54/85 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ AD+L A+W +L S P + A +G L++ LQALTQIQE TL FV K+IAV I
Sbjct: 1 MSHADILHFTSQALWLVLILSMPPVLVAALVGTLVSLLQALTQIQEQTLGFVAKLIAVVI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
TL + ++G ++ SF +VL ++
Sbjct: 61 TLFATTAWLGNELYSFADMVLFKVP 85
>gi|117395330|gb|ABK34502.1| putative export protein [Gossypium hirsutum]
Length = 88
Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 55/88 (62%), Positives = 72/88 (81%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEADVL+I +AA+WT+L++S P + SAM +GI++A LQALTQ+QE+TLTFVPKI+AV
Sbjct: 1 MNEADVLDIVQAAIWTVLAASGPAVLSAMVVGIVVALLQALTQVQEITLTFVPKILAVLA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+ ISAPFIG QIS F T++ SR+QS
Sbjct: 61 AVAISAPFIGSQISIFTTMIFSRVQSGF 88
>gi|328911740|gb|AEB63336.1| component of the flagellar export machinery [Bacillus
amyloliquefaciens LL3]
Length = 81
Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 31/79 (39%), Positives = 47/79 (59%)
Query: 9 IARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPF 68
+A A++ L P+L A+ +G+L++ QA TQIQE TL F+PKI+AV + LI P+
Sbjct: 1 MAEKAVYVTLMICGPLLAIALIVGLLVSIFQATTQIQEQTLAFIPKIVAVMLGLIFFGPW 60
Query: 69 IGGQISSFVTLVLSRIQSS 87
+ I SF T + S +
Sbjct: 61 MLSTILSFTTDLFSHLNRF 79
>gi|197285500|ref|YP_002151372.1| flagellar biosynthetic protein [Proteus mirabilis HI4320]
gi|227355991|ref|ZP_03840383.1| flagellar biosynthetic protein [Proteus mirabilis ATCC 29906]
gi|194682987|emb|CAR43423.1| flagellar biosynthetic protein [Proteus mirabilis HI4320]
gi|227163979|gb|EEI48881.1| flagellar biosynthetic protein [Proteus mirabilis ATCC 29906]
Length = 89
Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 53/88 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M VL + AM LS + P+L SA+ G++I+ LQA TQI E+TL+F+PKI+AV
Sbjct: 1 MTPESVLALGTEAMKIALSLAGPLLLSALVTGLVISMLQAATQINEMTLSFIPKILAVLA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
++++ P++ + ++ + + I +
Sbjct: 61 AILVAGPWMLSLLLDYMHNLFTGIPGMI 88
>gi|163850129|ref|YP_001638172.1| flagellar biosynthesis protein FliQ [Methylobacterium extorquens
PA1]
gi|218528733|ref|YP_002419549.1| flagellar biosynthesis protein FliQ [Methylobacterium
chloromethanicum CM4]
gi|240137263|ref|YP_002961732.1| putative outer proteins translocation protein S [Methylobacterium
extorquens AM1]
gi|254559274|ref|YP_003066369.1| outer proteins translocation protein S [Methylobacterium
extorquens DM4]
gi|163661734|gb|ABY29101.1| flagellar biosynthetic protein FliQ [Methylobacterium extorquens
PA1]
gi|218521036|gb|ACK81621.1| flagellar biosynthetic protein FliQ [Methylobacterium
chloromethanicum CM4]
gi|240007229|gb|ACS38455.1| Putative outer proteins translocation protein S [Methylobacterium
extorquens AM1]
gi|254266552|emb|CAX22316.1| Putative outer proteins translocation protein S [Methylobacterium
extorquens DM4]
Length = 88
Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 42/88 (47%), Positives = 64/88 (72%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNE D LE+ R+A+WT++ ++ P + +AM +GI +A LQALTQIQEVTLTFVPKI+A+ +
Sbjct: 1 MNEVDALELVRSAIWTVIVAAGPSVGAAMLVGIAVALLQALTQIQEVTLTFVPKIVAILL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
++++ F+G QI +F + RI +
Sbjct: 61 VMLVTGTFVGAQIYAFAEMTYGRIATGF 88
>gi|94500291|ref|ZP_01306824.1| flagellar biosynthesis protein [Oceanobacter sp. RED65]
gi|94427590|gb|EAT12567.1| flagellar biosynthesis protein [Oceanobacter sp. RED65]
Length = 89
Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 45/85 (52%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + + R A++ ++ + +L + +G+++A QA TQI E TL+F+P+++ +
Sbjct: 1 MGVEHLGDFLREALFVVILIVSAILVPGLLVGLIVATFQAATQINEQTLSFLPRLVVTLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
++ P+I ++ + + I
Sbjct: 61 CVLFFGPWIILKLVEYTENLYKNIP 85
>gi|85058020|ref|YP_453722.1| flagellar biosynthesis protein FliQ [Sodalis glossinidius str.
'morsitans']
gi|84778540|dbj|BAE73317.1| flagellar protein FliQ [Sodalis glossinidius str. 'morsitans']
Length = 89
Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 34/88 (38%), Positives = 56/88 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + AM L+ S P L +AM G+L++ LQA TQI E+TL+F+PKI+AV I
Sbjct: 1 MTPEAVMTLGFDAMKVGLALSTPPLLAAMVTGLLVSLLQASTQINEMTLSFIPKILAVII 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+L+I+ P++ + +V + S++ S+
Sbjct: 61 SLVIAGPWMLSLLLDYVRTLFSQLPYSI 88
>gi|254470264|ref|ZP_05083668.1| flagellar biosynthetic protein FliQ [Pseudovibrio sp. JE062]
gi|211960575|gb|EEA95771.1| flagellar biosynthetic protein FliQ [Pseudovibrio sp. JE062]
Length = 88
Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 39/87 (44%), Positives = 60/87 (68%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M A+VL+IA +WT++ SAPV+ + +G+++A QALTQIQE TL FVPKI+++FI
Sbjct: 1 MTGAEVLDIASEGIWTLILVSAPVMLIGLLVGVIVALFQALTQIQEQTLVFVPKILSIFI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
L+++ PF+G ++SF + I S
Sbjct: 61 ALLVTLPFMGELMNSFTNRIAGLIISG 87
>gi|282891200|ref|ZP_06299703.1| type III secretion inner membrane protein SctS [Parachlamydia
acanthamoebae str. Hall's coccus]
gi|281498893|gb|EFB41209.1| type III secretion inner membrane protein SctS [Parachlamydia
acanthamoebae str. Hall's coccus]
Length = 92
Score = 64.1 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 33/85 (38%), Positives = 50/85 (58%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ V+++A + IL SAP + +MF GIL+A QA TQIQE TL+F K+ AV +
Sbjct: 1 MHATQVIQLAYQGLLLILILSAPPILVSMFFGILVAIFQAATQIQEQTLSFTVKLCAVTL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
TL+ ++G QI +F + +
Sbjct: 61 TLMFLGGWLGAQIMTFASNIFQHFP 85
>gi|238924153|ref|YP_002937669.1| hypothetical protein EUBREC_1791 [Eubacterium rectale ATCC 33656]
gi|238875828|gb|ACR75535.1| hypothetical protein EUBREC_1791 [Eubacterium rectale ATCC 33656]
gi|291524886|emb|CBK90473.1| flagellar biosynthetic protein FliQ [Eubacterium rectale DSM
17629]
Length = 92
Score = 64.1 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 32/87 (36%), Positives = 59/87 (67%)
Query: 2 NEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFIT 61
+ VL+IAR A++T + +SAP+L ++ +G++++ Q +T IQE TLTFVPKIIA+F+
Sbjct: 3 TQEAVLDIAREAIYTTIITSAPLLLISLIVGLIVSIFQTVTSIQEQTLTFVPKIIAIFLV 62
Query: 62 LIISAPFIGGQISSFVTLVLSRIQSSL 88
+++ ++ +S F+T + S+ +
Sbjct: 63 MMLCGSWMLDTMSGFMTDLWSKFSYYI 89
>gi|89094444|ref|ZP_01167384.1| flagellar biosynthetic protein FliQ [Oceanospirillum sp. MED92]
gi|89081336|gb|EAR60568.1| flagellar biosynthetic protein FliQ [Oceanospirillum sp. MED92]
Length = 89
Score = 64.1 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 48/85 (56%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M VL + A W I+ + ++ ++ +G++++ QA TQI E TL+F+P+++ +
Sbjct: 1 MTPEVVLSLFGEAFWLIVVLVSVIIVPSLIVGLIVSTFQAATQINEQTLSFLPRLLVTIL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
++ + P++ +++ + ++ I
Sbjct: 61 VIMWTGPWLLTKLTEHFSNLVKNIP 85
>gi|219682017|ref|YP_002468401.1| flagellar biosynthetic protein FliQ [Buchnera aphidicola str.
Tuc7 (Acyrthosiphon pisum)]
gi|219621750|gb|ACL29906.1| flagellar biosynthetic protein FliQ [Buchnera aphidicola str.
Tuc7 (Acyrthosiphon pisum)]
gi|311085825|gb|ADP65907.1| flagellar biosynthetic protein FliQ [Buchnera aphidicola str.
LL01 (Acyrthosiphon pisum)]
gi|311086398|gb|ADP66479.1| flagellar biosynthetic protein FliQ [Buchnera aphidicola str.
TLW03 (Acyrthosiphon pisum)]
Length = 89
Score = 64.1 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 51/84 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+E+ AM L ++P+L +A+ G++I+ LQA TQ+ E TL+F+PKII+V
Sbjct: 1 MTSEYVMELFYDAMKVALIIASPLLLAALISGLIISILQAATQVNEQTLSFIPKIISVLG 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
+ I P++ G + ++ + + I
Sbjct: 61 VISILGPWMLGVMLDYMHNLFNNI 84
>gi|42524693|ref|NP_970073.1| flagellar biosynthetic protein FliQ [Bdellovibrio bacteriovorus
HD100]
gi|39576903|emb|CAE78132.1| flagellar biosynthetic protein FliQ [Bdellovibrio bacteriovorus
HD100]
Length = 90
Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 50/85 (58%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + V+ + + A+ T +AP+L S + +G+ ++ QALTQI E TLTF+PK+I V
Sbjct: 1 MTDELVIRLGQDALRTTAMLAAPLLISTLVVGLAVSIFQALTQINEATLTFIPKMIVVAA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
+++ P++ +SS+ + I
Sbjct: 61 VFVLAGPWMMDVMSSYTVNLFENIA 85
>gi|168186133|ref|ZP_02620768.1| flagellar biosynthetic protein FliQ [Clostridium botulinum C str.
Eklund]
gi|169295660|gb|EDS77793.1| flagellar biosynthetic protein FliQ [Clostridium botulinum C str.
Eklund]
Length = 89
Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats.
Identities = 37/86 (43%), Positives = 56/86 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E V+ I + AM+T + +SAP+L ++ +G+LI+ QA TQIQE TLTFVPK+I V I
Sbjct: 1 MSEEMVIGILKDAMYTGIMASAPILIVSIVIGLLISIFQATTQIQEQTLTFVPKLIGVAI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
+I+A FI + F + + I +
Sbjct: 61 VGLITAKFINHTVVGFTERIFALIAN 86
>gi|313673291|ref|YP_004051402.1| flagellar biosynthetic protein fliq [Calditerrivibrio
nitroreducens DSM 19672]
gi|312940047|gb|ADR19239.1| flagellar biosynthetic protein FliQ [Calditerrivibrio
nitroreducens DSM 19672]
Length = 90
Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 54/88 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN VL + A+ L +AP+L + G++++ QA+TQIQE+TL+F+PKI+AV I
Sbjct: 1 MNPDLVLSLTTKALEVALMLAAPMLLFGLIAGLVVSIFQAVTQIQEMTLSFIPKILAVVI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L+I P++ + SF + + I S +
Sbjct: 61 ALVIFFPWMMDTMISFTINLFTNINSYI 88
>gi|258514016|ref|YP_003190238.1| flagellar biosynthetic protein FliQ [Desulfotomaculum acetoxidans
DSM 771]
gi|257777721|gb|ACV61615.1| flagellar biosynthetic protein FliQ [Desulfotomaculum acetoxidans
DSM 771]
Length = 89
Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 54/86 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + + +AR A +L + P + + + +G++++ QA+TQIQE TL+FVPK++AVF+
Sbjct: 1 MTQTFAIHMAREAFIMMLILALPPIGAGLLVGLVVSVFQAVTQIQEQTLSFVPKLLAVFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
L++ + ++ + F + + ++ +
Sbjct: 61 VLLLFSSWMLNMMIDFTSDIFKQLPN 86
>gi|296162491|ref|ZP_06845282.1| type III secretion protein, HrpO family [Burkholderia sp. Ch1-1]
gi|295887304|gb|EFG67131.1| type III secretion protein, HrpO family [Burkholderia sp. Ch1-1]
Length = 91
Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 46/80 (57%)
Query: 8 EIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAP 67
++ A+ + S P L A +G+LI LQ++TQIQ+ +L + KII V LII+AP
Sbjct: 9 NLSSDALMLVFWLSLPALAVATAVGLLIGLLQSVTQIQDQSLPYGAKIICVGGVLIITAP 68
Query: 68 FIGGQISSFVTLVLSRIQSS 87
+ ++S F+ V + I +
Sbjct: 69 WANRELSRFLAHVFTYIAAG 88
>gi|118443073|ref|YP_877990.1| flagellar biosynthetic protein FliQ [Clostridium novyi NT]
gi|118133529|gb|ABK60573.1| flagellar biosynthetic protein FliQ [Clostridium novyi NT]
Length = 89
Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats.
Identities = 37/86 (43%), Positives = 57/86 (66%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E V+ I + AM+T + +SAP+L +++ +G+LI+ QA TQIQE TLTFVPK+I V I
Sbjct: 1 MSEEMVIGILKDAMYTGIIASAPILIASIAIGLLISIFQATTQIQEQTLTFVPKLIGVAI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
+I+A FI + F + + I +
Sbjct: 61 VGLITAKFINHTVVGFTERIFAIIAN 86
>gi|167034911|ref|YP_001670142.1| flagellar biosynthesis protein FliQ [Pseudomonas putida GB-1]
gi|166861399|gb|ABY99806.1| flagellar biosynthetic protein FliQ [Pseudomonas putida GB-1]
Length = 89
Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 52/88 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +++ R A+W A ++ ++ +G+++A QA TQI E TL+F+P+++ + I
Sbjct: 1 MTPEVAVDLFRDALWLTTLMVAVLVVPSLLVGLVVAMFQAATQINEQTLSFLPRLLVMLI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
TLI++ P++ + ++T + + I +
Sbjct: 61 TLIVAGPWLVQKFMEYITTLYTNIPQLI 88
>gi|195953031|ref|YP_002121321.1| flagellar biosynthetic protein FliQ [Hydrogenobaculum sp.
Y04AAS1]
gi|195932643|gb|ACG57343.1| flagellar biosynthetic protein FliQ [Hydrogenobaculum sp.
Y04AAS1]
Length = 89
Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 51/88 (57%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M++ VL I + + SAP+L + +G+LI+ LQ+ TQIQE+TL+++PKI+A F
Sbjct: 1 MSQDQVLTITENMLKMTVLLSAPILLTTFIVGLLISILQSATQIQEMTLSYIPKILAAFF 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+ + ++ + + ++ I + +
Sbjct: 61 VIFLLGSWMMKHMVDYTKEIIINIPNYI 88
>gi|83309716|ref|YP_419980.1| flagellar biosynthesis pathway [Magnetospirillum magneticum
AMB-1]
gi|82944557|dbj|BAE49421.1| Flagellar biosynthesis pathway [Magnetospirillum magneticum
AMB-1]
Length = 89
Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats.
Identities = 34/87 (39%), Positives = 58/87 (66%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M E ++++IAR + +L +AP L + + +G++I+ Q LTQIQE TLTFVPK++ VF
Sbjct: 1 MTEPELIDIARETIMVMLKVAAPTLLTGLVVGLVISIFQTLTQIQEQTLTFVPKMLLVFA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
++I+ PF+ ++ F LV+ R+ +
Sbjct: 61 SMILFLPFMLHSLTEFWRLVMDRVVAG 87
>gi|26991043|ref|NP_746468.1| flagellar biosynthesis protein FliQ [Pseudomonas putida KT2440]
gi|24986075|gb|AAN69932.1|AE016632_3 flagellar biosynthetic protein FliQ [Pseudomonas putida KT2440]
Length = 89
Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 52/88 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +++ R A+W A ++ ++ +G+++A QA TQI E TL+F+P+++ + I
Sbjct: 1 MTPEVAVDLFRDALWLTTLMVAVLVVPSLLVGLVVAMFQAATQINEQTLSFLPRLLVMLI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
TLII+ P++ + ++T + + I +
Sbjct: 61 TLIIAGPWLVQKFMEYITTLYTNIPQLI 88
>gi|152985438|ref|YP_001349234.1| flagellar biosynthesis protein FliQ [Pseudomonas aeruginosa PA7]
gi|150960596|gb|ABR82621.1| flagellar biosynthetic protein FliQ [Pseudomonas aeruginosa PA7]
Length = 89
Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 49/85 (57%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M L++ R A+W A ++ ++ +G+++A QA TQI E TL+F+P+++ + +
Sbjct: 1 MTPEVALDLFREALWLTAMIVAVLVVPSLLVGLVVAMFQAATQINEQTLSFLPRLLVILL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
TLI+ P++ Q+ + ++ I
Sbjct: 61 TLIVLGPWLLRQLMEYTQALIGNIP 85
>gi|182680451|ref|YP_001834597.1| flagellar biosynthesis protein FliQ [Beijerinckia indica subsp.
indica ATCC 9039]
gi|182636334|gb|ACB97108.1| flagellar biosynthetic protein FliQ [Beijerinckia indica subsp.
indica ATCC 9039]
Length = 88
Score = 64.1 bits (155), Expect = 7e-09, Method: Composition-based stats.
Identities = 47/87 (54%), Positives = 67/87 (77%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEAD LE+ R+A+WT+L + P + +AM +G++IA QALTQIQE+TLTFVPKI+ +F+
Sbjct: 1 MNEADALELIRSAIWTMLVVAGPAVAAAMAIGLIIALFQALTQIQEMTLTFVPKIVVMFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
L+++APF+G QI SF + +RIQ
Sbjct: 61 ILMLAAPFMGSQIYSFTERIYARIQYG 87
>gi|170722843|ref|YP_001750531.1| flagellar biosynthesis protein FliQ [Pseudomonas putida W619]
gi|169760846|gb|ACA74162.1| flagellar biosynthetic protein FliQ [Pseudomonas putida W619]
Length = 89
Score = 64.1 bits (155), Expect = 7e-09, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 52/88 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +++ R A+W A ++ ++ +G+++A QA TQI E TL+F+P+++ + +
Sbjct: 1 MTPEVAVDLFRDALWLTTLMVAILVVPSLLVGLVVAMFQAATQINEQTLSFLPRLLVMLV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
TLI++ P++ + ++T + + I +
Sbjct: 61 TLIVAGPWLTQKFMEYITGLYTSIPQLI 88
>gi|325273553|ref|ZP_08139783.1| flagellar biosynthesis protein FliQ [Pseudomonas sp. TJI-51]
gi|324101313|gb|EGB98929.1| flagellar biosynthesis protein FliQ [Pseudomonas sp. TJI-51]
Length = 89
Score = 64.1 bits (155), Expect = 7e-09, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 52/88 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +++ R A+W A ++ ++ +G+++A QA TQI E TL+F+P+++ + I
Sbjct: 1 MTPEVAVDLFRDALWLTTLMVAVLVVPSLLVGLVVAMFQAATQINEQTLSFLPRLLVMLI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
TLI++ P++ + ++T + + I +
Sbjct: 61 TLIVAGPWLVQKFMEYITTLYANIPQLI 88
>gi|118592627|ref|ZP_01550017.1| Type III secretory pathway, component EscS [Stappia aggregata IAM
12614]
gi|118434678|gb|EAV41329.1| Type III secretory pathway, component EscS [Stappia aggregata IAM
12614]
Length = 89
Score = 63.7 bits (154), Expect = 7e-09, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 51/85 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M AD L + AM+ +L S P + +A +G+ ++ LQALTQIQE TL F K+IAV I
Sbjct: 1 MAPADALHVTTEAMFLVLLLSMPPILAASIVGLAVSLLQALTQIQEQTLPFAAKLIAVAI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
+L ++ ++GG++ +F +
Sbjct: 61 SLAATSTYLGGEMYNFTMNLFDTFP 85
>gi|296439625|sp|P0CF98|FLIQ_CLOTE RecName: Full=Flagellar biosynthetic protein FliQ
Length = 89
Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats.
Identities = 33/86 (38%), Positives = 52/86 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E ++ + R A+ T L SAP+L SA+ +G+LI+ LQA TQIQE TLTFVPK+I V +
Sbjct: 1 MSENMIMGVMRDAISTGLLVSAPILISAIVVGLLISILQATTQIQEQTLTFVPKLITVAL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
+ + ++ + + I +
Sbjct: 61 VGLFTGNWMLHNLVGLTNRIFELIAN 86
>gi|144900466|emb|CAM77330.1| Bacterial export protein FliQ, family 3 [Magnetospirillum
gryphiswaldense MSR-1]
Length = 89
Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats.
Identities = 35/87 (40%), Positives = 62/87 (71%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M EA++++IAR + T++ +AP L + + +G++I+ LQ +TQIQE+TLTFVPK++ VF
Sbjct: 1 MTEAELIDIARDGISTLIFVAAPPLLTGLAVGLVISILQTITQIQEMTLTFVPKVLLVFG 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
++I+ PF+ G ++ F +L R+ +
Sbjct: 61 SIILFLPFMLGLLTDFWKAMLDRVITG 87
>gi|27550056|gb|AAO18039.1| LscS [Photorhabdus luminescens]
Length = 88
Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats.
Identities = 34/85 (40%), Positives = 53/85 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ AD+L ++W +L S P + A +G L++ +QALTQIQE TL FV K+IAV I
Sbjct: 1 MSNADILHFTSQSLWLVLILSLPPVLMAAAVGTLVSLIQALTQIQEQTLGFVIKLIAVVI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
TL +A ++G ++ SF + ++
Sbjct: 61 TLFATATWLGNELYSFANMTFLKVP 85
>gi|146312186|ref|YP_001177260.1| flagellar biosynthesis protein FliQ [Enterobacter sp. 638]
gi|145319062|gb|ABP61209.1| flagellar biosynthetic protein FliQ [Enterobacter sp. 638]
Length = 89
Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 55/85 (64%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + AM +S +AP+L A+ G++I+ LQA TQI E+TL+F+PKIIAVF+
Sbjct: 1 MTPESVMMMGTEAMKVAISVAAPLLLVALVTGLVISILQAATQINEMTLSFIPKIIAVFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
T+I++ P++ + ++ + + +
Sbjct: 61 TIIVAGPWMLNLLLDYMRNLFTNLP 85
>gi|23016625|ref|ZP_00056379.1| COG1987: Flagellar biosynthesis pathway, component FliQ
[Magnetospirillum magnetotacticum MS-1]
Length = 89
Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats.
Identities = 33/87 (37%), Positives = 58/87 (66%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M E +++++AR + +L +AP L + + +G++I+ Q LTQIQE TLTFVPK++ VF
Sbjct: 1 MTEPELIDVARETIMVMLKVAAPTLLTGLVVGLIISIFQTLTQIQEQTLTFVPKMLLVFA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
++I+ PF+ ++ F LV+ R+ +
Sbjct: 61 SMILFLPFMLHSLTEFWRLVMDRVVAG 87
>gi|163802010|ref|ZP_02195906.1| translocation protein in type III secretion [Vibrio sp. AND4]
gi|159174151|gb|EDP58959.1| translocation protein in type III secretion [Vibrio sp. AND4]
Length = 88
Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats.
Identities = 35/85 (41%), Positives = 54/85 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN A+++ A+ +L S P + A +G L++ +QALTQ+QE TL FV K+IAV I
Sbjct: 1 MNPAEIIHFTTQALTLVLFLSLPPILVAALVGTLVSLIQALTQVQEQTLGFVVKLIAVII 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
TL ++ ++G ++ SF TL L +I
Sbjct: 61 TLFVTTQWLGAELHSFATLTLDKIP 85
>gi|46578460|ref|YP_009268.1| flagellar biosynthetic protein FliQ [Desulfovibrio vulgaris str.
Hildenborough]
gi|120603956|ref|YP_968356.1| flagellar biosynthetic protein FliQ [Desulfovibrio vulgaris DP4]
gi|46447871|gb|AAS94527.1| flagellar biosynthetic protein FliQ [Desulfovibrio vulgaris str.
Hildenborough]
gi|120564185|gb|ABM29929.1| flagellar biosynthetic protein FliQ [Desulfovibrio vulgaris DP4]
gi|311232388|gb|ADP85242.1| flagellar biosynthetic protein FliQ [Desulfovibrio vulgaris RCH1]
Length = 89
Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 56/88 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ AR ++ L S P+L + +G++++ +QA TQIQE+TL+F+PK++++FI
Sbjct: 1 MTPEFVIGFARQSIELALLISMPILGVGLAVGVVVSVIQAATQIQEMTLSFIPKVVSIFI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+++S P+I ++ +F V I + +
Sbjct: 61 AVLVSFPWIMDKMVTFTREVFLNIPNYI 88
>gi|295690543|ref|YP_003594236.1| flagellar biosynthetic protein FliQ [Caulobacter segnis ATCC
21756]
gi|295432446|gb|ADG11618.1| flagellar biosynthetic protein FliQ [Caulobacter segnis ATCC
21756]
Length = 87
Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats.
Identities = 37/86 (43%), Positives = 56/86 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M A+VL++ R A+W L APVL + +G+ I QALTQIQE TL + PKI+A+F+
Sbjct: 1 MTGAEVLDVGRDAIWLTLKLCAPVLIVGLVVGVAIGLFQALTQIQEQTLVYAPKIVAIFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
+L+I P +G +S+F+ + +RI
Sbjct: 61 SLLIFLPMMGALMSAFMRQIAARIAG 86
>gi|294141000|ref|YP_003556978.1| type III secretion system EscS protein [Shewanella violacea
DSS12]
gi|293327469|dbj|BAJ02200.1| type III secretion system EscS protein [Shewanella violacea
DSS12]
Length = 102
Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 55/86 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E ++ + +W +L S PV+ A +G++++ +QALTQIQ+ TL F+ K++AV I
Sbjct: 14 MSENIIMHLTSELLWIVLLLSLPVVIVASIIGVIVSLVQALTQIQDQTLQFLIKLVAVCI 73
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
TL++S ++GG + ++ + +I
Sbjct: 74 TLVVSYHWMGGSLLNYAGMTFDQISH 99
>gi|15616705|ref|NP_239917.1| flagellar biosynthetic protein FliQ [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
gi|219681461|ref|YP_002467846.1| flagellar biosynthetic protein FliQ [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
gi|257471136|ref|ZP_05635135.1| flagellar biosynthetic protein FliQ [Buchnera aphidicola str.
LSR1 (Acyrthosiphon pisum)]
gi|11386789|sp|P57185|FLIQ_BUCAI RecName: Full=Flagellar biosynthetic protein FliQ
gi|25303012|pir||C84939 flagellar biosynthetic protein fliQ [imported] - Buchnera sp.
(strain APS)
gi|10038768|dbj|BAB12803.1| flagellar biosynthetic protein fliQ [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
gi|219624304|gb|ACL30459.1| flagellar biosynthetic protein FliQ [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
gi|311086977|gb|ADP67057.1| flagellar biosynthetic protein FliQ [Buchnera aphidicola str.
JF99 (Acyrthosiphon pisum)]
gi|311087554|gb|ADP67633.1| flagellar biosynthetic protein FliQ [Buchnera aphidicola str.
JF98 (Acyrthosiphon pisum)]
Length = 89
Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 51/84 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+E+ AM L ++P+L +A+ G++I+ LQA TQ+ E TL+F+PKII+V
Sbjct: 1 MTSEYVMELFYNAMKVALIIASPLLLAALISGLIISILQAATQVNEQTLSFIPKIISVLG 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
+ I P++ G + ++ + + I
Sbjct: 61 VISILGPWMLGVMLDYMHNLFNNI 84
>gi|302392378|ref|YP_003828198.1| flagellar biosynthetic protein FliQ [Acetohalobium arabaticum DSM
5501]
gi|302204455|gb|ADL13133.1| flagellar biosynthetic protein FliQ [Acetohalobium arabaticum DSM
5501]
Length = 89
Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 53/88 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M E V+E+ R A+ ++ +AP+L + G+ I+ LQA TQIQE TL F+PKI+AV +
Sbjct: 1 MTEQLVIELGRRALLQVVMVTAPMLGLGLLAGLAISILQATTQIQEQTLVFIPKILAVIV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+II P++ + FV + I + +
Sbjct: 61 AIIIFGPWMLNTLVDFVHNLFLNIPNYV 88
>gi|119714989|ref|YP_921954.1| export protein FliQ [Nocardioides sp. JS614]
gi|119535650|gb|ABL80267.1| export protein FliQ, family 3 [Nocardioides sp. JS614]
Length = 89
Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 54/88 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M++ ++EIA + L SAP+L +++ +G I+ Q+LTQIQE TL FVPK+I V I
Sbjct: 1 MSDTAIIEIALRTLVVALKLSAPILVTSLVIGFAISLFQSLTQIQEATLAFVPKLIGVGI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L++S ++ + SF + + I + L
Sbjct: 61 ALLLSGNWMMHTLVSFTNDLFAGIPALL 88
>gi|209964221|ref|YP_002297136.1| flagellar biosynthesis protein FliQ [Rhodospirillum centenum SW]
gi|209957687|gb|ACI98323.1| flagellar biosynthesis protein FliQ [Rhodospirillum centenum SW]
Length = 91
Score = 63.7 bits (154), Expect = 9e-09, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 54/84 (64%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +ADV+ I R A+ ++ P++ + +G++I+ QALTQIQE T+TFVPKI+ +F
Sbjct: 1 MTDADVIAIGREALLVVVIVGGPLMLIGLVVGLVISLFQALTQIQEQTITFVPKIVIMFA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
++ PF+ G + SF+ + +I
Sbjct: 61 AMVFLMPFMLGHLRSFMEGIADKI 84
>gi|283853452|ref|ZP_06370696.1| flagellar biosynthetic protein FliQ [Desulfovibrio sp. FW1012B]
gi|283571172|gb|EFC19188.1| flagellar biosynthetic protein FliQ [Desulfovibrio sp. FW1012B]
Length = 89
Score = 63.3 bits (153), Expect = 9e-09, Method: Composition-based stats.
Identities = 34/88 (38%), Positives = 60/88 (68%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ ++R A+ T L + P+L ++ +G++I+ LQA TQIQE+TLTFVPKI+++FI
Sbjct: 1 MTTDMVVALSRQAIETALFLALPMLGVSLVVGVIISVLQAATQIQEMTLTFVPKILSMFI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L+I+ P++ ++ +F +L I + +
Sbjct: 61 ALLIAFPWMMDKMLNFTRELLMNIPTYI 88
>gi|149178713|ref|ZP_01857296.1| flagellar biosynthesis protein Q [Planctomyces maris DSM 8797]
gi|148842411|gb|EDL56791.1| flagellar biosynthesis protein Q [Planctomyces maris DSM 8797]
Length = 88
Score = 63.3 bits (153), Expect = 9e-09, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 58/88 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ + VL++ R + +L S PV+ +A+ +G++I+ QA+TQIQ+ T++FVPKII + +
Sbjct: 1 MDTSTVLDLGREGLLIMLEVSGPVMLTAVVVGLVISIGQAVTQIQDQTISFVPKIIMMVL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
++ + P+I + + T +++ I + L
Sbjct: 61 AILYTLPWITSLMVEYSTNLITNIPTRL 88
>gi|148546751|ref|YP_001266853.1| flagellar biosynthesis protein FliQ [Pseudomonas putida F1]
gi|148510809|gb|ABQ77669.1| flagellar biosynthetic protein FliQ [Pseudomonas putida F1]
Length = 89
Score = 63.3 bits (153), Expect = 9e-09, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 52/88 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +++ R A+W A ++ ++ +G+++A QA TQI E TL+F+P+++ + I
Sbjct: 1 MTPEVAVDLFRDALWLTTLLVAVLVVPSLLVGLVVAMFQAATQINEQTLSFLPRLLVMLI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
TLII+ P++ + ++T + + I +
Sbjct: 61 TLIIAGPWLVQKFMEYITSLYTSIPQLI 88
>gi|319944173|ref|ZP_08018449.1| flagellar biosynthesis protein FliQ [Lautropia mirabilis ATCC
51599]
gi|319742468|gb|EFV94879.1| flagellar biosynthesis protein FliQ [Lautropia mirabilis ATCC
51599]
Length = 94
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 57/86 (66%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M VL I R A+ T++++++P+L + G+LI+ LQALTQI E TL+FVPK++ +
Sbjct: 1 MTPETVLTIGRQALETLMTTASPILLVILVTGLLISILQALTQINEATLSFVPKLVLSSL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
L+++ P++ ++ F++ ++ I +
Sbjct: 61 VLVLAGPWMLSNLTDFISRMILSIPA 86
>gi|52842015|ref|YP_095814.1| flagellar biosynthetic protein FliQ [Legionella pneumophila
subsp. pneumophila str. Philadelphia 1]
gi|148359332|ref|YP_001250539.1| flagellar biosynthetic protein FliQ [Legionella pneumophila str.
Corby]
gi|296107379|ref|YP_003619079.1| flagellar biosynthetic protein FliQ [Legionella pneumophila
2300/99 Alcoy]
gi|52629126|gb|AAU27867.1| flagellar biosynthetic protein FliQ [Legionella pneumophila
subsp. pneumophila str. Philadelphia 1]
gi|148281105|gb|ABQ55193.1| flagellar biosynthetic protein FliQ [Legionella pneumophila str.
Corby]
gi|295649280|gb|ADG25127.1| flagellar biosynthetic protein FliQ [Legionella pneumophila
2300/99 Alcoy]
gi|307610488|emb|CBX00060.1| flagellar biosynthetic protein FliQ [Legionella pneumophila 130b]
Length = 89
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 49/85 (57%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + +++ IL A ++ + +G++I+ QA TQI E +L+F+PK+ F+
Sbjct: 1 MTPESVVSLFSDSVYIILLLLAVLILPGLIVGLIISMFQAATQINETSLSFIPKLFVTFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
LI++ P++ + ++ ++S I
Sbjct: 61 VLILAGPWLLKTLINYTDTLISNIP 85
>gi|54294675|ref|YP_127090.1| flagellar biosynthetic protein FliQ [Legionella pneumophila str.
Lens]
gi|54297701|ref|YP_124070.1| flagellar biosynthetic protein FliQ [Legionella pneumophila str.
Paris]
gi|53751486|emb|CAH12904.1| Flagellar biosynthetic protein FliQ [Legionella pneumophila str.
Paris]
gi|53754507|emb|CAH15991.1| Flagellar biosynthetic protein FliQ [Legionella pneumophila str.
Lens]
Length = 89
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 49/85 (57%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + +++ IL + ++ + +G++I+ QA TQI E +L+F+PK+ F+
Sbjct: 1 MTPESVVSLFSDSVYIILLLLSVLILPGLIVGLIISMFQAATQINETSLSFIPKLFVTFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
LI++ P++ + ++ ++S I
Sbjct: 61 VLILAGPWLLKTLINYTDTLISNIP 85
>gi|149908446|ref|ZP_01897109.1| flagellar biosynthesis protein [Moritella sp. PE36]
gi|149808609|gb|EDM68544.1| flagellar biosynthesis protein [Moritella sp. PE36]
Length = 89
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 49/85 (57%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M ++I R A+WT+L V+ + +G++++ QA T I E TL+F+P++IA +
Sbjct: 1 MAPEVFVDIFRQALWTVLLLVCAVVVPGLIVGLVVSVFQAATSINEQTLSFLPRLIATLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
LI A + G++ F T ++ +I
Sbjct: 61 ALIYGAHWGFGRLMEFFTNMILQIP 85
>gi|153832452|ref|ZP_01985119.1| VscS [Vibrio harveyi HY01]
gi|148871247|gb|EDL70119.1| VscS [Vibrio harveyi HY01]
Length = 88
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 35/85 (41%), Positives = 54/85 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN A+++ A+ +L S P + A +G L++ +QALTQ+QE TL FV K+IAV I
Sbjct: 1 MNPAEIIHFTTQALTLVLFLSLPPILVAALVGTLVSLVQALTQVQEQTLGFVVKLIAVII 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
TL ++ ++G ++ SF TL L +I
Sbjct: 61 TLFVTTQWLGAELHSFATLTLDKIP 85
>gi|83646011|ref|YP_434446.1| type III secretory pathway subunit EscS [Hahella chejuensis KCTC
2396]
gi|83634054|gb|ABC30021.1| Type III secretory pathway, component EscS [Hahella chejuensis
KCTC 2396]
Length = 89
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/86 (38%), Positives = 52/86 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M EADV++ A+ +L S P + A F G+L++ LQA+TQIQE TL F K++A+
Sbjct: 1 MTEADVIQYTTEALLLVLILSMPPILVATFTGVLVSLLQAVTQIQEQTLGFAVKLVAIVA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
TL ++A ++G ++ + LV I
Sbjct: 61 TLYLTARWLGMEMYQYTVLVFDAIPD 86
>gi|291484189|dbj|BAI85264.1| flagellar biosynthesis protein FliQ [Bacillus subtilis subsp.
natto BEST195]
Length = 81
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/79 (39%), Positives = 48/79 (60%)
Query: 9 IARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPF 68
+A A++ L S P+L A+ +G++++ QA TQIQE TL F+PKI+AV + LI P+
Sbjct: 1 MAEKAVYVTLMISGPLLAIALLVGLIVSIFQATTQIQEQTLAFIPKIVAVLLALIFFGPW 60
Query: 69 IGGQISSFVTLVLSRIQSS 87
+ I SF T + S +
Sbjct: 61 MLSTILSFTTELFSNLNRF 79
>gi|15615004|ref|NP_243307.1| flagellar biosynthesis protein FliQ [Bacillus halodurans C-125]
gi|10175061|dbj|BAB06160.1| flagellar protein required for flagellar formation [Bacillus
halodurans C-125]
Length = 89
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 54/88 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ ++ IA +WT+L + P+L A+ LG+ ++ QA TQIQE TL F+PKI+ V +
Sbjct: 1 MSVDFIIGIAERGVWTVLLVAGPLLLVALGLGLFVSIFQATTQIQEQTLAFIPKIVGVLV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+L++ P++ Q+ +F + + + +
Sbjct: 61 SLVLFGPWMLSQLLNFAYSIFNNLHRFI 88
>gi|325288790|ref|YP_004264971.1| flagellar biosynthetic protein FliQ [Syntrophobotulus glycolicus
DSM 8271]
gi|324964191|gb|ADY54970.1| flagellar biosynthetic protein FliQ [Syntrophobotulus glycolicus
DSM 8271]
Length = 90
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 56/87 (64%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + ++ +A+ AMWT+L P+L ++ +G++++ QA+TQIQE TL+F+PK++ + +
Sbjct: 1 MTQNQIIFMAKEAMWTVLLVGGPLLALSLLIGLVVSIFQAMTQIQEQTLSFIPKLVVIAV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
L++ P++ ++S+ + + +
Sbjct: 61 ALLLLGPWMLNIMTSYTVNIFHNLVTY 87
>gi|94495440|ref|ZP_01302020.1| flagellar biosynthetic protein [Sphingomonas sp. SKA58]
gi|94424828|gb|EAT09849.1| flagellar biosynthetic protein [Sphingomonas sp. SKA58]
Length = 90
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 47/87 (54%)
Query: 2 NEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFIT 61
N L +A+ A+W ++AP+L A+ G++I +QA T I E TL+F+PK+I V
Sbjct: 3 NADFFLGLAQQALWITALAAAPILIPALISGLIIGMIQAATSINEQTLSFIPKLIVVGAM 62
Query: 62 LIISAPFIGGQISSFVTLVLSRIQSSL 88
L++ I ++ F + RI L
Sbjct: 63 LVLFGGSIMVLVADFTREIFERIPDLL 89
>gi|257095349|ref|YP_003168990.1| flagellar biosynthetic protein FliQ [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257047873|gb|ACV37061.1| flagellar biosynthetic protein FliQ [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 89
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 52/85 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V++I R A+ L SAP+L +A+ +G++++ QA TQI E TL FVPK++ +F+
Sbjct: 1 MTPELVMDIGRQAVEMTLLLSAPLLLAALVIGLIVSVFQAATQINEQTLAFVPKLVGMFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
L+++ P++ + +V + I
Sbjct: 61 ILLLAGPWMLQLMVEYVRRLFESIP 85
>gi|51246524|ref|YP_066408.1| flagellar biosynthetic protein (FliQ) [Desulfotalea psychrophila
LSv54]
gi|50877561|emb|CAG37401.1| probable flagellar biosynthetic protein (FliQ) [Desulfotalea
psychrophila LSv54]
Length = 88
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 34/87 (39%), Positives = 55/87 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
+ + + R A+ TIL +AP+L + M +G+ ++ QA TQI E TLTF+PKIIAVF+
Sbjct: 2 LTPELAVNVCRKAIQTILMCAAPMLLAGMIVGLFVSIFQAATQINEQTLTFIPKIIAVFV 61
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
T+++ P+I + +F + V + I S
Sbjct: 62 TMLLFGPWIIKLLLTFTSGVFTTIASF 88
>gi|218887306|ref|YP_002436627.1| flagellar biosynthetic protein FliQ [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218758260|gb|ACL09159.1| flagellar biosynthetic protein FliQ [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 89
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 56/88 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ AR ++ L S P+L + +G++++ +QA TQIQE+TL+F+PKI+++F+
Sbjct: 1 MTPEMVIAFARQSIEIALLISLPMLGVGLVVGVVVSIIQAATQIQEMTLSFIPKIVSIFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L+IS P+I ++ ++ V I + +
Sbjct: 61 ALLISFPWIMDKMITYTREVFLNIPNYI 88
>gi|239817148|ref|YP_002946058.1| flagellar biosynthetic protein FliQ [Variovorax paradoxus S110]
gi|239803725|gb|ACS20792.1| flagellar biosynthetic protein FliQ [Variovorax paradoxus S110]
Length = 89
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 52/88 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + A+ L AP+L A+ +G++I+ QA TQI E TL+F+PK++AVF
Sbjct: 1 MTPESVMSLGSQAIHVSLLLGAPMLLVALVVGLVISIFQAATQINEATLSFIPKLLAVFA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L+++ P++ Q+ ++ + S I +
Sbjct: 61 VLVLAGPWMLAQMLDYIRTLFSSIPQLV 88
>gi|332669210|ref|YP_004452218.1| flagellar biosynthetic protein FliQ [Cellulomonas fimi ATCC 484]
gi|332338248|gb|AEE44831.1| flagellar biosynthetic protein FliQ [Cellulomonas fimi ATCC 484]
Length = 90
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 55/88 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ VL++ A+ SAPVL +A+ +G +++ LQ++TQIQEVTL+FVPK +A +
Sbjct: 1 MDTTAVLDVGVDALILAAKLSAPVLVTALVVGFVVSLLQSVTQIQEVTLSFVPKAVAAAV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L++ ++ ++ +F + RI + +
Sbjct: 61 ALVVCGHWMISELVTFTHELFERIPTLV 88
>gi|70729044|ref|YP_258778.1| flagellar biosynthesis protein FliQ [Pseudomonas fluorescens
Pf-5]
gi|68343343|gb|AAY90949.1| flagellar biosynthetic protein FliQ [Pseudomonas fluorescens
Pf-5]
Length = 89
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 49/88 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +++ R A+W A ++ ++ +G+++A QA TQI E TL+F+P+++ + +
Sbjct: 1 MTPEVAVDLFREALWLTTMMVAVLVVPSLLVGLMVAMFQAATQINEQTLSFLPRLLVMLV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
TLI++ P++ ++ + I +
Sbjct: 61 TLIVAGPWLVQTFMEYIRQLYGSIPQLI 88
>gi|332799192|ref|YP_004460691.1| flagellar biosynthetic protein FliQ [Tepidanaerobacter sp. Re1]
gi|332696927|gb|AEE91384.1| flagellar biosynthetic protein FliQ [Tepidanaerobacter sp. Re1]
Length = 89
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 36/88 (40%), Positives = 53/88 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + V+ IAR A+ L SAP+L M +GI+++ QA TQIQE TLTFVPKII V
Sbjct: 1 MTQEMVIYIAREALSVALLVSAPMLLLGMLVGIIVSIFQATTQIQEQTLTFVPKIIVVMF 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+++I P++ I+ F + S + +
Sbjct: 61 SMVIFGPWMLTIITQFTYNLFSDLPKFI 88
>gi|170748650|ref|YP_001754910.1| flagellar biosynthetic protein FliQ [Methylobacterium
radiotolerans JCM 2831]
gi|170655172|gb|ACB24227.1| flagellar biosynthetic protein FliQ [Methylobacterium
radiotolerans JCM 2831]
Length = 88
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/87 (36%), Positives = 58/87 (66%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +L+IAR ++ L + P++ A+ +G+ ++ +QALTQIQE TL +VPK++AVF
Sbjct: 1 MTGLAILDIARDGIFVFLKVAGPLMLVALAVGLAVSLVQALTQIQEQTLIYVPKVVAVFA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
L++ PF+G ++ ++T + +RI +
Sbjct: 61 ALLLMLPFMGDAMAGYMTRIAARIAAG 87
>gi|163781852|ref|ZP_02176852.1| flagellar biosynthesis protein FliQ [Hydrogenivirga sp.
128-5-R1-1]
gi|159883072|gb|EDP76576.1| flagellar biosynthesis protein FliQ [Hydrogenivirga sp.
128-5-R1-1]
Length = 89
Score = 63.0 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 50/85 (58%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ ++ I + A+ + + PVL + +G++++ QA TQIQE+TL ++PKI+A +
Sbjct: 1 MSPDLIVSIGQRALEMAVLLAMPVLLATFIVGLVVSIFQAATQIQEMTLAYIPKIVAAMV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
T+ + ++ G++ F VL I
Sbjct: 61 TIFVLGGWMMGKLVDFTKEVLINIP 85
>gi|158320530|ref|YP_001513037.1| flagellar biosynthetic protein FliQ [Alkaliphilus oremlandii
OhILAs]
gi|158140729|gb|ABW19041.1| flagellar biosynthetic protein FliQ [Alkaliphilus oremlandii
OhILAs]
Length = 89
Score = 63.0 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 57/88 (64%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E+ V+E+ + AM+TIL SAP L + +G+ ++ QA TQIQE TL F+PKI+A+
Sbjct: 1 MSESMVIELGQQAMFTILLLSAPTLLIGLIVGLAVSIFQATTQIQEATLAFIPKIVAILG 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+L++ P++ + +F + + + + +
Sbjct: 61 SLVVFGPWLLSMMINFTLKLFTNMNNFI 88
>gi|325109028|ref|YP_004270096.1| flagellar biosynthetic protein FliQ [Planctomyces brasiliensis
DSM 5305]
gi|324969296|gb|ADY60074.1| flagellar biosynthetic protein FliQ [Planctomyces brasiliensis
DSM 5305]
Length = 88
Score = 63.0 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 53/85 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ +EI R A+ + APV+ AM +G++I+ QA+TQ+Q+ TL+FVPKI+ +
Sbjct: 1 MDVDLAVEITRQAILLAVIVGAPVMLVAMLVGLVISLFQAVTQLQDQTLSFVPKILLMVG 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
T+++ P++ GQI + + + I
Sbjct: 61 TVVVLLPWLIGQIVDYTHELWTNIP 85
>gi|15596644|ref|NP_250138.1| flagellar biosynthesis protein FliQ [Pseudomonas aeruginosa PAO1]
gi|107100881|ref|ZP_01364799.1| hypothetical protein PaerPA_01001911 [Pseudomonas aeruginosa
PACS2]
gi|116049392|ref|YP_791805.1| flagellar biosynthesis protein FliQ [Pseudomonas aeruginosa
UCBPP-PA14]
gi|218892680|ref|YP_002441549.1| flagellar biosynthesis protein FliQ [Pseudomonas aeruginosa
LESB58]
gi|254234546|ref|ZP_04927869.1| flagellar biosynthetic protein FliQ [Pseudomonas aeruginosa
C3719]
gi|254239797|ref|ZP_04933119.1| flagellar biosynthetic protein FliQ [Pseudomonas aeruginosa 2192]
gi|296390186|ref|ZP_06879661.1| flagellar biosynthesis protein FliQ [Pseudomonas aeruginosa PAb1]
gi|313106446|ref|ZP_07792677.1| flagellar biosynthetic protein FliQ [Pseudomonas aeruginosa
39016]
gi|9947398|gb|AAG04836.1|AE004574_7 flagellar biosynthetic protein FliQ [Pseudomonas aeruginosa PAO1]
gi|115584613|gb|ABJ10628.1| flagellar biosynthetic protein FliQ [Pseudomonas aeruginosa
UCBPP-PA14]
gi|126166477|gb|EAZ51988.1| flagellar biosynthetic protein FliQ [Pseudomonas aeruginosa
C3719]
gi|126193175|gb|EAZ57238.1| flagellar biosynthetic protein FliQ [Pseudomonas aeruginosa 2192]
gi|218772908|emb|CAW28720.1| flagellar biosynthetic protein FliQ [Pseudomonas aeruginosa
LESB58]
gi|310879179|gb|EFQ37773.1| flagellar biosynthetic protein FliQ [Pseudomonas aeruginosa
39016]
Length = 89
Score = 63.0 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 48/85 (56%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M L++ R A+W ++ ++ +G+++A QA TQI E TL+F+P+++ + +
Sbjct: 1 MTPEVALDLFREALWLTAMIVGVLVVPSLLVGLVVAMFQAATQINEQTLSFLPRLMVILL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
TLI+ P++ Q+ + ++ I
Sbjct: 61 TLIVLGPWLLRQLMEYTQTLIGNIP 85
>gi|323143900|ref|ZP_08078562.1| surface presentation of antigens protein SpaQ [Succinatimonas
hippei YIT 12066]
gi|322416327|gb|EFY06999.1| surface presentation of antigens protein SpaQ [Succinatimonas
hippei YIT 12066]
Length = 87
Score = 63.0 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 49/81 (60%)
Query: 3 EADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITL 62
+A+V++I + +L S P + A +G+L++ +QA+TQ+QE TL+F K+IAV ITL
Sbjct: 2 DAEVVDIISQCFYLVLILSLPPILVASVVGVLLSLIQAITQLQEQTLSFGIKLIAVCITL 61
Query: 63 IISAPFIGGQISSFVTLVLSR 83
++A + ++ F +
Sbjct: 62 FLTAGWFSNELLRFSQNIFDH 82
>gi|77457777|ref|YP_347282.1| flagellar biosynthesis protein FliQ [Pseudomonas fluorescens
Pf0-1]
gi|77381780|gb|ABA73293.1| flagellar biosynthetic protein FliQ [Pseudomonas fluorescens
Pf0-1]
Length = 89
Score = 63.0 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 49/85 (57%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M ++I R A+W A ++ ++ +G+L++ QA TQI E TL+F+P+++ + +
Sbjct: 1 MTPEVAVDIFREALWLTTMMVAILVVPSLLVGLLVSMFQAATQINEQTLSFLPRLLVMLV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
TLI++ P++ ++T + I
Sbjct: 61 TLIVAGPWLVQTFMEYITQLYKNIP 85
>gi|303326582|ref|ZP_07357025.1| flagellar biosynthetic protein FliQ [Desulfovibrio sp. 3_1_syn3]
gi|302864498|gb|EFL87429.1| flagellar biosynthetic protein FliQ [Desulfovibrio sp. 3_1_syn3]
Length = 89
Score = 63.0 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 55/88 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ V+ R A+ L + P+L + +G++++ +QA TQIQE+TLTF+PKI+ +FI
Sbjct: 1 MSPDFVIGFGRQAIELCLMMALPMLGVGLGVGVVVSVIQAATQIQEMTLTFIPKIVCMFI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L+++ P++ ++ +F V I + +
Sbjct: 61 ALLLALPWLMERMITFTRDVFINIPTYV 88
>gi|301165897|emb|CBW25470.1| flagellar biosynthetic protein FliQ [Bacteriovorax marinus SJ]
Length = 91
Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 51/85 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + +I A+ L ++P+L ++ +GIL++ QA+TQI E TL+F+PKI+ +
Sbjct: 1 MGFDGISDITNNAVKIALMIASPMLVGSLVMGILVSIFQAVTQINEQTLSFIPKILVIVG 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
L+I AP++ +++F ++ I
Sbjct: 61 ALVIFAPWMSDTLTTFTKELIISIP 85
>gi|160896098|ref|YP_001561680.1| flagellar biosynthetic protein FliQ [Delftia acidovorans SPH-1]
gi|160361682|gb|ABX33295.1| flagellar biosynthetic protein FliQ [Delftia acidovorans SPH-1]
Length = 89
Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 45/85 (52%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M VL R A+ +L S PVL + +G+ ++ QA+TQ+ E TL FVPK+I+ +
Sbjct: 1 MTSQYVLTFGREALTLLLMISMPVLGVVLAVGLAVSVFQAVTQVHEATLAFVPKLISAVL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
I+ P++ + F+ + I
Sbjct: 61 VFAIAGPWMLSTLVDFIRRTIETIP 85
>gi|108761227|ref|YP_633785.1| putative type III secretion system protein [Myxococcus xanthus DK
1622]
gi|108465107|gb|ABF90292.1| putative type III secretion system protein [Myxococcus xanthus DK
1622]
Length = 89
Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 51/84 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + L + R A+ ++ +S P + +++ +G L + QA TQ+QE TL+ VPK+ A +
Sbjct: 1 MTQDVFLTLGREALLLMVMASLPPIGASLVVGFLSSLFQATTQLQESTLSVVPKLCAAVL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
L+++ P+I GQ++ F +L I
Sbjct: 61 ALVLAGPWIAGQLTRFTHQLLMLI 84
>gi|296124298|ref|YP_003632076.1| export protein FliQ family 3 [Planctomyces limnophilus DSM 3776]
gi|296016638|gb|ADG69877.1| export protein FliQ family 3 [Planctomyces limnophilus DSM 3776]
Length = 91
Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 50/88 (56%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M LE+ R A+ L P L SAM +G++I+ QA+TQ+QE TL+FVPK++ + +
Sbjct: 1 MTSDTALELCRNAVVVALMVCLPSLMSAMLVGLIISLAQAVTQLQEQTLSFVPKLVIMLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+++ P+ + S+ + S I L
Sbjct: 61 VALLTLPWSMSLMDSYALDLYSSIPERL 88
>gi|160880830|ref|YP_001559798.1| flagellar biosynthetic protein FliQ [Clostridium phytofermentans
ISDg]
gi|160429496|gb|ABX43059.1| flagellar biosynthetic protein FliQ [Clostridium phytofermentans
ISDg]
Length = 89
Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 54/83 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E ++E+ R ++ I+ S+P+L +++ +G++++ LQ +T +QE TLTFVPK+I VF+
Sbjct: 1 MDENLLVELLRQTLFLIIKVSSPMLITSLVIGLVVSVLQTVTSVQEQTLTFVPKLIGVFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSR 83
L++ +I I+ + +
Sbjct: 61 VLMLCGNWIMKNITEYFLYLADN 83
>gi|74317114|ref|YP_314854.1| flagellar biosynthetic protein FliQ [Thiobacillus denitrificans
ATCC 25259]
gi|74056609|gb|AAZ97049.1| flagellar biosynthetic protein FliQ [Thiobacillus denitrificans
ATCC 25259]
Length = 84
Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 45/81 (55%)
Query: 8 EIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAP 67
++AR A+W ++ + P+L + + + ++ QA TQI E TL FVPK++ V + L
Sbjct: 3 DLARDALWLTVTIAGPLLVAGLLVAFAVSLFQAATQILEPTLAFVPKLLIVVLVLAALGG 62
Query: 68 FIGGQISSFVTLVLSRIQSSL 88
++ Q+ F VL+ S L
Sbjct: 63 WMSDQLVEFARGVLTDFPSLL 83
>gi|15804243|ref|NP_290282.1| hypothetical protein Z5134 [Escherichia coli O157:H7 EDL933]
gi|15833836|ref|NP_312609.1| EscS [Escherichia coli O157:H7 str. Sakai]
gi|168748641|ref|ZP_02773663.1| EscS [Escherichia coli O157:H7 str. EC4113]
gi|168753532|ref|ZP_02778539.1| EscS [Escherichia coli O157:H7 str. EC4401]
gi|168766129|ref|ZP_02791136.1| EscS [Escherichia coli O157:H7 str. EC4486]
gi|168772322|ref|ZP_02797329.1| EscS [Escherichia coli O157:H7 str. EC4196]
gi|168785597|ref|ZP_02810604.1| EscS [Escherichia coli O157:H7 str. EC869]
gi|195936265|ref|ZP_03081647.1| EscS [Escherichia coli O157:H7 str. EC4024]
gi|208820696|ref|ZP_03261016.1| EscS [Escherichia coli O157:H7 str. EC4042]
gi|215488993|ref|YP_002331424.1| T3SS structure protein EscS [Escherichia coli O127:H6 str.
E2348/69]
gi|254795657|ref|YP_003080494.1| LEE-encoded type III secretion system factor [Escherichia coli
O157:H7 str. TW14359]
gi|260869700|ref|YP_003236102.1| T3SS structure protein EscS [Escherichia coli O111:H- str. 11128]
gi|261225801|ref|ZP_05940082.1| LEE-encoded type III secretion system factor [Escherichia coli
O157:H7 str. FRIK2000]
gi|261258846|ref|ZP_05951379.1| T3SS structure protein EscS [Escherichia coli O157:H7 str.
FRIK966]
gi|12518476|gb|AAG58846.1|AE005597_4 escS [Escherichia coli O157:H7 str. EDL933]
gi|2865277|gb|AAC38370.1| EscS [Escherichia coli]
gi|3414916|gb|AAC31527.1| L0048 [Escherichia coli]
gi|13364057|dbj|BAB38005.1| type III secretion system EscS protein [Escherichia coli O157:H7
str. Sakai]
gi|54311601|emb|CAG17516.1| EscS protein [Escherichia coli]
gi|187771589|gb|EDU35433.1| EscS [Escherichia coli O157:H7 str. EC4196]
gi|188016981|gb|EDU55103.1| EscS [Escherichia coli O157:H7 str. EC4113]
gi|189359091|gb|EDU77510.1| EscS [Escherichia coli O157:H7 str. EC4401]
gi|189364420|gb|EDU82839.1| EscS [Escherichia coli O157:H7 str. EC4486]
gi|189374337|gb|EDU92753.1| EscS [Escherichia coli O157:H7 str. EC869]
gi|195957533|gb|ACG59644.1| type III secretion system protein EscS [Escherichia coli O157:H7]
gi|195957592|gb|ACG59702.1| type III secretion system protein EscS [Escherichia coli]
gi|195957649|gb|ACG59758.1| EscS [Escherichia coli]
gi|208740819|gb|EDZ88501.1| EscS [Escherichia coli O157:H7 str. EC4042]
gi|215267065|emb|CAS11510.1| T3SS structure protein EscS [Escherichia coli O127:H6 str.
E2348/69]
gi|221361439|emb|CAX18592.1| Type III secretion system, LEE associated [Escherichia coli]
gi|221361496|emb|CAX18667.1| Type III secretion system, LEE associated [Escherichia coli]
gi|221361557|emb|CAX18747.1| Type III secretion system, LEE associated [Escherichia coli]
gi|254595057|gb|ACT74418.1| LEE-encoded type III secretion system factor [Escherichia coli
O157:H7 str. TW14359]
gi|255348330|gb|ACU09472.1| hypothetical protein [Escherichia coli]
gi|257766056|dbj|BAI37551.1| T3SS structure protein EscS [Escherichia coli O111:H- str. 11128]
gi|320639372|gb|EFX08987.1| EscS [Escherichia coli O157:H7 str. G5101]
gi|320644816|gb|EFX13852.1| EscS [Escherichia coli O157:H- str. 493-89]
gi|320650080|gb|EFX18576.1| EscS [Escherichia coli O157:H- str. H 2687]
gi|320655427|gb|EFX23362.1| EscS [Escherichia coli O55:H7 str. 3256-97 TW 07815]
gi|320661053|gb|EFX28489.1| EscS [Escherichia coli O55:H7 str. USDA 5905]
gi|320666179|gb|EFX33185.1| EscS [Escherichia coli O157:H7 str. LSU-61]
gi|323178896|gb|EFZ64472.1| type III secretion protein, HrpO family protein [Escherichia coli
1180]
Length = 89
Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 51/85 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ +++ W I S P + +A +GI+I+ +QA+TQ+Q+ TL F+ KIIAVF
Sbjct: 1 MDTGYFVQLCVQTFWIIFILSLPTVIAASVIGIIISLVQAITQLQDQTLPFLLKIIAVFA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
TL ++ ++G I +F +++ I
Sbjct: 61 TLALTYHWMGTTIINFSSIIFEMIP 85
>gi|83647845|ref|YP_436280.1| flagellar biosynthesis protein FliQ [Hahella chejuensis KCTC
2396]
gi|83635888|gb|ABC31855.1| flagellar biosynthetic protein FliQ [Hahella chejuensis KCTC
2396]
Length = 89
Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 53/86 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M VL+I R A+W I++ ++ ++ +G++++ QA TQI E TL+F+P+++ I
Sbjct: 1 MTPEVVLDIFREALWLIVTLVTLIVAPSLVVGLIVSIFQAATQINEQTLSFLPRLLVTLI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
+II+ P++ Q+ + ++++ I
Sbjct: 61 VIIIAGPWMLTQLMEYTDMLITSIPD 86
>gi|288958050|ref|YP_003448391.1| flagellar biosynthetic protein [Azospirillum sp. B510]
gi|288910358|dbj|BAI71847.1| flagellar biosynthetic protein [Azospirillum sp. B510]
Length = 119
Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 48/79 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNE +V+EI R ++ T++ P+L M +G +I+ QA+TQI E TL VPK++ VF
Sbjct: 1 MNETEVIEICRTSIVTLVIVCGPILVIMMAVGTVISIFQAVTQISEQTLAMVPKVLLVFG 60
Query: 61 TLIISAPFIGGQISSFVTL 79
I+ PF+ +++ F
Sbjct: 61 LSILLMPFMLSKLTEFFEH 79
>gi|322833207|ref|YP_004213234.1| flagellar biosynthetic protein FliQ [Rahnella sp. Y9602]
gi|321168408|gb|ADW74107.1| flagellar biosynthetic protein FliQ [Rahnella sp. Y9602]
Length = 89
Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 53/85 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + AM L+ +AP+L +A+ G++++ LQA TQI E TL+F+PKI+AV
Sbjct: 1 MTPESVMALGNEAMKVALAVAAPLLLAALVTGLIVSLLQAATQINEQTLSFIPKILAVVA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
T++I+ P++ + ++ + + +
Sbjct: 61 TIVIAGPWMLNLLLDYMRTLFTNLP 85
>gi|296103569|ref|YP_003613715.1| flagellar biosynthesis protein FliQ [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295058028|gb|ADF62766.1| flagellar biosynthesis protein FliQ [Enterobacter cloacae subsp.
cloacae ATCC 13047]
Length = 89
Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 54/85 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + AM ++ +AP+L A+ G++I+ LQA TQI E+TL+F+PKIIAVF+
Sbjct: 1 MTPESVMMMGTEAMKIAIAVAAPLLLVALVTGLIISILQAATQINEMTLSFIPKIIAVFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
+I++ P++ + ++ + + +
Sbjct: 61 AIIVAGPWMLNLLLDYMRNLFTNLP 85
>gi|156974014|ref|YP_001444921.1| Type III secretory pathway, component EscS [Vibrio harveyi ATCC
BAA-1116]
gi|41834185|gb|AAS13323.1| VscS [Vibrio harveyi]
gi|156525608|gb|ABU70694.1| hypothetical protein VIBHAR_01725 [Vibrio harveyi ATCC BAA-1116]
Length = 88
Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 35/85 (41%), Positives = 54/85 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN A+++ A+ +L S P + A +G L++ +QALTQ+QE TL FV K+IAV I
Sbjct: 1 MNPAEIIHFTTQALTLVLFLSLPPILVAALVGTLVSLVQALTQVQEQTLGFVVKLIAVII 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
TL ++ ++G ++ SF TL L +I
Sbjct: 61 TLFVTTQWLGAELHSFATLTLGKIP 85
>gi|28898447|ref|NP_798052.1| translocation protein in type III secretion [Vibrio
parahaemolyticus RIMD 2210633]
gi|153836228|ref|ZP_01988895.1| translocation protein in type III secretion [Vibrio
parahaemolyticus AQ3810]
gi|260365109|ref|ZP_05777680.1| translocation protein in type III secretion [Vibrio
parahaemolyticus K5030]
gi|260876608|ref|ZP_05888963.1| translocation protein in type III secretion [Vibrio
parahaemolyticus AN-5034]
gi|260895031|ref|ZP_05903527.1| translocation protein in type III secretion [Vibrio
parahaemolyticus Peru-466]
gi|260900958|ref|ZP_05909353.1| translocation protein in type III secretion [Vibrio
parahaemolyticus AQ4037]
gi|28806664|dbj|BAC59936.1| translocation protein in type III secretion [Vibrio
parahaemolyticus RIMD 2210633]
gi|149750503|gb|EDM61248.1| translocation protein in type III secretion [Vibrio
parahaemolyticus AQ3810]
gi|308086015|gb|EFO35710.1| translocation protein in type III secretion [Vibrio
parahaemolyticus Peru-466]
gi|308093602|gb|EFO43297.1| translocation protein in type III secretion [Vibrio
parahaemolyticus AN-5034]
gi|308110801|gb|EFO48341.1| translocation protein in type III secretion [Vibrio
parahaemolyticus AQ4037]
gi|308111602|gb|EFO49142.1| translocation protein in type III secretion [Vibrio
parahaemolyticus K5030]
gi|328468940|gb|EGF39900.1| translocation protein in type III secretion [Vibrio
parahaemolyticus 10329]
Length = 88
Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/85 (40%), Positives = 54/85 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN A+++ A+ +L S P + A +G L++ +QALTQ+QE TL FV K+IAV I
Sbjct: 1 MNPAEIIHFTTQALTLVLFLSLPPILVAALVGTLVSLIQALTQVQEQTLGFVVKLIAVII 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
TL I+ ++G ++ +F +L L +I
Sbjct: 61 TLFITTQWLGAELHAFASLALDKIP 85
>gi|269963169|ref|ZP_06177504.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269832133|gb|EEZ86257.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 88
Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/85 (40%), Positives = 54/85 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN A+++ A+ +L S P + A +G L++ +QALTQ+QE TL FV K+IAV I
Sbjct: 1 MNPAEIIHFTTQALTLVLFLSLPPIVVAALVGTLVSLIQALTQVQEQTLGFVVKLIAVII 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
TL ++ ++G ++ +F TL L +I
Sbjct: 61 TLFVTTQWLGAELHAFATLALDKIP 85
>gi|218133680|ref|ZP_03462484.1| hypothetical protein BACPEC_01549 [Bacteroides pectinophilus ATCC
43243]
gi|217991055|gb|EEC57061.1| hypothetical protein BACPEC_01549 [Bacteroides pectinophilus ATCC
43243]
Length = 93
Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 35/88 (39%), Positives = 58/88 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M E D++ IAR +W I+ +S PVL +M +G++I+ +Q +T IQE TLTFVPK++++FI
Sbjct: 5 MTEQDIITIARQTIWIIVQTSMPVLVISMIVGLVISLIQTITSIQEQTLTFVPKMLSIFI 64
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
TL+I ++ +I F+T + +
Sbjct: 65 TLMILGSWMINRIVEFITQLWGNFGQYI 92
>gi|104782807|ref|YP_609305.1| flagellar biosynthesis protein FliQ [Pseudomonas entomophila L48]
gi|95111794|emb|CAK16518.1| flagellar biosynthetic protein FliQ [Pseudomonas entomophila L48]
Length = 89
Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 50/88 (56%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +++ R A+W A ++ ++ +G+++A QA TQI E TL+F+P+++ + I
Sbjct: 1 MTPEVAVDLFRNALWLTTLMVAVLVVPSLLVGLVVAMFQAATQINEQTLSFLPRLLVMLI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
TLI++ P++ + + + + I +
Sbjct: 61 TLIVAGPWLVQKFMEYFIGLYTSIPQLI 88
>gi|284041538|ref|YP_003391878.1| flagellar biosynthetic protein FliQ [Conexibacter woesei DSM
14684]
gi|283945759|gb|ADB48503.1| flagellar biosynthetic protein FliQ [Conexibacter woesei DSM
14684]
Length = 91
Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 54/88 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M++ V+ ++ A+ + P+L + +G++++ QA+TQIQE +L+F+PKIIA +
Sbjct: 1 MDQDTVMNLSTQALDLAIKIGGPLLLVGLVVGLVVSVFQAITQIQEQSLSFIPKIIATAV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L+++ P++ Q+ ++ + I + +
Sbjct: 61 VLVVAGPWMLNQLIAYTENLYRSIPTLV 88
>gi|209884538|ref|YP_002288395.1| flagellar biosynthetic protein FliQ [Oligotropha carboxidovorans
OM5]
gi|209872734|gb|ACI92530.1| flagellar biosynthetic protein FliQ [Oligotropha carboxidovorans
OM5]
Length = 87
Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 42/87 (48%), Positives = 61/87 (70%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN +VLE+AR A+WT++ +APVL + +G+ I+ +QALTQIQE TL FVPKI+AVF+
Sbjct: 1 MNGLEVLEVARDAIWTMVLVAAPVLLVGLIVGVAISLVQALTQIQEQTLVFVPKILAVFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
TL+I+ PF+ + + + SRI
Sbjct: 61 TLLIALPFMADAMHGQMMRISSRIIGG 87
>gi|238899256|ref|YP_002924939.1| type III secretion system apparatus protein [Candidatus
Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
gi|75906099|gb|ABA29441.1| putative type III secretion system protein [Candidatus
Hamiltonella defensa]
gi|229467017|gb|ACQ68791.1| type III secretion system apparatus protein [Candidatus
Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
Length = 89
Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 54/86 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ A ++++ +W +L S PV+ A +G++++ QALTQIQ+ TL F+ K++AV +
Sbjct: 1 MSNAIIIQLTTQVLWIVLILSMPVVVVASLVGLMVSLFQALTQIQDQTLQFLIKLLAVCL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
L++S ++G + ++ V +I +
Sbjct: 61 CLLMSYHWMGSTMLNYTHQVFLQIGN 86
>gi|326796454|ref|YP_004314274.1| flagellar biosynthetic protein FliQ [Marinomonas mediterranea
MMB-1]
gi|326547218|gb|ADZ92438.1| flagellar biosynthetic protein FliQ [Marinomonas mediterranea
MMB-1]
Length = 89
Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 48/85 (56%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ VL++ + I+ A V+ ++ +G++++ QA TQI E TL+F+P++I +
Sbjct: 1 MDPQVVLDLYGQGFYLIVLLVAAVMVPSLAVGLMVSIFQAATQINEQTLSFLPRLIVTIL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
T++ P++ +++ F + I
Sbjct: 61 TIMYLGPWLLTKLTDFTNELFINIP 85
>gi|193062068|ref|ZP_03043164.1| EscS protein [Escherichia coli E22]
gi|194426251|ref|ZP_03058806.1| EscS protein [Escherichia coli B171]
gi|260845711|ref|YP_003223489.1| T3SS structure protein EscS [Escherichia coli O103:H2 str. 12009]
gi|260858248|ref|YP_003232139.1| T3SS structure protein EscS [Escherichia coli O26:H11 str. 11368]
gi|13447702|gb|AAK26701.1|AF200363_9 EscS [Escherichia coli]
gi|18034506|gb|AAL57528.1|AF453441_12 EscS [Escherichia coli]
gi|17384636|emb|CAC81848.1| EscS protein [Escherichia coli]
gi|192932288|gb|EDV84886.1| EscS protein [Escherichia coli E22]
gi|194415559|gb|EDX31826.1| EscS protein [Escherichia coli B171]
gi|195183212|dbj|BAG66757.1| T3SS structure protein EscS [Escherichia coli O111:H-]
gi|254692326|emb|CAR47967.1| EscS protein [Escherichia coli]
gi|254692394|emb|CAR48037.1| EscS protein [Escherichia coli]
gi|257756897|dbj|BAI28399.1| T3SS structure protein EscS [Escherichia coli O26:H11 str. 11368]
gi|257760858|dbj|BAI32355.1| T3SS structure protein EscS [Escherichia coli O103:H2 str. 12009]
gi|323163023|gb|EFZ48856.1| type III secretion protein, HrpO family protein [Escherichia coli
E128010]
Length = 89
Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 51/85 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +++ +W I S P + +A +GI+I+ +QA+TQ+Q+ TL F+ KIIAVF
Sbjct: 1 METGYFVQLCVQTLWIIFILSLPTVIAASVVGIIISLVQAITQLQDQTLPFLLKIIAVFA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
TL ++ ++G I +F +++ I
Sbjct: 61 TLALTYHWMGTTIINFSSIIFEMIP 85
>gi|256830494|ref|YP_003159222.1| flagellar biosynthetic protein FliQ [Desulfomicrobium baculatum
DSM 4028]
gi|256579670|gb|ACU90806.1| flagellar biosynthetic protein FliQ [Desulfomicrobium baculatum
DSM 4028]
Length = 89
Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 53/88 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ AR ++ L + P+L + +G+ ++ LQA TQIQE+TLTFVPKIIAVF+
Sbjct: 1 MTPEFVIGFARQSIELTLIIALPMLGVGLGVGVFVSILQAATQIQEMTLTFVPKIIAVFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L+IS P+I ++ ++ + +
Sbjct: 61 ALLISFPWIMDKMITYTQEIFLNFPQYI 88
>gi|294013058|ref|YP_003546518.1| flagellar biosynthesis pathway component FliQ [Sphingobium
japonicum UT26S]
gi|292676388|dbj|BAI97906.1| flagellar biosynthesis pathway component FliQ [Sphingobium
japonicum UT26S]
Length = 90
Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 46/87 (52%)
Query: 2 NEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFIT 61
N + +A+ A+W ++AP+L A+ G++I +QA T I E TL F+PKII V
Sbjct: 3 NADFFMGLAQQALWITALAAAPILIPALVAGVVIGMVQAATSINEQTLAFIPKIIVVGAM 62
Query: 62 LIISAPFIGGQISSFVTLVLSRIQSSL 88
L++ I I+ F + RI L
Sbjct: 63 LVLFGGSIMVLIADFTREIFERIPDLL 89
>gi|220925378|ref|YP_002500680.1| flagellar biosynthetic protein FliQ [Methylobacterium nodulans
ORS 2060]
gi|219949985|gb|ACL60377.1| flagellar biosynthetic protein FliQ [Methylobacterium nodulans
ORS 2060]
Length = 88
Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/87 (39%), Positives = 57/87 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +L+IAR + T L P++ A+ +G+ ++ LQALTQIQE TL +VPKI+AVF
Sbjct: 1 MTGLAILDIARDGIVTFLKVGGPLMVVALIVGLAVSLLQALTQIQEQTLIYVPKIVAVFA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
+++ PF+G ++ ++T + +RI +
Sbjct: 61 AMLLMLPFMGDAMAGYMTRIAARIAAG 87
>gi|259908769|ref|YP_002649125.1| Flagellar protein [Erwinia pyrifoliae Ep1/96]
gi|224964391|emb|CAX55900.1| Flagellar protein [Erwinia pyrifoliae Ep1/96]
gi|283478745|emb|CAY74661.1| Flagellar biosynthetic protein FliQ [Erwinia pyrifoliae DSM
12163]
gi|310767333|gb|ADP12283.1| Flagellar protein [Erwinia sp. Ejp617]
Length = 89
Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 53/85 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ I AM L+ +AP+L +A+ G+LI+ LQA TQI E TL+F+PKI+AV
Sbjct: 1 MTPESVMVIGHDAMQVALALAAPLLLAALVSGLLISLLQAATQINEQTLSFIPKILAVVT 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
T+I++ P++ + ++ + + +
Sbjct: 61 TMIVAGPWMLNLLLDYMRNLFNNLP 85
>gi|150390468|ref|YP_001320517.1| flagellar biosynthetic protein FliQ [Alkaliphilus metalliredigens
QYMF]
gi|149950330|gb|ABR48858.1| flagellar biosynthetic protein FliQ [Alkaliphilus metalliredigens
QYMF]
Length = 89
Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 35/88 (39%), Positives = 58/88 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+EA V+E+ + M+TIL+ SAP+L + +G+ ++ QA TQIQE TL F+PKIIAV
Sbjct: 1 MSEAMVIELGQQTMFTILTMSAPMLGFGLLVGLAVSIFQATTQIQEATLAFIPKIIAVLG 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+++I P++ I +F + + + S +
Sbjct: 61 SVVIFGPWLLSIIINFTLRLFTNMNSFI 88
>gi|56964018|ref|YP_175749.1| flagellar biosynthesis protein FliQ [Bacillus clausii KSM-K16]
gi|56910261|dbj|BAD64788.1| flagellar biosynthetic protein FliQ [Bacillus clausii KSM-K16]
Length = 89
Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 51/84 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ V +A++ +WT+L + P+L A+ LG++++ QA TQIQE TL F+PKI V +
Sbjct: 1 MSLEMVTHLAQSGVWTVLIVAGPLLVVALALGLIVSIFQATTQIQEQTLAFIPKIAGVLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
L+ P++ Q++ + + +
Sbjct: 61 ALVFFGPWMLSQLTEMAYSIYNNL 84
>gi|292487981|ref|YP_003530858.1| flagellar biosynthetic protein FliQ [Erwinia amylovora CFBP1430]
gi|292899201|ref|YP_003538570.1| flagellar biosynthetic protein FliQ [Erwinia amylovora ATCC
49946]
gi|291199049|emb|CBJ46160.1| flagellar biosynthetic protein FliQ [Erwinia amylovora ATCC
49946]
gi|291553405|emb|CBA20450.1| Flagellar biosynthetic protein FliQ [Erwinia amylovora CFBP1430]
gi|312172106|emb|CBX80363.1| Flagellar biosynthetic protein FliQ [Erwinia amylovora ATCC
BAA-2158]
Length = 89
Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 53/85 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ I AM L+ +AP+L +A+ G+LI+ LQA TQI E TL+F+PKI+AV
Sbjct: 1 MTPESVMVIGHDAMQVALALAAPLLLAALVSGLLISLLQAATQINEQTLSFIPKILAVVT 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
T++++ P++ + ++ + + +
Sbjct: 61 TMVVAGPWMLNLVLDYMRNLFNNLP 85
>gi|329298604|ref|ZP_08255940.1| flagellar biosynthetic protein FliQ [Plautia stali symbiont]
Length = 89
Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 51/85 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + + AM L +AP+L AM G+LI+ LQA TQI E TL+F+PKI+AV
Sbjct: 1 MTPESVMVMGQEAMRIALMMAAPLLLVAMVSGLLISILQAATQINEQTLSFIPKILAVAA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
T +++ P++ + ++ + S +
Sbjct: 61 TAVVAGPWMLNLMLDYIRTLFSNLP 85
>gi|307293815|ref|ZP_07573659.1| flagellar biosynthetic protein FliQ [Sphingobium chlorophenolicum
L-1]
gi|306879966|gb|EFN11183.1| flagellar biosynthetic protein FliQ [Sphingobium chlorophenolicum
L-1]
Length = 90
Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/87 (35%), Positives = 46/87 (52%)
Query: 2 NEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFIT 61
N + +A+ A+W ++AP+L A+ G+LI +QA T I E TL F+PKII V
Sbjct: 3 NADFFMGLAQQALWITALAAAPILIPALVAGVLIGMVQAATSINEQTLAFIPKIIVVGAM 62
Query: 62 LIISAPFIGGQISSFVTLVLSRIQSSL 88
L++ I I+ F + RI L
Sbjct: 63 LVLFGGSIMVLIADFTREIFERIPDLL 89
>gi|291280090|ref|YP_003496925.1| flagellar biosynthetic protein FliQ [Deferribacter desulfuricans
SSM1]
gi|290754792|dbj|BAI81169.1| flagellar biosynthetic protein FliQ [Deferribacter desulfuricans
SSM1]
Length = 91
Score = 62.2 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 53/88 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+EI + + +AP+L + +G+LI+ QA+TQIQE+TLTF+PKI+AV +
Sbjct: 1 MTADFVIEITTKTLELTMIIAAPMLLFGLIVGLLISIFQAVTQIQEMTLTFIPKIVAVVV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
LII P+I ++ +F + I +
Sbjct: 61 ALIIFFPWILDKLVAFTFNLFQNIPIYI 88
>gi|297617155|ref|YP_003702314.1| flagellar biosynthetic protein FliQ [Syntrophothermus lipocalidus
DSM 12680]
gi|297144992|gb|ADI01749.1| flagellar biosynthetic protein FliQ [Syntrophothermus lipocalidus
DSM 12680]
Length = 91
Score = 62.2 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 34/88 (38%), Positives = 56/88 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + VL +A+ A++ L +AP+L ++ +G++I+ LQA TQIQE TLTFVPKII V +
Sbjct: 1 MYQDVVLGLAKEAVYATLLVAAPILLGSLLIGLVISILQATTQIQEQTLTFVPKIIVVLV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+I+ P++ + +F +L I +
Sbjct: 61 VIIVFGPWMLNTMVAFANNLLVNIPQFI 88
>gi|304414277|ref|ZP_07395645.1| type III secretion system apparatus protein [Candidatus Regiella
insecticola LSR1]
gi|304283491|gb|EFL91887.1| type III secretion system apparatus protein [Candidatus Regiella
insecticola LSR1]
Length = 89
Score = 62.2 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 34/86 (39%), Positives = 57/86 (66%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+EA V+++A +W +L S PV+ A +G++I+ QALTQIQ+ TL F+ K++AV I
Sbjct: 1 MSEAIVVQLATQVLWIVLMLSMPVVVVASAVGLIISLFQALTQIQDQTLQFLIKLLAVSI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
TL++S ++G + ++ V +I S
Sbjct: 61 TLLVSYHWMGSTLLNYTQQVFLQIGS 86
>gi|310659026|ref|YP_003936747.1| flagellar biosynthesis protein [Clostridium sticklandii DSM 519]
gi|308825804|emb|CBH21842.1| flagellar biosynthesis protein [Clostridium sticklandii]
Length = 89
Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 53/88 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ V+ I + ++ +L SAP+L + +G++++ QA TQIQE TL FVPKI+AV +
Sbjct: 1 MDMDLVVGIMQQSLTMVLLLSAPMLIIGLLVGLIVSVFQATTQIQEATLAFVPKIVAVML 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
++++ P++ + +F + I +
Sbjct: 61 SMVVFGPWMMSSMVNFTQNLFENIDKFI 88
>gi|294084390|ref|YP_003551148.1| flagellar biosynthetic protein FliQ [Candidatus Puniceispirillum
marinum IMCC1322]
gi|292663963|gb|ADE39064.1| flagellar biosynthetic protein FliQ [Candidatus Puniceispirillum
marinum IMCC1322]
Length = 88
Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 50/86 (58%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ +E R A W I+ ++ P+L A+ +G+LI QA T I E TL+FVPK++ V +
Sbjct: 1 MDFDSNVEFLRIAFWQIIIAAGPLLGVALAIGLLIGIFQAATSINEQTLSFVPKLVIVML 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
T + + F+ Q+S + + +I +
Sbjct: 61 TFGLVSSFMLAQLSDYFAFIFDQIAT 86
>gi|238782831|ref|ZP_04626860.1| Flagellar biosynthetic protein fliQ [Yersinia bercovieri ATCC
43970]
gi|238716254|gb|EEQ08237.1| Flagellar biosynthetic protein fliQ [Yersinia bercovieri ATCC
43970]
Length = 89
Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 49/85 (57%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + A+ L +AP+LF+A+F G++++ LQA TQI E+TL+F+PKI+ +
Sbjct: 1 MTPESVMAMGFQAIKVGLMIAAPLLFAALFTGLIVSVLQASTQINEMTLSFIPKILVIIA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
II P++ + + S +
Sbjct: 61 VGIILGPWMLSVFLDYTRTLYSNLP 85
>gi|296135632|ref|YP_003642874.1| flagellar biosynthetic protein FliQ [Thiomonas intermedia K12]
gi|295795754|gb|ADG30544.1| flagellar biosynthetic protein FliQ [Thiomonas intermedia K12]
Length = 91
Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 51/88 (57%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + IA+ A+W + P+L A+ +G++++ +QA TQ+ E+TL+FVPK++A+ +
Sbjct: 1 MTPETITTIAQQALWVTFLVALPLLGVALVVGLVVSLIQAATQLNEMTLSFVPKVLAMGL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+I+ P++ + F + I L
Sbjct: 61 AGVIAGPWMLHVMMDFTIRLFQSIPHLL 88
>gi|37525860|ref|NP_929204.1| flagellar biosynthesis protein FliQ [Photorhabdus luminescens
subsp. laumondii TTO1]
gi|36785289|emb|CAE14230.1| flagellar biosynthetic protein FliQ [Photorhabdus luminescens
subsp. laumondii TTO1]
Length = 89
Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 54/85 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + AM L+ +AP+L +A+ G++++ LQA TQ+ E+TL+F+PKI+AVF+
Sbjct: 1 MTPESVMALGTEAMKVALALAAPLLLAALLCGLIVSLLQAATQVNEMTLSFIPKILAVFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
T +I+ P++ ++ + S I
Sbjct: 61 TTVIAGPWMLNLFLDYMRELYSSIP 85
>gi|320107034|ref|YP_004182624.1| export protein FliQ family 3 [Terriglobus saanensis SP1PR4]
gi|319925555|gb|ADV82630.1| export protein FliQ family 3 [Terriglobus saanensis SP1PR4]
Length = 89
Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 49/88 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN V EIAR + + SAPVL ++ + ++++ LQ LT IQ+ TLT VP+++ VF+
Sbjct: 1 MNPDQVAEIARHLLMEAMLLSAPVLIASCLVSVILSLLQTLTSIQDQTLTAVPRLLVVFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
++ P+ ++ + + + L
Sbjct: 61 AGTLTMPWFLRRLVLYTVHLWTDFHRYL 88
>gi|146341892|ref|YP_001206940.1| flagellar biosynthesis protein FliQ [Bradyrhizobium sp. ORS278]
gi|146194698|emb|CAL78723.1| Flagellar biosynthetic protein fliQ [Bradyrhizobium sp. ORS278]
Length = 87
Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 37/87 (42%), Positives = 59/87 (67%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M A+ L++AR A+WTI+ S+P++ + +G++++ QALTQIQE TL FVPKIIA+F+
Sbjct: 1 MTGAETLDVARDAIWTIVIVSSPLMVVGLVVGVVVSLFQALTQIQEQTLVFVPKIIAIFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
TL++ PF+ + + + SRI
Sbjct: 61 TLLLGLPFMADALHQHMMRISSRIIGG 87
>gi|148256777|ref|YP_001241362.1| flagellar biosynthesis protein FliQ [Bradyrhizobium sp. BTAi1]
gi|146408950|gb|ABQ37456.1| Flagellar biosynthetic protein fliQ [Bradyrhizobium sp. BTAi1]
Length = 87
Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 38/87 (43%), Positives = 61/87 (70%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M A+ L++AR A+WTI+ S+P++ + +G++++ QALTQIQE TL FVPKIIA+F+
Sbjct: 1 MTGAETLDVARDAIWTIVLVSSPLMVVGLVVGVVVSLFQALTQIQEQTLVFVPKIIAIFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
TL+++ PF+ + S + + SRI
Sbjct: 61 TLLLALPFMADALHSHMMRISSRIIGG 87
>gi|15887925|ref|NP_353606.1| flagellar biosynthesis protein FliQ [Agrobacterium tumefaciens
str. C58]
gi|15155521|gb|AAK86391.1| flagellar biosynthetic protein [Agrobacterium tumefaciens str.
C58]
Length = 88
Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 50/88 (56%), Positives = 68/88 (77%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEAD L+I +AA+WT+L ++ P + +AM +G+ IAF+QALTQ+QE+TLTFVPKI+ + I
Sbjct: 1 MNEADALDIMQAAVWTVLVAAGPAVLAAMIVGVAIAFIQALTQVQEMTLTFVPKIVTIMI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L ++APF+G QI F LV SRIQS
Sbjct: 61 VLGVAAPFVGAQIVLFSNLVFSRIQSGF 88
>gi|294339801|emb|CAZ88164.1| Flagellar biosynthetic protein FliQ [Thiomonas sp. 3As]
Length = 91
Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 51/88 (57%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + IA+ A+W + P+L A+ +G++++ +QA TQ+ E+TL+FVPK++A+ +
Sbjct: 1 MTPEAITTIAQQALWVTFLVALPLLGVALVVGLVVSLIQAATQLNEMTLSFVPKVLAMGL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+I+ P++ + F + I L
Sbjct: 61 AGVIAGPWMLHVMMDFTIRLFQSIPHLL 88
>gi|148380605|ref|YP_001255146.1| flagellar biosynthesis protein FliQ [Clostridium botulinum A str.
ATCC 3502]
gi|153930978|ref|YP_001384892.1| flagellar biosynthesis protein FliQ [Clostridium botulinum A str.
ATCC 19397]
gi|153937262|ref|YP_001388361.1| flagellar biosynthesis protein FliQ [Clostridium botulinum A str.
Hall]
gi|153940246|ref|YP_001391948.1| flagellar biosynthesis protein FliQ [Clostridium botulinum F str.
Langeland]
gi|168180928|ref|ZP_02615592.1| flagellar biosynthesis protein FliQ [Clostridium botulinum NCTC
2916]
gi|168182730|ref|ZP_02617394.1| flagellar biosynthesis protein FliQ [Clostridium botulinum Bf]
gi|226950060|ref|YP_002805151.1| flagellar biosynthesis protein FliQ [Clostridium botulinum A2
str. Kyoto]
gi|237796087|ref|YP_002863639.1| flagellar biosynthesis protein FliQ [Clostridium botulinum Ba4
str. 657]
gi|148290089|emb|CAL84208.1| flagellar biosynthetic protein [Clostridium botulinum A str. ATCC
3502]
gi|152927022|gb|ABS32522.1| flagellar biosynthesis protein FliQ [Clostridium botulinum A str.
ATCC 19397]
gi|152933176|gb|ABS38675.1| flagellar biosynthesis protein FliQ [Clostridium botulinum A str.
Hall]
gi|152936142|gb|ABS41640.1| flagellar biosynthesis protein FliQ [Clostridium botulinum F str.
Langeland]
gi|182668265|gb|EDT80244.1| flagellar biosynthesis protein FliQ [Clostridium botulinum NCTC
2916]
gi|182674208|gb|EDT86169.1| flagellar biosynthesis protein FliQ [Clostridium botulinum Bf]
gi|226842552|gb|ACO85218.1| flagellar biosynthesis protein FliQ [Clostridium botulinum A2
str. Kyoto]
gi|229263883|gb|ACQ54916.1| flagellar biosynthesis protein FliQ [Clostridium botulinum Ba4
str. 657]
gi|295319966|gb|ADG00344.1| flagellar biosynthesis protein FliQ [Clostridium botulinum F str.
230613]
Length = 89
Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 33/84 (39%), Positives = 55/84 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E V+ I + A+ T L SAP+L ++ +G++I+ QA TQIQE TLTFVPK+IAV +
Sbjct: 1 MSENMVMGIIKDAIQTGLLISAPILTISILVGLIISIFQATTQIQEQTLTFVPKLIAVAV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
+++ ++ Q+ +F + + I
Sbjct: 61 VGLLTGSWMLHQLLAFTERIFAMI 84
>gi|299131773|ref|ZP_07024968.1| flagellar biosynthetic protein FliQ [Afipia sp. 1NLS2]
gi|298591910|gb|EFI52110.1| flagellar biosynthetic protein FliQ [Afipia sp. 1NLS2]
Length = 87
Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 43/87 (49%), Positives = 61/87 (70%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +VLE+AR ++WTI+ SAPVL + +G+ I+ +QALTQIQE TL FVPKI+AVFI
Sbjct: 1 MTGPEVLEVARDSIWTIVLVSAPVLLVGLVVGVAISLVQALTQIQEQTLVFVPKILAVFI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
TL+++ PF+ + S + + SRI
Sbjct: 61 TLLVALPFMADAMHSHMMRISSRIIGG 87
>gi|114570482|ref|YP_757162.1| flagellar biosynthesis protein FliQ [Maricaulis maris MCS10]
gi|114340944|gb|ABI66224.1| flagellar biosynthetic protein FliQ [Maricaulis maris MCS10]
Length = 87
Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 37/86 (43%), Positives = 61/86 (70%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +VL+ AR A+W +L+ +AP++ + +G+ IA QALTQ+QE+TL FVPKIIA+F+
Sbjct: 1 MTGPEVLDFAREAIWLMLAMAAPIMLVGLAVGVTIALFQALTQVQEMTLVFVPKIIAIFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
L++ P +GG ++ F+ ++ RI +
Sbjct: 61 ALLLFLPLMGGLMAGFMAMIFDRIAN 86
>gi|302384126|ref|YP_003819949.1| flagellar biosynthetic protein FliQ [Brevundimonas subvibrioides
ATCC 15264]
gi|302194754|gb|ADL02326.1| flagellar biosynthetic protein FliQ [Brevundimonas subvibrioides
ATCC 15264]
Length = 87
Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 36/84 (42%), Positives = 57/84 (67%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ A+VL++ R A+W + APVL + +G+ I QALTQIQE TL + PKIIA+F+
Sbjct: 1 MSGAEVLDVGRDAIWLTVQLCAPVLIVGLVVGVGIGLFQALTQIQEQTLVYAPKIIAIFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
+L++ P +GG + +F+ + +RI
Sbjct: 61 SLLLFLPLMGGLLGAFMRTIAARI 84
>gi|116328497|ref|YP_798217.1| endoflagellar biosynthesis pathway protein [Leptospira
borgpetersenii serovar Hardjo-bovis L550]
gi|116331227|ref|YP_800945.1| endoflagellar biosynthesis pathway protein [Leptospira
borgpetersenii serovar Hardjo-bovis JB197]
gi|116121241|gb|ABJ79284.1| Endoflagellar biosynthesis pathway protein [Leptospira
borgpetersenii serovar Hardjo-bovis L550]
gi|116124916|gb|ABJ76187.1| Endoflagellar biosynthesis pathway protein [Leptospira
borgpetersenii serovar Hardjo-bovis JB197]
Length = 87
Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 52/85 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M E D + + R +++ L S+P+L +A+ +G++I LQ T IQE T+ FVPK+ AVF+
Sbjct: 1 MTELDAMTLIRDSLYITLKISSPILLTALVVGLIIGILQTTTSIQEPTIAFVPKLAAVFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
++I + ++ ++ + + I+
Sbjct: 61 VIVIFSSWMIQTMTDYTRNLFLMIE 85
>gi|192359213|ref|YP_001982205.1| flagellar biosynthetic protein FliQ [Cellvibrio japonicus
Ueda107]
gi|190685378|gb|ACE83056.1| flagellar biosynthetic protein FliQ [Cellvibrio japonicus
Ueda107]
Length = 89
Score = 61.4 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 45/88 (51%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V++I A W + ++ + +G++++ QA TQI E TL+F+P+++
Sbjct: 1 MTPEVVMDIFADAFWLTILMLTVIVGPGLIVGLVVSMFQAATQINEQTLSFLPRLLVTIA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
TL+++ P++ + + S + +
Sbjct: 61 TLMVAGPWLLTRFMDLFNRLYSAVPGLI 88
>gi|254292630|ref|YP_003058653.1| flagellar biosynthesis protein FliQ [Hirschia baltica ATCC 49814]
gi|254041161|gb|ACT57956.1| flagellar biosynthetic protein FliQ [Hirschia baltica ATCC 49814]
Length = 87
Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 35/87 (40%), Positives = 61/87 (70%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M A+VL++ R A+W ++ + PV+ + + +G++IA +QALTQ+QE+TL FVPKI+A+F+
Sbjct: 1 MTGAEVLDLGRDALWATVAMATPVMVAGLVVGVVIALMQALTQVQEMTLVFVPKILAIFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
TL++ P +G ++ F + +RI
Sbjct: 61 TLLLFLPMMGATLAGFSDSIFARIAGY 87
>gi|224826621|ref|ZP_03699722.1| flagellar biosynthetic protein FliQ [Lutiella nitroferrum 2002]
gi|224601222|gb|EEG07404.1| flagellar biosynthetic protein FliQ [Lutiella nitroferrum 2002]
Length = 89
Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 60/88 (68%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ V+ + + A++ ++ +APVL ++ +G+L++ LQA TQI E+TLTF+PK++A+F+
Sbjct: 1 MSPELVINLVQNALYVLIIVAAPVLLVSLLVGLLVSVLQAATQINEMTLTFIPKLLALFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
TL+++ P++ + + + I +++
Sbjct: 61 TLVLAGPWMINTLVDYTVRLFQSIPNAI 88
>gi|312884594|ref|ZP_07744298.1| HrpO family type III secretion protein [Vibrio caribbenthicus
ATCC BAA-2122]
gi|309367906|gb|EFP95454.1| HrpO family type III secretion protein [Vibrio caribbenthicus
ATCC BAA-2122]
Length = 89
Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 52/84 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEA ++ +W +L S PV+ A +GI+++ QALTQIQ+ +L F+ K++AV I
Sbjct: 1 MNEAVIVHFTSELLWLVLILSLPVVVVASVVGIMVSLFQALTQIQDQSLQFLIKLVAVCI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
T+ +S ++G + ++ L +I
Sbjct: 61 TIAVSYHWMGSTLLNYAGLAFDQI 84
>gi|270262392|ref|ZP_06190663.1| flagellar biosynthesis protein FliQ [Serratia odorifera 4Rx13]
gi|270043076|gb|EFA16169.1| flagellar biosynthesis protein FliQ [Serratia odorifera 4Rx13]
Length = 89
Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 56/88 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + AM L+ SAP+L +A+ G++++ LQA TQI E+TL+F+PKI+AV
Sbjct: 1 MTPESVMALGTEAMKVALALSAPLLLAALVSGLVVSLLQAATQINEMTLSFIPKILAVVA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
T++++ P++ + ++ + S + + +
Sbjct: 61 TIVVAGPWMLNLLLDYMRTLFSNLPNLI 88
>gi|229591839|ref|YP_002873958.1| flagellar biosynthesis protein FliQ [Pseudomonas fluorescens
SBW25]
gi|229363705|emb|CAY51088.1| flagellar biosynthetic protein FliQ [Pseudomonas fluorescens
SBW25]
Length = 89
Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 49/88 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +++ R A+W A ++ ++ +G+L+A QA TQI E TL+F+P+++ + +
Sbjct: 1 MTPEVAVDLFREALWLTTVMVAVLVVPSLLVGLLVAMFQAATQINEQTLSFLPRLLVMLV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
TLI++ P++ ++ + I +
Sbjct: 61 TLIVAGPWLVQTFMEYILQLYGSIPQLI 88
>gi|170756651|ref|YP_001782264.1| flagellar biosynthesis protein FliQ [Clostridium botulinum B1
str. Okra]
gi|170758611|ref|YP_001787968.1| flagellar biosynthesis protein FliQ [Clostridium botulinum A3
str. Loch Maree]
gi|187778763|ref|ZP_02995236.1| hypothetical protein CLOSPO_02358 [Clostridium sporogenes ATCC
15579]
gi|169121863|gb|ACA45699.1| flagellar biosynthesis protein FliQ [Clostridium botulinum B1
str. Okra]
gi|169405600|gb|ACA54011.1| flagellar biosynthesis protein FliQ [Clostridium botulinum A3
str. Loch Maree]
gi|187772388|gb|EDU36190.1| hypothetical protein CLOSPO_02358 [Clostridium sporogenes ATCC
15579]
Length = 89
Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 33/84 (39%), Positives = 55/84 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E V+ I + A+ T L SAP+L ++ +G++I+ QA TQIQE TLTFVPK+IAV +
Sbjct: 1 MSENMVMGIIKDAIQTGLLVSAPILTISILVGLIISIFQATTQIQEQTLTFVPKLIAVAL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
+++ ++ Q+ +F + + I
Sbjct: 61 VGLLTGSWMLHQLLAFTERIFAMI 84
>gi|170766904|ref|ZP_02901357.1| EscS protein [Escherichia albertii TW07627]
gi|170124342|gb|EDS93273.1| EscS protein [Escherichia albertii TW07627]
Length = 89
Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 51/85 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +++ +W I S P + +A +GI+I+ +QA+TQ+Q+ TL F+ KIIAVF
Sbjct: 1 METGYFVQLCVQTLWIIFILSLPTVIAASVIGIIISLIQAITQLQDQTLPFLLKIIAVFS 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
TL ++ ++G I +F +++ I
Sbjct: 61 TLALTYHWMGTTIINFSSIIFEMIP 85
>gi|291285070|ref|YP_003501888.1| EscS [Escherichia coli O55:H7 str. CB9615]
gi|290764943|gb|ADD58904.1| EscS [Escherichia coli O55:H7 str. CB9615]
Length = 90
Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 51/85 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ +++ W I S P + +A +GI+I+ +QA+TQ+Q+ TL F+ KIIAVF
Sbjct: 2 MDTGYFVQLCVQTFWIIFILSLPTVIAASVIGIIISLVQAITQLQDQTLPFLLKIIAVFA 61
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
TL ++ ++G I +F +++ I
Sbjct: 62 TLALTYHWMGTTIINFSSIIFEMIP 86
>gi|329889295|ref|ZP_08267638.1| putative translocation protein y4yM [Brevundimonas diminuta ATCC
11568]
gi|328844596|gb|EGF94160.1| putative translocation protein y4yM [Brevundimonas diminuta ATCC
11568]
Length = 90
Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 50/88 (56%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M A +E+ A+W +L SAP + +A +G+++A +Q+ TQ+QE TL + K A+ +
Sbjct: 1 MMNAQAIELVNQALWLVLFLSAPPIIAASIVGLIVAVIQSATQLQEQTLQYTAKFFAIVL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
TL +A IGG + F + + + +
Sbjct: 61 TLFATAALIGGSLYQFSDRIFTEFPALV 88
>gi|24215310|ref|NP_712791.1| endoflagellar biosynthesis pathway protein [Leptospira
interrogans serovar Lai str. 56601]
gi|45657251|ref|YP_001337.1| flagellar biosynthetic protein fliQ [Leptospira interrogans
serovar Copenhageni str. Fiocruz L1-130]
gi|24196411|gb|AAN49809.1| endoflagellar biosynthesis pathway protein [Leptospira
interrogans serovar Lai str. 56601]
gi|45600489|gb|AAS69974.1| flagellar biosynthetic protein fliQ [Leptospira interrogans
serovar Copenhageni str. Fiocruz L1-130]
Length = 87
Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 55/85 (64%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M E DV+ + R +++ L S+P+LF+A+ +G+++ LQ T IQE T+ FVPK++A+FI
Sbjct: 1 MTELDVMTLIRDSLYITLKISSPILFTALVVGLIVGILQTTTSIQEPTIAFVPKLLAIFI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
++I + ++ ++ + + I+
Sbjct: 61 VIVIFSSWMIQTMTDYTRNLFLMIE 85
>gi|312883877|ref|ZP_07743594.1| type III secretion protein YscS [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309368335|gb|EFP95870.1| type III secretion protein YscS [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 88
Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 57/85 (67%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ A+++ + A+ +L S P + A F+G L++ +QALTQ+QE TL F K++AV +
Sbjct: 1 MSSAEIIHLTTQALTLVLFLSLPPILVATFVGTLVSLIQALTQVQEQTLGFAVKLVAVIV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
TL ++ ++G ++ SF TL+L++I
Sbjct: 61 TLFVTTQWLGAELHSFSTLILNKIP 85
>gi|325291968|ref|YP_004277832.1| flagellar biosynthesis protein FliQ [Agrobacterium sp. H13-3]
gi|325059821|gb|ADY63512.1| flagellar biosynthesis protein FliQ [Agrobacterium sp. H13-3]
Length = 88
Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 49/88 (55%), Positives = 69/88 (78%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEAD L+I +AA+WT+L ++ P + +AM +G+ IAF+QALTQ+QE+TLTFVPKI+ + I
Sbjct: 1 MNEADALDIMQAAVWTVLVAAGPAVLAAMIVGVAIAFIQALTQVQEMTLTFVPKIVTIMI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L ++APF+G QI+ F LV SR+QS
Sbjct: 61 VLGVAAPFVGAQIALFSNLVFSRVQSGF 88
>gi|322806977|emb|CBZ04547.1| flagellar biosynthesis protein FliQ [Clostridium botulinum H04402
065]
Length = 89
Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 33/84 (39%), Positives = 55/84 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E V+ I + A+ T L SAP+L ++ +G++I+ QA TQIQE TLTFVPK+IAV +
Sbjct: 1 MSENMVMGIIKDAIQTGLLISAPILTISILVGLIISIFQATTQIQEQTLTFVPKLIAVAL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
+++ ++ Q+ +F + + I
Sbjct: 61 VGLLTGSWMLHQLLAFTERIFAMI 84
>gi|330808229|ref|YP_004352691.1| flagellar biosynthetic protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327376337|gb|AEA67687.1| flagellar biosynthetic protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 89
Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 50/88 (56%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +++ R A+W + A ++ ++ +G+L+A QA TQI E TL+F+P+++ + +
Sbjct: 1 MTPEVAVDLFREALWLTTTMVAILVIPSLLVGLLVAMFQAATQINEQTLSFLPRLLVMLV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
TLI++ P++ ++ + I +
Sbjct: 61 TLIVAGPWLVQTFMEYILQLYGSIPQLI 88
>gi|170743256|ref|YP_001771911.1| flagellar biosynthetic protein FliQ [Methylobacterium sp. 4-46]
gi|168197530|gb|ACA19477.1| flagellar biosynthetic protein FliQ [Methylobacterium sp. 4-46]
Length = 88
Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 33/87 (37%), Positives = 57/87 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +L+IAR + T L + P++ A+ +G+ ++ LQALTQIQE TL +VPKI+AVF
Sbjct: 1 MTGLAILDIARDGIVTFLKVAGPLMMIALVVGLAVSLLQALTQIQEQTLIYVPKIVAVFA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
+++ PF+G ++ ++ + +RI +
Sbjct: 61 AMLLMLPFMGDALAGYMGRIAARIAAG 87
>gi|78043118|ref|YP_359853.1| flagellar biosynthetic protein FliQ [Carboxydothermus
hydrogenoformans Z-2901]
gi|77995233|gb|ABB14132.1| flagellar biosynthetic protein FliQ [Carboxydothermus
hydrogenoformans Z-2901]
Length = 89
Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 48/85 (56%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + +A+ + + P L ++ +G+++ LQA TQIQE TLTFVPK+IAVF+
Sbjct: 1 MASLYFIHLAQKSFTVLSLLVGPPLIVSLVVGLIVGILQAATQIQEQTLTFVPKLIAVFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
TL++ + ++ + F + +
Sbjct: 61 TLLLLSGWMLNIMVDFTGQIFQEMA 85
>gi|323341373|ref|ZP_08081617.1| flagellar biosynthetic protein FliQ [Lactobacillus ruminis ATCC
25644]
gi|323091250|gb|EFZ33878.1| flagellar biosynthetic protein FliQ [Lactobacillus ruminis ATCC
25644]
Length = 87
Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 36/86 (41%), Positives = 54/86 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ V ++ R A+ +L SAPV+ AM +G++I+ QA TQIQE TL+FVPK+ A+FI
Sbjct: 1 MSIEVVTDVMRDALIRVLIVSAPVILVAMIVGLIISIFQATTQIQEQTLSFVPKLAAIFI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
TLII+ F+ + F + I +
Sbjct: 61 TLIIAGNFMINILLEFTRHIFRMISN 86
>gi|89895723|ref|YP_519210.1| hypothetical protein DSY2977 [Desulfitobacterium hafniense Y51]
gi|89335171|dbj|BAE84766.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 90
Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 33/85 (38%), Positives = 58/85 (68%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN++DVL +A+ A+ T L PVL ++ +G+L++ QA+TQIQE TLTF+PKI+A+ +
Sbjct: 1 MNQSDVLYLAKEALMTALMIGGPVLGVSLLVGLLVSIFQAMTQIQEQTLTFIPKILAIAL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
+++ P++ I+ F T + + +
Sbjct: 61 VMLLLGPWMLNVITGFTTNLFNDLA 85
>gi|269792927|ref|YP_003317831.1| export protein FliQ family 3 [Thermanaerovibrio acidaminovorans
DSM 6589]
gi|269100562|gb|ACZ19549.1| export protein FliQ family 3 [Thermanaerovibrio acidaminovorans
DSM 6589]
Length = 89
Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 47/88 (53%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V + R A+W + SS P+L AM +G++I LQ T IQE TL F+PKI+A+
Sbjct: 1 MESLSVADAFRQALWISMISSMPILVIAMVVGLVIGILQTATSIQEQTLLFIPKILAIIG 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L+I P++G + + + +
Sbjct: 61 GLLILGPWMGRTVVDMARFLFQSLHRFV 88
>gi|312962262|ref|ZP_07776754.1| flagellar biosynthetic protein FliQ [Pseudomonas fluorescens WH6]
gi|311283599|gb|EFQ62188.1| flagellar biosynthetic protein FliQ [Pseudomonas fluorescens WH6]
Length = 89
Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 49/88 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +++ R A+W A ++ ++ +G+L+A QA TQI E TL+F+P+++ + +
Sbjct: 1 MTPEVAVDLFREALWLTTMMVAVLVVPSLLVGLLVAMFQAATQINEQTLSFLPRLLVMLV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
TLI++ P++ ++ + I +
Sbjct: 61 TLIVAGPWLVQTFMEYILQLYGSIPQLI 88
>gi|57434471|emb|CAI43888.1| EscS protein [Escherichia coli]
Length = 89
Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 51/85 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +++ +W I S P + +A LGI+I+ +QA+TQ+Q+ TL F+ KIIAVF
Sbjct: 1 METGYFVQLCVQTLWIIFILSLPTVIAASVLGIIISLVQAITQLQDQTLPFLLKIIAVFA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
TL ++ ++G I +F +++ I
Sbjct: 61 TLALTYHWMGTTIINFSSIIFEMIP 85
>gi|258404718|ref|YP_003197460.1| flagellar biosynthetic protein FliQ [Desulfohalobium retbaense
DSM 5692]
gi|257796945|gb|ACV67882.1| flagellar biosynthetic protein FliQ [Desulfohalobium retbaense
DSM 5692]
Length = 91
Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 33/83 (39%), Positives = 52/83 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + R ++ TIL ++P++ SA+ +G+LI+ QA TQIQE TL+F PK+ AV +
Sbjct: 1 MTPDFVVALTRQSVETILLVTSPMMISAVVVGLLISIFQAATQIQEQTLSFAPKVAAVMV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSR 83
L I AP+I + ++ VL
Sbjct: 61 ALTIFAPWIIKIVLTYTEEVLRM 83
>gi|117619170|ref|YP_855915.1| flagellar biosynthetic protein FliQ [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|74055045|gb|AAZ95850.1| FliQ [Aeromonas hydrophila]
gi|117560577|gb|ABK37525.1| flagellar biosynthetic protein FliQ [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 89
Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 45/85 (52%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ +++ R A+W + V+ ++ +G+L+A QA T I E TL+F+P++I
Sbjct: 1 MSPETFIDVFREALWLVTIMVCAVILPSLCVGLLVAIFQAATSINEQTLSFLPRLIVTLF 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
L A + + F L++S+I
Sbjct: 61 ALGAGAHWGLQSLMDFFLLMVSQIP 85
>gi|297620336|ref|YP_003708473.1| type III secretion inner membrane protein SctS [Waddlia
chondrophila WSU 86-1044]
gi|297375637|gb|ADI37467.1| type III secretion inner membrane protein SctS [Waddlia
chondrophila WSU 86-1044]
Length = 92
Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 33/86 (38%), Positives = 51/86 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + V+++A M IL SAP + +MF G+++A QA TQIQE TL+F K++AV +
Sbjct: 1 MFQTQVVQLAYQGMLLILILSAPPILISMFFGLMVAIFQAATQIQEQTLSFTVKLVAVTL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
TL+ ++G QI SF + +
Sbjct: 61 TLMFLGGWLGAQIMSFSINIFTNFPR 86
>gi|87307409|ref|ZP_01089554.1| probable flagellar biosynthetic protein fliQ [Blastopirellula
marina DSM 3645]
gi|87290149|gb|EAQ82038.1| probable flagellar biosynthetic protein fliQ [Blastopirellula
marina DSM 3645]
Length = 91
Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 51/88 (57%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ +++ R AM L +AP L + M +G+ I LQALTQIQ+ T+ FVPK +A+
Sbjct: 1 MDVTTTVDLTREAMMVALWIAAPALVTGMLVGLAIGLLQALTQIQDQTVAFVPKFLAMAA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
++ + P++ ++ + +++ I L
Sbjct: 61 AMLFALPWVLQRLMVYTETLVTHIPDRL 88
>gi|261340414|ref|ZP_05968272.1| flagellar biosynthetic protein FliQ [Enterobacter cancerogenus
ATCC 35316]
gi|288317506|gb|EFC56444.1| flagellar biosynthetic protein FliQ [Enterobacter cancerogenus
ATCC 35316]
Length = 89
Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 54/85 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + AM ++ +AP+L A+ G++I+ LQA TQI E+TL+F+PKIIAVF+
Sbjct: 1 MTPESVMMMGTEAMRVAIAVAAPLLLVALVTGLVISILQAATQINEMTLSFIPKIIAVFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
+I++ P++ + ++ + + +
Sbjct: 61 AIIVAGPWMLNLLLDYMRTLFTNLP 85
>gi|302338094|ref|YP_003803300.1| flagellar biosynthetic protein FliQ [Spirochaeta smaragdinae DSM
11293]
gi|301635279|gb|ADK80706.1| flagellar biosynthetic protein FliQ [Spirochaeta smaragdinae DSM
11293]
Length = 89
Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 32/86 (37%), Positives = 49/86 (56%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +E+ R+A++ IL S PVL + +G++I+ QA T IQE TLTFVPKI A+ +
Sbjct: 1 MTLGFAIELIRSAVFQILVLSGPVLLIGVGVGLIISIFQATTSIQEQTLTFVPKIAAILL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
L I P++ + +F + I
Sbjct: 61 ALAIFGPWMLQTLKTFTIDLFMVIPR 86
>gi|87294846|gb|ABD36817.1| flagellar biosynthesis protein FliQ [Pseudomonas fluorescens]
Length = 89
Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 47/85 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M ++I R A+W A ++ ++ +G+L+A QA TQI E TL+F+P+++ + +
Sbjct: 1 MTPEVAVDIFREALWLTTMMVAILVVPSLLVGLLVAMFQAATQINEQTLSFLPRLLVMLV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
TLI+ P+I ++ + I
Sbjct: 61 TLIVGGPWIVQTFMEYIIQLYKNIP 85
>gi|149188096|ref|ZP_01866391.1| flagellar biosynthesis protein Q [Vibrio shilonii AK1]
gi|148838084|gb|EDL55026.1| flagellar biosynthesis protein Q [Vibrio shilonii AK1]
Length = 89
Score = 61.0 bits (147), Expect = 6e-08, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 46/88 (52%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +E+ R A+W +L ++ ++ +G+++A QA T I E TL+F+P++I +
Sbjct: 1 MTPEVFVELFRDALWMVLILVCAIVVPSLLVGLVVAIFQAATSINEQTLSFLPRLIVTIL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
LI A + + F ++ R+ L
Sbjct: 61 ALIGFAHWGTQMMMEFFYEIIERLPQVL 88
>gi|283786651|ref|YP_003366516.1| T3SS structural protein EscS [Citrobacter rodentium ICC168]
gi|15723908|gb|AAL06355.1|AF311901_7 EscS [Citrobacter rodentium]
gi|282950105|emb|CBG89740.1| T3SS structural protein EscS [Citrobacter rodentium ICC168]
Length = 89
Score = 61.0 bits (147), Expect = 6e-08, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 51/85 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +++ +W I S P + +A +GI+I+ +QA+TQ+Q+ TL F+ KIIAVF
Sbjct: 1 MGTGYFVQLCVQTLWIIFILSLPTVIAASVIGIIISLIQAITQLQDQTLPFLLKIIAVFA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
TL ++ ++G I +F +++ I
Sbjct: 61 TLALTYHWMGTTIINFSSIIFEMIP 85
>gi|27380922|ref|NP_772451.1| flagellar biosynthesis protein FliQ [Bradyrhizobium japonicum
USDA 110]
gi|27354088|dbj|BAC51076.1| flagellar biosynthetic protein [Bradyrhizobium japonicum USDA
110]
Length = 87
Score = 61.0 bits (147), Expect = 6e-08, Method: Composition-based stats.
Identities = 33/87 (37%), Positives = 59/87 (67%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + L++AR A+WTI+ S+P++ + +G++++ QALTQIQE TL +VPKI+A+F
Sbjct: 1 MTGPETLDVARDAIWTIVIVSSPLMVVGLVVGVIVSLFQALTQIQEQTLIYVPKILAIFA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
T++++ PF+ + + + + SRI
Sbjct: 61 TMLLALPFMADSLHAHMLRISSRIIGG 87
>gi|32471370|ref|NP_864363.1| flagellar biosynthetic protein fliQ [Rhodopirellula baltica SH 1]
gi|32443211|emb|CAD72042.1| probable flagellar biosynthetic protein fliQ [Rhodopirellula
baltica SH 1]
gi|327537628|gb|EGF24340.1| Bacterial export protein FliQ, family 3 [Rhodopirellula baltica
WH47]
Length = 88
Score = 61.0 bits (147), Expect = 6e-08, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 47/79 (59%)
Query: 4 ADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLI 63
+D +++ R A+ + + P+L M G++I +QALTQIQ+ T++FVPKI+A+ LI
Sbjct: 5 SDAIDLVREALLAAVVLALPMLAVGMLAGLVIGLIQALTQIQDQTVSFVPKIMAMAAVLI 64
Query: 64 ISAPFIGGQISSFVTLVLS 82
P++ ++ F V
Sbjct: 65 ACLPWLMSRMVEFTRHVFE 83
>gi|300310130|ref|YP_003774222.1| type III secretion HrcS protein [Herbaspirillum seropedicae SmR1]
gi|300072915|gb|ADJ62314.1| type III secretion HrcS protein [Herbaspirillum seropedicae SmR1]
Length = 87
Score = 60.6 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 46/83 (55%)
Query: 4 ADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLI 63
AD + + ++W + SAP L A G+ ++ +QA+TQIQ+ TL +V K++AV +TL
Sbjct: 2 ADTINFFQQSLWMAIMMSAPPLLIATLCGLGVSLIQAVTQIQDQTLPYVVKLVAVAVTLA 61
Query: 64 ISAPFIGGQISSFVTLVLSRIQS 86
+IG ++ L + +
Sbjct: 62 SMGRWIGVEMLRLADLAFTMVPD 84
>gi|56551544|ref|YP_162383.1| export protein FliQ family 3 [Zymomonas mobilis subsp. mobilis
ZM4]
gi|241761181|ref|ZP_04759270.1| export protein FliQ family 3 [Zymomonas mobilis subsp. mobilis
ATCC 10988]
gi|260752857|ref|YP_003225750.1| export protein FliQ family 3 [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
gi|56543118|gb|AAV89272.1| export protein FliQ family 3 [Zymomonas mobilis subsp. mobilis
ZM4]
gi|241374800|gb|EER64261.1| export protein FliQ family 3 [Zymomonas mobilis subsp. mobilis
ATCC 10988]
gi|258552220|gb|ACV75166.1| export protein FliQ family 3 [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
Length = 91
Score = 60.6 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 45/87 (51%)
Query: 2 NEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFIT 61
+ + +A+ AMW + AP+L A+ +G+ I +QA T + E L+F+PK++ + +
Sbjct: 4 DPDYFIGVAQQAMWITALAIAPILIPALLIGLFIGMIQAATSLNEQILSFLPKLVVIALV 63
Query: 62 LIISAPFIGGQISSFVTLVLSRIQSSL 88
L + I G I F+ RI +
Sbjct: 64 LALFGGSIFGLIVDFMHETYGRIPDLV 90
>gi|307945652|ref|ZP_07660988.1| flagellar biosynthetic protein FliQ [Roseibium sp. TrichSKD4]
gi|307771525|gb|EFO30750.1| flagellar biosynthetic protein FliQ [Roseibium sp. TrichSKD4]
Length = 88
Score = 60.6 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 40/84 (47%), Positives = 61/84 (72%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +VL++AR +WT++ SAPV+ + +G++IA QALTQIQE+TL FVPKI+A+F+
Sbjct: 1 MTGGEVLDLAREGVWTMIFISAPVMIIGLLVGVVIALFQALTQIQEMTLVFVPKILAIFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
TL++S PF+G ++SF + I
Sbjct: 61 TLLLSLPFMGQLLASFTARIAEMI 84
>gi|325567518|ref|ZP_08144185.1| flagellar biosynthetic protein FliQ [Enterococcus casseliflavus
ATCC 12755]
gi|325158951|gb|EGC71097.1| flagellar biosynthetic protein FliQ [Enterococcus casseliflavus
ATCC 12755]
Length = 87
Score = 60.6 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 34/86 (39%), Positives = 54/86 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M VL++ R A IL+ S P L M +G++I+ QA TQIQE TL+FVPK++A+F+
Sbjct: 1 MTVEMVLDVLREAFLRILAISGPALLVGMLVGLVISIFQATTQIQEQTLSFVPKLLAIFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
TLI++ F+ + +F ++ I +
Sbjct: 61 TLILAGNFMLNLLLNFTEMIFKMIAA 86
>gi|218288311|ref|ZP_03492610.1| flagellar biosynthetic protein FliQ [Alicyclobacillus
acidocaldarius LAA1]
gi|258511389|ref|YP_003184823.1| flagellar biosynthetic protein FliQ [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
gi|218241670|gb|EED08843.1| flagellar biosynthetic protein FliQ [Alicyclobacillus
acidocaldarius LAA1]
gi|257478115|gb|ACV58434.1| flagellar biosynthetic protein FliQ [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
Length = 89
Score = 60.6 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 50/84 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + V+ +A MW ++ +APVL + +G++++ QA TQ+QE TL F+PKIIAV I
Sbjct: 1 MTDTYVIGLAAQVMWLVVKITAPVLLLGLAMGLVVSIFQATTQLQEQTLAFIPKIIAVVI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
L+ P++ + F +L +
Sbjct: 61 ALLAFGPWMLQNLIDFTNSILGNL 84
>gi|117923327|ref|YP_863944.1| flagellar biosynthetic protein FliQ [Magnetococcus sp. MC-1]
gi|117607083|gb|ABK42538.1| flagellar biosynthetic protein FliQ [Magnetococcus sp. MC-1]
Length = 89
Score = 60.6 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 56/88 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V + A+ L SAP+L +A+ +GI I+ LQA+TQIQE+TLTF+PKI+A F+
Sbjct: 1 MTADTVQNLVVEALRLALLISAPMLLTALVVGITISLLQAVTQIQEMTLTFIPKILATFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L+++ P++ +++ + + I + +
Sbjct: 61 ALMLTLPWMIQKLTDYFRHLFDTIPTLI 88
>gi|119947196|ref|YP_944876.1| flagellar biosynthetic protein FliQ [Psychromonas ingrahamii 37]
gi|119865800|gb|ABM05277.1| flagellar biosynthetic protein FliQ [Psychromonas ingrahamii 37]
Length = 89
Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 47/86 (54%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ V+ + ++W I+ A ++ ++ +G+++A QA TQ+ E TL+F+P+++ +
Sbjct: 1 MSPEFVVSLLSQSIWLIIKFVAVLVLPSLVVGLIVAVFQAATQVNEQTLSFLPRLLTTLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
T+I ++ +IS + I
Sbjct: 61 TIIFVGNWMITEISDLFRYLFLNIPH 86
>gi|148976242|ref|ZP_01812966.1| flagellar biosynthetic protein [Vibrionales bacterium SWAT-3]
gi|145964336|gb|EDK29591.1| flagellar biosynthetic protein [Vibrionales bacterium SWAT-3]
Length = 89
Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 51/86 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ + + + A+W I+ + ++ ++ +G+++A QA+TQ+ E TL+F+P+++ +
Sbjct: 1 MSPEEAVTLVSQAIWLIILMVSVLIVPSLVVGLVVAIFQAVTQVNEQTLSFLPRLLVTLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
+I++ ++ +I+ + + I S
Sbjct: 61 CIILAGHWLLQEINDLFLFIFNTIPS 86
>gi|167770201|ref|ZP_02442254.1| hypothetical protein ANACOL_01544 [Anaerotruncus colihominis DSM
17241]
gi|167667523|gb|EDS11653.1| hypothetical protein ANACOL_01544 [Anaerotruncus colihominis DSM
17241]
Length = 87
Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 51/86 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + V+ I + A+ + P+L ++ +G++IA QA TQI E TLTFVPKI+A+ +
Sbjct: 1 MTQEQVMGIFQQAIILAFKLAGPLLAVSIIIGLVIAIFQAATQIHEQTLTFVPKIVAIAL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
+++ P++ +S F+ + I +
Sbjct: 61 MMLLLGPWMITMLSDFMQNLFGMIPT 86
>gi|188534131|ref|YP_001907928.1| Flagellar protein [Erwinia tasmaniensis Et1/99]
gi|188029173|emb|CAO97045.1| Flagellar protein [Erwinia tasmaniensis Et1/99]
Length = 89
Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 53/85 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ I AM L+ +AP+L +A+ G+LI+ LQA TQI E TL+F+PKI+AV
Sbjct: 1 MTPESVMVIGHDAMQVALALAAPLLLAALVSGLLISLLQAATQINEQTLSFIPKILAVVT 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
T++++ P++ + ++ + + +
Sbjct: 61 TMVVAGPWMLNLVLDYMRTLFNNLP 85
>gi|77463635|ref|YP_353139.1| flagellar protein FliQ [Rhodobacter sphaeroides 2.4.1]
gi|332558491|ref|ZP_08412813.1| flagellar biosynthetic protein FliQ [Rhodobacter sphaeroides
WS8N]
gi|3435110|gb|AAC32323.1| flagellar protein FliQ [Rhodobacter sphaeroides]
gi|77388053|gb|ABA79238.1| Flagellar protein FliQ [Rhodobacter sphaeroides 2.4.1]
gi|332276203|gb|EGJ21518.1| flagellar biosynthetic protein FliQ [Rhodobacter sphaeroides
WS8N]
Length = 88
Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 51/86 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ +E R A W IL ++ PVL A+ +G++I LQA T I E TL+FVPK+ V +
Sbjct: 1 MDFDGSIEHLRLAYWNILLTAGPVLGVALAVGLVIGILQAATSINESTLSFVPKLAIVLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
T+ +++ F+ +++ + V I +
Sbjct: 61 TMALASSFMLTRMTDYFAFVFETIAT 86
>gi|91224469|ref|ZP_01259731.1| translocation protein in type III secretion [Vibrio alginolyticus
12G01]
gi|262394132|ref|YP_003285986.1| type III secretion protein YscS [Vibrio sp. Ex25]
gi|269967240|ref|ZP_06181304.1| translocation protein in type III secretion [Vibrio alginolyticus
40B]
gi|91190811|gb|EAS77078.1| translocation protein in type III secretion [Vibrio alginolyticus
12G01]
gi|262284524|gb|ACY41061.1| VscS [Vibrio alginolyticus]
gi|262337726|gb|ACY51521.1| type III secretion protein YscS [Vibrio sp. Ex25]
gi|269828096|gb|EEZ82366.1| translocation protein in type III secretion [Vibrio alginolyticus
40B]
Length = 88
Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 54/85 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ A+++ A+ +L S P + A +G L++ +QALTQ+QE TL FV K+IAV I
Sbjct: 1 MHSAEIIHFTTQALTLVLYLSLPPILVAALVGTLVSLIQALTQVQEQTLGFVVKLIAVII 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
TL ++ ++G ++ +F +L + +I
Sbjct: 61 TLFVTTQWLGAELHAFASLAMDKIP 85
>gi|257866391|ref|ZP_05646044.1| flagellar biosynthesis protein [Enterococcus casseliflavus EC30]
gi|257873093|ref|ZP_05652746.1| flagellar biosynthesis protein [Enterococcus casseliflavus EC10]
gi|257876004|ref|ZP_05655657.1| flagellar biosynthesis protein [Enterococcus casseliflavus EC20]
gi|257800349|gb|EEV29377.1| flagellar biosynthesis protein [Enterococcus casseliflavus EC30]
gi|257807257|gb|EEV36079.1| flagellar biosynthesis protein [Enterococcus casseliflavus EC10]
gi|257810170|gb|EEV38990.1| flagellar biosynthesis protein [Enterococcus casseliflavus EC20]
Length = 87
Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats.
Identities = 34/86 (39%), Positives = 54/86 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M VL++ R A IL+ S P L M +G++I+ QA TQIQE TL+FVPK++A+F+
Sbjct: 1 MTVEMVLDVLREAFLRILAISGPALLVGMLVGLVISIFQATTQIQEQTLSFVPKLLAIFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
TLI++ F+ + +F ++ I +
Sbjct: 61 TLILAGNFMLNLLLNFTKMIFKMIAA 86
>gi|260886650|ref|ZP_05897913.1| flagellar biosynthetic protein FliQ [Selenomonas sputigena ATCC
35185]
gi|330839519|ref|YP_004414099.1| flagellar biosynthetic protein FliQ [Selenomonas sputigena ATCC
35185]
gi|260863793|gb|EEX78293.1| flagellar biosynthetic protein FliQ [Selenomonas sputigena ATCC
35185]
gi|329747283|gb|AEC00640.1| flagellar biosynthetic protein FliQ [Selenomonas sputigena ATCC
35185]
Length = 89
Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 53/85 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ +++I + A+W +L SAP+L + +G+L++ QA T IQE TL F+PKIIAVF+
Sbjct: 1 MSSDLIIQIGQNALWIVLLVSAPMLGLGLAVGLLVSVFQATTSIQEATLAFIPKIIAVFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
++I P++ + + T + +
Sbjct: 61 AILIFGPWMLSILVEYFTNIFVNLP 85
>gi|258622509|ref|ZP_05717531.1| Flagellar biosynthetic protein fliQ [Vibrio mimicus VM573]
gi|258624668|ref|ZP_05719603.1| Flagellar biosynthetic protein fliQ [Vibrio mimicus VM603]
gi|262173375|ref|ZP_06041052.1| flagellar biosynthesis protein FliQ [Vibrio mimicus MB-451]
gi|258583060|gb|EEW07874.1| Flagellar biosynthetic protein fliQ [Vibrio mimicus VM603]
gi|258585209|gb|EEW09936.1| Flagellar biosynthetic protein fliQ [Vibrio mimicus VM573]
gi|261890733|gb|EEY36720.1| flagellar biosynthesis protein FliQ [Vibrio mimicus MB-451]
Length = 89
Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 44/88 (50%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + + A+W I+ A ++ + +G+ IA QA TQI E TL+F+P+++A +
Sbjct: 1 MTPEMAVTLFSNAVWMIIIIVAVLVVPGLIVGLGIAVFQAATQINEQTLSFLPRLLATLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+I + ++ +I + I +
Sbjct: 61 MVIFAGHWMLRKIMELFNYLFHSIPGMI 88
>gi|16125327|ref|NP_419891.1| flagellar biosynthesis protein FliQ [Caulobacter crescentus CB15]
gi|3023776|sp|Q45974|FLIQ_CAUCR RecName: Full=Flagellar biosynthetic protein FliQ
gi|535423|gb|AAA66206.1| FliQ [Caulobacter crescentus CB15]
gi|13422377|gb|AAK23059.1| flagellar biosynthesis protein FliQ [Caulobacter crescentus CB15]
Length = 87
Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats.
Identities = 38/86 (44%), Positives = 56/86 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M A+VL++ R A+W L APVL + +G++I QALTQIQE TL + PKI+A+FI
Sbjct: 1 MTGAEVLDVGRDAIWLTLQLCAPVLIVGLVVGVIIGLFQALTQIQEATLVYAPKIVAIFI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
+L+I P +G +S F+ + +RI
Sbjct: 61 SLLIFLPLMGSLMSGFMRQIAARIAG 86
>gi|317048610|ref|YP_004116258.1| flagellar biosynthetic protein FliQ [Pantoea sp. At-9b]
gi|316950227|gb|ADU69702.1| flagellar biosynthetic protein FliQ [Pantoea sp. At-9b]
Length = 89
Score = 60.6 bits (146), Expect = 8e-08, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 51/85 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + + AM L +AP+L A+ G++I+ LQA TQ+ E TL+F+PKI+AV
Sbjct: 1 MTPESVMVMGQDAMRVALLLAAPMLLVALVSGLIISLLQAATQVNEQTLSFIPKILAVAA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
T +I+ P++ I ++ + S +
Sbjct: 61 TAVIAGPWMLNLILDYMRTLFSNLP 85
>gi|292493586|ref|YP_003529025.1| flagellar biosynthetic protein FliQ [Nitrosococcus halophilus
Nc4]
gi|291582181|gb|ADE16638.1| flagellar biosynthetic protein FliQ [Nitrosococcus halophilus
Nc4]
Length = 89
Score = 60.3 bits (145), Expect = 8e-08, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 48/88 (54%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M VL + + I +L ++ +G+L++ QA TQI E+TL+F+PK++A+ +
Sbjct: 1 MTPDTVLSLLHRGLEVITLLLLVLLLPSLAVGLLVSMFQAATQINEMTLSFIPKLLAILL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
T+ ++ P++ + + + I + +
Sbjct: 61 TMALAGPWMLRLVLDYTRQLFRDIPALI 88
>gi|312879604|ref|ZP_07739404.1| flagellar biosynthetic protein FliQ [Aminomonas paucivorans DSM
12260]
gi|310782895|gb|EFQ23293.1| flagellar biosynthetic protein FliQ [Aminomonas paucivorans DSM
12260]
Length = 89
Score = 60.3 bits (145), Expect = 8e-08, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 48/88 (54%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + + AMW L +S P+L AM +G++I LQ T IQE TL F+PKI+AV +
Sbjct: 1 MEALSISDALHQAMWVTLFASLPLLLVAMVVGLIIGILQTATSIQEQTLVFIPKIVAVIL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+I+ P++ + + T + + +
Sbjct: 61 AMILLGPWMCRLVGDYATFLFESLHRFV 88
>gi|183221910|ref|YP_001839906.1| flagellar biosynthetic protein FliQ [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Paris)']
gi|189911979|ref|YP_001963534.1| endoflagellar biosynthesis pathway protein [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Ames)']
gi|167776655|gb|ABZ94956.1| Endoflagellar biosynthesis pathway protein [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Ames)']
gi|167780332|gb|ABZ98630.1| Flagellar biosynthetic protein FliQ [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Paris)']
Length = 87
Score = 60.3 bits (145), Expect = 8e-08, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 50/85 (58%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M E DV+ + R A L S+P+L +A+ +G+++ LQ T IQE T+ FVPK++++F
Sbjct: 1 MTEVDVVNMMREAFIVTLKISSPILITALVVGLIVGILQTTTSIQEPTIAFVPKLVSIFA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
++ + ++ ++ + + I+
Sbjct: 61 VIVFFSAWMVRVMTDYTREIFFMIE 85
>gi|256370974|ref|YP_003108798.1| flagellar biosynthetic protein FliQ [Acidimicrobium ferrooxidans
DSM 10331]
gi|256007558|gb|ACU53125.1| flagellar biosynthetic protein FliQ [Acidimicrobium ferrooxidans
DSM 10331]
Length = 91
Score = 60.3 bits (145), Expect = 8e-08, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 57/88 (64%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN+A VL+IAR A+ + PVL A+ +G+++A Q LTQIQE TL+FVPK+ A+ +
Sbjct: 1 MNDAAVLQIARTALEVATLVAGPVLAVALLVGLVVALAQTLTQIQEATLSFVPKLAAIAL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L+ + ++ ++++ T + S+I +
Sbjct: 61 VLLFTGHWMLQELTTMTTQLYSQIPHLV 88
>gi|146277691|ref|YP_001167850.1| flagellar biosynthetic protein FliQ [Rhodobacter sphaeroides ATCC
17025]
gi|145555932|gb|ABP70545.1| flagellar biosynthetic protein FliQ [Rhodobacter sphaeroides ATCC
17025]
Length = 88
Score = 60.3 bits (145), Expect = 8e-08, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 51/86 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ +E R A W IL ++ PVL A+ +G++I LQA T I E TL+FVPK+ V +
Sbjct: 1 MDFDGSIEHLRIAYWNILLTAGPVLGVALAVGLVIGILQAATSINEATLSFVPKLAIVLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
T+ +++ F+ +++ + V I +
Sbjct: 61 TMALASSFMLTRMTDYFAFVFETIAT 86
>gi|126462467|ref|YP_001043581.1| flagellar biosynthetic protein FliQ [Rhodobacter sphaeroides ATCC
17029]
gi|126104131|gb|ABN76809.1| flagellar biosynthetic protein FliQ [Rhodobacter sphaeroides ATCC
17029]
Length = 88
Score = 60.3 bits (145), Expect = 9e-08, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 51/86 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ +E R A W IL ++ PVL A+ +G++I LQA T I E TL+FVPK+ V +
Sbjct: 1 MDFDGSIEHLRLAYWNILLTAGPVLGVALAVGLVIGILQAATSINESTLSFVPKLAIVLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
T+ +++ F+ +++ + V I +
Sbjct: 61 TMALASSFMLTRMTDYFAFVFETIAA 86
>gi|283836564|ref|ZP_06356305.1| surface presentation of antigens protein SpaQ [Citrobacter
youngae ATCC 29220]
gi|291067493|gb|EFE05602.1| surface presentation of antigens protein SpaQ [Citrobacter
youngae ATCC 29220]
Length = 86
Score = 60.3 bits (145), Expect = 9e-08, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 52/84 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+++ + +W ++ S P + +A +G+LI+ +QA+TQIQ+ T+ F+ K++ V +
Sbjct: 1 MSDSVIAHFGEELLWIVVMLSLPTVVAASVVGVLISLIQAVTQIQDQTVQFLIKLVVVSV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
L+++ ++G + S+ L+ +I
Sbjct: 61 VLVMTYNWMGNVLLSYTHLIFQQI 84
>gi|171915733|ref|ZP_02931203.1| putative type III secretion protein [Verrucomicrobium spinosum
DSM 4136]
Length = 89
Score = 60.3 bits (145), Expect = 9e-08, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 52/86 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN+A +++I A+ +L S P + A +G++++ QALTQ+QE TL+F K+I V +
Sbjct: 1 MNQAYIIDITNKALILVLILSLPPIVVATVVGVVVSLFQALTQVQEQTLSFAVKLIVVTV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
+I +A + G ++ +F T + +
Sbjct: 61 VIIATASWTGAEVINFTTHIFDTFPT 86
>gi|261821162|ref|YP_003259268.1| flagellar biosynthesis protein FliQ [Pectobacterium wasabiae
WPP163]
gi|261605175|gb|ACX87661.1| flagellar biosynthetic protein FliQ [Pectobacterium wasabiae
WPP163]
Length = 89
Score = 60.3 bits (145), Expect = 9e-08, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 53/86 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + AM L+ +AP L +A+ G+ I+ LQA TQI E+TL+F+PKI+ VF
Sbjct: 1 MTPESVMALGYEAMKVALALAAPPLLAALLSGLTISLLQAATQINEMTLSFIPKILTVFF 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
TL+I+ P++ + ++ + ++ +
Sbjct: 61 TLVIAGPWMLNLMLDYMRTLFGQLPN 86
>gi|257871302|ref|ZP_05650955.1| flagellar biosynthesis protein [Enterococcus gallinarum EG2]
gi|257805466|gb|EEV34288.1| flagellar biosynthesis protein [Enterococcus gallinarum EG2]
Length = 87
Score = 60.3 bits (145), Expect = 9e-08, Method: Composition-based stats.
Identities = 34/86 (39%), Positives = 54/86 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M VL++ R A IL+ S P L M +G++I+ QA TQIQE TL+FVPK++A+F+
Sbjct: 1 MTVEMVLDVLREAFLRILAISGPALLVGMLVGLVISIFQATTQIQEQTLSFVPKLLAIFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
TLI++ F+ + +F ++ I +
Sbjct: 61 TLILAGNFMLNLLLNFTKMIFKMISA 86
>gi|253688963|ref|YP_003018153.1| flagellar biosynthetic protein FliQ [Pectobacterium carotovorum
subsp. carotovorum PC1]
gi|251755541|gb|ACT13617.1| flagellar biosynthetic protein FliQ [Pectobacterium carotovorum
subsp. carotovorum PC1]
Length = 89
Score = 60.3 bits (145), Expect = 9e-08, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 53/86 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + AM L+ +AP L +A+ G+ I+ LQA TQ+ E+TL+F+PKI+ VF
Sbjct: 1 MTPESVMALGYEAMKIALALAAPPLIAALLSGLTISLLQAATQVNEMTLSFIPKILTVFF 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
TL+I+ P++ + ++ + ++ +
Sbjct: 61 TLVIAGPWMLNLMLDYMRTLFGQLPN 86
>gi|50120648|ref|YP_049815.1| flagellar biosynthesis protein FliQ [Pectobacterium atrosepticum
SCRI1043]
gi|49611174|emb|CAG74620.1| flagellar biosynthetic protein [Pectobacterium atrosepticum
SCRI1043]
Length = 89
Score = 60.3 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 53/86 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + AM L+ +AP L +A+ G+ I+ LQA TQ+ E+TL+F+PKI+ VF
Sbjct: 1 MTPESVMALGYEAMKVALALAAPPLIAALLSGLTISLLQAATQVNEMTLSFIPKILTVFF 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
TL+I+ P++ + ++ + ++ +
Sbjct: 61 TLVIAGPWMLNLMLDYMRTLFGQLPN 86
>gi|91200237|emb|CAJ73281.1| similar to flagellar biosynthetic protein FliQ [Candidatus
Kuenenia stuttgartiensis]
Length = 89
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 43/87 (49%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + I + + T AP+L AM +G+ I QA++ I E TLTF+PK+ AV
Sbjct: 1 MTPEVITTIGKDFLQTTFLMMAPLLGVAMIVGLAIGIFQAVSSIHEQTLTFLPKVFAVLG 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
+ P++ ++S+ +L +
Sbjct: 61 MFLFCLPWMLRIMTSYTVNLLGELAKY 87
>gi|85059284|ref|YP_454986.1| putative type III secretion apparatus [Sodalis glossinidius str.
'morsitans']
gi|84779804|dbj|BAE74581.1| putative type III secretion apparatus [Sodalis glossinidius str.
'morsitans']
Length = 89
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 36/84 (42%), Positives = 55/84 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN+A + + MW +L +S PV+ A +GIL++ QALTQIQ+ TL F+ K++AV I
Sbjct: 1 MNDAALTHLVTQLMWIVLITSLPVVLVASAVGILVSLFQALTQIQDQTLQFMIKLLAVAI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
TL+ S P++GG + + VL +I
Sbjct: 61 TLMASYPWLGGILLGYTRQVLLQI 84
>gi|317407762|gb|EFV87689.1| BscS protein [Achromobacter xylosoxidans C54]
Length = 88
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 50/82 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ +D++ +++ +L S P + +A +G L + QALTQIQE TL+F K+I VF
Sbjct: 1 MSTSDLVSYMTQSLYLVLWLSLPPIAAAAIIGTLFSLFQALTQIQEQTLSFAIKMIVVFG 60
Query: 61 TLIISAPFIGGQISSFVTLVLS 82
++++A ++G ++ +F S
Sbjct: 61 VILLTARWVGTELYNFTVSTFS 82
>gi|157363489|ref|YP_001470256.1| flagellar biosynthetic protein FliQ [Thermotoga lettingae TMO]
gi|157314093|gb|ABV33192.1| flagellar biosynthetic protein FliQ [Thermotoga lettingae TMO]
Length = 88
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 46/84 (54%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M ++ + + T+L P L ++ +G++I+ QA+TQI E TLTF PKII V +
Sbjct: 1 MTIEVFIDAFKNGIETVLVVVTPALLISLVVGLIISIFQAVTQIHEQTLTFAPKIIVVLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
T++ ++ +I + + ++
Sbjct: 61 TVMFLGGWMLEKIVEYAKEMWEKL 84
>gi|56460297|ref|YP_155578.1| flagellar biosynthesis protein FliQ [Idiomarina loihiensis L2TR]
gi|56179307|gb|AAV82029.1| Flagellar biosynthesis protein FliQ [Idiomarina loihiensis L2TR]
Length = 89
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 45/85 (52%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ L+I + A+ TI+ A ++ + +G+++A QA T I E TL+F+P+++
Sbjct: 1 MSPEMFLDIFQEALKTIVIMVAFIIIPGLLVGLVVAVFQAATSINEQTLSFLPRLLVTLA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
+ + F+ + F + +RI
Sbjct: 61 VIGLGGHFLTETVMDFTIEMFNRIP 85
>gi|162147442|ref|YP_001601903.1| flagellar biosynthetic protein fliQ [Gluconacetobacter
diazotrophicus PAl 5]
gi|209545552|ref|YP_002277781.1| export protein FliQ family 3 [Gluconacetobacter diazotrophicus
PAl 5]
gi|161786019|emb|CAP55601.1| putative flagellar biosynthetic protein fliQ [Gluconacetobacter
diazotrophicus PAl 5]
gi|209533229|gb|ACI53166.1| export protein FliQ family 3 [Gluconacetobacter diazotrophicus
PAl 5]
Length = 91
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 48/80 (60%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
D+ +I R + + AP L +++ G+L++ QA+TQ+ E TL+FVPK +A L++
Sbjct: 6 DIHDILRQTLIVAVKMGAPSLLASLCAGVLVSLFQAMTQVNEATLSFVPKFVAAMAALLL 65
Query: 65 SAPFIGGQISSFVTLVLSRI 84
+ F+ ++++ ++ ++
Sbjct: 66 TGSFMYSTLNTYAHVIFDQM 85
>gi|157371198|ref|YP_001479187.1| flagellar biosynthesis protein FliQ [Serratia proteamaculans 568]
gi|157322962|gb|ABV42059.1| flagellar biosynthetic protein FliQ [Serratia proteamaculans 568]
Length = 89
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 56/88 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + AM L+ +AP+L +A+ G++++ LQA TQI E+TL+F+PKI+AV
Sbjct: 1 MTPESVMALGTEAMKVALALAAPMLLAALISGLVVSLLQAATQINEMTLSFIPKILAVVA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
T++I+ P++ + ++ + + + + +
Sbjct: 61 TIVIAGPWMLNLLLDYMRTLFTNLPNLI 88
>gi|15606961|ref|NP_214343.1| flagellar biosynthesis protein FliQ [Aquifex aeolicus VF5]
gi|6225368|sp|O67774|FLIQ_AQUAE RecName: Full=Flagellar biosynthetic protein FliQ
gi|2984201|gb|AAC07731.1| flagellar biosynthesis protein FliQ [Aquifex aeolicus VF5]
Length = 89
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 49/85 (57%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + ++ + + A+ L + PVL S +G++++ QA TQIQE+TL+++PK+I F+
Sbjct: 1 MEQDLIVSLGQRALEMTLLLALPVLLSTFVVGLVVSIFQAATQIQEMTLSYIPKVITAFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
+ + ++ ++ F + + I
Sbjct: 61 VIFLLGGWMMRKLVDFAVEIFANIP 85
>gi|304398866|ref|ZP_07380736.1| flagellar biosynthetic protein FliQ [Pantoea sp. aB]
gi|308187301|ref|YP_003931432.1| flagellar biosynthetic protein fliQ [Pantoea vagans C9-1]
gi|304353570|gb|EFM17947.1| flagellar biosynthetic protein FliQ [Pantoea sp. aB]
gi|308057811|gb|ADO09983.1| Probable flagellar biosynthetic protein fliQ [Pantoea vagans
C9-1]
Length = 89
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 52/85 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + + AM L +AP+L +A+ G+LI+ +QA TQ+ E TL+F+PKI+AV
Sbjct: 1 MTPESVMVMGQEAMRVALMLAAPLLLAALVSGLLISLIQAATQVNEQTLSFIPKILAVAT 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
T II+ P++ + ++ V + +
Sbjct: 61 TGIIAGPWMLNLLLDYIRTVFTNLP 85
>gi|90577374|ref|ZP_01233185.1| flagellar biosynthetic protein [Vibrio angustum S14]
gi|90440460|gb|EAS65640.1| flagellar biosynthetic protein [Vibrio angustum S14]
Length = 89
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 45/88 (51%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +++ A+W I++ ++ + +G++IA QA TQI E TL+F+P++I +
Sbjct: 1 MTPELAVDLFSNAVWLIINMVMVLVIPGLLVGLVIAVFQAATQINEQTLSFLPRLIMTLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+I + ++ ++ + I +
Sbjct: 61 MVIFAGHWMLRRLMELFDYLFHNIPGMI 88
>gi|21672368|ref|NP_660435.1| flagellar biosynthetic protein FliQ [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
gi|25008466|sp|Q8KA36|FLIQ_BUCAP RecName: Full=Flagellar biosynthetic protein FliQ
gi|21622973|gb|AAM67646.1| flagellar biosynthetic protein FliQ [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
Length = 90
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 52/86 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + +AM L ++P+L SA+ G++I+ LQA TQ+ E TL+F+PKII++ +
Sbjct: 1 MTPEYVMGLFHSAMKVTLMLASPLLLSALVSGLIISILQAATQVNEQTLSFIPKIISILV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
+ + P++ G + ++ + I S
Sbjct: 61 VITLLGPWMLGVMLDYMHNLFYNIPS 86
>gi|238927448|ref|ZP_04659208.1| flagellar biosynthesis protein FliQ [Selenomonas flueggei ATCC
43531]
gi|238884730|gb|EEQ48368.1| flagellar biosynthesis protein FliQ [Selenomonas flueggei ATCC
43531]
Length = 89
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 34/88 (38%), Positives = 55/88 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ V+++A+ A+ +L SAP+L + +G+L+A QA T IQE TL F+PKIIAVF+
Sbjct: 1 MSGDLVIQLAQEALMVVLLVSAPMLGLGLIVGLLVAVFQATTSIQEQTLAFIPKIIAVFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
++I P++ + +VT V + L
Sbjct: 61 AILIFGPWMLRIMVEYVTNVFVNLPQYL 88
>gi|302037619|ref|YP_003797941.1| flagellar biosynthetic protein FliQ [Candidatus Nitrospira
defluvii]
gi|300605683|emb|CBK42016.1| Flagellar biosynthetic protein FliQ, export component [Candidatus
Nitrospira defluvii]
Length = 89
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/88 (39%), Positives = 58/88 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V EI R A+ T + SAP+L ++ +G+L++ QA+TQI E TLTFVPK++AVF
Sbjct: 1 MTIETVTEIGRQAIETTMLVSAPILGLSLIVGLLVSTFQAMTQINEATLTFVPKVLAVFA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
++ P++ G + +F+T +++ I S +
Sbjct: 61 ATLLFLPWMMGVLIAFMTHIITSIPSLI 88
>gi|119476306|ref|ZP_01616657.1| flagellar biosynthetic protein FliQ [marine gamma proteobacterium
HTCC2143]
gi|119450170|gb|EAW31405.1| flagellar biosynthetic protein FliQ [marine gamma proteobacterium
HTCC2143]
Length = 89
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 53/88 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+++ R A+ I+ + ++ ++ +G++I+ QA TQI E TL+F+P++I
Sbjct: 1 MTPGVVIDLFREALLLIILLVSIMVVPSLIVGLVISVFQAATQINEQTLSFLPRLITTLG 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
LI++ P++ ++ F T ++S I + +
Sbjct: 61 MLILAGPYLLNELIDFTTRLVSTIPTLI 88
>gi|74317629|ref|YP_315369.1| flagellar biosynthesis protein FliQ [Thiobacillus denitrificans
ATCC 25259]
gi|74057124|gb|AAZ97564.1| flagellar biosynthesis protein FliQ [Thiobacillus denitrificans
ATCC 25259]
Length = 89
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 51/86 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ I R A+ + SAPVL + +G++++ QA TQI + +L+F+PK++AV
Sbjct: 1 MTPESVMTIGRTALEMTILVSAPVLLVTLVVGLVVSVFQAATQINDASLSFIPKVLAVLA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
T ++ P++ ++ ++ VL+ +
Sbjct: 61 TFALAGPWMLTVMTDYMRRVLTELPG 86
>gi|212702656|ref|ZP_03310784.1| hypothetical protein DESPIG_00684 [Desulfovibrio piger ATCC
29098]
gi|212673928|gb|EEB34411.1| hypothetical protein DESPIG_00684 [Desulfovibrio piger ATCC
29098]
Length = 85
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 48/80 (60%)
Query: 4 ADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLI 63
++ A A++ ++ S P + A +GI+++ +QA+TQ+QE TL F K++AV +TL
Sbjct: 2 ELAIDYAVKALYLVMILSLPPIIVASVVGIVLSLIQAITQLQEQTLAFGVKLLAVGLTLF 61
Query: 64 ISAPFIGGQISSFVTLVLSR 83
+ ++ G+I + + +R
Sbjct: 62 LMGKWLSGEILRYSEDIFNR 81
>gi|303246799|ref|ZP_07333076.1| flagellar biosynthetic protein FliQ [Desulfovibrio fructosovorans
JJ]
gi|302491816|gb|EFL51696.1| flagellar biosynthetic protein FliQ [Desulfovibrio fructosovorans
JJ]
Length = 89
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 34/88 (38%), Positives = 59/88 (67%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ +AR A+ T L + P+L ++ +G++I+ LQA TQIQE+TLTFVPKI+++FI
Sbjct: 1 MTTDMVVALARQAIETALFLALPMLGVSLVVGVVISVLQAATQIQEMTLTFVPKILSMFI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L+++ P++ ++ +F + I + L
Sbjct: 61 ALLVAFPWMMDKMINFTKELFMNIPNYL 88
>gi|83944177|ref|ZP_00956633.1| flagellar biosynthesis protein [Sulfitobacter sp. EE-36]
gi|83955122|ref|ZP_00963778.1| flagellar biosynthesis protein [Sulfitobacter sp. NAS-14.1]
gi|83840451|gb|EAP79624.1| flagellar biosynthesis protein [Sulfitobacter sp. NAS-14.1]
gi|83845044|gb|EAP82925.1| flagellar biosynthesis protein [Sulfitobacter sp. EE-36]
Length = 89
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 41/87 (47%), Positives = 53/87 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ + EI R + L SAPVL A+ +G+ IAF QALTQIQE+TLTFVPKI A+F+
Sbjct: 1 MDSVTIYEIIRQTLTVTLIGSAPVLVVALGVGLAIAFFQALTQIQEMTLTFVPKIAAIFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
TL IS PFI + V + +
Sbjct: 61 TLAISIPFIFSTLVGLSDRVFDLVSNG 87
>gi|163801856|ref|ZP_02195753.1| flagellar biosynthesis protein Q [Vibrio sp. AND4]
gi|159174364|gb|EDP59168.1| flagellar biosynthesis protein Q [Vibrio sp. AND4]
Length = 89
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 48/88 (54%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +E+ R A+W +L ++ ++ +G+++A QA T I E TL+F+P++I +
Sbjct: 1 MTPEMFVELFRDALWMVLIMVCAIIIPSLLIGLVVAIFQAATSINEQTLSFLPRLIITLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
TL++ ++ + + ++ R+ L
Sbjct: 61 TLMLFGHWMTQMLMEYFFGLIERLPQVL 88
>gi|313895831|ref|ZP_07829385.1| flagellar biosynthetic protein FliQ [Selenomonas sp. oral taxon
137 str. F0430]
gi|320529417|ref|ZP_08030505.1| flagellar biosynthetic protein FliQ [Selenomonas artemidis F0399]
gi|312975256|gb|EFR40717.1| flagellar biosynthetic protein FliQ [Selenomonas sp. oral taxon
137 str. F0430]
gi|320138383|gb|EFW30277.1| flagellar biosynthetic protein FliQ [Selenomonas artemidis F0399]
Length = 89
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 55/88 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ V+++A+ A+ +L SAP+L + +G+L+A QA T IQE TL F+PKI+AVF+
Sbjct: 1 MSGDLVIQLAQEALMIVLLVSAPMLGLGLIVGLLVAVFQATTSIQEQTLAFIPKIVAVFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
++I P++ + +VT V + L
Sbjct: 61 AILIFGPWMLRIMVEYVTNVFVNLPQYL 88
>gi|311992341|gb|ADQ26744.1| flagellar export component [Aeromonas hydrophila]
Length = 88
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 44/84 (52%)
Query: 2 NEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFIT 61
+ +++ R A+W + V+ ++ +G+L+A QA T I E TL+F+P++I
Sbjct: 1 SPETFIDVFREALWLVTIMVCAVILPSLCVGLLVAIFQAATSINEQTLSFLPRLIVTLFA 60
Query: 62 LIISAPFIGGQISSFVTLVLSRIQ 85
L A + + F L++S+I
Sbjct: 61 LGAGAHWGLQSLMDFFLLMVSQIP 84
>gi|54307252|ref|YP_128272.1| putative flagellar biosynthetic protein [Photobacterium profundum
SS9]
gi|46911672|emb|CAG18470.1| putative flagellar biosynthetic protein [Photobacterium profundum
SS9]
Length = 89
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 45/88 (51%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN V A+ I+S ++ ++ +G++++ QA TQI E TL+F+P+++ F
Sbjct: 1 MNSEFVATFFGDALMIIVSMVCVLIVPSLLVGLVVSIFQAATQINEQTLSFLPRLLMTFA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L + P++ +S T + I +
Sbjct: 61 MLGFAGPWLLRTLSDLFTRLFLNIPHLI 88
>gi|86750883|ref|YP_487379.1| flagellar biosynthesis protein FliQ [Rhodopseudomonas palustris
HaA2]
gi|86573911|gb|ABD08468.1| flagellar biosynthetic protein FliQ [Rhodopseudomonas palustris
HaA2]
Length = 87
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 38/87 (43%), Positives = 62/87 (71%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M A+ L+IAR A+WTI+ SAP++ + +G+ ++ +QALTQIQE TL FVPKI+A+F+
Sbjct: 1 MTGAETLDIAREAVWTIVIVSAPLMVVGLVVGVAVSLVQALTQIQEQTLVFVPKILAMFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
TL+++ PF+ ++ + + + SRI
Sbjct: 61 TLVLTLPFMADRLHAEMLRISSRIVGG 87
>gi|28869177|ref|NP_791796.1| flagellar biosynthetic protein FliQ [Pseudomonas syringae pv.
tomato str. DC3000]
gi|66046672|ref|YP_236513.1| flagellar biosynthesis protein FliQ [Pseudomonas syringae pv.
syringae B728a]
gi|71735616|ref|YP_275527.1| flagellar biosynthesis protein FliQ [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|213967546|ref|ZP_03395694.1| flagellar biosynthesis protein FliQ [Pseudomonas syringae pv.
tomato T1]
gi|237799249|ref|ZP_04587710.1| flagellar biosynthesis protein FliQ [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|257484902|ref|ZP_05638943.1| flagellar biosynthesis protein FliQ [Pseudomonas syringae pv.
tabaci ATCC 11528]
gi|289629019|ref|ZP_06461973.1| flagellar biosynthesis protein FliQ [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|289651609|ref|ZP_06482952.1| flagellar biosynthesis protein FliQ [Pseudomonas syringae pv.
aesculi str. 2250]
gi|289678971|ref|ZP_06499861.1| flagellar biosynthesis protein FliQ [Pseudomonas syringae pv.
syringae FF5]
gi|298487820|ref|ZP_07005860.1| Flagellar biosynthesis protein fliQ [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|301382883|ref|ZP_07231301.1| flagellar biosynthesis protein FliQ [Pseudomonas syringae pv.
tomato Max13]
gi|302061093|ref|ZP_07252634.1| flagellar biosynthesis protein FliQ [Pseudomonas syringae pv.
tomato K40]
gi|302131291|ref|ZP_07257281.1| flagellar biosynthesis protein FliQ [Pseudomonas syringae pv.
tomato NCPPB 1108]
gi|28852417|gb|AAO55491.1| flagellar biosynthetic protein FliQ [Pseudomonas syringae pv.
tomato str. DC3000]
gi|63257379|gb|AAY38475.1| Flagellar biosynthesis protein FliQ [Pseudomonas syringae pv.
syringae B728a]
gi|71556169|gb|AAZ35380.1| flagellar biosynthetic protein FliQ [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|213927847|gb|EEB61394.1| flagellar biosynthesis protein FliQ [Pseudomonas syringae pv.
tomato T1]
gi|298157545|gb|EFH98625.1| Flagellar biosynthesis protein fliQ [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|320325128|gb|EFW81197.1| flagellar biosynthesis protein FliQ [Pseudomonas syringae pv.
glycinea str. B076]
gi|320329387|gb|EFW85380.1| flagellar biosynthesis protein FliQ [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330866459|gb|EGH01168.1| flagellar biosynthesis protein FliQ [Pseudomonas syringae pv.
aesculi str. 0893_23]
gi|330876030|gb|EGH10179.1| flagellar biosynthesis protein FliQ [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
gi|330880586|gb|EGH14735.1| flagellar biosynthesis protein FliQ [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330889046|gb|EGH21707.1| flagellar biosynthesis protein FliQ [Pseudomonas syringae pv.
mori str. 301020]
gi|330899442|gb|EGH30861.1| flagellar biosynthesis protein FliQ [Pseudomonas syringae pv.
japonica str. M301072PT]
gi|330953763|gb|EGH54023.1| flagellar biosynthesis protein FliQ [Pseudomonas syringae Cit 7]
gi|330964682|gb|EGH64942.1| flagellar biosynthesis protein FliQ [Pseudomonas syringae pv.
actinidiae str. M302091]
gi|330976009|gb|EGH76075.1| flagellar biosynthesis protein FliQ [Pseudomonas syringae pv.
aptata str. DSM 50252]
gi|330986503|gb|EGH84606.1| flagellar biosynthesis protein FliQ [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|331011078|gb|EGH91134.1| flagellar biosynthesis protein FliQ [Pseudomonas syringae pv.
tabaci ATCC 11528]
gi|331016990|gb|EGH97046.1| flagellar biosynthesis protein FliQ [Pseudomonas syringae pv.
lachrymans str. M302278PT]
gi|331022104|gb|EGI02161.1| flagellar biosynthesis protein FliQ [Pseudomonas syringae pv.
oryzae str. 1_6]
Length = 89
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 49/88 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +++ R A+W A ++ ++ G+L+A QA TQI E TL+F+P+++ + +
Sbjct: 1 MTPEVAVDLFREALWLTTVLVAILVVPSLLCGLLVAMFQAATQINEQTLSFLPRLLVMLV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
TLI+ P++ ++ + + I + +
Sbjct: 61 TLIVIGPWLLKIFMEYMLSLYTSIPTLI 88
>gi|85711031|ref|ZP_01042091.1| Flagellar biosynthesis protein FliQ [Idiomarina baltica OS145]
gi|85694944|gb|EAQ32882.1| Flagellar biosynthesis protein FliQ [Idiomarina baltica OS145]
Length = 89
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 46/85 (54%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ L++ + A+ I+ A ++ ++ +G+++A QA T I E TL+F+P+++
Sbjct: 1 MSPEVFLDVFQEALKVIVIIVAFIIVPSLLVGLMVAVFQAATSINEQTLSFLPRLLVTLA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
+ + FI G + F + +RI
Sbjct: 61 VIGLGGHFIVGLLMDFTIEMYNRIP 85
>gi|323493115|ref|ZP_08098246.1| flagellar biosynthesis protein FliQ [Vibrio brasiliensis LMG
20546]
gi|323312586|gb|EGA65719.1| flagellar biosynthesis protein FliQ [Vibrio brasiliensis LMG
20546]
Length = 89
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 44/88 (50%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + + A+W I++ A ++ + +G+ IA QA TQI E TL+F+P+++ +
Sbjct: 1 MTPEMTVSLFSNAVWLIITMVAVLVVPGLIVGLGIAIFQAATQINEQTLSFLPRLLVTLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+I + ++ +I + I +
Sbjct: 61 MVIFAGHWMLRKIMELFDYLFHNIPGMI 88
>gi|163800127|ref|ZP_02194028.1| isopentenyl pyrophosphate isomerase [Vibrio sp. AND4]
gi|159175570|gb|EDP60364.1| isopentenyl pyrophosphate isomerase [Vibrio sp. AND4]
Length = 89
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 44/88 (50%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + + A+W I+S A ++ + +G+ IA QA TQI E TL+F+P+++ +
Sbjct: 1 MTPELTVTLFSDAVWLIISMVAVLVVPGLIVGLCIAVFQAATQINEQTLSFLPRLLVTLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+I + ++ +I + I +
Sbjct: 61 MVIFAGHWMLRKIMELFDFLFHNIPGMI 88
>gi|33596844|ref|NP_884487.1| putative type III secretion protein [Bordetella parapertussis
12822]
gi|33600618|ref|NP_888178.1| putative type III secretion protein [Bordetella bronchiseptica
RB50]
gi|33568217|emb|CAE32130.1| putative type III secretion protein [Bordetella bronchiseptica
RB50]
gi|33573545|emb|CAE37536.1| putative type III secretion protein [Bordetella parapertussis]
Length = 91
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/82 (39%), Positives = 49/82 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M D++ A++ +L S P + A +G L + LQALTQ+QE TL+F K+IAVF
Sbjct: 4 MQTQDLVSFMTQALYLVLWLSLPPIAVAAIVGTLFSLLQALTQVQEQTLSFAVKLIAVFA 63
Query: 61 TLIISAPFIGGQISSFVTLVLS 82
TL+++A +I +I +F V
Sbjct: 64 TLMLAARWISAEIYNFTIAVFD 85
>gi|222112239|ref|YP_002554503.1| flagellar biosynthetic protein fliq [Acidovorax ebreus TPSY]
gi|221731683|gb|ACM34503.1| flagellar biosynthetic protein FliQ [Acidovorax ebreus TPSY]
Length = 89
Score = 59.5 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/86 (37%), Positives = 48/86 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M VL + R A+ +L S PVL M +G+L++ QA+TQI E TL FVPK+IA +
Sbjct: 1 MTSQFVLTMGRDALTLLLMISMPVLGVVMAVGLLVSIFQAVTQIHEATLAFVPKLIAAVV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
I+ P++ + F+ + I S
Sbjct: 61 VFAIAGPWMLTTLVDFLRRTIEAIPS 86
>gi|91223556|ref|ZP_01258821.1| flagellar biosynthesis protein Q [Vibrio alginolyticus 12G01]
gi|269965692|ref|ZP_06179805.1| flagellar biosynthesis protein [Vibrio alginolyticus 40B]
gi|91191642|gb|EAS77906.1| flagellar biosynthesis protein Q [Vibrio alginolyticus 12G01]
gi|269829760|gb|EEZ83996.1| flagellar biosynthesis protein [Vibrio alginolyticus 40B]
Length = 89
Score = 59.5 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 47/88 (53%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +E+ R A+W +L ++ ++ +G+++A QA T I E TL+F+P++I +
Sbjct: 1 MTPEMFVELFREALWMVLIMVCAIIIPSLLIGLVVAIFQAATSINEQTLSFLPRLIVTLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L++ ++ + + ++ R+ L
Sbjct: 61 ALMLFGHWMTQMLMEYFYGLIERLPQVL 88
>gi|292669766|ref|ZP_06603192.1| flagellar biosynthetic protein FliQ [Selenomonas noxia ATCC
43541]
gi|292648563|gb|EFF66535.1| flagellar biosynthetic protein FliQ [Selenomonas noxia ATCC
43541]
Length = 89
Score = 59.5 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 34/88 (38%), Positives = 55/88 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ V+++A+ A+ +L SAP+L + +G+L+A QA T IQE TL F+PKIIAVF+
Sbjct: 1 MSGDLVIQLAQEALMIVLLVSAPMLGLGLIVGLLVAVFQATTSIQEQTLAFIPKIIAVFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
++I P++ + +VT V + L
Sbjct: 61 AILIFGPWMLRIMVEYVTNVFVNLPQYL 88
>gi|91223204|ref|ZP_01258470.1| flagellar biosynthetic protein [Vibrio alginolyticus 12G01]
gi|153831770|ref|ZP_01984437.1| flagellar biosynthetic protein FliQ [Vibrio harveyi HY01]
gi|156976195|ref|YP_001447101.1| flagellar biosynthesis pathway, component FliQ [Vibrio harveyi
ATCC BAA-1116]
gi|254228805|ref|ZP_04922228.1| flagellar biosynthetic protein FliQ [Vibrio sp. Ex25]
gi|262396476|ref|YP_003288329.1| flagellar biosynthesis protein FliQ [Vibrio sp. Ex25]
gi|269960156|ref|ZP_06174532.1| Flagellar biosynthetic protein fliQ [Vibrio harveyi 1DA3]
gi|269967107|ref|ZP_06181174.1| Flagellar biosynthetic protein fliQ [Vibrio alginolyticus 40B]
gi|91192017|gb|EAS78280.1| flagellar biosynthetic protein [Vibrio alginolyticus 12G01]
gi|148872280|gb|EDL71097.1| flagellar biosynthetic protein FliQ [Vibrio harveyi HY01]
gi|151938752|gb|EDN57587.1| flagellar biosynthetic protein FliQ [Vibrio sp. Ex25]
gi|156527789|gb|ABU72874.1| hypothetical protein VIBHAR_04966 [Vibrio harveyi ATCC BAA-1116]
gi|262340070|gb|ACY53864.1| flagellar biosynthesis protein FliQ [Vibrio sp. Ex25]
gi|269828244|gb|EEZ82511.1| Flagellar biosynthetic protein fliQ [Vibrio alginolyticus 40B]
gi|269835127|gb|EEZ89210.1| Flagellar biosynthetic protein fliQ [Vibrio harveyi 1DA3]
Length = 89
Score = 59.5 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 43/88 (48%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + + A+W I+ A ++ + +G+ IA QA TQI E TL+F+P+++ +
Sbjct: 1 MTPELTVTLFSDAVWLIILMVAVLVVPGLIVGLCIAVFQAATQINEQTLSFLPRLLVTLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+I + ++ +I + I +
Sbjct: 61 MVIFAGHWMLRKIMELFDFLFHNIPGMI 88
>gi|330947077|gb|EGH47859.1| flagellar biosynthesis protein FliQ [Pseudomonas syringae pv.
pisi str. 1704B]
Length = 89
Score = 59.5 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 49/88 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +++ R A+W A ++ ++ G+L+A QA TQI E TL+F+P+++ + I
Sbjct: 1 MTPEVAVDLFREALWLTTVLVAILVVPSLLCGLLVAMFQAATQINEQTLSFLPRLLVMLI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
TLI+ P++ ++ + + I + +
Sbjct: 61 TLIVIGPWLLKIFMEYMLSLYTSIPTLI 88
>gi|317121830|ref|YP_004101833.1| flagellar biosynthetic protein FliQ [Thermaerobacter marianensis
DSM 12885]
gi|315591810|gb|ADU51106.1| flagellar biosynthetic protein FliQ [Thermaerobacter marianensis
DSM 12885]
Length = 89
Score = 59.5 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 51/88 (57%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +A VL + R A+WT L +APVL + +G++++ LQA TQ+ E TL FVPKI+A
Sbjct: 1 MTDAMVLTVGREALWTGLLVAAPVLVLTVLVGVVVSVLQAATQVTEQTLVFVPKILAAAA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L++ P++ + + + I L
Sbjct: 61 ALLLFGPWMLATLVRYTVQLYQSIPGVL 88
>gi|220934505|ref|YP_002513404.1| flagellar biosynthetic protein FliQ [Thioalkalivibrio sp.
HL-EbGR7]
gi|219995815|gb|ACL72417.1| flagellar biosynthetic protein FliQ [Thioalkalivibrio sp.
HL-EbGR7]
Length = 89
Score = 59.5 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 54/88 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+++ + A+ I+ SAP+L +A+ +G+ I +QA TQIQE+TL+F+PK++ +F
Sbjct: 1 MTPETVVDLGQQALMVIVLLSAPMLLAALAIGLAIGMIQAATQIQEMTLSFIPKLLGMFA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L+I+ ++ + + + I + +
Sbjct: 61 ALLITGHWMLDLVVDYTLRLYDSIPALI 88
>gi|94986991|ref|YP_594924.1| translocation protein in type III secretion [Lawsonia
intracellularis PHE/MN1-00]
gi|94731240|emb|CAJ54603.1| probable translocation protein in type III secretion [Lawsonia
intracellularis PHE/MN1-00]
Length = 86
Score = 59.5 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 45/81 (55%)
Query: 3 EADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITL 62
E + A++ +L S P + A +G+ ++ +QA+TQ+QE TL F K++AV +TL
Sbjct: 2 ETTTMTYTAKALYLVLVLSMPPILVASLVGLFVSLIQAITQLQEQTLAFGIKLLAVVLTL 61
Query: 63 IISAPFIGGQISSFVTLVLSR 83
++ G++ + + +R
Sbjct: 62 FFMGGWLTGELYRYAEEIFNR 82
>gi|171319606|ref|ZP_02908702.1| export protein FliQ family 3 [Burkholderia ambifaria MEX-5]
gi|171095177|gb|EDT40179.1| export protein FliQ family 3 [Burkholderia ambifaria MEX-5]
Length = 88
Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 53/86 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E+ L++ +W + PVL + + G+L++ Q +TQ+QE++L++VPK++ I
Sbjct: 1 MSESQALQMLSQLIWNSFLIAGPVLAATLIAGLLVSIFQVVTQLQEMSLSYVPKLVVAGI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
L+ AP++ G+++ F T + + I
Sbjct: 61 VLVTLAPWMLGRLTGFTTTLFAGIAD 86
>gi|34498580|ref|NP_902795.1| flagellar biosynthetic protein FliQ [Chromobacterium violaceum
ATCC 12472]
gi|34104434|gb|AAQ60792.1| flagellar biosynthetic protein FliQ [Chromobacterium violaceum
ATCC 12472]
Length = 89
Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 59/86 (68%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ V+ I + A++ ++ SAPVL +++ +G+L++ LQA TQI E+TLTF+PK++A+F+
Sbjct: 1 MSPELVISIVQNALYILIIVSAPVLLTSLLVGLLVSVLQAATQINEMTLTFIPKLLAMFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
L+++ P++ + + T + I +
Sbjct: 61 VLVLAGPWMLNTLIEYTTRLFQSIPN 86
>gi|330828810|ref|YP_004391762.1| flagellar biosynthetic protein FliQ [Aeromonas veronii B565]
gi|328803946|gb|AEB49145.1| Flagellar biosynthetic protein FliQ [Aeromonas veronii B565]
Length = 89
Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 48/85 (56%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ +++ R A+W + + V+ ++ +G+++A QA T I E TL+F+P++I +
Sbjct: 1 MSPETFVDVFREALWLVNIMVSAVILPSLAIGLVVAIFQAATSINEQTLSFLPRLIVTLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
L I A + + F L++++I
Sbjct: 61 ALGIGAHWGMQSLMDFFILMVNQIP 85
>gi|332297775|ref|YP_004439697.1| flagellar biosynthetic protein FliQ [Treponema brennaborense DSM
12168]
gi|332180878|gb|AEE16566.1| flagellar biosynthetic protein FliQ [Treponema brennaborense DSM
12168]
Length = 89
Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ D++ + R ++ IL APVL +A+ +G+++A QA T IQE TLTF PK +
Sbjct: 1 MSLGDIVTLIRDGIFQILILVAPVLGAALIIGLIVAIFQATTSIQEQTLTFAPKFFVILG 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
+ + ++ + + + I
Sbjct: 61 VIALLGGWMFTMLRGYTVNLFEMIP 85
>gi|152990382|ref|YP_001356104.1| flagellar biosynthetic protein FliQ [Nitratiruptor sp. SB155-2]
gi|151422243|dbj|BAF69747.1| flagellar biosynthetic protein FliQ [Nitratiruptor sp. SB155-2]
Length = 89
Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 44/88 (50%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ + + + S P L +A +G++I+ QA TQIQE+TLTF+PKIIA
Sbjct: 1 MSVDQAITLVEQMLKITALVSLPPLATAFGVGLIISIFQAATQIQEMTLTFIPKIIATVA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
LII ++ + + + I +
Sbjct: 61 ALIIFGSWMFVTLIDYYKSIFDSITRLI 88
>gi|187919909|ref|YP_001888940.1| type III secretion protein, HrpO family [Burkholderia
phytofirmans PsJN]
gi|187718347|gb|ACD19570.1| type III secretion protein, HrpO family [Burkholderia
phytofirmans PsJN]
Length = 91
Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 44/80 (55%)
Query: 8 EIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAP 67
++ A+ + S P L A +G+++ LQ++TQIQ+ L + KII V + +I++ P
Sbjct: 9 SLSSDALLLVFWLSLPALAVATAIGVVVGLLQSVTQIQDQALPYGAKIIGVGLVMIVAIP 68
Query: 68 FIGGQISSFVTLVLSRIQSS 87
+ ++S F+ S I +
Sbjct: 69 WGNSEVSRFLDHAFSYIAAG 88
>gi|262393599|ref|YP_003285453.1| flagellar biosynthesis protein FliQ [Vibrio sp. Ex25]
gi|262337193|gb|ACY50988.1| flagellar biosynthesis protein FliQ [Vibrio sp. Ex25]
Length = 89
Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 47/88 (53%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +E+ R A+W +L ++ ++ +G+++A QA T I E TL+F+P++I +
Sbjct: 1 MTPEMFVELFREALWMVLIMVCAIIIPSLLIGLIVAIFQAATSINEQTLSFLPRLIVTLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L++ ++ + + ++ R+ L
Sbjct: 61 ALMLFGHWMTQMLMEYFYGLIERLPQVL 88
>gi|302185376|ref|ZP_07262049.1| flagellar biosynthesis protein FliQ [Pseudomonas syringae pv.
syringae 642]
Length = 89
Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 48/88 (54%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +++ R A+W A ++ ++ G+L+A QA TQI E TL+F+P+++ + I
Sbjct: 1 MTPEVAVDLFREALWLTTVLVAILVVPSLLCGLLVAMFQAATQINEQTLSFLPRLLVMLI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
TLI P++ ++ + + I + +
Sbjct: 61 TLIAIGPWLLKIFMEYMLSLYTSIPTLI 88
>gi|206890429|ref|YP_002249865.1| flagellar biosynthetic protein FliQ [Thermodesulfovibrio
yellowstonii DSM 11347]
gi|206742367|gb|ACI21424.1| flagellar biosynthetic protein FliQ [Thermodesulfovibrio
yellowstonii DSM 11347]
Length = 89
Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 53/85 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + I++ TIL PVL ++ +G++I QA+TQ+QE+T++FVPK+IAVF+
Sbjct: 1 MTVEFLNYISKQTFETILLVGGPVLLVSLLVGLIIGLFQAITQLQEMTISFVPKVIAVFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
TL+++ P++ ++ F + +
Sbjct: 61 TLLLTIPWMVNIMTKFTRGIFENLP 85
>gi|313901465|ref|ZP_07834921.1| flagellar biosynthetic protein FliQ [Thermaerobacter subterraneus
DSM 13965]
gi|313468271|gb|EFR63729.1| flagellar biosynthetic protein FliQ [Thermaerobacter subterraneus
DSM 13965]
Length = 90
Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 50/88 (56%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +A VL + R A+WT L +APVL + +G+ I+ LQA TQ+ E TL FVPKI+A
Sbjct: 2 MTDAMVLTVGREALWTGLLVAAPVLLLTVAVGVAISILQAATQVTEQTLVFVPKILAAAA 61
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L++ P++ + + + I L
Sbjct: 62 ALLLFGPWMLATLVRYTVQLYESIPGVL 89
>gi|260767959|ref|ZP_05876893.1| flagellar biosynthesis protein FliQ [Vibrio furnissii CIP 102972]
gi|260615989|gb|EEX41174.1| flagellar biosynthesis protein FliQ [Vibrio furnissii CIP 102972]
gi|315179663|gb|ADT86577.1| flagellar biosynthetic protein FliQ [Vibrio furnissii NCTC 11218]
Length = 89
Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 42/88 (47%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + A+W ++ ++ + +G+ IA QA TQI E TL+F+P+++ +
Sbjct: 1 MTPETVVTLISNAVWMVILIVGVLVVPGLIVGLGIAIFQAATQINEQTLSFLPRLMVTLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+I + ++ + + I +
Sbjct: 61 MVIFAGHWMLRKFMELFDFLFHNIPGMI 88
>gi|307546959|ref|YP_003899438.1| flagellar biosynthesis protein FliQ [Halomonas elongata DSM 2581]
gi|307218983|emb|CBV44253.1| flagellar biosynthesis protein FliQ [Halomonas elongata DSM 2581]
Length = 89
Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 53/88 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ +A M L + P+L +A+ G+L++ QA TQI E+TL+F+PKI+AVF
Sbjct: 1 MTPETVMSLAYQGMRVTLLLAGPLLLTALLTGLLVSLFQAATQINEMTLSFIPKILAVFT 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L+++ P++ I+ F +L I + +
Sbjct: 61 VLVLAGPWLLKLITDFTRELLGNIPTLI 88
>gi|221639478|ref|YP_002525740.1| Flagellar protein FliQ [Rhodobacter sphaeroides KD131]
gi|221160259|gb|ACM01239.1| Flagellar protein FliQ [Rhodobacter sphaeroides KD131]
Length = 89
Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 50/86 (58%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ +E R A W IL ++ PVL A+ +G+ I LQA T I E TL+FVPK+ V +
Sbjct: 2 MDFDGSIEHLRLAYWNILLTAGPVLGVALAVGLFIGILQAATSINESTLSFVPKLAIVLL 61
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
T+ +++ F+ +++ + V I +
Sbjct: 62 TMALASSFMLTRMTDYFAFVFETIAT 87
>gi|327394276|dbj|BAK11698.1| flagellar biosynthetic protein FliQ [Pantoea ananatis AJ13355]
Length = 108
Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/85 (38%), Positives = 52/85 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + + AM L +AP+L +A+ G+L++ LQA TQI E TL+F+PKIIAV
Sbjct: 20 MTPESVMVMGQEAMRVALLLAAPMLLAALVSGLLVSLLQAATQINEQTLSFIPKIIAVAT 79
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
T II+ P++ + ++ V S +
Sbjct: 80 TGIIAGPWMLNVLLDYIRTVFSNLP 104
>gi|115523573|ref|YP_780484.1| flagellar biosynthesis protein FliQ [Rhodopseudomonas palustris
BisA53]
gi|115517520|gb|ABJ05504.1| flagellar biosynthetic protein FliQ [Rhodopseudomonas palustris
BisA53]
Length = 87
Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 37/87 (42%), Positives = 61/87 (70%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +VL+IAR A+WTI+ SAP++ + +G+ ++ +QALTQIQE TL FVPKI+++F+
Sbjct: 1 MTGMEVLDIARDAVWTIVLVSAPLMVVGLVVGVAVSLVQALTQIQEQTLVFVPKILSIFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
T +++ PF+ + S++ + SRI
Sbjct: 61 TFVLALPFMADAMHSYMMRISSRIIGG 87
>gi|329849684|ref|ZP_08264530.1| flagellar biosynthetic protein FliQ [Asticcacaulis biprosthecum
C19]
gi|328841595|gb|EGF91165.1| flagellar biosynthetic protein FliQ [Asticcacaulis biprosthecum
C19]
Length = 87
Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/86 (37%), Positives = 54/86 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ A+VL + R A+W + P+L + +G+ I QALTQIQE TL + PKII +F+
Sbjct: 1 MSGAEVLGVGRDAIWLTIQLCTPILLVGLVVGVAIGLFQALTQIQEATLIYAPKIICIFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
L++ P +G ++ F+ V+++I +
Sbjct: 61 ALLLLLPLMGTLLAGFMHEVVNKIAA 86
>gi|289548902|ref|YP_003473890.1| flagellar biosynthetic protein FliQ [Thermocrinis albus DSM
14484]
gi|289182519|gb|ADC89763.1| flagellar biosynthetic protein FliQ [Thermocrinis albus DSM
14484]
Length = 85
Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 52/81 (64%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
VL + + A+ +L SAPVL +G+L++ LQA TQIQE+TL+++PKI+A +IT++
Sbjct: 1 MVLTVGQRALELMLLLSAPVLLVTFLVGLLVSLLQAATQIQEMTLSYIPKILAAYITVLF 60
Query: 65 SAPFIGGQISSFVTLVLSRIQ 85
++ ++ + +++ I
Sbjct: 61 LGGWMMSKLIDYTKDIITSIP 81
>gi|330972450|gb|EGH72516.1| flagellar biosynthesis protein FliQ [Pseudomonas syringae pv.
aceris str. M302273PT]
Length = 89
Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 48/86 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +++ R A+W A ++ ++ G+L+A QA TQI E TL+F+P+++ + I
Sbjct: 1 MTPEVAVDLFREALWLTTVLVAILVVPSLLCGLLVAMFQAATQINEQTLSFLPRLLVMLI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
TLI+ P++ ++ + + I +
Sbjct: 61 TLIVIGPWLLKIFMEYMLSLYTSIPT 86
>gi|300717242|ref|YP_003742045.1| flagellar biosynthesis protein [Erwinia billingiae Eb661]
gi|299063078|emb|CAX60198.1| Flagellar biosynthesis protein [Erwinia billingiae Eb661]
Length = 89
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 53/85 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ I AM L+ +AP+L +A+ G++I+ LQA TQI E TL+F+PKI+AV
Sbjct: 1 MTPESVMVIGHDAMQVALAVAAPLLLAALVSGLIISLLQAATQINEQTLSFIPKILAVVA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
T++I+ P++ + ++ + + +
Sbjct: 61 TMVIAGPWMLNLVLDYMRTLFTNLP 85
>gi|304392487|ref|ZP_07374427.1| flagellar biosynthetic protein FliQ [Ahrensia sp. R2A130]
gi|303295117|gb|EFL89477.1| flagellar biosynthetic protein FliQ [Ahrensia sp. R2A130]
Length = 88
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 44/88 (50%), Positives = 63/88 (71%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEAD L++ + A+W I+ +SAP + +AM +GI IA LQALTQ+QEVTLTFVPKI+A+ +
Sbjct: 1 MNEADALQLVQQAIWAIIVASAPAVTAAMVVGIAIALLQALTQVQEVTLTFVPKIMAIML 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L++ A F+G Q+ S T + I+
Sbjct: 61 ALLLGATFMGAQLGSLTTTIFDSIERGF 88
>gi|90406808|ref|ZP_01215000.1| flagellar biosynthesis protein [Psychromonas sp. CNPT3]
gi|90312045|gb|EAS40138.1| flagellar biosynthesis protein [Psychromonas sp. CNPT3]
Length = 89
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 45/85 (52%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + I R A+WT+L + + ++ +G+++A QA T I E TL+F+P+++
Sbjct: 1 MEPEVFVNIFRQALWTVLLLVSAAIIPSLLVGLVVAVFQAATSINEQTLSFLPRLMMTLT 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
L A + G++ F ++ +I
Sbjct: 61 ALAFGAHWGFGKLMEFFISMIDQIP 85
>gi|238916765|ref|YP_002930282.1| hypothetical protein EUBELI_00827 [Eubacterium eligens ATCC
27750]
gi|238872125|gb|ACR71835.1| Hypothetical protein EUBELI_00827 [Eubacterium eligens ATCC
27750]
Length = 88
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 55/88 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ V+ IAR +W I+ +S P+L +M +G++I+ Q LT IQE TLTFVPK++A+ I
Sbjct: 1 MDAGQVVTIARQTIWVIVKTSVPLLLVSMIVGLIISLFQTLTSIQEQTLTFVPKLLAIMI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L++ +I +I SF+ ++ +
Sbjct: 61 ALMLMGNWILNEIVSFMQMLWGSFGQYV 88
>gi|260779324|ref|ZP_05888216.1| flagellar biosynthesis protein FliQ [Vibrio coralliilyticus ATCC
BAA-450]
gi|260605488|gb|EEX31783.1| flagellar biosynthesis protein FliQ [Vibrio coralliilyticus ATCC
BAA-450]
Length = 89
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 44/88 (50%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + + A+W I++ A ++ + +G+ IA QA TQI E TL+F+P+++ +
Sbjct: 1 MTPEMTVTLFSNAVWLIITMVAVLVVPGLIVGLGIAIFQAATQINEQTLSFLPRLLVTLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+I + ++ +I + I +
Sbjct: 61 MVIFAGHWMLRKIMELFDYLFHNIPGMI 88
>gi|330826720|ref|YP_004390023.1| flagellar biosynthetic protein FliQ [Alicycliphilus denitrificans
K601]
gi|329312092|gb|AEB86507.1| flagellar biosynthetic protein FliQ [Alicycliphilus denitrificans
K601]
Length = 89
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 48/86 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M VL + R A+ +L + PVL M +G+L++ QA+TQI E TL FVPK+IA +
Sbjct: 1 MTAQFVLTMGRDALTLLLMIALPVLGVVMAVGLLVSIFQAVTQIHEATLAFVPKLIAAMV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
I+ P++ + F+ + I S
Sbjct: 61 VFAIAGPWMISTLVDFLRRTIESIPS 86
>gi|84514805|ref|ZP_01002168.1| Flagellar protein FliQ [Loktanella vestfoldensis SKA53]
gi|84510964|gb|EAQ07418.1| Flagellar protein FliQ [Loktanella vestfoldensis SKA53]
Length = 88
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 49/84 (58%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +E RAA W I+ +S P+L A+ +G++I LQA T I E+TL+FVPK++ V
Sbjct: 1 MEFDSNIESLRAAFWQIIIASGPILGVALTVGLIIGILQAATSINEMTLSFVPKLVIVLA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
+ + F+ +++ + + +I
Sbjct: 61 AMAALSSFMMQEMTDYFASIFEQI 84
>gi|149200774|ref|ZP_01877749.1| Flagellar protein FliQ [Roseovarius sp. TM1035]
gi|149145107|gb|EDM33133.1| Flagellar protein FliQ [Roseovarius sp. TM1035]
Length = 88
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 50/86 (58%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ +E R A W IL ++ PVL A+ +G++I LQA T I E TL+FVPK+ V +
Sbjct: 1 MDFDANIEHLRMAYWNILLTAGPVLLVALAVGLVIGILQAATSINEATLSFVPKMAIVIV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
T+ + + F+ ++ + T V I +
Sbjct: 61 TMALMSGFMLSTMTDYFTHVFDAIAT 86
>gi|71736593|ref|YP_273543.1| type III secretion component protein HrcS [Pseudomonas syringae
pv. phaseolicola 1448A]
gi|257487235|ref|ZP_05641276.1| type III secretion component protein HrcS [Pseudomonas syringae
pv. tabaci ATCC 11528]
gi|289623684|ref|ZP_06456638.1| type III secretion component protein HrcS [Pseudomonas syringae
pv. aesculi str. NCPPB3681]
gi|289647642|ref|ZP_06478985.1| type III secretion component protein HrcS [Pseudomonas syringae
pv. aesculi str. 2250]
gi|298485948|ref|ZP_07004023.1| type III secretion system integral membrane protein [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
gi|3282782|gb|AAC25070.1| HrcS [Pseudomonas syringae pv. phaseolicola]
gi|42562003|gb|AAS20445.1| HrcS [Pseudomonas syringae pv. phaseolicola]
gi|71557146|gb|AAZ36357.1| type III secretion component protein HrcS [Pseudomonas syringae
pv. phaseolicola 1448A]
gi|238577786|gb|ACR46697.1| HrcS [Pseudomonas syringae pv. tabaci]
gi|298159534|gb|EFI00580.1| type III secretion system integral membrane protein [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
gi|320322956|gb|EFW79046.1| type III secretion component protein HrcS [Pseudomonas syringae
pv. glycinea str. B076]
gi|320329921|gb|EFW85909.1| type III secretion component protein HrcS [Pseudomonas syringae
pv. glycinea str. race 4]
gi|330871288|gb|EGH05997.1| type III secretion component protein HrcS [Pseudomonas syringae
pv. aesculi str. 0893_23]
gi|330874621|gb|EGH08770.1| type III secretion component protein HrcS [Pseudomonas syringae
pv. glycinea str. race 4]
gi|330894461|gb|EGH27122.1| type III secretion component protein HrcS [Pseudomonas syringae
pv. mori str. 301020]
gi|330984963|gb|EGH83066.1| type III secretion component protein HrcS [Pseudomonas syringae
pv. lachrymans str. M301315]
gi|331009151|gb|EGH89207.1| type III secretion component protein HrcS [Pseudomonas syringae
pv. tabaci ATCC 11528]
Length = 88
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 49/83 (59%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
+ L + + M+ ++ +AP L A+ +G+L + LQAL QIQ+ TL F K+ AV +TL +
Sbjct: 2 EALALFKQGMFLVVILTAPPLGVAVLVGVLTSLLQALMQIQDQTLPFGIKLGAVGLTLAM 61
Query: 65 SAPFIGGQISSFVTLVLSRIQSS 87
+ +IG ++ F+ + I S
Sbjct: 62 TGRWIGVELIQFINMAFDLIARS 84
>gi|33593239|ref|NP_880883.1| putative type III secretion protein [Bordetella pertussis Tohama
I]
gi|29603235|emb|CAC79580.1| bscS [Bordetella pertussis Tohama I]
gi|33563614|emb|CAE42515.1| putative type III secretion protein [Bordetella pertussis Tohama
I]
gi|332382648|gb|AEE67495.1| putative type III secretion protein [Bordetella pertussis CS]
Length = 88
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/82 (37%), Positives = 48/82 (58%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M D++ A++ +L S P + +G L + LQALTQ+QE TL+F K+IAVF
Sbjct: 1 MQTQDLVSFMTQALYLVLWLSLPPIAVVAIVGTLFSLLQALTQVQEQTLSFAVKLIAVFA 60
Query: 61 TLIISAPFIGGQISSFVTLVLS 82
TL+++A +I +I +F V
Sbjct: 61 TLMLAARWISAEIYNFTIAVFD 82
>gi|300311364|ref|YP_003775456.1| flagellar biosynthesis protein FliQ [Herbaspirillum seropedicae
SmR1]
gi|300074149|gb|ADJ63548.1| flagellar biosynthetic FliQ protein [Herbaspirillum seropedicae
SmR1]
Length = 89
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 54/88 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + R AM L +AP+L +A+ +G+L++ QA TQI E TL F+PK++ VF+
Sbjct: 1 MTPESVMTMGRQAMEITLLIAAPMLLTALLIGLLVSIFQAATQINEQTLAFIPKLLGVFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+I++ P+I I ++ + S I + +
Sbjct: 61 AMIVAGPWILTVIVDYMHTMFSGIPAMV 88
>gi|89897882|ref|YP_514992.1| type III secretion flagellar biosynthesis inner membrane protein
[Chlamydophila felis Fe/C-56]
gi|89331254|dbj|BAE80847.1| type III secretion flagellar biosynthesis inner membrane protein
[Chlamydophila felis Fe/C-56]
Length = 94
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 44/80 (55%)
Query: 4 ADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLI 63
+ + E + ++ IL SAP + A +GI++A QA TQIQE T F K++ +F TLI
Sbjct: 10 SVLFEYSYQSLLLILIISAPPIILASIVGIVVAIFQAATQIQEQTFAFAIKLVVIFGTLI 69
Query: 64 ISAPFIGGQISSFVTLVLSR 83
IS ++ I F + +
Sbjct: 70 ISGGWLSNMIFRFASQIFQN 89
>gi|260222419|emb|CBA31964.1| Flagellar biosynthetic protein fliQ [Curvibacter putative
symbiont of Hydra magnipapillata]
Length = 89
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 55/88 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN VL + + A+ +L SAPVL +A+ +G+L++ QA+TQI E TL FVPK++AV
Sbjct: 1 MNAQTVLTMGQEALLMLLMVSAPVLGAALVVGLLVSLFQAVTQIHEATLAFVPKLLAVIA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
I+ P++ + ++ +L I +S+
Sbjct: 61 VFAIAGPWMLTMLVEYIRRMLEAIPASV 88
>gi|238787478|ref|ZP_04631276.1| Secretion system apparatus protein ssaS [Yersinia frederiksenii
ATCC 33641]
gi|238724265|gb|EEQ15907.1| Secretion system apparatus protein ssaS [Yersinia frederiksenii
ATCC 33641]
Length = 89
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 54/86 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ A V+ +A +W +L S PV+ A +G++++ LQALTQIQ+ TL F+ K++AV
Sbjct: 1 MSNAIVVHLATQLLWIVLLLSMPVVLVASVVGLVVSLLQALTQIQDQTLQFLIKLLAVSA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
TL+++ ++G + ++ +I S
Sbjct: 61 TLLVTYHWMGSTLLNYTQQTFLQITS 86
>gi|237753285|ref|ZP_04583765.1| flagellar biosynthetic protein [Helicobacter winghamensis ATCC
BAA-430]
gi|229375552|gb|EEO25643.1| flagellar biosynthetic protein [Helicobacter winghamensis ATCC
BAA-430]
Length = 88
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 51/86 (59%)
Query: 3 EADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITL 62
EA ++ +A L S P+L + +G++I+ QA TQI E+TLTFVPKI+AV + +
Sbjct: 2 EAQLMNLAIETYKITLILSLPMLLVGLVVGLMISIFQATTQINEMTLTFVPKILAVIVVI 61
Query: 63 IISAPFIGGQISSFVTLVLSRIQSSL 88
I + P++ + F T + + + + L
Sbjct: 62 IFTMPWMLNMLIDFTTRIFNMMPTFL 87
>gi|189426338|ref|YP_001953515.1| flagellar biosynthetic protein FliQ [Geobacter lovleyi SZ]
gi|189422597|gb|ACD96995.1| flagellar biosynthetic protein FliQ [Geobacter lovleyi SZ]
Length = 89
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 49/85 (57%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+++AR + L SAP+L ++ +G+ I+ QA+T I E TL F PKI+AV +
Sbjct: 1 MTPELVVQLARRSFEATLLLSAPLLLFSLVVGLAISVFQAVTSINEATLAFAPKIVAVMV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
+II P++ +S F V + I
Sbjct: 61 AVIIFFPWMMSYMSDFTREVYALIA 85
>gi|118588698|ref|ZP_01546106.1| flagellar biosynthesis protein Q [Stappia aggregata IAM 12614]
gi|118438684|gb|EAV45317.1| flagellar biosynthesis protein Q [Stappia aggregata IAM 12614]
Length = 88
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 37/84 (44%), Positives = 60/84 (71%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +VL++AR +WT++ + PV+ + +G++IA QALTQIQE+TL FVPKI+A+F+
Sbjct: 1 MTGGEVLDLAREGVWTMILVAGPVMIVGLLVGVVIALFQALTQIQEMTLVFVPKILAIFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
T++IS PF+ + +F++ V I
Sbjct: 61 TILISLPFMSQVLEAFMSRVAEMI 84
>gi|6708105|gb|AAF25802.1|AF172245_4 BscS [Bordetella bronchiseptica]
Length = 88
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/82 (40%), Positives = 50/82 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M D++ A++ +L S P + A +G L + LQALTQ+QE TL+F K+IAVF
Sbjct: 1 MQTQDLVSFMTQALYLVLWLSLPPIAVAAIVGTLFSLLQALTQVQEQTLSFAVKLIAVFA 60
Query: 61 TLIISAPFIGGQISSFVTLVLS 82
TL+++A +I +I +F VL
Sbjct: 61 TLMLAARWISAEIYNFTIAVLD 82
>gi|317492419|ref|ZP_07950848.1| flagellar biosynthetic protein FliQ [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316919758|gb|EFV41088.1| flagellar biosynthetic protein FliQ [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 89
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 55/86 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + AM L+ + P+L +A+ G++I+ LQA TQI E+TL+F+PKI+AVF
Sbjct: 1 MTPESVMALGYQAMKVGLALATPLLLAALISGLVISLLQAATQINEMTLSFIPKILAVFA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
T++I+ P++ + ++ + + I S
Sbjct: 61 TMVIAGPWMLSLLLDYMRTLFTSIPS 86
>gi|253990105|ref|YP_003041461.1| flagellar biosynthesis protein FliQ [Photorhabdus asymbiotica
subsp. asymbiotica ATCC 43949]
gi|253781555|emb|CAQ84718.1| flagellar biosynthetic protein fliq [Photorhabdus asymbiotica]
Length = 89
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 55/86 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + AM L+ +AP+L SA+ G++++ LQA TQ+ E+TL+F+PKI+AVF+
Sbjct: 1 MTPESVMALGTEAMEVALALAAPLLLSALLCGLIVSLLQAATQVNEMTLSFIPKILAVFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
T +I+ P++ ++ + S I +
Sbjct: 61 TTVIAGPWMLNLFLDYMRELYSNIPA 86
>gi|221234066|ref|YP_002516502.1| flagellar biosynthesis protein FliQ [Caulobacter crescentus
NA1000]
gi|220963238|gb|ACL94594.1| flagellar biosynthesis protein FliQ [Caulobacter crescentus
NA1000]
Length = 88
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 38/86 (44%), Positives = 56/86 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M A+VL++ R A+W L APVL + +G++I QALTQIQE TL + PKI+A+FI
Sbjct: 2 MTGAEVLDVGRDAIWLTLQLCAPVLIVGLVVGVIIGLFQALTQIQEATLVYAPKIVAIFI 61
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
+L+I P +G +S F+ + +RI
Sbjct: 62 SLLIFLPLMGSLMSGFMRQIAARIAG 87
>gi|121608108|ref|YP_995915.1| flagellar biosynthetic protein FliQ [Verminephrobacter eiseniae
EF01-2]
gi|121552748|gb|ABM56897.1| flagellar biosynthetic protein FliQ [Verminephrobacter eiseniae
EF01-2]
Length = 89
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 51/88 (57%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M VL I R A+ +L S PVL + + +G++++ QA+TQI E TL FVPK+IA
Sbjct: 1 MTAQMVLTIGRDALSLLLMISMPVLAAVLAVGLIVSIFQAVTQIHEATLAFVPKLIAAMA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L ++ P++ G + F+ + I S +
Sbjct: 61 VLALAGPWMLGLLVDFIRRTIESIPSMI 88
>gi|330961234|gb|EGH61494.1| flagellar biosynthesis protein FliQ [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 89
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 48/88 (54%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +++ R A+W A ++ ++ G+L+A QA TQI E TL+F+P+++ + +
Sbjct: 1 MTPEVAVDLFREALWLTTVLVAILVVPSLLCGLLVAMFQAATQINEQTLSFLPRLLVMLV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
TLI P++ ++ + + I + +
Sbjct: 61 TLIAIGPWLLKIFMEYMLALYTSIPTLI 88
>gi|167467561|ref|ZP_02332265.1| type III secretion system protein [Yersinia pestis FV-1]
Length = 333
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 52/83 (62%)
Query: 4 ADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLI 63
A ++ +A +W +L S PV+ A +G++I+ +QALTQIQ+ TL F+ K++AV TL+
Sbjct: 248 AIIVHLATELLWLVLLLSLPVVVVASTVGLVISLVQALTQIQDQTLQFLIKLLAVSATLL 307
Query: 64 ISAPFIGGQISSFVTLVLSRIQS 86
++ ++G + ++ +I S
Sbjct: 308 MTYHWMGATLLNYTQQSFLQITS 330
>gi|15642121|ref|NP_231753.1| flagellar biosynthesis protein FliQ [Vibrio cholerae O1 biovar El
Tor str. N16961]
gi|121586789|ref|ZP_01676571.1| flagellar biosynthetic protein FliQ [Vibrio cholerae 2740-80]
gi|121727200|ref|ZP_01680367.1| flagellar biosynthetic protein FliQ [Vibrio cholerae V52]
gi|147674176|ref|YP_001217643.1| flagellar biosynthesis protein FliQ [Vibrio cholerae O395]
gi|153213236|ref|ZP_01948648.1| flagellar biosynthetic protein FliQ [Vibrio cholerae 1587]
gi|153803033|ref|ZP_01957619.1| flagellar biosynthetic protein FliQ [Vibrio cholerae MZO-3]
gi|153818983|ref|ZP_01971650.1| flagellar biosynthetic protein FliQ [Vibrio cholerae NCTC 8457]
gi|153822895|ref|ZP_01975562.1| flagellar biosynthetic protein FliQ [Vibrio cholerae B33]
gi|153825582|ref|ZP_01978249.1| flagellar biosynthetic protein FliQ [Vibrio cholerae MZO-2]
gi|153828603|ref|ZP_01981270.1| flagellar biosynthetic protein FliQ [Vibrio cholerae 623-39]
gi|227082247|ref|YP_002810798.1| flagellar biosynthetic protein FliQ [Vibrio cholerae M66-2]
gi|229507793|ref|ZP_04397298.1| flagellar biosynthesis protein FliQ [Vibrio cholerae BX 330286]
gi|229511970|ref|ZP_04401449.1| flagellar biosynthesis protein FliQ [Vibrio cholerae B33]
gi|229513773|ref|ZP_04403235.1| flagellar biosynthesis protein FliQ [Vibrio cholerae TMA 21]
gi|229519106|ref|ZP_04408549.1| flagellar biosynthesis protein FliQ [Vibrio cholerae RC9]
gi|229522075|ref|ZP_04411492.1| flagellar biosynthesis protein FliQ [Vibrio cholerae TM 11079-80]
gi|229528866|ref|ZP_04418256.1| flagellar biosynthesis protein FliQ [Vibrio cholerae 12129(1)]
gi|229607338|ref|YP_002877986.1| flagellar biosynthesis protein FliQ [Vibrio cholerae MJ-1236]
gi|254291358|ref|ZP_04962151.1| flagellar biosynthetic protein FliQ [Vibrio cholerae AM-19226]
gi|254849207|ref|ZP_05238557.1| flagellar biosynthesis protein FliQ [Vibrio cholerae MO10]
gi|255745139|ref|ZP_05419088.1| flagellar biosynthesis protein FliQ [Vibrio cholera CIRS 101]
gi|262153471|ref|ZP_06028601.1| flagellar biosynthesis protein FliQ [Vibrio cholerae INDRE 91/1]
gi|262167481|ref|ZP_06035187.1| flagellar biosynthesis protein FliQ [Vibrio cholerae RC27]
gi|262191371|ref|ZP_06049561.1| flagellar biosynthesis protein FliQ [Vibrio cholerae CT 5369-93]
gi|297582020|ref|ZP_06943939.1| flagellar biosynthetic protein FliQ [Vibrio cholerae RC385]
gi|298497856|ref|ZP_07007663.1| flagellar biosynthetic protein FliQ [Vibrio cholerae MAK 757]
gi|9656672|gb|AAF95267.1| flagellar biosynthetic protein FliQ [Vibrio cholerae O1 biovar El
Tor str. N16961]
gi|121548956|gb|EAX58995.1| flagellar biosynthetic protein FliQ [Vibrio cholerae 2740-80]
gi|121630445|gb|EAX62838.1| flagellar biosynthetic protein FliQ [Vibrio cholerae V52]
gi|124116036|gb|EAY34856.1| flagellar biosynthetic protein FliQ [Vibrio cholerae 1587]
gi|124121431|gb|EAY40174.1| flagellar biosynthetic protein FliQ [Vibrio cholerae MZO-3]
gi|126510478|gb|EAZ73072.1| flagellar biosynthetic protein FliQ [Vibrio cholerae NCTC 8457]
gi|126519591|gb|EAZ76814.1| flagellar biosynthetic protein FliQ [Vibrio cholerae B33]
gi|146316059|gb|ABQ20598.1| flagellar biosynthetic protein FliQ [Vibrio cholerae O395]
gi|148875874|gb|EDL74009.1| flagellar biosynthetic protein FliQ [Vibrio cholerae 623-39]
gi|149740733|gb|EDM54832.1| flagellar biosynthetic protein FliQ [Vibrio cholerae MZO-2]
gi|150422688|gb|EDN14642.1| flagellar biosynthetic protein FliQ [Vibrio cholerae AM-19226]
gi|227010135|gb|ACP06347.1| flagellar biosynthetic protein FliQ [Vibrio cholerae M66-2]
gi|227014018|gb|ACP10228.1| flagellar biosynthetic protein FliQ [Vibrio cholerae O395]
gi|229332640|gb|EEN98126.1| flagellar biosynthesis protein FliQ [Vibrio cholerae 12129(1)]
gi|229341000|gb|EEO06005.1| flagellar biosynthesis protein FliQ [Vibrio cholerae TM 11079-80]
gi|229343795|gb|EEO08770.1| flagellar biosynthesis protein FliQ [Vibrio cholerae RC9]
gi|229348954|gb|EEO13911.1| flagellar biosynthesis protein FliQ [Vibrio cholerae TMA 21]
gi|229351935|gb|EEO16876.1| flagellar biosynthesis protein FliQ [Vibrio cholerae B33]
gi|229355298|gb|EEO20219.1| flagellar biosynthesis protein FliQ [Vibrio cholerae BX 330286]
gi|229369993|gb|ACQ60416.1| flagellar biosynthesis protein FliQ [Vibrio cholerae MJ-1236]
gi|254844912|gb|EET23326.1| flagellar biosynthesis protein FliQ [Vibrio cholerae MO10]
gi|255736969|gb|EET92365.1| flagellar biosynthesis protein FliQ [Vibrio cholera CIRS 101]
gi|262024053|gb|EEY42748.1| flagellar biosynthesis protein FliQ [Vibrio cholerae RC27]
gi|262030708|gb|EEY49342.1| flagellar biosynthesis protein FliQ [Vibrio cholerae INDRE 91/1]
gi|262032746|gb|EEY51294.1| flagellar biosynthesis protein FliQ [Vibrio cholerae CT 5369-93]
gi|297533715|gb|EFH72557.1| flagellar biosynthetic protein FliQ [Vibrio cholerae RC385]
gi|297542189|gb|EFH78239.1| flagellar biosynthetic protein FliQ [Vibrio cholerae MAK 757]
gi|327484650|gb|AEA79057.1| Flagellar biosynthesis protein FliQ [Vibrio cholerae LMA3894-4]
Length = 89
Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 46/88 (52%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +E+ + ++W +L ++ ++ +G+++A QA T I E TL+F+P++I +
Sbjct: 1 MTPEIFVELFKESLWLVLIMVCAIIIPSLLVGLVVAIFQAATSINEQTLSFLPRLIITLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L+ ++ + F ++ R+ L
Sbjct: 61 ALMFFGHWMTQILMDFFYSMIERMPQVL 88
>gi|326319060|ref|YP_004236732.1| flagellar biosynthetic protein FliQ [Acidovorax avenae subsp.
avenae ATCC 19860]
gi|323375896|gb|ADX48165.1| flagellar biosynthetic protein FliQ [Acidovorax avenae subsp.
avenae ATCC 19860]
Length = 89
Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 50/86 (58%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M VL + R A+ +L S PVL + M +G+L++ QA+TQIQE TL FVPK+IA +
Sbjct: 1 MTSQMVLTMGRDALTLLLMVSMPVLGAVMVIGLLVSIFQAVTQIQEATLAFVPKLIAAMV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
++ P++ + ++ + I S
Sbjct: 61 VFAVAGPWMITSLVDYIRRTIESIPS 86
>gi|114765221|ref|ZP_01444353.1| flagellar biosynthesis protein Q [Pelagibaca bermudensis
HTCC2601]
gi|114542356|gb|EAU45384.1| flagellar biosynthesis protein Q [Roseovarius sp. HTCC2601]
Length = 89
Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 35/87 (40%), Positives = 50/87 (57%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M E+D I A +L S P++ A+ +G++IAF QALTQ+QE+TLTFVPKI+A+FI
Sbjct: 1 MTESDTYTILSDAFLAVLYGSGPIMAIALVVGLIIAFFQALTQVQEMTLTFVPKIVAIFI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
L+ P + + I S
Sbjct: 61 GLLAFTPLMYTVVKRLSDRAFDLIVSG 87
>gi|78485086|ref|YP_391011.1| flagellar biosynthetic protein FliQ [Thiomicrospira crunogena
XCL-2]
gi|78363372|gb|ABB41337.1| flagellar biosynthetic protein FliQ [Thiomicrospira crunogena
XCL-2]
Length = 89
Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 50/88 (56%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M VL I + + + +AP+L A+ +G+L+ QA TQI E+TL+F+PK+ V
Sbjct: 1 MTPEFVLTIGQKMLEVVAMLAAPLLLPALAVGLLVGMFQAATQINEMTLSFIPKVAIVGF 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L+++ P++ + SF ++ I + +
Sbjct: 61 VLVLAGPWMLTTLVSFSRELIENIPAFI 88
>gi|149194202|ref|ZP_01871300.1| Flagellar biosynthesis protein FliQ [Caminibacter mediatlanticus
TB-2]
gi|149136155|gb|EDM24633.1| Flagellar biosynthesis protein FliQ [Caminibacter mediatlanticus
TB-2]
Length = 88
Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/86 (39%), Positives = 54/86 (62%)
Query: 3 EADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITL 62
+++++ +A A + L S P L +M +G+LI+ QA TQI E+TL+FVPKIIA+ I L
Sbjct: 2 QSEIISLAVATLKLALFLSLPALLVSMIVGLLISIFQATTQINEMTLSFVPKIIAIAIVL 61
Query: 63 IISAPFIGGQISSFVTLVLSRIQSSL 88
I + P++ ++ F V S I + L
Sbjct: 62 IFTLPWMMNEMIDFTKYVFSLIPTFL 87
>gi|84502403|ref|ZP_01000539.1| hypothetical protein OB2597_20346 [Oceanicola batsensis HTCC2597]
gi|84389215|gb|EAQ02012.1| hypothetical protein OB2597_20346 [Oceanicola batsensis HTCC2597]
Length = 89
Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 40/87 (45%), Positives = 55/87 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M E D EI T+L +S+P+L A+ +G++IAF QALTQIQE+TLTFVPKI A+F+
Sbjct: 1 MTETDAYEILSDTFLTVLIASSPILGVALVVGLVIAFFQALTQIQEMTLTFVPKIAAIFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
L+++ P I + S V I S
Sbjct: 61 VLLVATPLIYATVKSLSDQVFDLISSG 87
>gi|262273548|ref|ZP_06051362.1| flagellar biosynthesis protein FliQ [Grimontia hollisae CIP
101886]
gi|262222526|gb|EEY73837.1| flagellar biosynthesis protein FliQ [Grimontia hollisae CIP
101886]
Length = 89
Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 41/88 (46%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V A++ I+S ++ + +G++++ QA TQI E TL+F+P+++
Sbjct: 1 MGSEFVSAFFGDALFMIVSMVCVLILPGLLVGLVVSIFQAATQINEQTLSFLPRLLVTLA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L + P++ S + I +
Sbjct: 61 MLGFAGPWMMRTFSDLFARLFQDIPHLI 88
>gi|317406211|gb|EFV86459.1| flagellar biosynthesis protein FliQ [Achromobacter xylosoxidans
C54]
Length = 89
Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 52/88 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + AM L+ + P+L + +G++I+ QA TQI E+TL+F+PK++A+
Sbjct: 1 MTAETVMTMTYQAMKIALAMAGPLLVITLIVGLVISIFQAATQINEMTLSFIPKLLAMCG 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L++ P++ G + ++ ++ +I +
Sbjct: 61 VLVLLGPWLIGIMVDYIRQLIGQIPGLV 88
>gi|83589639|ref|YP_429648.1| flagellar biosynthetic protein FliQ [Moorella thermoacetica ATCC
39073]
gi|83572553|gb|ABC19105.1| flagellar biosynthetic protein FliQ [Moorella thermoacetica ATCC
39073]
Length = 89
Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/88 (38%), Positives = 54/88 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + V+ +AR A+ T L +AP L ++ +G+ I+ LQA TQIQE TLTFVPKIIAV +
Sbjct: 1 MTQEFVIHLAREALTTALLLAAPALSLSLLVGVGISILQATTQIQEQTLTFVPKIIAVIL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+++ ++ + F T + + S +
Sbjct: 61 GMLLLGSWMLNTLIQFTTDIFGNLGSLV 88
>gi|15639704|ref|NP_219154.1| flagellar biosynthetic protein (fliQ) [Treponema pallidum subsp.
pallidum str. Nichols]
gi|189025942|ref|YP_001933714.1| flagellar biosynthetic protein [Treponema pallidum subsp.
pallidum SS14]
gi|3023764|sp|P74931|FLIQ_TREPA RecName: Full=Flagellar biosynthetic protein FliQ
gi|973198|gb|AAB00547.1| FliQ [Treponema pallidum]
gi|3323019|gb|AAC65683.1| flagellar biosynthetic protein (fliQ) [Treponema pallidum subsp.
pallidum str. Nichols]
gi|189018517|gb|ACD71135.1| flagellar biosynthetic protein [Treponema pallidum subsp.
pallidum SS14]
gi|291060081|gb|ADD72816.1| flagellar biosynthetic protein FliQ [Treponema pallidum subsp.
pallidum str. Chicago]
Length = 94
Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 50/88 (56%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + VL + R ++ ++ APVL +A+ +G+++A QA+T IQE TLTFVPK++ +
Sbjct: 2 MTQGAVLGLIREGVFQVVLLVAPVLCTALVVGLIVAIFQAVTSIQEQTLTFVPKMLTILG 61
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+ + ++ + ++ + I +
Sbjct: 62 MIALLGGWMLTMLQNYTVRLFDIIPQLV 89
>gi|89072285|ref|ZP_01158864.1| flagellar biosynthetic protein [Photobacterium sp. SKA34]
gi|330447936|ref|ZP_08311584.1| flagellar biosynthetic protein FliQ [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
gi|89051817|gb|EAR57269.1| flagellar biosynthetic protein [Photobacterium sp. SKA34]
gi|328492127|dbj|GAA06081.1| flagellar biosynthetic protein FliQ [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
Length = 89
Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 44/88 (50%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + + A+W I++ ++ + +G++IA QA TQI E TL+F+P++I +
Sbjct: 1 MTPELAVNLFSNAVWIIINMVMVLVIPGLLVGLVIAVFQAATQINEQTLSFLPRLIMTLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+I + ++ ++ + I +
Sbjct: 61 MVIFAGHWMLRRLMELFDYLFHNIPGMI 88
>gi|167585023|ref|ZP_02377411.1| flagellar biosynthesis protein FliQ [Burkholderia ubonensis Bu]
Length = 90
Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 52/86 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ +A AM L SAP+L A+ +G+L++ QA TQI E TL+F+PK++AV
Sbjct: 1 MTPEQVMTLAHHAMVVGLLVSAPLLLVALAVGLLVSLFQAATQINESTLSFIPKLLAVLA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
TL+I+ P++ + ++ L + +
Sbjct: 61 TLVIAGPWMMTTVLDYLRQTLLHVAT 86
>gi|153834121|ref|ZP_01986788.1| flagellar biosynthetic protein FliQ [Vibrio harveyi HY01]
gi|156975419|ref|YP_001446326.1| flagellar biosynthesis protein FliQ [Vibrio harveyi ATCC
BAA-1116]
gi|269961631|ref|ZP_06175993.1| flagellar biosynthesis protein [Vibrio harveyi 1DA3]
gi|148869491|gb|EDL68489.1| flagellar biosynthetic protein FliQ [Vibrio harveyi HY01]
gi|156527013|gb|ABU72099.1| hypothetical protein VIBHAR_03150 [Vibrio harveyi ATCC BAA-1116]
gi|269833672|gb|EEZ87769.1| flagellar biosynthesis protein [Vibrio harveyi 1DA3]
Length = 89
Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 47/88 (53%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +E+ R A+W +L ++ ++ +G+++A QA T I E TL+F+P++I +
Sbjct: 1 MTPEMFVELFRDALWMVLIMVCAIIIPSLLIGLVVAIFQAATSINEQTLSFLPRLIVTLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L++ ++ + + ++ R+ L
Sbjct: 61 ALMLFGHWMTQMLMEYFFGLIERLPQVL 88
>gi|229524124|ref|ZP_04413529.1| flagellar biosynthesis protein FliQ [Vibrio cholerae bv. albensis
VL426]
gi|229337705|gb|EEO02722.1| flagellar biosynthesis protein FliQ [Vibrio cholerae bv. albensis
VL426]
Length = 89
Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 46/88 (52%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +E+ + ++W +L ++ ++ +G+++A QA T I E TL+F+P++I +
Sbjct: 1 MTPEIFVELFKESLWLVLIMVCAIIIPSLLVGLVVAIFQAATSINEQTLSFLPRLIITLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L+ ++ + F ++ R+ L
Sbjct: 61 ALMFFGHWMTQMLMDFFYSMVERLPQVL 88
>gi|317486798|ref|ZP_07945614.1| HrpO family type III secretion protein [Bilophila wadsworthia
3_1_6]
gi|316921961|gb|EFV43231.1| HrpO family type III secretion protein [Bilophila wadsworthia
3_1_6]
Length = 87
Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 51/81 (62%)
Query: 3 EADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITL 62
E+ ++ A A++ +L S P + A +GIL++ +QA+TQ+QE TLTF K++AV +TL
Sbjct: 2 ESAAIDYAMKALYLVLMLSMPPIIVASLIGILLSLIQAITQLQEQTLTFGVKLLAVVLTL 61
Query: 63 IISAPFIGGQISSFVTLVLSR 83
I ++ G+I + + SR
Sbjct: 62 FIMGGWLSGEILRYADDIFSR 82
>gi|302874604|ref|YP_003843237.1| flagellar biosynthetic protein FliQ [Clostridium cellulovorans
743B]
gi|307690785|ref|ZP_07633231.1| flagellar biosynthesis protein FliQ [Clostridium cellulovorans
743B]
gi|302577461|gb|ADL51473.1| flagellar biosynthetic protein FliQ [Clostridium cellulovorans
743B]
Length = 89
Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 33/86 (38%), Positives = 53/86 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E + + + A+ T L SAP+L +A+ +G++I+ QA TQIQE TLTFVPK+I + +
Sbjct: 1 MSENMLATVMKDAITTGLLMSAPILITAILVGLIISIFQATTQIQEQTLTFVPKLIGIAL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
IIS ++ + +F V I +
Sbjct: 61 VGIISGRWMLHTLVAFTQRVFEMIAN 86
>gi|227876757|ref|ZP_03994866.1| flagellar biosynthesis protein FliQ [Mobiluncus mulieris ATCC
35243]
gi|269976284|ref|ZP_06183280.1| flagellar biosynthetic protein FliQ [Mobiluncus mulieris 28-1]
gi|306817704|ref|ZP_07451446.1| flagellar biosynthetic protein FliQ [Mobiluncus mulieris ATCC
35239]
gi|307701591|ref|ZP_07638608.1| putative flagellar biosynthetic protein FliQ [Mobiluncus mulieris
FB024-16]
gi|227842654|gb|EEJ52854.1| flagellar biosynthesis protein FliQ [Mobiluncus mulieris ATCC
35243]
gi|269935613|gb|EEZ92151.1| flagellar biosynthetic protein FliQ [Mobiluncus mulieris 28-1]
gi|304649518|gb|EFM46801.1| flagellar biosynthetic protein FliQ [Mobiluncus mulieris ATCC
35239]
gi|307613270|gb|EFN92522.1| putative flagellar biosynthetic protein FliQ [Mobiluncus mulieris
FB024-16]
Length = 90
Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 37/88 (42%), Positives = 55/88 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN A VL++A AM +APVL +++ +G +I+ Q++TQIQEVTLTFVPK IAV I
Sbjct: 1 MNSAAVLDLALTAMIMGAKLAAPVLITSLVVGFVISLFQSITQIQEVTLTFVPKTIAVGI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L I ++ + + +++RI L
Sbjct: 61 ALYICGYWMLQTMVNTTLDMMARIPHLL 88
>gi|218778859|ref|YP_002430177.1| flagellar biosynthetic protein FliQ [Desulfatibacillum
alkenivorans AK-01]
gi|218760243|gb|ACL02709.1| Flagellar biosynthetic protein FliQ [Desulfatibacillum
alkenivorans AK-01]
Length = 89
Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 51/88 (57%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + A+ L S P+L + +G+ ++ QA TQIQE+TLTFVPKI+ V +
Sbjct: 1 MTPEFVISFGQEAIKVTLLVSLPLLLLGLVVGLAVSIFQATTQIQEITLTFVPKIVVVLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
I P++ ++ +F + +S+I + +
Sbjct: 61 GAIFFGPWMLEKLMAFTHMCISQIPNFV 88
>gi|126738580|ref|ZP_01754285.1| flagellar biosynthetic protein FliQ [Roseobacter sp. SK209-2-6]
gi|126720379|gb|EBA17085.1| flagellar biosynthetic protein FliQ [Roseobacter sp. SK209-2-6]
Length = 90
Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 46/78 (58%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M E + R A+WT ++ S P+L A+ +G+ + QALT +QE++LTFVPK+ A+ +
Sbjct: 2 MTEGQFYDTLRQALWTAVTMSTPILTVALVVGLAVGLFQALTSVQEMSLTFVPKLAAIVV 61
Query: 61 TLIISAPFIGGQISSFVT 78
++ F+ + +F
Sbjct: 62 VFWMTMGFMTQTLVAFFD 79
>gi|241763644|ref|ZP_04761694.1| flagellar biosynthetic protein FliQ [Acidovorax delafieldii 2AN]
gi|241367119|gb|EER61485.1| flagellar biosynthetic protein FliQ [Acidovorax delafieldii 2AN]
Length = 89
Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 49/86 (56%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M VL + A+ +L + PVL M +G+L++ QA+TQIQE TL FVPK+IA +
Sbjct: 1 MTSQLVLTMGSEALTLLLMIAMPVLGVVMAVGLLVSIFQAVTQIQEATLAFVPKLIAAMV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
I+ P++ + ++ V+ I S
Sbjct: 61 VFAIAGPWMISTLVDYIRRVIESIPS 86
>gi|94264045|ref|ZP_01287845.1| Flagellar biosynthesis protein FliQ [delta proteobacterium
MLMS-1]
gi|94266369|ref|ZP_01290068.1| Flagellar biosynthesis protein FliQ [delta proteobacterium
MLMS-1]
gi|93453021|gb|EAT03509.1| Flagellar biosynthesis protein FliQ [delta proteobacterium
MLMS-1]
gi|93455556|gb|EAT05743.1| Flagellar biosynthesis protein FliQ [delta proteobacterium
MLMS-1]
Length = 89
Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 54/88 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ ADV+ + + A+ L + P+L AM +G+ IA QA+TQIQE+TLTFVPKI AV +
Sbjct: 1 MDPADVVVLIQQAVRVTLLMAGPILGIAMGVGLTIALFQAITQIQEMTLTFVPKIFAVLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
++ + ++ + + ++ I + +
Sbjct: 61 AVLFLSTWMITTMVDYTHNLIVSIPNLV 88
>gi|121596083|ref|YP_987979.1| flagellar biosynthetic protein FliQ [Acidovorax sp. JS42]
gi|120608163|gb|ABM43903.1| flagellar biosynthetic protein FliQ [Acidovorax sp. JS42]
Length = 89
Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 48/86 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M VL + R A+ +L + PVL M +G+L++ QA+TQI E TL FVPK+IA +
Sbjct: 1 MTSQFVLTMGRDALTLLLMIAMPVLGVVMAVGLLVSIFQAVTQIHEATLAFVPKLIAAVV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
I+ P++ + F+ + I S
Sbjct: 61 VFAIAGPWMLTTLVDFLRRTIEAIPS 86
>gi|51598534|ref|YP_072722.1| flagellar biosynthesis protein [Borrelia garinii PBi]
gi|51573105|gb|AAU07130.1| flagellar biosynthesis protein [Borrelia garinii PBi]
Length = 87
Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 57/86 (66%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +L + R ++ I+ SAP+L A+ +G+LI+ QA+T IQ+ TL+F+PKII + +
Sbjct: 1 MTAGHILYLIRISIENIMILSAPMLIIALIVGLLISIFQAITSIQDQTLSFIPKIIVILL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
T++I P+I ++ F ++ +++Q+
Sbjct: 61 TIVIFGPWILNKLMQFTYMIFNQLQN 86
>gi|329901846|ref|ZP_08272934.1| type III secretion protein [Oxalobacteraceae bacterium IMCC9480]
gi|327548983|gb|EGF33599.1| type III secretion protein [Oxalobacteraceae bacterium IMCC9480]
Length = 87
Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 46/82 (56%)
Query: 4 ADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLI 63
AD + + +W I+ SAP L A+ G I+ +QA+TQIQ+ TL +V K++ V ITL
Sbjct: 2 ADTINFFQQGLWMIILLSAPPLLVAVLCGTAISLIQAVTQIQDQTLPYVVKLMGVSITLT 61
Query: 64 ISAPFIGGQISSFVTLVLSRIQ 85
+ +IG ++ + + I
Sbjct: 62 LMGRWIGSELIQMINAAFALIP 83
>gi|319764504|ref|YP_004128441.1| flagellar biosynthetic protein fliq [Alicycliphilus denitrificans
BC]
gi|317119065|gb|ADV01554.1| flagellar biosynthetic protein FliQ [Alicycliphilus denitrificans
BC]
Length = 89
Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 48/86 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M VL + R A+ +L + PVL M +G+L++ QA+TQI E TL FVPK+IA +
Sbjct: 1 MTAQFVLTMGRDALTLLLMIAMPVLGVVMAVGLLVSIFQAVTQIHEATLAFVPKLIAAMV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
I+ P++ + F+ + I S
Sbjct: 61 VFAIAGPWMISTLVDFLRRTIESIPS 86
>gi|149191146|ref|ZP_01869404.1| flagellar biosynthetic protein [Vibrio shilonii AK1]
gi|148834984|gb|EDL51963.1| flagellar biosynthetic protein [Vibrio shilonii AK1]
Length = 89
Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 51/86 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ + + + A+W I+ + ++ ++ +G+++A QA+TQ+ E TL+F+P+++ +
Sbjct: 1 MSPEEAVTLVSQAIWVIILMVSVLIVPSLIVGLVVAIFQAVTQVNEQTLSFLPRLLVTLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
++I++ ++ +IS + I +
Sbjct: 61 SIILAGHWLLQEISDLFLFIFDAIPT 86
>gi|163789634|ref|ZP_02184072.1| flagellar biosynthesis protein [Carnobacterium sp. AT7]
gi|159875166|gb|EDP69232.1| flagellar biosynthesis protein [Carnobacterium sp. AT7]
Length = 87
Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 52/86 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M VL+I R A +++ + P L A+ +G++I+ QA TQ+QE TL+FVPKI+AV +
Sbjct: 1 MTIVQVLDIIREAFMVMIAVAGPTLVIALVVGLIISIFQATTQLQEQTLSFVPKILAVIV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
+LI+ F+ + +F + I +
Sbjct: 61 SLIVFGNFMLNGLITFTQKIFEMIAA 86
>gi|27365291|ref|NP_760819.1| flagellar biosynthesis protein FliQ [Vibrio vulnificus CMCP6]
gi|37680654|ref|NP_935263.1| flagellar biosynthesis protein FliQ [Vibrio vulnificus YJ016]
gi|320155675|ref|YP_004188054.1| flagellar biosynthesis protein FliQ [Vibrio vulnificus MO6-24/O]
gi|27361438|gb|AAO10346.1| flagellar biosynthetic protein FliQ [Vibrio vulnificus CMCP6]
gi|37199403|dbj|BAC95234.1| flagellar biosynthesis pathway, component FliQ [Vibrio vulnificus
YJ016]
gi|319930987|gb|ADV85851.1| flagellar biosynthesis protein FliQ [Vibrio vulnificus MO6-24/O]
Length = 89
Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 46/88 (52%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +E+ R A+W +L ++ ++ +G+++A QA T I E TL+F+P++I +
Sbjct: 1 MTPEVFVELFREALWMVLIMVCAIIIPSLLVGLIVAIFQAATSINEQTLSFLPRLIVTLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L++ ++ + + ++ R L
Sbjct: 61 ALMLFGHWMTQMLMEYFFALVERFPQVL 88
>gi|262404468|ref|ZP_06081023.1| flagellar biosynthesis protein FliQ [Vibrio sp. RC586]
gi|262349500|gb|EEY98638.1| flagellar biosynthesis protein FliQ [Vibrio sp. RC586]
Length = 89
Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 46/88 (52%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +E+ + ++W +L ++ ++ +G+++A QA T I E TL+F+P++I +
Sbjct: 1 MTPEIFVELFKDSLWLVLIMVCAIIIPSLLIGLVVAIFQAATSINEQTLSFLPRLIITLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L+ ++ + F ++ R+ L
Sbjct: 61 ALMFFGHWMTQMLMDFFYSMIERLPQVL 88
>gi|298346007|ref|YP_003718694.1| flagellar biosynthesis protein FliQ [Mobiluncus curtisii ATCC
43063]
gi|304390235|ref|ZP_07372189.1| flagellar biosynthetic protein FliQ [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|315654595|ref|ZP_07907501.1| flagellar biosynthetic protein FliQ [Mobiluncus curtisii ATCC
51333]
gi|315657500|ref|ZP_07910382.1| flagellar biosynthetic protein FliQ [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
gi|298236068|gb|ADI67200.1| flagellar biosynthesis protein FliQ [Mobiluncus curtisii ATCC
43063]
gi|304326717|gb|EFL93961.1| flagellar biosynthetic protein FliQ [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|315491059|gb|EFU80678.1| flagellar biosynthetic protein FliQ [Mobiluncus curtisii ATCC
51333]
gi|315491972|gb|EFU81581.1| flagellar biosynthetic protein FliQ [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
Length = 90
Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 36/88 (40%), Positives = 57/88 (64%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN + VL++A AM SAP+L +++ +G LI+ Q++TQIQEVTLTFVPK +AV I
Sbjct: 1 MNSSAVLDLALTAMLMGAKLSAPILITSLVVGFLISLFQSITQIQEVTLTFVPKTVAVGI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L I+ ++ + + +++RI + L
Sbjct: 61 ALYITGYWMLQTLVTTTEDMMARIPTLL 88
>gi|242238992|ref|YP_002987173.1| flagellar biosynthetic protein FliQ [Dickeya dadantii Ech703]
gi|242131049|gb|ACS85351.1| flagellar biosynthetic protein FliQ [Dickeya dadantii Ech703]
Length = 89
Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 32/86 (37%), Positives = 55/86 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M ++ + AM LS SAP+L +A+ G++++ LQA TQI E+TL+F+PK++AVF
Sbjct: 1 MTPESIMAMGNEAMKVALSLSAPLLLAALVTGLIVSILQAATQINEMTLSFIPKVLAVFA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
T+II+ P++ G +V + + +
Sbjct: 61 TIIIAGPWMLGVFLDYVRSLFGSLPT 86
>gi|28899012|ref|NP_798617.1| flagellar biosynthesis protein FliQ [Vibrio parahaemolyticus RIMD
2210633]
gi|153837022|ref|ZP_01989689.1| flagellar biosynthetic protein FliQ [Vibrio parahaemolyticus
AQ3810]
gi|260365242|ref|ZP_05777799.1| flagellar biosynthetic protein FliQ [Vibrio parahaemolyticus
K5030]
gi|260878792|ref|ZP_05891147.1| flagellar biosynthetic protein FliQ [Vibrio parahaemolyticus
AN-5034]
gi|260897387|ref|ZP_05905883.1| flagellar biosynthetic protein FliQ [Vibrio parahaemolyticus
Peru-466]
gi|4322008|gb|AAD15911.1| polar flagellar assembly protein FliQ [Vibrio parahaemolyticus]
gi|28807231|dbj|BAC60501.1| polar flagellar assembly protein FliQ [Vibrio parahaemolyticus
RIMD 2210633]
gi|149749795|gb|EDM60540.1| flagellar biosynthetic protein FliQ [Vibrio parahaemolyticus
AQ3810]
gi|308088234|gb|EFO37929.1| flagellar biosynthetic protein FliQ [Vibrio parahaemolyticus
Peru-466]
gi|308094198|gb|EFO43893.1| flagellar biosynthetic protein FliQ [Vibrio parahaemolyticus
AN-5034]
gi|308115483|gb|EFO53023.1| flagellar biosynthetic protein FliQ [Vibrio parahaemolyticus
K5030]
gi|328474451|gb|EGF45256.1| flagellar biosynthesis protein FliQ [Vibrio parahaemolyticus
10329]
Length = 89
Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 47/88 (53%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +E+ R A+W +L ++ ++ +G+++A QA T I E TL+F+P++I +
Sbjct: 1 MTPEMFVELFREALWMVLIMVCAIIIPSLLIGLVVAIFQAATSINEQTLSFLPRLIVTLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L++ ++ + + ++ R+ L
Sbjct: 61 ALMLFGHWMTQMLMEYFFGLIERLPQVL 88
>gi|292489151|ref|YP_003532038.1| flagellar biosynthetic protein FliQ [Erwinia amylovora CFBP1430]
gi|292900269|ref|YP_003539638.1| flagellar biosynthetic protein [Erwinia amylovora ATCC 49946]
gi|291200117|emb|CBJ47243.1| flagellar biosynthetic protein [Erwinia amylovora ATCC 49946]
gi|291554585|emb|CBA22217.1| Flagellar biosynthetic protein FliQ [Erwinia amylovora CFBP1430]
gi|312173309|emb|CBX81564.1| Flagellar biosynthetic protein FliQ [Erwinia amylovora ATCC
BAA-2158]
Length = 89
Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 47/85 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + A+ L + P+L +A+ G++I+ LQA TQI E+T+TF+PKI+ +
Sbjct: 1 MTPESVMSLGIQAIKLGLMVAGPLLLAALATGLIISILQAATQINEMTMTFIPKILVIIG 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
++ P++ + L L+ I
Sbjct: 61 VAVVLGPWMMRNFIEYTRLTLTNIP 85
>gi|157145257|ref|YP_001452576.1| flagellar biosynthesis protein FliQ [Citrobacter koseri ATCC
BAA-895]
gi|157082462|gb|ABV12140.1| hypothetical protein CKO_00994 [Citrobacter koseri ATCC BAA-895]
Length = 89
Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 33/85 (38%), Positives = 54/85 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ I AM L+ +AP+L A+F G++I+ LQA TQI E+TL+F+PKI+AVF
Sbjct: 1 MTPESVMMIGTEAMKVALALAAPLLLVALFTGLIISILQAATQINEMTLSFIPKIVAVFT 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
+I++ P++ + +V + S +
Sbjct: 61 AIIVAGPWMLNLLLDYVRTLFSNLP 85
>gi|154253015|ref|YP_001413839.1| flagellar biosynthetic protein FliQ [Parvibaculum lavamentivorans
DS-1]
gi|154156965|gb|ABS64182.1| flagellar biosynthetic protein FliQ [Parvibaculum lavamentivorans
DS-1]
Length = 87
Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 42/87 (48%), Positives = 65/87 (74%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ +VL++AR A++ L SAP++ A+ +G+ IA LQALTQ+QE+TL FVPKI+A+F+
Sbjct: 1 MSGPEVLDLARQAIYVQLIVSAPMMAVALLVGLAIALLQALTQVQEMTLVFVPKIVAIFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
T++IS PF+ +S F+TLV +I +
Sbjct: 61 TMLISLPFMAQALSGFMTLVAQKIVTG 87
>gi|15618733|ref|NP_225019.1| Yop proteins translocation protein S [Chlamydophila pneumoniae
CWL029]
gi|15836357|ref|NP_300881.1| YopS translocation protein [Chlamydophila pneumoniae J138]
gi|16752216|ref|NP_445584.1| type III secretion inner membrane protein SctS [Chlamydophila
pneumoniae AR39]
gi|33242184|ref|NP_877125.1| translocation protein S [Chlamydophila pneumoniae TW-183]
gi|4377136|gb|AAD18961.1| Yop proteins translocation protein S [Chlamydophila pneumoniae
CWL029]
gi|6672010|dbj|BAA88642.1| YopS translocation protein [Chlamydophila pneumoniae]
gi|8163544|gb|AAF73726.1| type III secretion inner membrane protein SctS [Chlamydophila
pneumoniae AR39]
gi|8979198|dbj|BAA99032.1| YopS translocation protein [Chlamydophila pneumoniae J138]
gi|33236695|gb|AAP98782.1| translocation protein S [Chlamydophila pneumoniae TW-183]
gi|269302614|gb|ACZ32714.1| putative Yop translocation protein S [Chlamydophila pneumoniae
LPCoLN]
Length = 95
Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 43/80 (53%)
Query: 4 ADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLI 63
+ + E + ++ IL SAP + A +GI++A QA TQIQE T F K++ +F TL+
Sbjct: 11 SVLFEYSYQSLLLILIVSAPPIILASIVGIMVAIFQAATQIQEQTFAFAVKLVVIFGTLM 70
Query: 64 ISAPFIGGQISSFVTLVLSR 83
IS ++ I F +
Sbjct: 71 ISGGWLSNMILRFAGQIFQN 90
>gi|28901398|ref|NP_801053.1| flagellar biosynthetic protein [Vibrio parahaemolyticus RIMD
2210633]
gi|153835871|ref|ZP_01988538.1| flagellar biosynthetic protein FliQ [Vibrio parahaemolyticus
AQ3810]
gi|260362952|ref|ZP_05775821.1| flagellar biosynthetic protein FliQ [Vibrio parahaemolyticus
K5030]
gi|260880239|ref|ZP_05892594.1| flagellar biosynthetic protein FliQ [Vibrio parahaemolyticus
AN-5034]
gi|260895356|ref|ZP_05903852.1| flagellar biosynthetic protein FliQ [Vibrio parahaemolyticus
Peru-466]
gi|260901181|ref|ZP_05909576.1| flagellar biosynthetic protein FliQ [Vibrio parahaemolyticus
AQ4037]
gi|28809945|dbj|BAC62886.1| flagellar biosynthetic protein [Vibrio parahaemolyticus RIMD
2210633]
gi|149750625|gb|EDM61370.1| flagellar biosynthetic protein FliQ [Vibrio parahaemolyticus
AQ3810]
gi|308085740|gb|EFO35435.1| flagellar biosynthetic protein FliQ [Vibrio parahaemolyticus
Peru-466]
gi|308092707|gb|EFO42402.1| flagellar biosynthetic protein FliQ [Vibrio parahaemolyticus
AN-5034]
gi|308109349|gb|EFO46889.1| flagellar biosynthetic protein FliQ [Vibrio parahaemolyticus
AQ4037]
gi|308112057|gb|EFO49597.1| flagellar biosynthetic protein FliQ [Vibrio parahaemolyticus
K5030]
gi|328469332|gb|EGF40278.1| flagellar biosynthetic protein [Vibrio parahaemolyticus 10329]
Length = 89
Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 43/88 (48%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + + A+W I+ A ++ + +G+ IA QA TQI E TL+F+P++I +
Sbjct: 1 MTPELTVTLFSDAVWLIILMVAVLVVPGLIVGLGIAVFQAATQINEQTLSFLPRLIVTLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+I + +I +I + I +
Sbjct: 61 MVIFAGHWILRKIMELFDFLFHNIPGMI 88
>gi|300722651|ref|YP_003711941.1| flagellar biosynthesis protein [Xenorhabdus nematophila ATCC
19061]
gi|297629158|emb|CBJ89754.1| flagellar biosynthesis [Xenorhabdus nematophila ATCC 19061]
Length = 89
Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 32/86 (37%), Positives = 57/86 (66%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + AM L+ +AP+L SA+ G++I+ LQA TQ+ E+TL+F+PKI+AVF+
Sbjct: 1 MTPESVMALGVEAMKVALALAAPLLLSALICGLIISLLQAATQVNEMTLSFIPKILAVFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
T++I+ P++ + ++ + S I +
Sbjct: 61 TIVIAGPWMLNLLLDYMHALFSSIPA 86
>gi|114566401|ref|YP_753555.1| hypothetical protein Swol_0866 [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
gi|114337336|gb|ABI68184.1| conserved hypothetical protein [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
Length = 90
Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 41/88 (46%), Positives = 58/88 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M E +L IA A+ +L SAPVL +A+ G+LI+ LQA TQ+QE+TLTFVPKII VF+
Sbjct: 1 MYENIILGIANEALIVVLLLSAPVLGAALITGLLISILQATTQLQEMTLTFVPKIIVVFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+II P++ I++F + I S +
Sbjct: 61 VIIIFGPWMLNVITAFTHDLFLAIPSFV 88
>gi|39936946|ref|NP_949222.1| flagellar biosynthesis protein FliQ [Rhodopseudomonas palustris
CGA009]
gi|192292774|ref|YP_001993379.1| flagellar biosynthesis protein FliQ [Rhodopseudomonas palustris
TIE-1]
gi|39650803|emb|CAE29326.1| putative flagellar biosynthesis protein fliQ [Rhodopseudomonas
palustris CGA009]
gi|192286523|gb|ACF02904.1| export protein FliQ family 3 [Rhodopseudomonas palustris TIE-1]
Length = 87
Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 37/87 (42%), Positives = 60/87 (68%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + L++AR A+WTI+ SAP++ + +G+ ++ +QALTQIQE TL FVPKI+A+F+
Sbjct: 1 MTGPETLDVARDAIWTIVVVSAPLMVVGLVVGVAVSLVQALTQIQEQTLVFVPKILAMFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
TL+++ PF+ + S + + SRI
Sbjct: 61 TLVLALPFMADALHSQMMRISSRIIGG 87
>gi|148976424|ref|ZP_01813130.1| flagellar biosynthesis protein Q [Vibrionales bacterium SWAT-3]
gi|145964247|gb|EDK29503.1| flagellar biosynthesis protein Q [Vibrionales bacterium SWAT-3]
Length = 89
Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 49/88 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN +E+ R A+W +L ++ ++ +G+++A QA T I E TL+F+P++I +
Sbjct: 1 MNPEIFVELFRDALWMVLIMVCAIIIPSLLIGLVVAIFQAATSINEQTLSFLPRLIVTLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L++ A ++ + F ++ R+ L
Sbjct: 61 ALMLFAHWMTQMMMEFFFELIERLPQVL 88
>gi|126697833|ref|YP_001086730.1| flagellar export protein [Clostridium difficile 630]
gi|255099429|ref|ZP_05328406.1| flagellar export protein [Clostridium difficile QCD-63q42]
gi|115249270|emb|CAJ67083.1| Flagellar biosynthetic protein FliQ [Clostridium difficile]
Length = 89
Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 53/84 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E ++ + + M+T +APVL ++ +G+LI+ QA TQIQE TLTFVPK+IA+ +
Sbjct: 1 MSEFMIMSVLKNGMFTGAMIAAPVLIVSLVVGLLISVFQATTQIQEQTLTFVPKLIAILL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
+ I ++ + SF + + + I
Sbjct: 61 VVAIGGSWMLHTLISFTSEIFNMI 84
>gi|254436897|ref|ZP_05050391.1| flagellar biosynthetic protein FliQ [Octadecabacter antarcticus
307]
gi|198252343|gb|EDY76657.1| flagellar biosynthetic protein FliQ [Octadecabacter antarcticus
307]
Length = 88
Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 48/84 (57%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +E R A W I+ ++ P+L A+ +G++I +QA T I E+TL+FVPK++ V
Sbjct: 1 MEFDSNIESLRLAYWQIIIAAGPILGVALAVGLVIGIIQAATSINEMTLSFVPKLVIVLA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
+ + F+ +++ + + +I
Sbjct: 61 AMAGFSTFMMQEMTDYFASIFEQI 84
>gi|328958269|ref|YP_004375655.1| flagellar biosynthesis protein FliQ [Carnobacterium sp. 17-4]
gi|328674593|gb|AEB30639.1| flagellar biosynthesis protein FliQ [Carnobacterium sp. 17-4]
Length = 87
Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 32/86 (37%), Positives = 52/86 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M VL+I R A +++ + P L A+ +G++I+ +QA TQ+QE TL+FVPKI+AV +
Sbjct: 1 MTTVKVLDIIREAFMVMITVAGPTLIIALVIGLIISIIQATTQLQEQTLSFVPKILAVIV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
+LII F+ + F + I +
Sbjct: 61 SLIIFGNFMLNSLIGFTQKIFEMIAA 86
>gi|327399032|ref|YP_004339901.1| flagellar biosynthetic protein FliQ [Hippea maritima DSM 10411]
gi|327181661|gb|AEA33842.1| flagellar biosynthetic protein FliQ [Hippea maritima DSM 10411]
Length = 89
Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 57/88 (64%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ A V+ I + AM + + P+L ++ G+L++ QA+TQIQE+TLTF+PKIIA +
Sbjct: 1 MDIATVIAIGKEAMKVTMLIAMPILIVSLIAGLLVSIFQAVTQIQEMTLTFIPKIIATAV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
T+I AP++ + ++V + S I + +
Sbjct: 61 TVIFLAPWMTKLLVNYVIHLYSSIPTFI 88
>gi|258621115|ref|ZP_05716149.1| flagellar biosynthesis protein [Vibrio mimicus VM573]
gi|258626188|ref|ZP_05721036.1| flagellar biosynthesis protein [Vibrio mimicus VM603]
gi|261209858|ref|ZP_05924159.1| flagellar biosynthesis protein FliQ [Vibrio sp. RC341]
gi|262170891|ref|ZP_06038569.1| flagellar biosynthesis protein FliQ [Vibrio mimicus MB-451]
gi|258581543|gb|EEW06444.1| flagellar biosynthesis protein [Vibrio mimicus VM603]
gi|258586503|gb|EEW11218.1| flagellar biosynthesis protein [Vibrio mimicus VM573]
gi|260841044|gb|EEX67569.1| flagellar biosynthesis protein FliQ [Vibrio sp. RC341]
gi|261891967|gb|EEY37953.1| flagellar biosynthesis protein FliQ [Vibrio mimicus MB-451]
Length = 89
Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 46/88 (52%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +E+ + ++W +L ++ ++ +G+++A QA T I E TL+F+P++I +
Sbjct: 1 MTPEIFVELFKESLWLVLIMVCAIIIPSLLIGLVVAIFQAATSINEQTLSFLPRLIITLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L+ ++ + F ++ R+ L
Sbjct: 61 ALMFFGHWMTQMLMDFFYSMIERLPQVL 88
>gi|237731997|ref|ZP_04562478.1| flagellar biosynthetic protein FliQ [Citrobacter sp. 30_2]
gi|226907536|gb|EEH93454.1| flagellar biosynthetic protein FliQ [Citrobacter sp. 30_2]
Length = 89
Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 33/85 (38%), Positives = 54/85 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + AM L+ +AP+L A+ G++I+ LQA TQI E+TL+F+PKI+AVFI
Sbjct: 1 MTPESVMMMGTEAMKVALALAAPLLLVALITGLIISILQAATQINEMTLSFIPKIVAVFI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
+I++ P++ + +V + S I
Sbjct: 61 AIIVAGPWMLNLLLDYVRTLFSNIP 85
>gi|124265769|ref|YP_001019773.1| flagellar biosynthesis protein [Methylibium petroleiphilum PM1]
gi|124258544|gb|ABM93538.1| flagellar biosynthesis protein [Methylibium petroleiphilum PM1]
Length = 89
Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 48/86 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ V + + +L SAP+L + + +G+LI+ QA TQI E TL+FVPK+IA
Sbjct: 1 MDAQQVFTFGQQGLVLLLMVSAPMLLTILVVGLLISVFQAATQINESTLSFVPKLIAAVA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
L I+ P++ I ++ L I +
Sbjct: 61 VLAIAGPWMLTTIVEYLQRTLQAIPT 86
>gi|238752376|ref|ZP_04613854.1| Secretion system apparatus protein ssaS [Yersinia rohdei ATCC
43380]
gi|238709417|gb|EEQ01657.1| Secretion system apparatus protein ssaS [Yersinia rohdei ATCC
43380]
Length = 89
Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 54/86 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ A V+ +A +W +L S PV+ A +G++++ LQALTQIQ+ TL F+ K++AV
Sbjct: 1 MSNAIVVHLATQLLWIVLLLSMPVVVVASAVGLIVSLLQALTQIQDQTLQFLIKLLAVSA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
TL+++ ++G + ++ +I S
Sbjct: 61 TLLLTYHWMGTTLLNYTQQTFLQITS 86
>gi|328496286|gb|AEB21290.1| FliQ [Yersinia ruckeri]
Length = 89
Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 57/88 (64%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + AM L+ +AP+L +A+ G+L++ LQA TQI E+TL+F+PKI+AVF
Sbjct: 1 MTPESVMALGTEAMKIALALAAPLLLAALISGLLVSLLQAATQINEMTLSFIPKILAVFA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
T++I+ P++ I ++ + + + + +
Sbjct: 61 TMVIAGPWMLNLILDYMRNLFTSLPTLI 88
>gi|306820132|ref|ZP_07453780.1| flagellar biosynthetic protein FliQ [Eubacterium yurii subsp.
margaretiae ATCC 43715]
gi|304551910|gb|EFM39853.1| flagellar biosynthetic protein FliQ [Eubacterium yurii subsp.
margaretiae ATCC 43715]
Length = 89
Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 53/88 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ V+ I + A IL SAP+L + +G++++ QA TQIQE TL FVPKI+AV +
Sbjct: 1 MDIDVVVNIIQQAALMILLLSAPMLLIGLVVGLIVSIFQATTQIQEATLAFVPKIVAVLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+++I P+I + +F + + + +
Sbjct: 61 SMVIFGPWIISTLVNFTRNLFLGMNNFI 88
>gi|290475715|ref|YP_003468604.1| flagellar biosynthesis protein [Xenorhabdus bovienii SS-2004]
gi|289175037|emb|CBJ81840.1| flagellar biosynthesis [Xenorhabdus bovienii SS-2004]
Length = 89
Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 33/86 (38%), Positives = 58/86 (67%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + AM L+ +AP+L SA+ G++I+ LQA TQI E+TL+F+PKI+AVF+
Sbjct: 1 MTPESVMALGIEAMKVALALAAPLLLSALICGLVISLLQAATQINEMTLSFIPKILAVFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
T++I+ P++ + ++ ++ S I +
Sbjct: 61 TIVIAGPWMLNLLLDYMRVLFSSIPT 86
>gi|15596889|ref|NP_250383.1| translocation protein in type III secretion [Pseudomonas
aeruginosa PAO1]
gi|107101124|ref|ZP_01365042.1| hypothetical protein PaerPA_01002156 [Pseudomonas aeruginosa
PACS2]
gi|116049642|ref|YP_791553.1| putative translocation protein in type III secretion [Pseudomonas
aeruginosa UCBPP-PA14]
gi|218892352|ref|YP_002441219.1| putative translocation protein in type III secretion [Pseudomonas
aeruginosa LESB58]
gi|254234791|ref|ZP_04928114.1| hypothetical protein PACG_00661 [Pseudomonas aeruginosa C3719]
gi|254240037|ref|ZP_04933359.1| hypothetical protein PA2G_00674 [Pseudomonas aeruginosa 2192]
gi|296389924|ref|ZP_06879399.1| putative translocation protein in type III secretion [Pseudomonas
aeruginosa PAb1]
gi|313110378|ref|ZP_07796267.1| putative translocation protein in type III secretion [Pseudomonas
aeruginosa 39016]
gi|9947665|gb|AAG05081.1|AE004596_7 probable translocation protein in type III secretion [Pseudomonas
aeruginosa PAO1]
gi|115584863|gb|ABJ10878.1| putative translocation protein in type III secretion [Pseudomonas
aeruginosa UCBPP-PA14]
gi|126166722|gb|EAZ52233.1| hypothetical protein PACG_00661 [Pseudomonas aeruginosa C3719]
gi|126193415|gb|EAZ57478.1| hypothetical protein PA2G_00674 [Pseudomonas aeruginosa 2192]
gi|218772578|emb|CAW28361.1| probable translocation protein in type III secretion [Pseudomonas
aeruginosa LESB58]
gi|310882769|gb|EFQ41363.1| putative translocation protein in type III secretion [Pseudomonas
aeruginosa 39016]
Length = 88
Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 52/85 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ AD+L +W +L S P + A +G L++ +QALTQIQE TL FV K++AV +
Sbjct: 1 MSSADILHFTNQTLWLVLVLSLPPVLVAALIGTLVSLVQALTQIQEQTLGFVAKLVAVVV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
L ++ ++GG++ F + L ++
Sbjct: 61 VLFATSGWLGGELYRFAEMTLLKVP 85
>gi|149189859|ref|ZP_01868139.1| flagellar biosynthetic protein [Vibrio shilonii AK1]
gi|148836345|gb|EDL53302.1| flagellar biosynthetic protein [Vibrio shilonii AK1]
Length = 89
Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 46/88 (52%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + + A+W I+S ++ + +G++IA QA TQIQE TL+F+PK++A +
Sbjct: 1 MTPELTVTLFSNAVWLIISIVMVLVVPGLLVGLVIAVFQAATQIQEQTLSFLPKLLATLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+I + ++ +I + I +
Sbjct: 61 MVIFAGHWMLRKIMELFDFLFHNIPGMI 88
>gi|152997436|ref|YP_001342271.1| flagellar biosynthetic protein FliQ [Marinomonas sp. MWYL1]
gi|150838360|gb|ABR72336.1| flagellar biosynthetic protein FliQ [Marinomonas sp. MWYL1]
Length = 89
Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 46/85 (54%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN VL++ + I+ V+ ++ +G++++ QA TQI E TL+F+P++I +
Sbjct: 1 MNPQVVLDLYGQGFYLIVLIVGVVMVPSLIVGLIVSVFQAATQINEQTLSFLPRLIVTIL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
++ P+I ++ F T + I
Sbjct: 61 VIMQLGPWILMKLMDFTTNLFINIP 85
>gi|146278637|ref|YP_001168796.1| export protein FliQ [Rhodobacter sphaeroides ATCC 17025]
gi|145556878|gb|ABP71491.1| export protein FliQ, family 3 [Rhodobacter sphaeroides ATCC
17025]
Length = 88
Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+EA + + R +W + SAP+L A+ +G+ I LQALT +QE+TLTFVPK+ A+ +
Sbjct: 1 MSEAALYDALRQGLWVAVLISAPLLTVALVVGVGIGILQALTSVQEMTLTFVPKVGAMLL 60
Query: 61 TLIISAPFIGGQISSFVTL-VLSRIQSS 87
+S F+ + +F ++ RI+
Sbjct: 61 VFWVSMSFMTTTLVAFFVEGIIPRIEGG 88
>gi|149928151|ref|ZP_01916397.1| flagellar biosynthetic protein FliQ [Limnobacter sp. MED105]
gi|149823136|gb|EDM82374.1| flagellar biosynthetic protein FliQ [Limnobacter sp. MED105]
Length = 89
Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 55/86 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN VL + ++A+ +L S P+L A+ +G+L++ LQA TQI E+TL+F+PKI+ +F
Sbjct: 1 MNSQTVLNLGQSALEVMLMVSGPLLVVALVVGLLVSILQAATQINEMTLSFIPKILGIFA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
TL++ P++ + + ++ I +
Sbjct: 61 TLLLLGPWMLATLVDYTQRLIMSIPT 86
>gi|145298357|ref|YP_001141198.1| flagellar biosynthetic protein FliQ [Aeromonas salmonicida subsp.
salmonicida A449]
gi|142851129|gb|ABO89450.1| flagellar biosynthetic protein FliQ [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 89
Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 45/85 (52%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ +++ R A+W + V+ ++ +G+++A QA T I E TL+F+P++I
Sbjct: 1 MSPETFVDVFREALWLVTIMVCAVILPSLMIGLVVAIFQAATSINEQTLSFLPRLIVTLF 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
L A + + F L++S+I
Sbjct: 61 ALGAGAHWGLQSLMDFFLLMVSQIP 85
>gi|15895418|ref|NP_348767.1| flagellar biosynthesis protein FliQ [Clostridium acetobutylicum
ATCC 824]
gi|15025141|gb|AAK80107.1|AE007715_12 Flagellar biosynthesis protein FliQ [Clostridium acetobutylicum
ATCC 824]
gi|325509564|gb|ADZ21200.1| Flagellar biosynthesis protein FliQ [Clostridium acetobutylicum
EA 2018]
Length = 89
Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 51/86 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E +++I + A+ T L SAP+L ++ +G+ I+ QA TQIQE TLTF+PK++A+
Sbjct: 1 MSENMIIKIMKDAITTGLIVSAPMLIVSIIIGLFISIFQATTQIQEQTLTFLPKLLAIAA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
++ ++ + T + I +
Sbjct: 61 VGFLAGSWMLHMMMGLTTRMFDVIAN 86
>gi|218549274|ref|YP_002383065.1| flagellar biosynthesis protein FliQ [Escherichia fergusonii ATCC
35469]
gi|218356815|emb|CAQ89443.1| flagellar biosynthesis protein [Escherichia fergusonii ATCC
35469]
gi|324114208|gb|EGC08181.1| flagellar biosynthetic protein FliQ [Escherichia fergusonii B253]
gi|325497691|gb|EGC95550.1| flagellar biosynthesis protein FliQ [Escherichia fergusonii
ECD227]
Length = 89
Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 34/88 (38%), Positives = 56/88 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + AM L+ +AP+L A+ G++I+ LQA TQI E+TL+F+PKI+AVFI
Sbjct: 1 MTPESVMMMGTEAMKVALALAAPLLLVALVTGLIISILQAATQINEMTLSFIPKIVAVFI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+I++ P++ + +V + S I S +
Sbjct: 61 AIIVAGPWMLSLLLDYVRTLFSNIPSLI 88
>gi|193063539|ref|ZP_03044628.1| type III secretion apparatus protein EpaQ [Escherichia coli E22]
gi|194426266|ref|ZP_03058821.1| type III secretion apparatus protein EpaQ [Escherichia coli B171]
gi|260845524|ref|YP_003223302.1| type III secretion protein EpaQ [Escherichia coli O103:H2 str.
12009]
gi|14422434|dbj|BAB60841.1| epaQ [Escherichia coli]
gi|192930816|gb|EDV83421.1| type III secretion apparatus protein EpaQ [Escherichia coli E22]
gi|194415574|gb|EDX31841.1| type III secretion apparatus protein EpaQ [Escherichia coli B171]
gi|257760671|dbj|BAI32168.1| type III secretion protein EpaQ [Escherichia coli O103:H2 str.
12009]
Length = 86
Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 44/79 (55%)
Query: 4 ADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLI 63
D++ A++ IL SA + A F+G+L+ Q +TQ+QE TL F K++ V I
Sbjct: 2 DDIVFAGNRALYLILVMSAGPIEVATFVGLLVGLFQTVTQLQEQTLPFGVKLLCVSICFF 61
Query: 64 ISAPFIGGQISSFVTLVLS 82
+ + + G ++ SF +L+
Sbjct: 62 LMSGWYGEKLYSFGIEMLN 80
>gi|288962709|ref|YP_003453003.1| FliQ protein [Azospirillum sp. B510]
gi|288914975|dbj|BAI76459.1| FliQ protein [Azospirillum sp. B510]
Length = 88
Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 37/84 (44%), Positives = 60/84 (71%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN+ADVLE+ R +WT L +AP L A+ +G+ I+ +QALTQ+QE+TLTFVPKI+A+ +
Sbjct: 1 MNQADVLEVLRGGIWTTLLVAAPPLIVAVVVGVGISLVQALTQVQEMTLTFVPKIVAILV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
+++ PF+ G ++++ + I
Sbjct: 61 VTVLALPFMYGALATYADRLSDLI 84
>gi|15803388|ref|NP_289421.1| type III secretion apparatus protein [Escherichia coli O157:H7
EDL933]
gi|15832978|ref|NP_311751.1| EpaQ [Escherichia coli O157:H7 str. Sakai]
gi|157158179|ref|YP_001464196.1| type III secretion apparatus protein EpaQ [Escherichia coli
E24377A]
gi|157162319|ref|YP_001459637.1| type III secretion apparatus protein EpaQ [Escherichia coli HS]
gi|168747670|ref|ZP_02772692.1| type III secretion apparatus protein EpaQ [Escherichia coli
O157:H7 str. EC4113]
gi|168753790|ref|ZP_02778797.1| type III secretion apparatus protein EpaQ [Escherichia coli
O157:H7 str. EC4401]
gi|168759980|ref|ZP_02784987.1| type III secretion apparatus protein EpaQ [Escherichia coli
O157:H7 str. EC4501]
gi|168766845|ref|ZP_02791852.1| type III secretion apparatus protein EpaQ [Escherichia coli
O157:H7 str. EC4486]
gi|168775729|ref|ZP_02800736.1| type III secretion apparatus protein EpaQ [Escherichia coli
O157:H7 str. EC4196]
gi|168778866|ref|ZP_02803873.1| type III secretion apparatus protein EpaQ [Escherichia coli
O157:H7 str. EC4076]
gi|168785698|ref|ZP_02810705.1| type III secretion apparatus protein EpaQ [Escherichia coli
O157:H7 str. EC869]
gi|168799985|ref|ZP_02824992.1| type III secretion apparatus protein EpaQ [Escherichia coli
O157:H7 str. EC508]
gi|170018892|ref|YP_001723846.1| HrpO family type III secretion protein [Escherichia coli ATCC
8739]
gi|191166013|ref|ZP_03027849.1| type III secretion apparatus protein EpaQ [Escherichia coli B7A]
gi|193071823|ref|ZP_03052712.1| type III secretion apparatus protein EpaQ [Escherichia coli
E110019]
gi|195936470|ref|ZP_03081852.1| HrpO family type III secretion protein [Escherichia coli O157:H7
str. EC4024]
gi|208808401|ref|ZP_03250738.1| type III secretion apparatus protein EpaQ [Escherichia coli
O157:H7 str. EC4206]
gi|208814108|ref|ZP_03255437.1| type III secretion apparatus protein EpaQ [Escherichia coli
O157:H7 str. EC4045]
gi|208820917|ref|ZP_03261237.1| type III secretion apparatus protein EpaQ [Escherichia coli
O157:H7 str. EC4042]
gi|209399840|ref|YP_002272330.1| type III secretion apparatus protein EpaQ [Escherichia coli
O157:H7 str. EC4115]
gi|217326771|ref|ZP_03442854.1| type III secretion apparatus protein EpaQ [Escherichia coli
O157:H7 str. TW14588]
gi|254794805|ref|YP_003079642.1| type III secretion apparatus protein [Escherichia coli O157:H7
str. TW14359]
gi|256019340|ref|ZP_05433205.1| type III secretion apparatus protein [Shigella sp. D9]
gi|260856976|ref|YP_003230867.1| type III secretion protein EpaQ [Escherichia coli O26:H11 str.
11368]
gi|260869539|ref|YP_003235941.1| type III secretion protein EpaQ [Escherichia coli O111:H- str.
11128]
gi|261226165|ref|ZP_05940446.1| type III secretion apparatus protein [Escherichia coli O157:H7
str. FRIK2000]
gi|261256581|ref|ZP_05949114.1| type III secretion protein EpaQ [Escherichia coli O157:H7 str.
FRIK966]
gi|293406353|ref|ZP_06650279.1| antigen surface presentation protein SpaQ [Escherichia coli
FVEC1412]
gi|293412211|ref|ZP_06654934.1| hypothetical protein ECEG_02216 [Escherichia coli B354]
gi|293416107|ref|ZP_06658747.1| type III secretion protein SctS [Escherichia coli B185]
gi|293449184|ref|ZP_06663605.1| type III secretion protein SctS [Escherichia coli B088]
gi|298382088|ref|ZP_06991685.1| type III secretion protein SctS [Escherichia coli FVEC1302]
gi|300820660|ref|ZP_07100811.1| surface presentation of antigens protein SpaQ [Escherichia coli
MS 119-7]
gi|300898068|ref|ZP_07116436.1| surface presentation of antigens protein SpaQ [Escherichia coli
MS 198-1]
gi|300936203|ref|ZP_07151139.1| surface presentation of antigens protein SpaQ [Escherichia coli
MS 21-1]
gi|300950613|ref|ZP_07164515.1| surface presentation of antigens protein SpaQ [Escherichia coli
MS 116-1]
gi|300958194|ref|ZP_07170348.1| surface presentation of antigens protein SpaQ [Escherichia coli
MS 175-1]
gi|301026124|ref|ZP_07189598.1| surface presentation of antigens protein SpaQ [Escherichia coli
MS 196-1]
gi|301027457|ref|ZP_07190794.1| surface presentation of antigens protein SpaQ [Escherichia coli
MS 69-1]
gi|301643800|ref|ZP_07243837.1| surface presentation of antigens protein SpaQ [Escherichia coli
MS 146-1]
gi|307139549|ref|ZP_07498905.1| type III secretion protein, HrpO family [Escherichia coli H736]
gi|309793921|ref|ZP_07688346.1| surface presentation of antigens protein SpaQ [Escherichia coli
MS 145-7]
gi|331643549|ref|ZP_08344680.1| surface presentation of antigens protein SpaQ [Escherichia coli
H736]
gi|331664425|ref|ZP_08365331.1| surface presentation of antigens protein SpaQ [Escherichia coli
TA143]
gi|331669596|ref|ZP_08370442.1| surface presentation of antigens protein SpaQ [Escherichia coli
TA271]
gi|331674341|ref|ZP_08375101.1| surface presentation of antigens protein SpaQ [Escherichia coli
TA280]
gi|331678846|ref|ZP_08379520.1| surface presentation of antigens protein SpaQ [Escherichia coli
H591]
gi|332280454|ref|ZP_08392867.1| type III secretion apparatus protein EpaQ [Shigella sp. D9]
gi|12517366|gb|AAG57980.1|AE005515_2 type III secretion apparatus protein [Escherichia coli O157:H7
str. EDL933]
gi|13363196|dbj|BAB37147.1| type III secretion protein EpaQ [Escherichia coli O157:H7 str.
Sakai]
gi|62085062|gb|AAX62927.1| type III secretion apparatus protein [Escherichia coli]
gi|62085078|gb|AAX62942.1| type III secretion apparatus protein [Escherichia coli]
gi|62085086|gb|AAX62949.1| type III secretion apparatus protein [Escherichia coli]
gi|157067999|gb|ABV07254.1| type III secretion apparatus protein EpaQ [Escherichia coli HS]
gi|157080209|gb|ABV19917.1| type III secretion apparatus protein EpaQ [Escherichia coli
E24377A]
gi|169753820|gb|ACA76519.1| type III secretion protein, HrpO family [Escherichia coli ATCC
8739]
gi|186976182|gb|ACD01064.1| EpaQ [Escherichia coli O157:H7 str. EC10]
gi|187768730|gb|EDU32574.1| type III secretion apparatus protein EpaQ [Escherichia coli
O157:H7 str. EC4196]
gi|188017805|gb|EDU55927.1| type III secretion apparatus protein EpaQ [Escherichia coli
O157:H7 str. EC4113]
gi|189003282|gb|EDU72268.1| type III secretion apparatus protein EpaQ [Escherichia coli
O157:H7 str. EC4076]
gi|189358380|gb|EDU76799.1| type III secretion apparatus protein EpaQ [Escherichia coli
O157:H7 str. EC4401]
gi|189363741|gb|EDU82160.1| type III secretion apparatus protein EpaQ [Escherichia coli
O157:H7 str. EC4486]
gi|189369218|gb|EDU87634.1| type III secretion apparatus protein EpaQ [Escherichia coli
O157:H7 str. EC4501]
gi|189373883|gb|EDU92299.1| type III secretion apparatus protein EpaQ [Escherichia coli
O157:H7 str. EC869]
gi|189377618|gb|EDU96034.1| type III secretion apparatus protein EpaQ [Escherichia coli
O157:H7 str. EC508]
gi|190903961|gb|EDV63674.1| type III secretion apparatus protein EpaQ [Escherichia coli B7A]
gi|192954863|gb|EDV85377.1| type III secretion apparatus protein EpaQ [Escherichia coli
E110019]
gi|208728202|gb|EDZ77803.1| type III secretion apparatus protein EpaQ [Escherichia coli
O157:H7 str. EC4206]
gi|208735385|gb|EDZ84072.1| type III secretion apparatus protein EpaQ [Escherichia coli
O157:H7 str. EC4045]
gi|208741040|gb|EDZ88722.1| type III secretion apparatus protein EpaQ [Escherichia coli
O157:H7 str. EC4042]
gi|209161240|gb|ACI38673.1| type III secretion apparatus protein EpaQ [Escherichia coli
O157:H7 str. EC4115]
gi|217319138|gb|EEC27563.1| type III secretion apparatus protein EpaQ [Escherichia coli
O157:H7 str. TW14588]
gi|254594205|gb|ACT73566.1| type III secretion apparatus protein [Escherichia coli O157:H7
str. TW14359]
gi|257755625|dbj|BAI27127.1| type III secretion protein EpaQ [Escherichia coli O26:H11 str.
11368]
gi|257765895|dbj|BAI37390.1| type III secretion protein EpaQ [Escherichia coli O111:H- str.
11128]
gi|284922802|emb|CBG35890.1| type III secretion system protein [Escherichia coli 042]
gi|291322274|gb|EFE61703.1| type III secretion protein SctS [Escherichia coli B088]
gi|291426359|gb|EFE99391.1| antigen surface presentation protein SpaQ [Escherichia coli
FVEC1412]
gi|291432296|gb|EFF05278.1| type III secretion protein SctS [Escherichia coli B185]
gi|291468982|gb|EFF11473.1| hypothetical protein ECEG_02216 [Escherichia coli B354]
gi|298277228|gb|EFI18744.1| type III secretion protein SctS [Escherichia coli FVEC1302]
gi|299879819|gb|EFI88030.1| surface presentation of antigens protein SpaQ [Escherichia coli
MS 196-1]
gi|300315146|gb|EFJ64930.1| surface presentation of antigens protein SpaQ [Escherichia coli
MS 175-1]
gi|300358206|gb|EFJ74076.1| surface presentation of antigens protein SpaQ [Escherichia coli
MS 198-1]
gi|300394965|gb|EFJ78503.1| surface presentation of antigens protein SpaQ [Escherichia coli
MS 69-1]
gi|300450093|gb|EFK13713.1| surface presentation of antigens protein SpaQ [Escherichia coli
MS 116-1]
gi|300458660|gb|EFK22153.1| surface presentation of antigens protein SpaQ [Escherichia coli
MS 21-1]
gi|300526924|gb|EFK47993.1| surface presentation of antigens protein SpaQ [Escherichia coli
MS 119-7]
gi|301077833|gb|EFK92639.1| surface presentation of antigens protein SpaQ [Escherichia coli
MS 146-1]
gi|308122328|gb|EFO59590.1| surface presentation of antigens protein SpaQ [Escherichia coli
MS 145-7]
gi|309703221|emb|CBJ02556.1| type III secretion system protein [Escherichia coli ETEC H10407]
gi|320189198|gb|EFW63857.1| Surface presentation of antigens protein SpaQ [Escherichia coli
O157:H7 str. EC1212]
gi|323180304|gb|EFZ65856.1| epaQ [Escherichia coli 1180]
gi|323183414|gb|EFZ68811.1| epaQ [Escherichia coli 1357]
gi|323941618|gb|EGB37798.1| export protein 3 [Escherichia coli E482]
gi|323966654|gb|EGB62086.1| export protein 3 [Escherichia coli M863]
gi|323978519|gb|EGB73601.1| export protein 3 [Escherichia coli TW10509]
gi|326339061|gb|EGD62876.1| Surface presentation of antigens protein SpaQ [Escherichia coli
O157:H7 str. 1044]
gi|326343058|gb|EGD66826.1| Surface presentation of antigens protein SpaQ [Escherichia coli
O157:H7 str. 1125]
gi|327251615|gb|EGE63301.1| epaQ [Escherichia coli STEC_7v]
gi|331037020|gb|EGI09244.1| surface presentation of antigens protein SpaQ [Escherichia coli
H736]
gi|331058356|gb|EGI30337.1| surface presentation of antigens protein SpaQ [Escherichia coli
TA143]
gi|331063264|gb|EGI35177.1| surface presentation of antigens protein SpaQ [Escherichia coli
TA271]
gi|331068435|gb|EGI39830.1| surface presentation of antigens protein SpaQ [Escherichia coli
TA280]
gi|331073676|gb|EGI44997.1| surface presentation of antigens protein SpaQ [Escherichia coli
H591]
gi|332102806|gb|EGJ06152.1| type III secretion apparatus protein EpaQ [Shigella sp. D9]
gi|332344756|gb|AEE58090.1| Type III secretion apparatus protein EpaQ [Escherichia coli
UMNK88]
Length = 86
Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 44/79 (55%)
Query: 4 ADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLI 63
D++ A++ IL SA + A F+G+L+ Q +TQ+QE TL F K++ V I
Sbjct: 2 DDIVFAGNRALYLILVMSAGPIAVATFVGLLVGLFQTVTQLQEQTLPFGVKLLCVSICFF 61
Query: 64 ISAPFIGGQISSFVTLVLS 82
+ + + G ++ SF +L+
Sbjct: 62 LMSGWYGEKLYSFGIEMLN 80
>gi|163856447|ref|YP_001630745.1| flagellar biosynthesis protein FliQ [Bordetella petrii DSM 12804]
gi|163260175|emb|CAP42477.1| flagellar biosynthesis protein FliQ [Bordetella petrii]
Length = 89
Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 52/85 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + A+ L+ + P+L + +G++IA QA TQI E+TL+F+PK++A+
Sbjct: 1 MTAETVMSMTYQALKIALAMAGPLLLVTLAVGLVIAVFQAATQINEMTLSFIPKLLAMCG 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
L++ P++ G ++ ++ ++ +I
Sbjct: 61 VLVLMGPWLLGLMTDYIRQLIGQIP 85
>gi|291617859|ref|YP_003520601.1| FliQ [Pantoea ananatis LMG 20103]
gi|291152889|gb|ADD77473.1| FliQ [Pantoea ananatis LMG 20103]
Length = 108
Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 33/85 (38%), Positives = 52/85 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + + AM L +AP+L +A+ G+L++ LQA TQI E TL+F+PKIIAV
Sbjct: 20 MTPESVMVMGQEAMRVALLLAAPMLLAALVSGLLVSLLQAATQINEQTLSFIPKIIAVAT 79
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
T II+ P++ + ++ V S +
Sbjct: 80 TGIIAGPWMLNVLLDYIRTVFSNLP 104
>gi|89069820|ref|ZP_01157155.1| flagellar biosynthetic protein FliQ [Oceanicola granulosus
HTCC2516]
gi|89044621|gb|EAR50737.1| flagellar biosynthetic protein FliQ [Oceanicola granulosus
HTCC2516]
Length = 88
Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 48/81 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E+ ++ R +W ++ S P+L A+ G+ + QALT IQE+TLTFVPK+ A+
Sbjct: 1 MSESHFYDVVRHGLWVAVAMSLPILSVALVAGLAVGLFQALTSIQEMTLTFVPKLAAIVA 60
Query: 61 TLIISAPFIGGQISSFVTLVL 81
++ F+ G +++F L
Sbjct: 61 IFWVTMGFMTGTLTAFFRDTL 81
>gi|315498433|ref|YP_004087237.1| flagellar biosynthetic protein fliq [Asticcacaulis excentricus CB
48]
gi|315416445|gb|ADU13086.1| flagellar biosynthetic protein FliQ [Asticcacaulis excentricus CB
48]
Length = 87
Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 36/86 (41%), Positives = 54/86 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +VL + R A+W + APVL + +G++I QALTQIQE TL + PKIIAVF+
Sbjct: 1 MTGTEVLSVGRDAIWLTIQLCAPVLIVGLVVGVVIGLFQALTQIQEQTLIYAPKIIAVFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
TL++ P +G +S F+ + ++I
Sbjct: 61 TLLLVLPLMGALLSGFMKEIATKIAG 86
>gi|297569686|ref|YP_003691030.1| flagellar biosynthetic protein FliQ [Desulfurivibrio alkaliphilus
AHT2]
gi|296925601|gb|ADH86411.1| flagellar biosynthetic protein FliQ [Desulfurivibrio alkaliphilus
AHT2]
Length = 89
Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 53/88 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ ADV + + A+ L+ + P+L M +G+ IA QA+TQIQE+TLTFVPKI AV +
Sbjct: 1 MSPADVAVLIQQAVKVTLTLAGPILGMGMAVGLTIALFQAVTQIQEMTLTFVPKIFAVLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
T++ A ++ + + ++ I +
Sbjct: 61 TVLFLAGWMITVMVDYTHNLIVSIPGLI 88
>gi|332559804|ref|ZP_08414126.1| FliQ2 [Rhodobacter sphaeroides WS8N]
gi|332277516|gb|EGJ22831.1| FliQ2 [Rhodobacter sphaeroides WS8N]
Length = 88
Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 47/78 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E + + R +W + S+P+L A+ G+ I LQALT +QE+TLTFVPK+ A+ +
Sbjct: 1 MSELALYDALRQGLWVAVLISSPLLGVALVAGVTIGLLQALTSVQEMTLTFVPKVGAMLL 60
Query: 61 TLIISAPFIGGQISSFVT 78
+S F+ + +F T
Sbjct: 61 VFWVSMSFMTTTLVAFFT 78
>gi|295678048|ref|YP_003606572.1| flagellar biosynthetic protein FliQ [Burkholderia sp. CCGE1002]
gi|295437891|gb|ADG17061.1| flagellar biosynthetic protein FliQ [Burkholderia sp. CCGE1002]
Length = 89
Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 55/88 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ +A AM+ L +AP+L A+ +G++++ QA TQI E TL+F+PK++A+
Sbjct: 1 MTPEAVMTLAHHAMYIGLMMAAPLLLVALVVGLVVSLFQAATQINESTLSFIPKLLAIAA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
TL+I+ P++ + ++ L+ I + +
Sbjct: 61 TLVIAGPWMLTTMLDYLRQTLTSIPTLV 88
>gi|83858792|ref|ZP_00952314.1| flagellar biosynthesis protein [Oceanicaulis alexandrii HTCC2633]
gi|83853615|gb|EAP91467.1| flagellar biosynthesis protein [Oceanicaulis alexandrii HTCC2633]
Length = 87
Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 37/87 (42%), Positives = 57/87 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +VL+I A+W +L +APV+ + +G+LIA QALTQ+QE+TL FVPKII +F+
Sbjct: 1 MTAGEVLDIGAEAIWVMLGMAAPVMLIGLAVGVLIALFQALTQVQEMTLVFVPKIIVIFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
L+I P +G ++ F+ + RI +
Sbjct: 61 ALLIFLPMMGALLNGFMQTIADRIVAG 87
>gi|167750711|ref|ZP_02422838.1| hypothetical protein EUBSIR_01689 [Eubacterium siraeum DSM 15702]
gi|167656390|gb|EDS00520.1| hypothetical protein EUBSIR_01689 [Eubacterium siraeum DSM 15702]
Length = 96
Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 47/86 (54%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
+ + +E+ AA+ L PVL +A+ +G++IA LQA TQ+ E TL+F PK I V I
Sbjct: 7 LTQDIAMEVFTAALVLALKLGLPVLIAAVVIGLIIAILQAATQVHEQTLSFAPKAIVVAI 66
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
L++ P++ F + + +
Sbjct: 67 VLLLFGPWMMNSCIEFFNYIFGLMAT 92
>gi|109899341|ref|YP_662596.1| flagellar biosynthetic protein FliQ [Pseudoalteromonas atlantica
T6c]
gi|332305670|ref|YP_004433521.1| flagellar biosynthetic protein FliQ [Glaciecola agarilytica
4H-3-7+YE-5]
gi|109701622|gb|ABG41542.1| flagellar biosynthetic protein FliQ [Pseudoalteromonas atlantica
T6c]
gi|332172999|gb|AEE22253.1| flagellar biosynthetic protein FliQ [Glaciecola agarilytica
4H-3-7+YE-5]
Length = 89
Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 46/85 (54%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M ++I + A+ ++ + ++ ++F+G+++A QA T I E T++F+P++I +
Sbjct: 1 MAPEVFVDILKEALNMVILLVSAIILPSLFVGLIVAVFQAATSINEQTMSFLPRLIVTLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
L ++ Q+ F ++ RI
Sbjct: 61 ALSWGGHWLVQQLMDFTFTMVERIP 85
>gi|256024632|ref|ZP_05438497.1| type III secretion apparatus protein [Escherichia sp. 4_1_40B]
Length = 86
Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 44/79 (55%)
Query: 4 ADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLI 63
D++ A++ IL SA + A F+G+L+ Q +TQ+QE TL F K++ V I
Sbjct: 2 DDIVFAGNRALYLILVMSAGPIAVATFVGLLVGLFQTVTQLQEQTLPFGVKLLCVSICFF 61
Query: 64 ISAPFIGGQISSFVTLVLS 82
+ + + G ++ SF +L+
Sbjct: 62 LMSGWYGERLYSFGIEMLN 80
>gi|268316331|ref|YP_003290050.1| flagellar biosynthetic protein FliQ [Rhodothermus marinus DSM
4252]
gi|262333865|gb|ACY47662.1| flagellar biosynthetic protein FliQ [Rhodothermus marinus DSM
4252]
Length = 89
Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 52/86 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M L + A+ T L P+L A+ +G++++ LQA+T +QE+TL+++PKI+AV
Sbjct: 1 MTSEVALYWIQEALKTALLLVGPLLAVALIVGLIVSLLQAITSVQEMTLSYIPKILAVGF 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
L++ AP++ ++ F VL I +
Sbjct: 61 VLLLLAPWMLQMLTDFAVQVLQFIPN 86
>gi|167560942|ref|ZP_02353858.1| flagellar biosynthesis protein FliQ [Burkholderia oklahomensis
EO147]
gi|167568201|ref|ZP_02361075.1| flagellar biosynthesis protein FliQ [Burkholderia oklahomensis
C6786]
Length = 90
Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 57/86 (66%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +V+ +A AM+ L +AP+L A+ +G++++ QA TQI E TL+F+PK++AV
Sbjct: 1 MTPENVMTLAHQAMYIGLLLAAPLLLVALAVGLVVSLFQAATQINEATLSFIPKLLAVAA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
T++I+ P++ ++ ++ +L R+ +
Sbjct: 61 TMVIAGPWMLSTMTDYLREILLRVAT 86
>gi|182418348|ref|ZP_02949643.1| flagellar biosynthetic protein FliQ [Clostridium butyricum 5521]
gi|237666892|ref|ZP_04526877.1| export protein FliQ, family 3 [Clostridium butyricum E4 str. BoNT
E BL5262]
gi|182377730|gb|EDT75274.1| flagellar biosynthetic protein FliQ [Clostridium butyricum 5521]
gi|237658091|gb|EEP55646.1| export protein FliQ, family 3 [Clostridium butyricum E4 str. BoNT
E BL5262]
Length = 89
Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 48/85 (56%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E + + + + T + AP+L + LG++I+ +QA TQIQE TLTFVPK+IA I
Sbjct: 1 MSEIMLNGVVKDTVVTAIKVGAPILIVVLVLGLIISIIQATTQIQEQTLTFVPKLIATAI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
+I ++ + SF + I
Sbjct: 61 VGLILGNWMLHTVISFTNRIFDMIA 85
>gi|259907617|ref|YP_002647973.1| Flagellar biosynthetic protein FliQ [Erwinia pyrifoliae Ep1/96]
gi|224963239|emb|CAX54723.1| Flagellar biosynthetic protein FliQ [Erwinia pyrifoliae Ep1/96]
gi|283477459|emb|CAY73375.1| Flagellar biosynthetic protein FliQ [Erwinia pyrifoliae DSM
12163]
Length = 89
Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 47/85 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + A+ L + P+L +A+ G++I+ LQA TQI E+T+TF+PKI+ +
Sbjct: 1 MTPESVMALGIQAIKLGLMVAGPLLLAALATGLIISILQAATQINEMTMTFIPKILVIIG 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
++ P++ + L L+ I
Sbjct: 61 VAVVLGPWMMRNFIEYTRLTLTNIP 85
>gi|83647783|ref|YP_436218.1| type III secretory pathway subunit EscS [Hahella chejuensis KCTC
2396]
gi|83635826|gb|ABC31793.1| Type III secretory pathway, component EscS [Hahella chejuensis
KCTC 2396]
Length = 90
Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 55/85 (64%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+EA+V+ A + +L S P + A +G L++ +Q+LTQIQ+ TL+F K+IAV I
Sbjct: 1 MSEAEVIHYASQLLMLVLVLSMPTVIVAAVVGTLVSLVQSLTQIQDQTLSFAIKLIAVSI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
T++++A ++G +I F +L I+
Sbjct: 61 TIMLTARWLGIEIYHFSMNILDHIE 85
>gi|77464906|ref|YP_354410.1| flagellar biosynthetic protein FliQ [Rhodobacter sphaeroides
2.4.1]
gi|126463748|ref|YP_001044862.1| export protein FliQ [Rhodobacter sphaeroides ATCC 17029]
gi|221640827|ref|YP_002527089.1| Export protein FliQ, family 3 [Rhodobacter sphaeroides KD131]
gi|77389324|gb|ABA80509.1| flagellar biosynthetic protein FliQ [Rhodobacter sphaeroides
2.4.1]
gi|126105412|gb|ABN78090.1| export protein FliQ, family 3 [Rhodobacter sphaeroides ATCC
17029]
gi|221161608|gb|ACM02588.1| Export protein FliQ, family 3 [Rhodobacter sphaeroides KD131]
Length = 88
Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 47/78 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E + + R +W + S+P+L A+ G+ I LQALT +QE+TLTFVPK+ A+ +
Sbjct: 1 MSELALYDALRQGLWVAVLISSPLLGVALVAGVTIGLLQALTSVQEMTLTFVPKVGAMLL 60
Query: 61 TLIISAPFIGGQISSFVT 78
+S F+ + +F T
Sbjct: 61 VFWVSMSFMTTTLVAFFT 78
>gi|254504458|ref|ZP_05116609.1| flagellar biosynthetic protein FliQ [Labrenzia alexandrii DFL-11]
gi|222440529|gb|EEE47208.1| flagellar biosynthetic protein FliQ [Labrenzia alexandrii DFL-11]
Length = 90
Score = 57.6 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 35/84 (41%), Positives = 58/84 (69%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +VL++AR+A+W ++ + P + + +G++IA QALTQIQE+TL FVPKI+A+F+
Sbjct: 1 MTGPEVLDLARSAVWAMILIAGPTMVIGLLVGVIIALFQALTQIQEMTLVFVPKILAIFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
TL++S PF+ + F+ + I
Sbjct: 61 TLLLSLPFMSQVLEGFMAEIAEMI 84
>gi|22126370|ref|NP_669793.1| flagellar biosynthesis protein FliQ [Yersinia pestis KIM 10]
gi|45441391|ref|NP_992930.1| flagellar biosynthesis protein FliQ [Yersinia pestis biovar
Microtus str. 91001]
gi|51596028|ref|YP_070219.1| flagellar biosynthesis protein FliQ [Yersinia pseudotuberculosis
IP 32953]
gi|108807191|ref|YP_651107.1| flagellar biosynthesis protein FliQ [Yersinia pestis Antiqua]
gi|108812465|ref|YP_648232.1| flagellar biosynthesis protein FliQ [Yersinia pestis Nepal516]
gi|145598593|ref|YP_001162669.1| flagellar biosynthesis protein FliQ [Yersinia pestis Pestoides F]
gi|149366233|ref|ZP_01888268.1| flagellar biosynthetic protein FliQ [Yersinia pestis CA88-4125]
gi|153949470|ref|YP_001401272.1| flagellar biosynthesis protein FliQ [Yersinia pseudotuberculosis
IP 31758]
gi|165925897|ref|ZP_02221729.1| flagellar biosynthetic protein FliQ [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165938709|ref|ZP_02227264.1| flagellar biosynthetic protein FliQ [Yersinia pestis biovar
Orientalis str. IP275]
gi|166010877|ref|ZP_02231775.1| flagellar biosynthetic protein FliQ [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166211004|ref|ZP_02237039.1| flagellar biosynthetic protein FliQ [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167401174|ref|ZP_02306677.1| flagellar biosynthetic protein FliQ [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167420108|ref|ZP_02311861.1| flagellar biosynthetic protein FliQ [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167425867|ref|ZP_02317620.1| flagellar biosynthetic protein FliQ [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|167467509|ref|ZP_02332213.1| flagellar biosynthetic protein FliQ [Yersinia pestis FV-1]
gi|170024628|ref|YP_001721133.1| flagellar biosynthesis protein FliQ [Yersinia pseudotuberculosis
YPIII]
gi|186895133|ref|YP_001872245.1| flagellar biosynthesis protein FliQ [Yersinia pseudotuberculosis
PB1/+]
gi|218928940|ref|YP_002346815.1| flagellar biosynthesis protein FliQ [Yersinia pestis CO92]
gi|229896264|ref|ZP_04511434.1| flagellar biosynthetic protein FliQ [Yersinia pestis Pestoides A]
gi|229897201|ref|ZP_04512357.1| flagellar biosynthetic protein FliQ [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229897928|ref|ZP_04513079.1| flagellar biosynthetic protein FliQ [Yersinia pestis biovar
Orientalis str. India 195]
gi|229902841|ref|ZP_04517958.1| flagellar biosynthetic protein FliQ [Yersinia pestis Nepal516]
gi|270486628|ref|ZP_06203702.1| flagellar biosynthetic protein FliQ [Yersinia pestis KIM D27]
gi|21959355|gb|AAM86044.1|AE013852_6 flagellar biosynthesis protein [Yersinia pestis KIM 10]
gi|45436251|gb|AAS61807.1| flagellar biosynthetic protein FliQ [Yersinia pestis biovar
Microtus str. 91001]
gi|51589310|emb|CAH20931.1| flagellar biosynthetic protein FliQ [Yersinia pseudotuberculosis
IP 32953]
gi|108776113|gb|ABG18632.1| flagellar biosynthetic protein FliQ [Yersinia pestis Nepal516]
gi|108779104|gb|ABG13162.1| flagellar biosynthetic protein FliQ [Yersinia pestis Antiqua]
gi|115347551|emb|CAL20460.1| flagellar biosynthetic protein FliQ [Yersinia pestis CO92]
gi|145210289|gb|ABP39696.1| flagellar biosynthetic protein FliQ [Yersinia pestis Pestoides F]
gi|149292646|gb|EDM42720.1| flagellar biosynthetic protein FliQ [Yersinia pestis CA88-4125]
gi|152960965|gb|ABS48426.1| flagellar biosynthetic protein FliQ [Yersinia pseudotuberculosis
IP 31758]
gi|165913323|gb|EDR31945.1| flagellar biosynthetic protein FliQ [Yersinia pestis biovar
Orientalis str. IP275]
gi|165922101|gb|EDR39278.1| flagellar biosynthetic protein FliQ [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165990221|gb|EDR42522.1| flagellar biosynthetic protein FliQ [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166208184|gb|EDR52664.1| flagellar biosynthetic protein FliQ [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166961803|gb|EDR57824.1| flagellar biosynthetic protein FliQ [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167049563|gb|EDR60971.1| flagellar biosynthetic protein FliQ [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167055266|gb|EDR65063.1| flagellar biosynthetic protein FliQ [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|169751162|gb|ACA68680.1| flagellar biosynthetic protein FliQ [Yersinia pseudotuberculosis
YPIII]
gi|186698159|gb|ACC88788.1| flagellar biosynthetic protein FliQ [Yersinia pseudotuberculosis
PB1/+]
gi|229680288|gb|EEO76387.1| flagellar biosynthetic protein FliQ [Yersinia pestis Nepal516]
gi|229688969|gb|EEO81034.1| flagellar biosynthetic protein FliQ [Yersinia pestis biovar
Orientalis str. India 195]
gi|229693538|gb|EEO83587.1| flagellar biosynthetic protein FliQ [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229701187|gb|EEO89216.1| flagellar biosynthetic protein FliQ [Yersinia pestis Pestoides A]
gi|270335132|gb|EFA45909.1| flagellar biosynthetic protein FliQ [Yersinia pestis KIM D27]
gi|320015443|gb|ADV99014.1| flagellar biosynthetic protein FliQ [Yersinia pestis biovar
Medievalis str. Harbin 35]
Length = 89
Score = 57.6 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 57/88 (64%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + AM L+ +AP+L +A+ G++++ LQA TQI E+TL+F+PKI+AVF
Sbjct: 1 MTPESVMALGTEAMKIALALAAPLLLAALISGLIVSLLQAATQINEMTLSFIPKILAVFT 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
T++I+ P++ I ++ + + + + +
Sbjct: 61 TMVIAGPWMLNLILDYMRNLFTSLPTLI 88
>gi|126175117|ref|YP_001051266.1| flagellar biosynthetic protein FliQ [Shewanella baltica OS155]
gi|153001441|ref|YP_001367122.1| flagellar biosynthetic protein FliQ [Shewanella baltica OS185]
gi|160876166|ref|YP_001555482.1| flagellar biosynthetic protein FliQ [Shewanella baltica OS195]
gi|304409948|ref|ZP_07391567.1| flagellar biosynthetic protein FliQ [Shewanella baltica OS183]
gi|307302339|ref|ZP_07582097.1| flagellar biosynthetic protein FliQ [Shewanella baltica BA175]
gi|125998322|gb|ABN62397.1| flagellar biosynthetic protein FliQ [Shewanella baltica OS155]
gi|151366059|gb|ABS09059.1| flagellar biosynthetic protein FliQ [Shewanella baltica OS185]
gi|160861688|gb|ABX50222.1| flagellar biosynthetic protein FliQ [Shewanella baltica OS195]
gi|304351357|gb|EFM15756.1| flagellar biosynthetic protein FliQ [Shewanella baltica OS183]
gi|306914377|gb|EFN44798.1| flagellar biosynthetic protein FliQ [Shewanella baltica BA175]
gi|315268362|gb|ADT95215.1| flagellar biosynthetic protein FliQ [Shewanella baltica OS678]
Length = 89
Score = 57.6 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 46/85 (54%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ +++I R A+ I+ + ++ + +G+++A QA T I E TL+F+P+++
Sbjct: 1 MSPEALIDIFREALAVIVMMVSAIVLPGLGIGLIVAVFQAATSINEQTLSFLPRLLVTLF 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
L+ ++ + F +++RI
Sbjct: 61 GLMFMGHWLVETLMDFFVEMVNRIP 85
>gi|84388122|ref|ZP_00991018.1| flagellar biosynthesis protein [Vibrio splendidus 12B01]
gi|84377189|gb|EAP94059.1| flagellar biosynthesis protein [Vibrio splendidus 12B01]
Length = 89
Score = 57.6 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 49/88 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN +E+ R A+W +L ++ ++ +G+++A QA T I E TL+F+P++I +
Sbjct: 1 MNPEIFVELFRDALWMVLIMVCAIIIPSLLIGLVVAVFQAATSINEQTLSFLPRLIVTLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L++ A ++ + F ++ R+ L
Sbjct: 61 ALMMFAHWMTQMMMEFFFELIERLPQVL 88
>gi|316932836|ref|YP_004107818.1| export protein FliQ family 3 [Rhodopseudomonas palustris DX-1]
gi|315600550|gb|ADU43085.1| export protein FliQ family 3 [Rhodopseudomonas palustris DX-1]
Length = 87
Score = 57.6 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 37/87 (42%), Positives = 60/87 (68%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + L++AR A+WTI+ SAP++ + +G+ ++ +QALTQIQE TL FVPKI+A+FI
Sbjct: 1 MTGPETLDVARDAIWTIVVVSAPLMVVGLVVGVAVSLVQALTQIQEQTLVFVPKILAMFI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
TL+++ PF+ + + + + SRI
Sbjct: 61 TLVLALPFMADALHAQMLRISSRIIGG 87
>gi|213025464|ref|ZP_03339911.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Typhi str. 404ty]
Length = 82
Score = 57.6 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 30/76 (39%), Positives = 50/76 (65%)
Query: 10 ARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
AM L+ +AP+L A+ G++I+ LQA TQI E+TL+F+PKI+AVFI +I++ P++
Sbjct: 3 GTEAMKVALALAAPLLLVALITGLIISILQAATQINEMTLSFIPKIVAVFIAIIVAGPWM 62
Query: 70 GGQISSFVTLVLSRIQ 85
+ +V + S +
Sbjct: 63 LNLLLDYVRTLFSNLP 78
>gi|119384845|ref|YP_915901.1| export protein FliQ [Paracoccus denitrificans PD1222]
gi|119374612|gb|ABL70205.1| export protein FliQ, family 3 [Paracoccus denitrificans PD1222]
Length = 88
Score = 57.6 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 31/78 (39%), Positives = 49/78 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E + ++ R A+W + SAP+L A+ G++I QALT +QE+TLTFVPKI + +
Sbjct: 1 MDENLIFDLTRQALWIAVRMSAPLLIVALVTGVVIGLFQALTSVQEMTLTFVPKIGLMLV 60
Query: 61 TLIISAPFIGGQISSFVT 78
+S F+ ++SF T
Sbjct: 61 VFWVSMSFMTATLASFFT 78
>gi|332526332|ref|ZP_08402459.1| hypothetical protein RBXJA2T_10721 [Rubrivivax benzoatilyticus
JA2]
gi|332110469|gb|EGJ10792.1| hypothetical protein RBXJA2T_10721 [Rubrivivax benzoatilyticus
JA2]
Length = 91
Score = 57.6 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 51/85 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ ++ +++ A+W +L SAP + A +G+LIA +QA TQIQE T + K+ A+ +
Sbjct: 1 MSGSEAMQLTLQALWLVLLLSAPPVLVAAVVGLLIAIVQAATQIQEQTFQYAAKLFAIVL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
T+ ++A +GG + +F + S
Sbjct: 61 TIFVTAALLGGTLYAFGDRLFSEFP 85
>gi|123442775|ref|YP_001006752.1| flagellar biosynthesis protein FliQ [Yersinia enterocolitica
subsp. enterocolitica 8081]
gi|332161331|ref|YP_004297908.1| flagellar biosynthesis protein FliQ [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|122089736|emb|CAL12589.1| flagellar biosynthetic protein FliQ [Yersinia enterocolitica
subsp. enterocolitica 8081]
gi|318605252|emb|CBY26750.1| flagellar biosynthesis protein FliQ [Yersinia enterocolitica
subsp. palearctica Y11]
gi|325665561|gb|ADZ42205.1| flagellar biosynthesis protein FliQ [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|330861095|emb|CBX71362.1| flagellar biosynthetic protein fliQ [Yersinia enterocolitica
W22703]
Length = 89
Score = 57.6 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 57/88 (64%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + AM L+ +AP+L +A+ G++++ LQA TQI E+TL+F+PKI+AVF
Sbjct: 1 MTPESVMALGVEAMKIALALAAPLLLAALVSGLIVSLLQAATQINEMTLSFIPKILAVFA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
TL+I+ P++ I ++ + + + + +
Sbjct: 61 TLVIAGPWMLSLILDYMRNLFTSLPTLI 88
>gi|77165626|ref|YP_344151.1| flagellar biosynthesis protein FliQ [Nitrosococcus oceani ATCC
19707]
gi|254434890|ref|ZP_05048398.1| flagellar biosynthetic protein FliQ [Nitrosococcus oceani AFC27]
gi|300113614|ref|YP_003760189.1| flagellar biosynthetic protein FliQ [Nitrosococcus watsonii
C-113]
gi|76883940|gb|ABA58621.1| Flagellar biosynthesis protein FliQ [Nitrosococcus oceani ATCC
19707]
gi|207091223|gb|EDZ68494.1| flagellar biosynthetic protein FliQ [Nitrosococcus oceani AFC27]
gi|299539551|gb|ADJ27868.1| flagellar biosynthetic protein FliQ [Nitrosococcus watsonii
C-113]
Length = 89
Score = 57.6 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 50/88 (56%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M VL + R ++ + A +L ++ +G+L++ QA TQI E+TL+F+PK++AV +
Sbjct: 1 MTADIVLSLLRHSLELLALLLAVLLLPSLAVGVLVSMFQAATQINEMTLSFIPKLLAVLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
TL ++ P++ + + I + +
Sbjct: 61 TLGLAGPWMLQLVLDHSRQIFENIPTLI 88
>gi|84785896|gb|ABC62087.1| secretion and cellular translocation protein S [Chlamydophila
psittaci]
Length = 94
Score = 57.6 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 44/80 (55%)
Query: 4 ADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLI 63
+ + E + ++ IL SAP + A +GI++A QA TQIQE T F K++ +F TL+
Sbjct: 10 SMLFEYSYQSLLLILIISAPPIILASIVGIMVAIFQAATQIQEQTFAFAIKLVVIFGTLM 69
Query: 64 ISAPFIGGQISSFVTLVLSR 83
IS ++ I F + +
Sbjct: 70 ISGGWLSNMIFRFASQIFQN 89
>gi|319787089|ref|YP_004146564.1| export protein FliQ family 3 [Pseudoxanthomonas suwonensis 11-1]
gi|317465601|gb|ADV27333.1| export protein FliQ family 3 [Pseudoxanthomonas suwonensis 11-1]
Length = 89
Score = 57.6 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 39/88 (44%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ L R + L P+L + +G+++ +QA TQI E T+ FV K + +
Sbjct: 1 MSPELALTELRRGLEVALWVGGPLLLIMLAVGVIVGIVQAATQINEPTIAFVTKAVTLTA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+ F+ + + T + RI +
Sbjct: 61 AMFAMGSFLLAYLVDYTTTLFQRIPHLI 88
>gi|315140249|gb|ADT81119.1| RscS [Pseudomonas fluorescens]
Length = 84
Score = 57.6 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 49/82 (59%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
D L + + M ++ SAP L A+ +G+L + +QAL QIQ+ TL F K++AV +TL++
Sbjct: 2 DALTLFKEGMLLVVLLSAPPLIVAVIVGVLTSLVQALMQIQDQTLPFGIKLVAVGLTLLV 61
Query: 65 SAPFIGGQISSFVTLVLSRIQS 86
+ +IGG++ + + +
Sbjct: 62 TGRWIGGELLGLLRRAFEMMAN 83
>gi|296531767|ref|ZP_06894589.1| flagellar biosynthesis protein FliQ [Roseomonas cervicalis ATCC
49957]
gi|296267906|gb|EFH13711.1| flagellar biosynthesis protein FliQ [Roseomonas cervicalis ATCC
49957]
Length = 87
Score = 57.6 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 50/84 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M E DV+EI R + + + P L +A+ G+ ++ LQALTQIQE+TL++VPKI+ +
Sbjct: 1 MQEGDVIEILRGGFYATMMVAGPPLLAALITGVAVSVLQALTQIQEMTLSYVPKIVVTLV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
++S PF + S+ + I
Sbjct: 61 ATMLSLPFGFAALRSYTEEIAQLI 84
>gi|262276384|ref|ZP_06054193.1| flagellar biosynthesis protein FliQ [Grimontia hollisae CIP
101886]
gi|262220192|gb|EEY71508.1| flagellar biosynthesis protein FliQ [Grimontia hollisae CIP
101886]
Length = 89
Score = 57.6 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 46/88 (52%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +E+ + A++ IL ++ + +G+L+A QA T I E TL+F+P++IA +
Sbjct: 1 MAPEAFVELFQDALYLILIMVCAIIIPGLIVGLLVAIFQAATSINEQTLSFLPRLIATLV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L++ ++ + + ++ I L
Sbjct: 61 ALMVFGHWMTRMLMEYFFRLVEEIPMLL 88
>gi|300906600|ref|ZP_07124291.1| surface presentation of antigens protein SpaQ [Escherichia coli
MS 84-1]
gi|71388158|gb|AAZ31292.1| EpaQ [Escherichia coli]
gi|300401639|gb|EFJ85177.1| surface presentation of antigens protein SpaQ [Escherichia coli
MS 84-1]
gi|315256733|gb|EFU36701.1| surface presentation of antigens protein SpaQ [Escherichia coli
MS 85-1]
Length = 86
Score = 57.6 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 44/78 (56%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
D++ A++ IL SA + A F+G+L+ Q +TQ+QE TL F K++ V I +
Sbjct: 3 DIVFAGNRALYLILVMSAGPIAVATFVGLLVGLFQTVTQLQEQTLPFGVKLLCVSICFFL 62
Query: 65 SAPFIGGQISSFVTLVLS 82
+ + G ++ SF +L+
Sbjct: 63 MSGWYGEKLYSFGIEMLN 80
>gi|62185508|ref|YP_220293.1| putative type III export protein [Chlamydophila abortus S26/3]
gi|329943277|ref|ZP_08292051.1| type III secretion , HrpO family protein [Chlamydophila psittaci
Cal10]
gi|332287855|ref|YP_004422756.1| secretion and cellular translocation protein S [Chlamydophila
psittaci 6BC]
gi|62148575|emb|CAH64347.1| putative type III export protein [Chlamydophila abortus S26/3]
gi|313848427|emb|CBY17431.1| putative type III export protein [Chlamydophila psittaci RD1]
gi|325507124|gb|ADZ18762.1| secretion and cellular translocation protein S [Chlamydophila
psittaci 6BC]
gi|328814824|gb|EGF84814.1| type III secretion , HrpO family protein [Chlamydophila psittaci
Cal10]
gi|328915117|gb|AEB55950.1| type III secretion system protein BsaX [Chlamydophila psittaci
6BC]
Length = 94
Score = 57.6 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 44/80 (55%)
Query: 4 ADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLI 63
+ + E + ++ IL SAP + A +GI++A QA TQIQE T F K++ +F TL+
Sbjct: 10 SMLFEYSYQSLLLILIISAPPIILASIVGIMVAIFQAATQIQEQTFAFAIKLVVIFGTLM 69
Query: 64 ISAPFIGGQISSFVTLVLSR 83
IS ++ I F + +
Sbjct: 70 ISGGWLSNMIFRFASQIFQN 89
>gi|254469622|ref|ZP_05083027.1| type III secretion protein, HrpO family [Pseudovibrio sp. JE062]
gi|211961457|gb|EEA96652.1| type III secretion protein, HrpO family [Pseudovibrio sp. JE062]
Length = 89
Score = 57.6 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 47/88 (53%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ D + AM ++ S P + A +G+ ++ LQALTQ+QE T+ F K+IAV +
Sbjct: 1 MSPEDAVYRISEAMILVMMLSLPPIIVASLVGLAVSLLQALTQMQEQTIQFGVKLIAVAL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
TL + + F+G + F + + +
Sbjct: 61 TLFMMSSFLGSETIGFTQALFDDFPTLV 88
>gi|115379094|ref|ZP_01466218.1| flagellar biosynthetic protein FliQ [Stigmatella aurantiaca
DW4/3-1]
gi|310823553|ref|YP_003955911.1| export protein fliq, family 3 [Stigmatella aurantiaca DW4/3-1]
gi|115363877|gb|EAU62988.1| flagellar biosynthetic protein FliQ [Stigmatella aurantiaca
DW4/3-1]
gi|309396625|gb|ADO74084.1| export protein FliQ, family 3 [Stigmatella aurantiaca DW4/3-1]
Length = 89
Score = 57.6 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 53/85 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + +L + R A+ ++ +S P + +++ +G L++ QA TQ+QE TL+ VPK+ A +
Sbjct: 1 MTQDLLLAVGREALLLMVLASLPPVGASLVVGFLMSLFQATTQLQESTLSVVPKLGASVL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
L+++ P+I Q++ F +L+ I
Sbjct: 61 ALVLAGPWIAAQLTLFTRQLLTLIA 85
>gi|68164509|gb|AAY87238.1| predicted flagellar biosynthesis protein [uncultured bacterium
BAC17H8]
Length = 88
Score = 57.6 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 51/84 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ +E R A W I+ ++ P+L A+ +G+LI +QA T I E+TL+FVPK++ V +
Sbjct: 1 MDFDSNVEFLRIAFWQIIMAAGPLLAVALAVGLLIGIIQAATSINEMTLSFVPKLVVVIL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
T + + F+ Q+S + + +I
Sbjct: 61 TFGLMSSFMLAQLSEYFQFIFDQI 84
>gi|313681179|ref|YP_004058917.1| flagellar biosynthetic protein fliq [Sulfuricurvum kujiense DSM
16994]
gi|313154039|gb|ADR32717.1| flagellar biosynthetic protein FliQ [Sulfuricurvum kujiense DSM
16994]
Length = 89
Score = 57.6 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 51/88 (57%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +++++ + L S P L MFLG+ ++ QA TQI E+TL+F+PKII + +
Sbjct: 1 MVQSELIGLGIETFKIALILSLPALLVGMFLGLAVSIFQATTQINEMTLSFIPKIIGIVV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+I++ P++ ++ F + + I + +
Sbjct: 61 VIILTMPWMMNEMQDFTIRMFNLIPTFM 88
>gi|307718615|ref|YP_003874147.1| flagellar biosynthesis protein [Spirochaeta thermophila DSM 6192]
gi|306532340|gb|ADN01874.1| flagellar biosynthesis protein [Spirochaeta thermophila DSM 6192]
gi|315186372|gb|EFU20132.1| flagellar biosynthetic protein FliQ [Spirochaeta thermophila DSM
6578]
Length = 89
Score = 57.6 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 51/85 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + + + R+ ++ ++ +AP+L M +G++++ QA T IQE TLTFVPKI+A+ +
Sbjct: 1 MGLGEAIYLLRSGIYELIVIAAPLLLVGMLVGLIVSIFQATTSIQEQTLTFVPKILAILL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
L++ P++ +S F + I
Sbjct: 61 VLLLLGPWMLSSLSQFTVHLFQMIP 85
>gi|325981180|ref|YP_004293582.1| flagellar biosynthetic protein FliQ [Nitrosomonas sp. AL212]
gi|325530699|gb|ADZ25420.1| flagellar biosynthetic protein FliQ [Nitrosomonas sp. AL212]
Length = 90
Score = 57.6 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 52/85 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + I R A+ SAP+L +A+ G+L++ QA TQI E+TL+F+PK++ +F+
Sbjct: 1 MTPEGAMTIGRQALEITFMVSAPLLLAALATGLLVSIFQAATQINEMTLSFIPKLLVMFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
++++ P++ ++ ++ + + I
Sbjct: 61 VMVLAGPWMIAVMTDYMQRLFTSIP 85
>gi|283785719|ref|YP_003365584.1| flagellar biosynthesis protein FliQ [Citrobacter rodentium
ICC168]
gi|282949173|emb|CBG88781.1| flagellar biosynthesis protein FliQ [Citrobacter rodentium
ICC168]
Length = 89
Score = 57.2 bits (137), Expect = 7e-07, Method: Composition-based stats.
Identities = 33/85 (38%), Positives = 52/85 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ I AM LS +AP+L A+ G+ I+ LQA TQI E+TL+F+PKI+AVF
Sbjct: 1 MTPESVMMIGTEAMKVALSLAAPLLLVALVTGLTISILQAATQINEMTLSFIPKIVAVFT 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
+II+ P++ + +V + + +
Sbjct: 61 AIIIAGPWMLNLLLDYVRTLFTNLP 85
>gi|217972627|ref|YP_002357378.1| flagellar biosynthetic protein FliQ [Shewanella baltica OS223]
gi|217497762|gb|ACK45955.1| flagellar biosynthetic protein FliQ [Shewanella baltica OS223]
Length = 89
Score = 57.2 bits (137), Expect = 7e-07, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 46/85 (54%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ +++I R A+ I+ + ++ + +G+++A QA T I E TL+F+P+++
Sbjct: 1 MSPEALIDIFREALAVIVMMVSAIVLPGLGIGLIVAVFQAATSINEQTLSFLPRLLVTLF 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
L+ ++ + F +++RI
Sbjct: 61 GLMFMGHWLVETLMDFFIEMVNRIP 85
>gi|260598458|ref|YP_003211029.1| flagellar biosynthesis protein FliQ [Cronobacter turicensis
z3032]
gi|260217635|emb|CBA31935.1| Flagellar biosynthetic protein fliQ [Cronobacter turicensis
z3032]
Length = 89
Score = 57.2 bits (137), Expect = 7e-07, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 52/85 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + AM L+ +AP+L A+ G+ I+ LQA TQI E+TL+F+PKI+AVF+
Sbjct: 1 MTPESVMMMGTEAMKVALALAAPLLLVALVTGLFISILQAATQINEMTLSFIPKILAVFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
++ + P++ + ++ + S +
Sbjct: 61 VIVAAGPWMLNLLLDYMRTLFSNLP 85
>gi|254973926|ref|ZP_05270398.1| flagellar export protein [Clostridium difficile QCD-66c26]
gi|255091313|ref|ZP_05320791.1| flagellar export protein [Clostridium difficile CIP 107932]
gi|255305287|ref|ZP_05349459.1| flagellar export protein [Clostridium difficile ATCC 43255]
gi|255312970|ref|ZP_05354553.1| flagellar export protein [Clostridium difficile QCD-76w55]
gi|255515729|ref|ZP_05383405.1| flagellar export protein [Clostridium difficile QCD-97b34]
gi|255648823|ref|ZP_05395725.1| flagellar export protein [Clostridium difficile QCD-37x79]
gi|260682042|ref|YP_003213327.1| flagellar export protein [Clostridium difficile CD196]
gi|260685640|ref|YP_003216773.1| flagellar export protein [Clostridium difficile R20291]
gi|306518938|ref|ZP_07405285.1| flagellar export protein [Clostridium difficile QCD-32g58]
gi|260208205|emb|CBA60556.1| flagellar export protein [Clostridium difficile CD196]
gi|260211656|emb|CBE01919.1| flagellar export protein [Clostridium difficile R20291]
Length = 89
Score = 57.2 bits (137), Expect = 7e-07, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 53/84 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E ++ + + M+T +APVL ++ +G+LI+ QA TQIQE TLTFVPK+IA+ +
Sbjct: 1 MSEFMIMSVLKNGMFTGAMIAAPVLIVSLVVGLLISVFQATTQIQEQTLTFVPKLIAILL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
+ I ++ + SF + + + +
Sbjct: 61 VVAIGGSWMLHTLISFTSEIFNMM 84
>gi|83814167|ref|YP_446685.1| flagellar biosynthetic protein FliQ [Salinibacter ruber DSM
13855]
gi|294508621|ref|YP_003572680.1| flagellar biosynthetic protein fliQ [Salinibacter ruber M8]
gi|83755561|gb|ABC43674.1| flagellar biosynthetic protein FliQ [Salinibacter ruber DSM
13855]
gi|294344950|emb|CBH25728.1| Flagellar biosynthetic protein fliQ [Salinibacter ruber M8]
Length = 89
Score = 57.2 bits (137), Expect = 7e-07, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 47/86 (54%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN + + ++ T P+L A+ GI+++ QA+T +QE+TL+F+PK+IA+ +
Sbjct: 1 MNADVAVYWLKESLRTGFMVLGPMLGMALLAGIVVSLFQAVTSMQEMTLSFIPKLIAIAV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
P++ ++ F + + I S
Sbjct: 61 VFFFMMPWMIQMMTDFTAEIFAAIPS 86
>gi|91976174|ref|YP_568833.1| flagellar biosynthesis protein FliQ [Rhodopseudomonas palustris
BisB5]
gi|91682630|gb|ABE38932.1| export protein FliQ, family 3 [Rhodopseudomonas palustris BisB5]
Length = 87
Score = 57.2 bits (137), Expect = 7e-07, Method: Composition-based stats.
Identities = 34/87 (39%), Positives = 58/87 (66%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + L++AR A+WTI+ S P++ + +G+ ++ +QALTQIQE TL FVPKI+A+F+
Sbjct: 1 MTGPETLDVARDAVWTIVIVSTPLMVVGLVVGVAVSLVQALTQIQEQTLVFVPKILAMFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
T +++ PF+ + + + + SRI
Sbjct: 61 TFVLTLPFMADVLHAEMLRISSRIIGG 87
>gi|16760924|ref|NP_456541.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|16765318|ref|NP_460933.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|29141384|ref|NP_804726.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|56413107|ref|YP_150182.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|62180555|ref|YP_216972.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|161502898|ref|YP_001570010.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|161613451|ref|YP_001587416.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|167552787|ref|ZP_02346538.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|167993555|ref|ZP_02574649.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|168234153|ref|ZP_02659211.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|168239220|ref|ZP_02664278.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|168244831|ref|ZP_02669763.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|168462478|ref|ZP_02696409.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|168823023|ref|ZP_02835023.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|194449608|ref|YP_002046031.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194472466|ref|ZP_03078450.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194735991|ref|YP_002115014.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|197251669|ref|YP_002146043.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197263534|ref|ZP_03163608.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|197362033|ref|YP_002141670.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|198244495|ref|YP_002215106.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|200390543|ref|ZP_03217154.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|204931093|ref|ZP_03221919.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|207856507|ref|YP_002243158.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|213163375|ref|ZP_03349085.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Typhi str. E00-7866]
gi|213417181|ref|ZP_03350325.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Typhi str. E01-6750]
gi|213424994|ref|ZP_03357744.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Typhi str. E02-1180]
gi|213584780|ref|ZP_03366606.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
gi|213612734|ref|ZP_03370560.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
gi|213650742|ref|ZP_03380795.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
gi|213855267|ref|ZP_03383507.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
gi|238912447|ref|ZP_04656284.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
gi|289829472|ref|ZP_06547084.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Typhi str. E98-3139]
gi|61224040|sp|P0A1L5|FLIQ_SALTY RecName: Full=Flagellar biosynthetic protein FliQ
gi|61224042|sp|P0A1L6|FLIQ_SALTI RecName: Full=Flagellar biosynthetic protein FliQ
gi|25303008|pir||AE0753 flagellar biosynthetic protein FliQ [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|1066864|gb|AAB81320.1| fliQ [Salmonella enterica subsp. enterica serovar Typhimurium]
gi|16420515|gb|AAL20892.1| flagellar biosynthesis protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|16503221|emb|CAD05728.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Typhi]
gi|29137011|gb|AAO68575.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|56127364|gb|AAV76870.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|62128188|gb|AAX65891.1| flagellar biosynthesis [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|160864245|gb|ABX20868.1| hypothetical protein SARI_00957 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
gi|161362815|gb|ABX66583.1| hypothetical protein SPAB_01168 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194407912|gb|ACF68131.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194458830|gb|EDX47669.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194711493|gb|ACF90714.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|195634231|gb|EDX52583.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|197093510|emb|CAR58971.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|197215372|gb|ACH52769.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197241789|gb|EDY24409.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|197288043|gb|EDY27430.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|197939011|gb|ACH76344.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|199602988|gb|EDZ01534.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|204320137|gb|EDZ05342.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|205322628|gb|EDZ10467.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|205328382|gb|EDZ15146.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205331874|gb|EDZ18638.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|205336377|gb|EDZ23141.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|205340674|gb|EDZ27438.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|206708310|emb|CAR32613.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|261247146|emb|CBG24969.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. D23580]
gi|267993969|gb|ACY88854.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|301158494|emb|CBW18004.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|312912970|dbj|BAJ36944.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|321224625|gb|EFX49688.1| Flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|322616973|gb|EFY13881.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|322618212|gb|EFY15104.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|322625883|gb|EFY22702.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|322626335|gb|EFY23145.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|322632750|gb|EFY29495.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|322639092|gb|EFY35785.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|322640408|gb|EFY37064.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322647231|gb|EFY43730.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|322649921|gb|EFY46342.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|322655529|gb|EFY51837.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|322662988|gb|EFY59195.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|322668173|gb|EFY64332.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|322674068|gb|EFY70162.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|322675580|gb|EFY71654.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|322683009|gb|EFY79025.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|322686703|gb|EFY82681.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|322715031|gb|EFZ06602.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Choleraesuis str. A50]
gi|323130259|gb|ADX17689.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. 4/74]
gi|323198063|gb|EFZ83180.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|323204465|gb|EFZ89471.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|323207555|gb|EFZ92503.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|323211006|gb|EFZ95866.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|323220727|gb|EGA05171.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|323226686|gb|EGA10883.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|323231562|gb|EGA15675.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|323236005|gb|EGA20084.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|323240575|gb|EGA24618.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|323245467|gb|EGA29467.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|323247585|gb|EGA31536.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323255520|gb|EGA39281.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|323262118|gb|EGA45681.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|323266241|gb|EGA49731.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|323270650|gb|EGA54091.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
gi|326622854|gb|EGE29199.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Dublin str. 3246]
gi|332988869|gb|AEF07852.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
Length = 89
Score = 57.2 bits (137), Expect = 7e-07, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 54/85 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + AM L+ +AP+L A+ G++I+ LQA TQI E+TL+F+PKI+AVFI
Sbjct: 1 MTPESVMMMGTEAMKVALALAAPLLLVALITGLIISILQAATQINEMTLSFIPKIVAVFI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
+I++ P++ + +V + S +
Sbjct: 61 AIIVAGPWMLNLLLDYVRTLFSNLP 85
>gi|238764401|ref|ZP_04625351.1| Flagellar biosynthetic protein FliQ [Yersinia kristensenii ATCC
33638]
gi|238697427|gb|EEP90194.1| Flagellar biosynthetic protein FliQ [Yersinia kristensenii ATCC
33638]
Length = 89
Score = 57.2 bits (137), Expect = 8e-07, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 57/88 (64%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + AM L+ +AP+L +A+ G++++ LQA TQI E+TL+F+PKI+AVF
Sbjct: 1 MTPESVMALGVEAMKIALALAAPLLLAALISGLIVSLLQAATQINEMTLSFIPKILAVFA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
TL+I+ P++ I ++ + + + + +
Sbjct: 61 TLVIAGPWMLSLILDYMRNLFTSLPTLI 88
>gi|83720940|ref|YP_440591.1| flagellar biosynthesis protein FliQ [Burkholderia thailandensis
E264]
gi|167579278|ref|ZP_02372152.1| flagellar biosynthesis protein FliQ [Burkholderia thailandensis
TXDOH]
gi|167617384|ref|ZP_02386015.1| flagellar biosynthesis protein FliQ [Burkholderia thailandensis
Bt4]
gi|83654765|gb|ABC38828.1| flagellar biosynthetic protein FliQ [Burkholderia thailandensis
E264]
Length = 90
Score = 57.2 bits (137), Expect = 8e-07, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 56/86 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +V+ +A AM+ L +AP+L A+ +G++++ QA TQI E TL+F+PK++AV
Sbjct: 1 MTPENVMTLAHQAMYIGLLLAAPLLLVALAVGLVVSLFQAATQINEATLSFIPKLLAVAA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
T++I+ P++ + ++ +L R+ +
Sbjct: 61 TMVIAGPWMLSTMLDYLREILLRVAT 86
>gi|168334562|ref|ZP_02692718.1| flagellar biosynthetic protein FliQ [Epulopiscium sp. 'N.t.
morphotype B']
Length = 88
Score = 57.2 bits (137), Expect = 8e-07, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 54/86 (62%)
Query: 3 EADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITL 62
E ++++ R + ++ ++P+L A+ +G++++ Q +T IQE TL F+PKI+AVF +
Sbjct: 2 EGQIIDVMRETIMLLIKVASPILLVALSVGLIVSIFQTVTSIQEQTLAFIPKILAVFAAI 61
Query: 63 IISAPFIGGQISSFVTLVLSRIQSSL 88
I P++ +S FVT ++S+ +
Sbjct: 62 IFFGPWMLTMLSQFVTDIISKFSDFI 87
>gi|170737011|ref|YP_001778271.1| flagellar biosynthetic protein FliQ [Burkholderia cenocepacia
MC0-3]
gi|169819199|gb|ACA93781.1| flagellar biosynthetic protein FliQ [Burkholderia cenocepacia
MC0-3]
Length = 90
Score = 57.2 bits (137), Expect = 8e-07, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 43/83 (51%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
+ A A+ +L ++ + G+L+A QA TQI E T++F+P++I +
Sbjct: 2 LTPDLAAGFAVDALRLVLVIILVLITPGLITGVLVAIFQAATQINEQTMSFLPRLITTLV 61
Query: 61 TLIISAPFIGGQISSFVTLVLSR 83
L ++ P++ G++ + + SR
Sbjct: 62 ALALAGPWMTGRVMHYTVEIFSR 84
>gi|304438441|ref|ZP_07398381.1| flagellar biosynthetic protein FliQ [Selenomonas sp. oral taxon
149 str. 67H29BP]
gi|304368524|gb|EFM22209.1| flagellar biosynthetic protein FliQ [Selenomonas sp. oral taxon
149 str. 67H29BP]
Length = 89
Score = 57.2 bits (137), Expect = 8e-07, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 55/88 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ V+++A+ A+ +L SAP+L + +G+L+A QA T IQE TL F+PKIIAVF+
Sbjct: 1 MSGDLVIQLAQEALMIVLLVSAPMLGLGLIVGLLVAVFQATTSIQEQTLAFIPKIIAVFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
++I P++ + +V+ V + L
Sbjct: 61 AILIFGPWMLRIMVEYVSNVFINLPMYL 88
>gi|51103000|gb|AAT96147.1| HrcS [Pseudomonas viridiflava]
gi|51103055|gb|AAT96201.1| HrcS [Pseudomonas viridiflava]
gi|330957487|gb|EGH57747.1| type III secretion component protein HrcS [Pseudomonas syringae
pv. maculicola str. ES4326]
Length = 88
Score = 57.2 bits (137), Expect = 8e-07, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 49/83 (59%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
+ L + + M+ ++ +AP L A+ +G++ + LQAL QIQ+ TL F K+ AV +TL +
Sbjct: 2 EALALFKQGMFLVVILTAPPLAVAVLVGVITSLLQALMQIQDQTLPFGIKLGAVGLTLAM 61
Query: 65 SAPFIGGQISSFVTLVLSRIQSS 87
+ +IG ++ F+ + I S
Sbjct: 62 TGRWIGVELIQFINMAFDLIARS 84
>gi|83646793|ref|YP_435228.1| flagellar biosynthetic protein FliQ [Hahella chejuensis KCTC
2396]
gi|83634836|gb|ABC30803.1| flagellar biosynthetic protein FliQ [Hahella chejuensis KCTC
2396]
Length = 88
Score = 57.2 bits (137), Expect = 8e-07, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 51/88 (57%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN + + +WT + +AP+L ++ +G++I+ LQ +TQIQE+TLTFVPKI AV
Sbjct: 1 MNADLAMMLTEDMLWTAVLVAAPILIVSLVVGLIISILQVVTQIQEMTLTFVPKIGAVVA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+ + ++ ++ + V+ I +
Sbjct: 61 IIFVMGSWMLATLTLYAKNVIGNIPAYF 88
>gi|254519407|ref|ZP_05131463.1| flagellar biosynthetic protein FliQ [Clostridium sp. 7_2_43FAA]
gi|226913156|gb|EEH98357.1| flagellar biosynthetic protein FliQ [Clostridium sp. 7_2_43FAA]
Length = 89
Score = 57.2 bits (137), Expect = 8e-07, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 51/84 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E ++ I R A++T L + P+L ++ +G++I+ QA TQIQE TLTFVPK+I +
Sbjct: 1 MSENLIIGIVRDALYTSLKVAGPILIVSILIGLIISIFQATTQIQEQTLTFVPKLIGIAA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
++ + F+ + SF + I
Sbjct: 61 VGLMLSSFMLHTLVSFTERIFELI 84
>gi|120598261|ref|YP_962835.1| flagellar biosynthetic protein FliQ [Shewanella sp. W3-18-1]
gi|146293661|ref|YP_001184085.1| flagellar biosynthetic protein FliQ [Shewanella putrefaciens
CN-32]
gi|120558354|gb|ABM24281.1| flagellar biosynthetic protein FliQ [Shewanella sp. W3-18-1]
gi|145565351|gb|ABP76286.1| flagellar biosynthetic protein FliQ [Shewanella putrefaciens
CN-32]
gi|319427060|gb|ADV55134.1| flagellar biosynthetic protein FliQ [Shewanella putrefaciens 200]
Length = 89
Score = 57.2 bits (137), Expect = 8e-07, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 45/85 (52%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +++I R A+ I+ + ++ + +G+++A QA T I E TL+F+P+++
Sbjct: 1 MTPEALIDIFREALAVIVMMVSAIVLPGLGIGLVVAVFQAATSINEQTLSFLPRLLVTLF 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
L+ ++ + F +++RI
Sbjct: 61 GLMFMGHWLVQTLMDFFIEMVNRIP 85
>gi|116694513|ref|YP_728724.1| flagellar biosynthesis protein FliQ [Ralstonia eutropha H16]
gi|113529012|emb|CAJ95359.1| flagellar biosynthesis protein [Ralstonia eutropha H16]
Length = 89
Score = 56.8 bits (136), Expect = 9e-07, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 53/86 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ IA AM L +AP+L A+ G++++ QA TQI E+TL+F+PK+IA+F
Sbjct: 1 MTPETVMTIATQAMKMTLLLAAPLLLVALAAGLVVSLFQAATQINEMTLSFIPKLIALFA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
T++++ P++ + ++ V I +
Sbjct: 61 TMVLAGPWMINSMVDYMREVFQSIPA 86
>gi|323496544|ref|ZP_08101598.1| flagellar biosynthesis protein FliQ [Vibrio sinaloensis DSM
21326]
gi|323318388|gb|EGA71345.1| flagellar biosynthesis protein FliQ [Vibrio sinaloensis DSM
21326]
Length = 89
Score = 56.8 bits (136), Expect = 9e-07, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 48/88 (54%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +E+ R A+W +L ++ ++ +G+++A QA T I E TL+F+P++I +
Sbjct: 1 MTPEIFVELFRDALWMVLIMVCAIIIPSLLIGLVVAIFQAATSINEQTLSFLPRLIVTLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L++ A ++ + F ++ R+ L
Sbjct: 61 ALMLFAHWMTQMMMEFFFNLIERLPQVL 88
>gi|86146125|ref|ZP_01064451.1| flagellar biosynthesis protein [Vibrio sp. MED222]
gi|218708834|ref|YP_002416455.1| flagellar biosynthesis protein FliQ [Vibrio splendidus LGP32]
gi|85836072|gb|EAQ54204.1| flagellar biosynthesis protein [Vibrio sp. MED222]
gi|218321853|emb|CAV17830.1| Flagellar biosynthetic protein fliQ [Vibrio splendidus LGP32]
Length = 89
Score = 56.8 bits (136), Expect = 9e-07, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 49/88 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN +++ + A+W +L ++ ++ +G+++A QA T I E TL+F+P++I +
Sbjct: 1 MNPEIFVDLFQDALWMVLIMVCAIIIPSLLIGLVVAVFQAATSINEQTLSFLPRLIVTLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L++ A ++ + F ++ R+ L
Sbjct: 61 ALMMFAHWMTQMMMEFFFELIERLPQVL 88
>gi|148240968|ref|YP_001220469.1| flagellar biosynthetic protein fliQ [Bradyrhizobium sp. BTAi1]
gi|146411344|gb|ABQ39797.1| Flagellar biosynthetic protein fliQ [Bradyrhizobium sp. BTAi1]
Length = 89
Score = 56.8 bits (136), Expect = 9e-07, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 52/86 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN+ +V+ A A+ T++ SAP+L +G+ ++ QALTQIQE TL PKI A F+
Sbjct: 1 MNDLEVMSAAHDAVMTVVVISAPLLIVGTVVGVAVSLFQALTQIQEQTLIQAPKIFATFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
T +I+ PF+ + ++++I +
Sbjct: 61 TFLIALPFMAETSHNQFLRMVAQISA 86
>gi|238788323|ref|ZP_04632117.1| Flagellar biosynthetic protein FliQ [Yersinia frederiksenii ATCC
33641]
gi|238723569|gb|EEQ15215.1| Flagellar biosynthetic protein FliQ [Yersinia frederiksenii ATCC
33641]
Length = 89
Score = 56.8 bits (136), Expect = 9e-07, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 56/88 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + AM L+ +AP+L +A+ G+ ++ LQA TQI E+TL+F+PKI++VF
Sbjct: 1 MTPESVMALGVEAMKIALALAAPLLLAALISGLTVSLLQAATQINEMTLSFIPKILSVFA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
T++I+ P++ I ++ + + + + +
Sbjct: 61 TMVIAGPWMLNLILDYMRNLFASLPTLI 88
>gi|157736466|ref|YP_001489149.1| flagellar basal body protein FliQ [Arcobacter butzleri RM4018]
gi|315635626|ref|ZP_07890889.1| flagellar biosynthetic protein FliQ [Arcobacter butzleri JV22]
gi|157698320|gb|ABV66480.1| flagellar basal body protein FliQ [Arcobacter butzleri RM4018]
gi|315479923|gb|EFU70593.1| flagellar biosynthetic protein FliQ [Arcobacter butzleri JV22]
Length = 86
Score = 56.8 bits (136), Expect = 9e-07, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 47/80 (58%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
D++ IA + IL P L +M +G++I+ A+TQ+ + +L+FVPK+I V ++I
Sbjct: 2 DLIGIAENTVKIILILGLPSLIVSMIIGLVISIFSAVTQVNDASLSFVPKMIFVSAFILI 61
Query: 65 SAPFIGGQISSFVTLVLSRI 84
S P++G + +F + I
Sbjct: 62 SLPWVGDHLETFTKDLWDII 81
>gi|87119472|ref|ZP_01075369.1| flagellar biosynthetic protein FliQ [Marinomonas sp. MED121]
gi|86164948|gb|EAQ66216.1| flagellar biosynthetic protein FliQ [Marinomonas sp. MED121]
Length = 97
Score = 56.8 bits (136), Expect = 9e-07, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 46/84 (54%)
Query: 2 NEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFIT 61
+ VL++ A I+ V+ ++ +G++++ QA TQI E TLTF+P++I +
Sbjct: 10 DPQVVLDLFGQAFLLIVIMVGAVMVPSLIVGLIVSVFQAATQINEQTLTFLPRLIVTILV 69
Query: 62 LIISAPFIGGQISSFVTLVLSRIQ 85
+I P++ ++ F T +L I
Sbjct: 70 IIYLGPWLLQKLVDFTTQLLIDIP 93
>gi|82795279|gb|ABB91648.1| type III secretion protein HrcS [Pseudomonas syringae pv.
tagetis]
Length = 88
Score = 56.8 bits (136), Expect = 9e-07, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 49/83 (59%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
+ L + + M+ ++ +AP L A+ +G++ + LQAL QIQ+ TL F K+ AV +TL +
Sbjct: 2 EALALFKQGMFLVVILTAPPLGVAVLVGVITSLLQALMQIQDQTLPFGIKLAAVGMTLAV 61
Query: 65 SAPFIGGQISSFVTLVLSRIQSS 87
+ +IG ++ F+ + I S
Sbjct: 62 TGRWIGVELIQFINMAFDLIARS 84
>gi|82702485|ref|YP_412051.1| flagellar biosynthesis protein FliQ [Nitrosospira multiformis
ATCC 25196]
gi|82410550|gb|ABB74659.1| flagellar biosynthetic protein FliQ [Nitrosospira multiformis
ATCC 25196]
Length = 89
Score = 56.8 bits (136), Expect = 9e-07, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 52/86 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + + AM L SAP+L +A+ G+L++ QA TQI E+TL+F+PK++ +F
Sbjct: 1 MTPESVMTLGQKAMEVTLMVSAPLLLAALATGLLVSIFQAATQINEMTLSFIPKLVVLFA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
L+++ P++ + ++ VL I
Sbjct: 61 MLVLAGPWMLSVLLDYMRQVLEGIPG 86
>gi|90423031|ref|YP_531401.1| flagellar biosynthesis protein FliQ [Rhodopseudomonas palustris
BisB18]
gi|90105045|gb|ABD87082.1| flagellar biosynthetic protein FliQ [Rhodopseudomonas palustris
BisB18]
Length = 87
Score = 56.8 bits (136), Expect = 9e-07, Method: Composition-based stats.
Identities = 38/87 (43%), Positives = 60/87 (68%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + L++AR A+WTI+ S+P++ + +G+ ++ +QALTQIQE TL FVPKIIA+F+
Sbjct: 1 MTGMETLDVARDAIWTIVIVSSPLMVVGLVVGVAVSLVQALTQIQEQTLVFVPKIIAIFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
TLI++ PF+ + S + + SRI
Sbjct: 61 TLILALPFMADAMHSHMMRISSRIMGG 87
>gi|171057714|ref|YP_001790063.1| flagellar biosynthetic protein FliQ [Leptothrix cholodnii SP-6]
gi|170775159|gb|ACB33298.1| flagellar biosynthetic protein FliQ [Leptothrix cholodnii SP-6]
Length = 89
Score = 56.8 bits (136), Expect = 9e-07, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 50/88 (56%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ VL + + +L +AP+L + + +G+ ++ QA TQ+ E TL+FVPK++A
Sbjct: 1 MDATQVLTHGQEGLGILLMVAAPMLLTVLLVGLTVSIFQAATQLHESTLSFVPKMVAAVT 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+ I+ P++ + ++ VL I ++
Sbjct: 61 VMAIAGPWMLSTLVEYLQRVLQSIPGAV 88
>gi|188532665|ref|YP_001906462.1| HrcS protein (hrp cluster) [Erwinia tasmaniensis Et1/99]
gi|188027707|emb|CAO95560.1| HrcS protein (hrp cluster) [Erwinia tasmaniensis Et1/99]
Length = 86
Score = 56.8 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 48/81 (59%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
D+L + + AM ++ SAP L A+ +G+L++ LQA+ Q+Q+ TL F K++AV + L +
Sbjct: 2 DILNLFKQAMLLVVLLSAPPLLVAVIVGVLVSLLQAVMQLQDQTLPFAIKLVAVGVALAL 61
Query: 65 SAPFIGGQISSFVTLVLSRIQ 85
S +IG ++ + I
Sbjct: 62 SGRWIGVELIELAQQAFTMIP 82
>gi|59712448|ref|YP_205224.1| flagellar biosynthesis protein FliQ [Vibrio fischeri ES114]
gi|197336221|ref|YP_002156667.1| flagellar biosynthetic protein FliQ [Vibrio fischeri MJ11]
gi|59480549|gb|AAW86336.1| flagellar biosynthesis protein FliQ [Vibrio fischeri ES114]
gi|197317711|gb|ACH67158.1| flagellar biosynthetic protein FliQ [Vibrio fischeri MJ11]
Length = 89
Score = 56.8 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 49/88 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +++ R A++ +L ++ ++ +G+++A QA T I E TL+F+P++I +
Sbjct: 1 MTPEMAIDLFRGALYMVLIMVCAIIIPSLLIGLVVAVFQAATSINEQTLSFLPRLIVTLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L++ ++ + + +++R+ + L
Sbjct: 61 ALMLFGHWMTRMLMEYFYELIARMPTVL 88
>gi|53717670|ref|YP_106656.1| flagellar biosynthesis protein FliQ [Burkholderia pseudomallei
K96243]
gi|53724242|ref|YP_104209.1| flagellar biosynthesis protein FliQ [Burkholderia mallei ATCC
23344]
gi|67641567|ref|ZP_00440343.1| flagellar biosynthetic protein FliQ [Burkholderia mallei GB8
horse 4]
gi|76809084|ref|YP_331660.1| flagellar biosynthesis protein FliQ [Burkholderia pseudomallei
1710b]
gi|121600763|ref|YP_994547.1| flagellar biosynthesis protein FliQ [Burkholderia mallei SAVP1]
gi|124384525|ref|YP_001027837.1| flagellar biosynthesis protein FliQ [Burkholderia mallei NCTC
10229]
gi|126440833|ref|YP_001057088.1| flagellar biosynthesis protein FliQ [Burkholderia pseudomallei
668]
gi|126449410|ref|YP_001082215.1| flagellar biosynthesis protein FliQ [Burkholderia mallei NCTC
10247]
gi|126454577|ref|YP_001064318.1| flagellar biosynthesis protein FliQ [Burkholderia pseudomallei
1106a]
gi|134281561|ref|ZP_01768269.1| flagellar biosynthetic protein FliQ [Burkholderia pseudomallei
305]
gi|167001620|ref|ZP_02267414.1| flagellar biosynthetic protein FliQ [Burkholderia mallei PRL-20]
gi|167717398|ref|ZP_02400634.1| flagellar biosynthesis protein FliQ [Burkholderia pseudomallei
DM98]
gi|167736440|ref|ZP_02409214.1| flagellar biosynthesis protein FliQ [Burkholderia pseudomallei
14]
gi|167813516|ref|ZP_02445196.1| flagellar biosynthesis protein FliQ [Burkholderia pseudomallei
91]
gi|167822058|ref|ZP_02453529.1| flagellar biosynthesis protein FliQ [Burkholderia pseudomallei 9]
gi|167843671|ref|ZP_02469179.1| flagellar biosynthesis protein FliQ [Burkholderia pseudomallei
B7210]
gi|167892142|ref|ZP_02479544.1| flagellar biosynthesis protein FliQ [Burkholderia pseudomallei
7894]
gi|167900654|ref|ZP_02487859.1| flagellar biosynthesis protein FliQ [Burkholderia pseudomallei
NCTC 13177]
gi|167908874|ref|ZP_02495965.1| flagellar biosynthesis protein FliQ [Burkholderia pseudomallei
112]
gi|167916913|ref|ZP_02504004.1| flagellar biosynthesis protein FliQ [Burkholderia pseudomallei
BCC215]
gi|217424032|ref|ZP_03455532.1| flagellar biosynthetic protein FliQ [Burkholderia pseudomallei
576]
gi|226193193|ref|ZP_03788803.1| flagellar biosynthetic protein FliQ [Burkholderia pseudomallei
Pakistan 9]
gi|237814426|ref|YP_002898877.1| flagellar biosynthetic protein FliQ [Burkholderia pseudomallei
MSHR346]
gi|242317919|ref|ZP_04816935.1| flagellar biosynthetic protein FliQ [Burkholderia pseudomallei
1106b]
gi|254175228|ref|ZP_04881889.1| flagellar biosynthetic protein FliQ [Burkholderia mallei ATCC
10399]
gi|254184096|ref|ZP_04890687.1| flagellar biosynthetic protein FliQ [Burkholderia pseudomallei
1655]
gi|254186562|ref|ZP_04893079.1| flagellar biosynthetic protein FliQ [Burkholderia pseudomallei
Pasteur 52237]
gi|254194698|ref|ZP_04901129.1| flagellar biosynthetic protein FliQ [Burkholderia pseudomallei
S13]
gi|254201282|ref|ZP_04907646.1| flagellar biosynthetic protein FliQ [Burkholderia mallei FMH]
gi|254206624|ref|ZP_04912975.1| flagellar biosynthetic protein FliQ [Burkholderia mallei JHU]
gi|254259098|ref|ZP_04950152.1| flagellar biosynthetic protein FliQ [Burkholderia pseudomallei
1710a]
gi|254298636|ref|ZP_04966087.1| flagellar biosynthetic protein FliQ [Burkholderia pseudomallei
406e]
gi|254357357|ref|ZP_04973631.1| flagellar biosynthetic protein FliQ [Burkholderia mallei
2002721280]
gi|52208084|emb|CAH34014.1| flagellar biosynthetic protein [Burkholderia pseudomallei K96243]
gi|52427665|gb|AAU48258.1| flagellar biosynthetic protein FliQ [Burkholderia mallei ATCC
23344]
gi|76578537|gb|ABA48012.1| flagellar biosynthetic protein FliQ [Burkholderia pseudomallei
1710b]
gi|121229573|gb|ABM52091.1| flagellar biosynthetic protein FliQ [Burkholderia mallei SAVP1]
gi|124292545|gb|ABN01814.1| flagellar biosynthetic protein FliQ [Burkholderia mallei NCTC
10229]
gi|126220326|gb|ABN83832.1| flagellar biosynthetic protein FliQ [Burkholderia pseudomallei
668]
gi|126228219|gb|ABN91759.1| flagellar biosynthetic protein FliQ [Burkholderia pseudomallei
1106a]
gi|126242280|gb|ABO05373.1| flagellar biosynthetic protein FliQ [Burkholderia mallei NCTC
10247]
gi|134247228|gb|EBA47314.1| flagellar biosynthetic protein FliQ [Burkholderia pseudomallei
305]
gi|147747176|gb|EDK54252.1| flagellar biosynthetic protein FliQ [Burkholderia mallei FMH]
gi|147752166|gb|EDK59232.1| flagellar biosynthetic protein FliQ [Burkholderia mallei JHU]
gi|148026421|gb|EDK84506.1| flagellar biosynthetic protein FliQ [Burkholderia mallei
2002721280]
gi|157808619|gb|EDO85789.1| flagellar biosynthetic protein FliQ [Burkholderia pseudomallei
406e]
gi|157934247|gb|EDO89917.1| flagellar biosynthetic protein FliQ [Burkholderia pseudomallei
Pasteur 52237]
gi|160696273|gb|EDP86243.1| flagellar biosynthetic protein FliQ [Burkholderia mallei ATCC
10399]
gi|169651448|gb|EDS84141.1| flagellar biosynthetic protein FliQ [Burkholderia pseudomallei
S13]
gi|184214628|gb|EDU11671.1| flagellar biosynthetic protein FliQ [Burkholderia pseudomallei
1655]
gi|217393095|gb|EEC33117.1| flagellar biosynthetic protein FliQ [Burkholderia pseudomallei
576]
gi|225934793|gb|EEH30770.1| flagellar biosynthetic protein FliQ [Burkholderia pseudomallei
Pakistan 9]
gi|237505331|gb|ACQ97649.1| flagellar biosynthetic protein FliQ [Burkholderia pseudomallei
MSHR346]
gi|238522520|gb|EEP85964.1| flagellar biosynthetic protein FliQ [Burkholderia mallei GB8
horse 4]
gi|242141158|gb|EES27560.1| flagellar biosynthetic protein FliQ [Burkholderia pseudomallei
1106b]
gi|243062630|gb|EES44816.1| flagellar biosynthetic protein FliQ [Burkholderia mallei PRL-20]
gi|254217787|gb|EET07171.1| flagellar biosynthetic protein FliQ [Burkholderia pseudomallei
1710a]
Length = 90
Score = 56.8 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 55/86 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +V+ +A AM+ L +AP+L A+ +G++++ QA TQI E TL+F+PK++AV
Sbjct: 1 MTPENVMTLAHQAMYIGLLLAAPLLLVALAVGLVVSLFQAATQINEATLSFIPKLLAVAA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
T++I+ P++ + ++ L R+ +
Sbjct: 61 TMVIAGPWMLSTMIDYLRETLLRVAT 86
>gi|255264177|ref|ZP_05343519.1| flagellar biosynthetic protein FliQ [Thalassiobium sp. R2A62]
gi|255106512|gb|EET49186.1| flagellar biosynthetic protein FliQ [Thalassiobium sp. R2A62]
Length = 89
Score = 56.8 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 45/78 (57%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
+NE +I R +W + S P+L A+ G+++ QALT IQE+TLTFVPK+ A+
Sbjct: 2 LNEQVFFDILRQGLWIAVMMSLPILAVALATGLVVGLFQALTSIQEMTLTFVPKLGAILA 61
Query: 61 TLIISAPFIGGQISSFVT 78
++ F+ +SSF
Sbjct: 62 VFWVTMGFMTQTLSSFFK 79
>gi|32265937|ref|NP_859969.1| flagellar biosynthesis protein FliQ [Helicobacter hepaticus ATCC
51449]
gi|32261986|gb|AAP77035.1| flagellar basal body protein FliQ [Helicobacter hepaticus ATCC
51449]
Length = 88
Score = 56.8 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 51/84 (60%)
Query: 3 EADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITL 62
EA ++ +A L S P+L + + +G+LI+ QA TQI E+TLTFVPKI+AV +
Sbjct: 2 EAQLMALAIQTYKLTLILSLPMLLAGLIVGLLISIFQATTQINEMTLTFVPKILAVVAVI 61
Query: 63 IISAPFIGGQISSFVTLVLSRIQS 86
I + P++ I+ + ++ + I +
Sbjct: 62 IFTMPWMINMITDYTRMLFTMISN 85
>gi|268680854|ref|YP_003305285.1| flagellar biosynthetic protein FliQ [Sulfurospirillum deleyianum
DSM 6946]
gi|268618885|gb|ACZ13250.1| flagellar biosynthetic protein FliQ [Sulfurospirillum deleyianum
DSM 6946]
Length = 88
Score = 56.8 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 45/86 (52%)
Query: 3 EADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITL 62
EA ++ + L S P+L + M G+ I+ QA+TQI E TL+FVPKI+ +
Sbjct: 2 EAKLIGLGVETFKIALYLSLPMLLAGMIAGLAISIFQAVTQINESTLSFVPKILITIVVA 61
Query: 63 IISAPFIGGQISSFVTLVLSRIQSSL 88
I + P++ + F T + I S L
Sbjct: 62 IFTMPWMMNMMIEFTTRLFDMIPSFL 87
>gi|238758100|ref|ZP_04619280.1| Flagellar biosynthetic protein FliQ [Yersinia aldovae ATCC 35236]
gi|238794006|ref|ZP_04637624.1| Flagellar biosynthetic protein FliQ [Yersinia intermedia ATCC
29909]
gi|238703638|gb|EEP96175.1| Flagellar biosynthetic protein FliQ [Yersinia aldovae ATCC 35236]
gi|238726638|gb|EEQ18174.1| Flagellar biosynthetic protein FliQ [Yersinia intermedia ATCC
29909]
Length = 89
Score = 56.8 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 57/88 (64%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + AM L+ +AP+L +A+ G++++ LQA TQI E+TL+F+PKI+AVF
Sbjct: 1 MTPESVMALGVEAMKIALALAAPLLLAALISGLIVSLLQAATQINEMTLSFIPKILAVFT 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
T++I+ P++ I ++ + + + + +
Sbjct: 61 TMVIAGPWMLNLILDYMRNLFTSLPTLI 88
>gi|118474914|ref|YP_891408.1| flagellar biosynthesis protein FliQ [Campylobacter fetus subsp.
fetus 82-40]
gi|118414140|gb|ABK82560.1| flagellar biosynthetic protein FliQ [Campylobacter fetus subsp.
fetus 82-40]
Length = 88
Score = 56.8 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 49/86 (56%)
Query: 3 EADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITL 62
+ D++ + L S P+L + + G++I+ QA TQI E+TL+FVPKII V + +
Sbjct: 2 QGDLIGLGVETFKLALLISLPMLLAGLIAGLIISIFQATTQINEMTLSFVPKIILVVVII 61
Query: 63 IISAPFIGGQISSFVTLVLSRIQSSL 88
I P++ Q+ F +L+ I + +
Sbjct: 62 IFLMPWMMNQMIEFTARILNMIPTFI 87
>gi|126174199|ref|YP_001050348.1| HrpO family type III secretion protein [Shewanella baltica OS155]
gi|304408582|ref|ZP_07390203.1| type III secretion protein, HrpO family [Shewanella baltica
OS183]
gi|307305410|ref|ZP_07585158.1| type III secretion protein, HrpO family [Shewanella baltica
BA175]
gi|125997404|gb|ABN61479.1| type III secretion protein, HrpO family [Shewanella baltica
OS155]
gi|304352403|gb|EFM16800.1| type III secretion protein, HrpO family [Shewanella baltica
OS183]
gi|306911713|gb|EFN42138.1| type III secretion protein, HrpO family [Shewanella baltica
BA175]
Length = 89
Score = 56.8 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 53/84 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E ++ +W +L S PV+ A +G+L++ +QALTQIQ+ TL F+ K+IAV +
Sbjct: 1 MSETIIVHFTSELLWMVLLLSLPVVIVASVVGVLVSLIQALTQIQDQTLQFLIKLIAVCV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
TL++ ++G + ++ ++ +I
Sbjct: 61 TLVVCYHWMGSSLLNYASMAFDQI 84
>gi|16764770|ref|NP_460385.1| type III secretion system apparatus protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. LT2]
gi|56413609|ref|YP_150684.1| type III secretion protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|62180011|ref|YP_216428.1| secretion system apparatus SsaS [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|161614163|ref|YP_001588128.1| hypothetical protein SPAB_01905 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|197362533|ref|YP_002142170.1| type III secretion protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|207857074|ref|YP_002243725.1| type III secretion protein [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|224584069|ref|YP_002637867.1| type III secretion protein [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|238913177|ref|ZP_04657014.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
gi|3024663|sp|P74891|SSAS_SALTY RecName: Full=Secretion system apparatus protein SsaS
gi|1526986|emb|CAA68200.1| secretion system apparatus, SsaS [Salmonella enterica subsp.
enterica serovar Typhimurium]
gi|16419941|gb|AAL20344.1| secretion system apparatus [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|56127866|gb|AAV77372.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|62127644|gb|AAX65347.1| Secretion system apparatus SsaS [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|161363527|gb|ABX67295.1| hypothetical protein SPAB_01905 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|197094010|emb|CAR59506.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|206708877|emb|CAR33207.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|224468596|gb|ACN46426.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|261246626|emb|CBG24436.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. D23580]
gi|267993309|gb|ACY88194.1| type III secretion system apparatus protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. 14028S]
gi|301157955|emb|CBW17450.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|312912405|dbj|BAJ36379.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|322615096|gb|EFY12019.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|322619937|gb|EFY16810.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|322622249|gb|EFY19094.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|322627771|gb|EFY24561.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|322632884|gb|EFY29628.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|322636625|gb|EFY33328.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|322641182|gb|EFY37824.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322644883|gb|EFY41416.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|322650281|gb|EFY46695.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|322655854|gb|EFY52156.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|322660180|gb|EFY56419.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|322665254|gb|EFY61442.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|322669511|gb|EFY65659.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|322673437|gb|EFY69539.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|322677365|gb|EFY73429.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|322679972|gb|EFY76011.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|322687444|gb|EFY83416.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|322714478|gb|EFZ06049.1| type III secretion system apparatus protein [Salmonella enterica
subsp. enterica serovar Choleraesuis str. A50]
gi|323129692|gb|ADX17122.1| type III secretion system apparatus protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. 4/74]
gi|323194103|gb|EFZ79302.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|323198584|gb|EFZ83685.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|323202910|gb|EFZ87945.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|323208630|gb|EFZ93568.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|323211166|gb|EFZ96013.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|323217607|gb|EGA02322.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|323218956|gb|EGA03466.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|323223786|gb|EGA08090.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|323229409|gb|EGA13532.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|323232632|gb|EGA16728.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|323240330|gb|EGA24374.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|323242681|gb|EGA26702.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|323245892|gb|EGA29880.1| type III secretion system protein SsaS [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2009159199]
gi|323252456|gb|EGA36303.1| type III secretion system protein SsaS [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008282]
gi|323256475|gb|EGA40208.1| type III secretion system protein SsaS [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008283]
gi|323260038|gb|EGA43663.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|323267199|gb|EGA50684.1| type III secretion system protein SsaS [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008285]
gi|323271478|gb|EGA54899.1| type III secretion system protein SsaS [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008287]
gi|332988307|gb|AEF07290.1| type III secretion system apparatus protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. UK-1]
Length = 88
Score = 56.8 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 58/84 (69%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN++++ + +W +L +S PV+ A +G++++ +QALTQIQ+ TL F+ K++A+ I
Sbjct: 1 MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
TL++S P++ G + ++ ++ RI
Sbjct: 61 TLMVSYPWLSGILLNYTRQIMLRI 84
>gi|224438532|ref|ZP_03659452.1| flagellar biosynthesis protein FliQ [Helicobacter cinaedi CCUG
18818]
gi|313144959|ref|ZP_07807152.1| flagellar biosynthesis protein FliQ [Helicobacter cinaedi CCUG
18818]
gi|313129990|gb|EFR47607.1| flagellar biosynthesis protein FliQ [Helicobacter cinaedi CCUG
18818]
Length = 88
Score = 56.8 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 51/84 (60%)
Query: 3 EADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITL 62
EA ++ +A L S P+L + + +G+LI+ QA TQI E+TLTFVPKI+AV +
Sbjct: 2 EAQLMALAIQTYKLTLILSLPMLLAGLIVGLLISIFQATTQINEMTLTFVPKILAVVAVI 61
Query: 63 IISAPFIGGQISSFVTLVLSRIQS 86
I + P++ I+ + ++ + I S
Sbjct: 62 IFAMPWMINMITDYTRMLFTMISS 85
>gi|224531611|ref|ZP_03672243.1| flagellar biosynthetic protein FliQ [Borrelia valaisiana VS116]
gi|224511076|gb|EEF81482.1| flagellar biosynthetic protein FliQ [Borrelia valaisiana VS116]
Length = 87
Score = 56.8 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 57/86 (66%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +L + R ++ I+ SAP+L A+ +G+LI+ QA+T IQ+ TL+F+PKII + +
Sbjct: 1 MTAGHILYLIRISIENIIILSAPMLIIALIVGLLISIFQAITSIQDQTLSFIPKIIVILL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
T++I P+I ++ F ++ +++Q+
Sbjct: 61 TIVIFGPWILNKLIQFTYMIFNQLQN 86
>gi|238793339|ref|ZP_04636965.1| Secretion system apparatus protein ssaS [Yersinia intermedia ATCC
29909]
gi|238727308|gb|EEQ18836.1| Secretion system apparatus protein ssaS [Yersinia intermedia ATCC
29909]
Length = 89
Score = 56.8 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 54/86 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ A V+ +A +W +L S PV+ A +G++++ LQALTQIQ+ TL F+ K++AV
Sbjct: 1 MSNAIVVHLATQLLWIVLLLSMPVVVVASVVGLIVSLLQALTQIQDQTLQFLIKLLAVSA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
TL+I+ ++G + ++ +I S
Sbjct: 61 TLLITYHWMGATLLNYTQQTFLQITS 86
>gi|119469997|ref|ZP_01612802.1| flagellar biosynthesis [Alteromonadales bacterium TW-7]
gi|119446707|gb|EAW27980.1| flagellar biosynthesis [Alteromonadales bacterium TW-7]
Length = 89
Score = 56.8 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 44/85 (51%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M ++I A++ ++ + ++ + +G+++A QA T I E TL+F+P+++
Sbjct: 1 MEPEIFVDILSDALFLVIKLVSAIVVPGLIIGLVVAVFQAATSINEQTLSFLPRLLITIS 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
LI+ + ++ F T ++ I
Sbjct: 61 ALIVGGHWFTQELMDFFTRLVLLIP 85
>gi|292487015|ref|YP_003529885.1| type III secretion protein HrcS [Erwinia amylovora CFBP1430]
gi|292900600|ref|YP_003539969.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
gi|1181174|gb|AAB06006.1| HrcS [Erwinia amylovora]
gi|291200448|emb|CBJ47577.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
gi|291552432|emb|CBA19477.1| Type III secretion protein HrcS [Erwinia amylovora CFBP1430]
gi|312171084|emb|CBX79343.1| Type III secretion protein HrcS [Erwinia amylovora ATCC BAA-2158]
Length = 86
Score = 56.8 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 48/81 (59%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
D+L + + AM ++ SAP L A+ +G+L++ LQA+ Q+Q+ TL F K++AV I L +
Sbjct: 2 DILNLFKQAMLLVVLLSAPPLLVAVIVGVLVSLLQAVMQLQDQTLPFAIKLVAVGIALAL 61
Query: 65 SAPFIGGQISSFVTLVLSRIQ 85
S +IG ++ + I
Sbjct: 62 SGRWIGVELLELAQQAFTMIP 82
>gi|29840694|ref|NP_829800.1| type III secretion inner membrane protein SctS [Chlamydophila
caviae GPIC]
gi|29835044|gb|AAP05678.1| type III secretion inner membrane protein SctS [Chlamydophila
caviae GPIC]
Length = 94
Score = 56.8 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 44/80 (55%)
Query: 4 ADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLI 63
+ + E + ++ IL SAP + A +GI++A QA TQIQE T F K++ +F TL+
Sbjct: 10 SMLFEYSYQSLLLILIISAPPIILASIVGIMVAIFQAATQIQEQTFAFAIKLVVIFGTLM 69
Query: 64 ISAPFIGGQISSFVTLVLSR 83
IS ++ I F + +
Sbjct: 70 ISGGWLSSMIFRFASQIFQN 89
>gi|225569961|ref|ZP_03778986.1| hypothetical protein CLOHYLEM_06056 [Clostridium hylemonae DSM
15053]
gi|225161431|gb|EEG74050.1| hypothetical protein CLOHYLEM_06056 [Clostridium hylemonae DSM
15053]
Length = 87
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 44/87 (50%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M ++ ++ + P+L +M +GI+I+ LQA TQI E TLTFVPK+I + I
Sbjct: 1 MTTGEIGDLMYQMFILAVKLGGPILLISMIVGIVISILQAATQIHEQTLTFVPKLIVIGI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
L+I+ + + F + I
Sbjct: 61 ILVITGNSMLKMLQEFTQQIFRFIAEG 87
>gi|161503486|ref|YP_001570598.1| hypothetical protein SARI_01562 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160864833|gb|ABX21456.1| hypothetical protein SARI_01562 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 88
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 57/84 (67%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN++++ + +W +L +S PV+ A +G++++ +QALTQIQ+ TL F+ K++A+
Sbjct: 1 MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAT 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
TL++S P++ G + ++ ++ RI
Sbjct: 61 TLMVSYPWLSGILLNYTRQIMLRI 84
>gi|51587311|emb|CAE53688.1| putative HrcS [Pseudomonas fluorescens bv. III]
gi|321399618|emb|CBJ44629.1| putative type III secretion system protein HrcS [Pseudomonas sp.
MTE-48-102]
gi|321399622|emb|CBJ44632.1| putative type III secretion system protein HrcS [Pseudomonas sp.
MTE-48-104]
gi|321399642|emb|CBJ44647.1| putative type III secretion system protein HrcS [Pseudomonas sp.
MTR-25-521]
gi|321399666|emb|CBJ44665.1| putative type III secretion system protein HrcS [Pseudomonas sp.
MTR-J5-621]
gi|321399670|emb|CBJ44668.1| putative type III secretion system protein HrcS [Pseudomonas sp.
MTR-J5-622]
gi|321399674|emb|CBJ44671.1| putative type III secretion system protein HrcS [Pseudomonas sp.
MTR-J5-623]
Length = 84
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 49/82 (59%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
D L + + M ++ SAP L A+ +G+L + +QAL QIQ+ TL F K++AV +TL++
Sbjct: 2 DALTLFKEGMLLVVLLSAPPLIVAVIVGVLTSLVQALMQIQDQTLPFGIKLVAVGLTLLV 61
Query: 65 SAPFIGGQISSFVTLVLSRIQS 86
+ +IGG++ + + S
Sbjct: 62 TGRWIGGELLGLLRRAFEMMAS 83
>gi|332533115|ref|ZP_08408984.1| flagellar biosynthetic protein FliQ [Pseudoalteromonas
haloplanktis ANT/505]
gi|332037397|gb|EGI73851.1| flagellar biosynthetic protein FliQ [Pseudoalteromonas
haloplanktis ANT/505]
Length = 89
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 45/85 (52%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M ++I A++ ++ + ++ + +G+++A QA T I E TL+F+P+++
Sbjct: 1 MEPEIFVDILSDALFLVIKLVSAIVVPGLIIGLVVAVFQAATSINEQTLSFLPRLLITIS 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
LI+ ++ ++ F T ++ I
Sbjct: 61 ALIVGGHWLTQELMDFFTRLVLLIP 85
>gi|325295422|ref|YP_004281936.1| flagellar biosynthetic protein FliQ [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065870|gb|ADY73877.1| flagellar biosynthetic protein FliQ [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 89
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 42/82 (51%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + + + L PVL + +GI+I+ QA TQI E+TLTF+PKI+A +
Sbjct: 1 MTVDQVITLGQKMLEIALLVGMPVLLTTFLVGIIISIFQAATQIHEMTLTFIPKIVAALL 60
Query: 61 TLIISAPFIGGQISSFVTLVLS 82
L I ++ ++ +
Sbjct: 61 ALFIFGSWMLIKLIDYTKENFQ 82
>gi|255348944|ref|ZP_05380951.1| type III secretion system, membrane protein [Chlamydia
trachomatis 70]
gi|255503483|ref|ZP_05381873.1| type III secretion system, membrane protein [Chlamydia
trachomatis 70s]
Length = 94
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 43/80 (53%)
Query: 4 ADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLI 63
+ + E + A+ IL SAP + A +GI++A QA TQIQE T F K++ +F TL+
Sbjct: 10 SILFEYSYEALLLILIISAPPIILASVVGIMVAIFQAATQIQEQTFAFAIKLVVIFGTLM 69
Query: 64 ISAPFIGGQISSFVTLVLSR 83
I+ ++ I F +
Sbjct: 70 ITGGWLCSMILRFAAQIFRN 89
>gi|254506873|ref|ZP_05119012.1| flagellar biosynthetic protein FliQ [Vibrio parahaemolyticus 16]
gi|219550158|gb|EED27144.1| flagellar biosynthetic protein FliQ [Vibrio parahaemolyticus 16]
Length = 89
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 48/88 (54%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +E+ R A+W +L ++ ++ +G+++A QA T I E TL+F+P++I +
Sbjct: 1 MTPEIFVELFRDALWMVLIMVCAIIIPSLLIGLVVAIFQAATSINEQTLSFLPRLIVTLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L++ A ++ + F ++ R+ L
Sbjct: 61 ALMLFAHWMTQMMMEFFFGIIERLPQVL 88
>gi|220903657|ref|YP_002478969.1| flagellar biosynthetic protein FliQ [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
gi|219867956|gb|ACL48291.1| flagellar biosynthetic protein FliQ [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
Length = 89
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 56/88 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ V+ R A+ L + P+L + +G++++ +QA TQIQE+TLTF+PKI+ +F+
Sbjct: 1 MSPDFVIGFGRQAIELCLMMALPMLGVGLGVGVIVSVIQAATQIQEMTLTFIPKIVCMFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
TL+++ P++ ++ +F V I + +
Sbjct: 61 TLLLALPWLMERMITFTRDVFINIPNYV 88
>gi|315127308|ref|YP_004069311.1| flagellar biosynthesis [Pseudoalteromonas sp. SM9913]
gi|315015822|gb|ADT69160.1| flagellar biosynthesis [Pseudoalteromonas sp. SM9913]
Length = 89
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 18/85 (21%), Positives = 43/85 (50%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M ++I A++ ++ + ++ + +G+++A QA T I E TL+F+P+++
Sbjct: 1 MEPEVFVDILSGALFLVIKLVSAIVVPGLIIGLVVAVFQAATSINEQTLSFLPRLLITIS 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
LI+ + ++ F ++ I
Sbjct: 61 ALIVGGHWFTQELMDFFNRLVLLIP 85
>gi|225552410|ref|ZP_03773350.1| flagellar biosynthetic protein FliQ [Borrelia sp. SV1]
gi|225371408|gb|EEH00838.1| flagellar biosynthetic protein FliQ [Borrelia sp. SV1]
Length = 87
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 57/86 (66%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +L + R ++ I+ SAP+L A+ +G+LI+ QA+T IQ+ TL+F+PKII + +
Sbjct: 1 MTAGHILYLIRISIENIIILSAPMLIIALIVGLLISIFQAITSIQDQTLSFIPKIIVILL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
T++I P+I ++ F ++ S++Q+
Sbjct: 61 TIVIFGPWILNKLMRFTYIIFSQLQN 86
>gi|163738062|ref|ZP_02145478.1| flagellar biosynthetic protein FliQ [Phaeobacter gallaeciensis
BS107]
gi|163742542|ref|ZP_02149928.1| flagellar biosynthetic protein FliQ [Phaeobacter gallaeciensis
2.10]
gi|161384127|gb|EDQ08510.1| flagellar biosynthetic protein FliQ [Phaeobacter gallaeciensis
2.10]
gi|161388678|gb|EDQ13031.1| flagellar biosynthetic protein FliQ [Phaeobacter gallaeciensis
BS107]
Length = 90
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 45/78 (57%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E + R A+W + S P+L A+ +G+ I QALT +QE+TLTFVPK+ A+ +
Sbjct: 2 MSEGLFYDTLRQALWASVMMSTPILLVALVVGLAIGLFQALTSVQEMTLTFVPKLTAILV 61
Query: 61 TLIISAPFIGGQISSFVT 78
++ F+ + +F
Sbjct: 62 VFWMTMGFMTQTLVAFFD 79
>gi|169831897|ref|YP_001717879.1| flagellar biosynthetic protein FliQ [Candidatus Desulforudis
audaxviator MP104C]
gi|169638741|gb|ACA60247.1| flagellar biosynthetic protein FliQ [Candidatus Desulforudis
audaxviator MP104C]
Length = 87
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 56/84 (66%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M ++ +E+ + A+ +L +AP L ++ +G++I+ LQA TQIQ+ +TFVPKI+AVF+
Sbjct: 1 MTDSLAVELTQKALMMVLLLTAPPLLVSLVVGLVISILQAATQIQDQMITFVPKIVAVFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
+L++ AP+ ++ + + RI
Sbjct: 61 SLLLLAPWYVRILTGYTAELFGRI 84
>gi|238785488|ref|ZP_04629471.1| Flagellar biosynthetic protein FliQ [Yersinia bercovieri ATCC
43970]
gi|238713590|gb|EEQ05619.1| Flagellar biosynthetic protein FliQ [Yersinia bercovieri ATCC
43970]
Length = 89
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 57/88 (64%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + AM L+ +AP+L +A+ G++++ LQA TQI E+TL+F+PKI+AVF
Sbjct: 1 MTPESVMALGVEAMKVALALAAPLLLAALISGLIVSLLQAATQINEMTLSFIPKILAVFA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
T++I+ P++ I ++ + + + + +
Sbjct: 61 TMVIAGPWMLSLILDYMRNLFTSLPTLI 88
>gi|226944501|ref|YP_002799574.1| flagellar biosynthetic protein [Azotobacter vinelandii DJ]
gi|226719428|gb|ACO78599.1| flagellar biosynthetic protein [Azotobacter vinelandii DJ]
Length = 89
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 53/88 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+++A M L +AP+L +A+ +G+L++ QA TQI E+TL+F+PKI+AVF
Sbjct: 1 MTPEMVMDLAHQGMRVTLFLAAPLLLTALLVGLLVSLFQAATQINEMTLSFIPKILAVFA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L+++ P + I F + + + L
Sbjct: 61 VLVLAGPLMIQLIVDFTRELFANLPGML 88
>gi|326791525|ref|YP_004309346.1| flagellar biosynthetic protein FliQ [Clostridium lentocellum DSM
5427]
gi|326542289|gb|ADZ84148.1| flagellar biosynthetic protein FliQ [Clostridium lentocellum DSM
5427]
Length = 87
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 50/86 (58%)
Query: 3 EADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITL 62
E VL+ R A+ I+ S P+L + + +G++I+ Q T IQE TL F+PKIIAVF+ +
Sbjct: 2 EQIVLDYMREALMMIVKVSLPILLTGLVVGLIISIFQTATSIQEQTLAFIPKIIAVFLAI 61
Query: 63 IISAPFIGGQISSFVTLVLSRIQSSL 88
II +I +S + + + + L
Sbjct: 62 IIFGSWIINMLSVYTIRLFNSFNTLL 87
>gi|973295|gb|AAC43958.1| SpaQ [Salmonella enterica]
gi|975764|gb|AAC43853.1| SpaQ [Salmonella enterica]
Length = 86
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 40/78 (51%)
Query: 4 ADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLI 63
D++ A++ +L S A +G+L+ Q +TQ+QE TL F K++ V + L
Sbjct: 2 DDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLF 61
Query: 64 ISAPFIGGQISSFVTLVL 81
+ + + G + S+ V+
Sbjct: 62 LLSGWYGEVLLSYARQVI 79
>gi|16760491|ref|NP_456108.1| type III secretion protein [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
gi|29141749|ref|NP_805091.1| type III secretion protein [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|213162231|ref|ZP_03347941.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Typhi str. E00-7866]
gi|213416631|ref|ZP_03349775.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Typhi str. E01-6750]
gi|213426015|ref|ZP_03358765.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Typhi str. E02-1180]
gi|213581366|ref|ZP_03363192.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
gi|213613056|ref|ZP_03370882.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
gi|213647288|ref|ZP_03377341.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
gi|213854183|ref|ZP_03382715.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
gi|289805084|ref|ZP_06535713.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Typhi str. AG3]
gi|289827205|ref|ZP_06545928.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Typhi str. E98-3139]
gi|25303010|pir||AH0696 probable type III secretion protein ssaS [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16502787|emb|CAD01945.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Typhi]
gi|29137377|gb|AAO68940.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
Length = 88
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 58/84 (69%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN++++ + +W +L +S PV+ A +G++++ +QALTQIQ+ TL F+ K++A+ I
Sbjct: 1 MNDSELTQFITQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
TL++S P++ G + ++ ++ RI
Sbjct: 61 TLMVSYPWLSGILLNYTRQIMLRI 84
>gi|975756|gb|AAC43847.1| SpaQ [Salmonella enterica]
gi|975760|gb|AAC43850.1| SpaQ [Salmonella enterica]
Length = 86
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 40/78 (51%)
Query: 4 ADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLI 63
D++ A++ +L S A +G+L+ Q +TQ+QE TL F K++ V + L
Sbjct: 2 DDLVFAGNKALYLVLILSGWPTIVATVIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLF 61
Query: 64 ISAPFIGGQISSFVTLVL 81
+ + + G + S+ V+
Sbjct: 62 LLSGWYGEVLLSYGRQVI 79
>gi|219684704|ref|ZP_03539647.1| flagellar biosynthetic protein FliQ [Borrelia garinii PBr]
gi|219672066|gb|EED29120.1| flagellar biosynthetic protein FliQ [Borrelia garinii PBr]
Length = 87
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 58/86 (67%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ +L + R ++ I+ SAP+L A+ +G+LI+ QA+T IQ+ TL+F+PKII + +
Sbjct: 1 MSAGHILYLIRISIENIIILSAPMLIIALIVGLLISIFQAITSIQDQTLSFIPKIIVILL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
T++I P+I ++ F ++ +++Q+
Sbjct: 61 TIVIFGPWILNKLMQFTYMIFNQLQN 86
>gi|188592195|ref|YP_001796793.1| flagellar biosynthesis protein fliq [Cupriavidus taiwanensis LMG
19424]
gi|170938569|emb|CAP63556.1| FliQ: flagellar biosynthesis protein. fliQ/mopD/spaQ family
[Cupriavidus taiwanensis LMG 19424]
Length = 89
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 53/86 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ IA AM L +AP+L A+ G++++ QA TQI E+TL+F+PK+IA+F
Sbjct: 1 MTPETVMTIATQAMKMTLLLAAPLLLVALAAGLVVSLFQAATQINEMTLSFIPKLIALFA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
T++++ P++ + ++ V I +
Sbjct: 61 TMVLAGPWMINAMVDYMREVFQSIPA 86
>gi|319790412|ref|YP_004152045.1| flagellar biosynthetic protein FliQ [Thermovibrio ammonificans
HB-1]
gi|317114914|gb|ADU97404.1| flagellar biosynthetic protein FliQ [Thermovibrio ammonificans
HB-1]
Length = 89
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M ++ + R + L APVL F+GI I+ LQA TQI E+TLTF+PKI+A F+
Sbjct: 1 MTVEQIIFLGRQMLEVALLVGAPVLLITFFVGIAISVLQAATQIHEMTLTFIPKILAAFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLS 82
+ I ++ ++ +
Sbjct: 61 AIFIFGGWMFMKLVEYTKENFQ 82
>gi|283782108|ref|YP_003372863.1| export protein FliQ family 3 [Pirellula staleyi DSM 6068]
gi|283440561|gb|ADB19003.1| export protein FliQ family 3 [Pirellula staleyi DSM 6068]
Length = 91
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 52/88 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ D + + + AM T L AP+L M +G+LI QALTQ+Q+ T+ FVPK++A+
Sbjct: 1 MDPQDAVTLTQQAMMTALVLCAPLLLVGMLVGLLIGLAQALTQVQDQTVAFVPKLVAMVA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+++ P++ Q+ + T + + I +
Sbjct: 61 VMLLCLPWLIEQMMEYSTNLFTGIPQMI 88
>gi|57504669|ref|ZP_00370747.1| flagellar biosynthetic protein FliQ [Campylobacter coli RM2228]
gi|305432627|ref|ZP_07401788.1| flagellar biosynthetic protein FliQ [Campylobacter coli JV20]
gi|57019438|gb|EAL56133.1| flagellar biosynthetic protein FliQ [Campylobacter coli RM2228]
gi|304444338|gb|EFM36990.1| flagellar biosynthetic protein FliQ [Campylobacter coli JV20]
Length = 89
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 51/88 (57%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E+ ++ + L S P+L + + G++I+ QA TQI E+TL+FVPKII V I
Sbjct: 1 MDESTLVALGVQTFKITLLLSLPMLLAGLIAGLIISIFQATTQINEMTLSFVPKIILVVI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+I P++ + F +L++I + +
Sbjct: 61 VIIFLMPWMTTTMIDFTENILNQIPTFI 88
>gi|56695102|ref|YP_165449.1| flagellar biosynthetic protein FliQ [Ruegeria pomeroyi DSS-3]
gi|56676839|gb|AAV93505.1| flagellar biosynthetic protein FliQ [Ruegeria pomeroyi DSS-3]
Length = 90
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 46/81 (56%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E + R +W + +S P+L A+ G+ + QALT IQE+TLTFVPK+ A+ I
Sbjct: 2 MSEGLFYDTVRQGLWIAVITSVPILSVALIAGLAVGLFQALTSIQEMTLTFVPKLAAIVI 61
Query: 61 TLIISAPFIGGQISSFVTLVL 81
IS F+ + ++ T L
Sbjct: 62 VFWISMGFMTQTLVNYFTTTL 82
>gi|332294882|ref|YP_004436805.1| export protein FliQ family 3 [Thermodesulfobium narugense DSM
14796]
gi|332177985|gb|AEE13674.1| export protein FliQ family 3 [Thermodesulfobium narugense DSM
14796]
Length = 89
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 55/86 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M++ L+++R AM +L +APVL A+F+G+ + QA TQ+Q++T++FVPK++AV +
Sbjct: 1 MSQGLALDLSRNAMLVLLLITAPVLLVALFIGLFLGIFQAATQLQDITISFVPKLLAVIV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
+ + PF ++S++ + I
Sbjct: 61 VMFLLGPFTLNVLTSYIIRLYQSIPD 86
>gi|153003616|ref|YP_001377941.1| export protein FliQ [Anaeromyxobacter sp. Fw109-5]
gi|152027189|gb|ABS24957.1| export protein FliQ family 3 [Anaeromyxobacter sp. Fw109-5]
Length = 88
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/82 (37%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ A +L + R A+ +L SAP L +A+ +G++ LQA TQIQE T+ VP++ AV +
Sbjct: 1 MDPA-LLHVGREALLVVLVVSAPPLLAALAVGLVTGVLQAATQIQEPTVGVVPRLGAVLV 59
Query: 61 TLIISAPFIGGQISSFVTLVLS 82
L ++AP+IG +++ L
Sbjct: 60 ALAVAAPWIGARVAQLARTCLD 81
>gi|160875391|ref|YP_001554707.1| HrpO family type III secretion protein [Shewanella baltica OS195]
gi|160860913|gb|ABX49447.1| type III secretion protein, HrpO family [Shewanella baltica
OS195]
gi|315267591|gb|ADT94444.1| type III secretion protein, HrpO family [Shewanella baltica
OS678]
Length = 89
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 53/84 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E ++ +W +L S PV+ A +G+L++ +QALTQIQ+ TL F+ K+IAV +
Sbjct: 1 MSETIIVHFTSELLWMVLLLSLPVVIVASVVGVLVSLIQALTQIQDQTLQFLIKLIAVCV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
TL++ ++G + ++ ++ +I
Sbjct: 61 TLVVCYHWMGSSLLNYASMAFDQI 84
>gi|146305088|ref|YP_001185553.1| HrpO family type III secretion protein [Pseudomonas mendocina
ymp]
gi|145573289|gb|ABP82821.1| type III secretion protein, HrpO family [Pseudomonas mendocina
ymp]
Length = 87
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 47/83 (56%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
+ L + + M+ ++ +AP L A+ +G+ + +QAL Q+Q+ TL F K+ AV +TL +
Sbjct: 2 EALALFKQGMFLVVILTAPPLAVAVLVGVTTSLVQALMQMQDQTLPFGLKLAAVGLTLAM 61
Query: 65 SAPFIGGQISSFVTLVLSRIQSS 87
+ +IG ++ F + I S
Sbjct: 62 TGRWIGLELIQFTNMAFDLIARS 84
>gi|203287734|ref|YP_002222749.1| flagellar biosynthesis protein [Borrelia recurrentis A1]
gi|201084954|gb|ACH94528.1| flagellar biosynthesis protein [Borrelia recurrentis A1]
Length = 87
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 57/86 (66%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M ++ + + ++ I+ SAP+L +A+ +G+L++ QA+T IQ+ TL+F+PKII + +
Sbjct: 1 MTTGQIIYLIKISIENIIILSAPILITALIVGLLVSIFQAVTSIQDQTLSFIPKIIIILL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
L+I P+I +I F LV ++IQ+
Sbjct: 61 VLVIFGPWILKKIMQFTFLVFNQIQN 86
>gi|328948399|ref|YP_004365736.1| flagellar biosynthetic protein FliQ [Treponema succinifaciens DSM
2489]
gi|328448723|gb|AEB14439.1| flagellar biosynthetic protein FliQ [Treponema succinifaciens DSM
2489]
Length = 89
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 46/86 (53%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ + + R + + AP+L +A+ +G+++A QA T IQE TLTF+PK + +
Sbjct: 1 MSLNLINNLVRGGILQVFLMCAPILGAALLVGLIVAIFQATTSIQEQTLTFLPKFLTILF 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
+ + F+ ++ + +L I +
Sbjct: 61 VIALLGGFMFNSLAQYFRGILDLIPA 86
>gi|167584014|ref|ZP_02376402.1| type III secretion inner membrane protein SctS [Burkholderia
ubonensis Bu]
Length = 87
Score = 56.0 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 47/82 (57%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M D++ + M L S PV+ A G+ I+FLQA+T +QE ++++ K++AV +
Sbjct: 1 METDDLIRLTSQGMMLCLYISLPVVLVAAASGLAISFLQAITSLQEQSISYGVKLVAVTV 60
Query: 61 TLIISAPFIGGQISSFVTLVLS 82
T+ I+ P+ +I F +LS
Sbjct: 61 TVAIAGPWAAAEILHFAQQLLS 82
>gi|237751246|ref|ZP_04581726.1| flagellar biosynthesis protein FliQ [Helicobacter bilis ATCC
43879]
gi|229372612|gb|EEO23003.1| flagellar biosynthesis protein FliQ [Helicobacter bilis ATCC
43879]
Length = 88
Score = 56.0 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 49/84 (58%)
Query: 3 EADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITL 62
E ++ +A L S PVL A+ +G+LI+ QA TQI E+TL FVPKI+AV +
Sbjct: 2 EQQLMSLAIQTYKITLFLSLPVLLVALIMGLLISIFQATTQINEMTLAFVPKILAVVAMI 61
Query: 63 IISAPFIGGQISSFVTLVLSRIQS 86
I + P++ + F +V++ I +
Sbjct: 62 IFTMPWMLNMLMDFTKMVINMIPT 85
>gi|77359752|ref|YP_339327.1| flagellar biosynthesis [Pseudoalteromonas haloplanktis TAC125]
gi|76874663|emb|CAI85884.1| flagellar biosynthesis [Pseudoalteromonas haloplanktis TAC125]
Length = 89
Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 45/85 (52%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M ++I +A++ ++ + ++ + +G+++A QA T I E TL+F+P+++
Sbjct: 1 MEPEVFVDILSSALFLVIKLVSAIVVPGLIVGLVVAVFQAATSINEQTLSFLPRLLITIS 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
LI+ + ++ F T ++ I
Sbjct: 61 ALIVGGHWFTQELMDFFTRLVLLIP 85
>gi|222823196|ref|YP_002574769.1| flagellar biosynthesis protein FliQ [Campylobacter lari RM2100]
gi|222538417|gb|ACM63518.1| flagellar biosynthesis protein FliQ [Campylobacter lari RM2100]
Length = 88
Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 50/86 (58%)
Query: 3 EADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITL 62
E+ ++ + L S P+L + + G++I+ QA+TQI E TL+FVPKI+ V + +
Sbjct: 2 ESTLVALGVQTFKITLMLSLPMLLAGLIAGLIISIFQAVTQINEATLSFVPKILLVVVVI 61
Query: 63 IISAPFIGGQISSFVTLVLSRIQSSL 88
+ P++ + F T +L++I S +
Sbjct: 62 VFLMPWMISSMIDFTTNILNQIPSFI 87
>gi|205352326|ref|YP_002226127.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|205272107|emb|CAR36960.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|326627376|gb|EGE33719.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9]
Length = 89
Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 53/85 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + AM L+ +AP+L A+ G++I+ LQA TQI E+TL+F+PKI+ VFI
Sbjct: 1 MTPESVMMMGTEAMKVALALAAPLLLVALITGLIISILQAATQINEMTLSFIPKIVTVFI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
+I++ P++ + +V + S +
Sbjct: 61 AIIVAGPWMLNLLLDYVRTLFSNLP 85
>gi|78778199|ref|YP_394514.1| flagellar biosynthesis protein FliQ [Sulfurimonas denitrificans
DSM 1251]
gi|78498739|gb|ABB45279.1| Flagellar biosynthesis protein FliQ [Sulfurimonas denitrificans
DSM 1251]
Length = 88
Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 49/86 (56%)
Query: 3 EADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITL 62
EA ++ + L + P L MF+G+ ++ QA TQI E+TL+F+PKI+ V I +
Sbjct: 2 EAKLITLGIDTFKVALMLALPGLLVGMFIGLAVSIFQATTQINEMTLSFIPKIVGVAIVI 61
Query: 63 IISAPFIGGQISSFVTLVLSRIQSSL 88
I++ P++ + F T V + + + +
Sbjct: 62 ILTMPWMLNVMIDFTTEVFNMMPTFV 87
>gi|16761666|ref|NP_457283.1| virulence associated secretory protein [Salmonella enterica
subsp. enterica serovar Typhi str. CT18]
gi|16766195|ref|NP_461810.1| needle complex export protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|29143150|ref|NP_806492.1| virulence-associated secretory protein [Salmonella enterica
subsp. enterica serovar Typhi str. Ty2]
gi|56414841|ref|YP_151916.1| virulence secretory protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|62181391|ref|YP_217808.1| surface presentation of antigens; secretory proteins [Salmonella
enterica subsp. enterica serovar Choleraesuis str.
SC-B67]
gi|161502067|ref|YP_001569179.1| hypothetical protein SARI_00084 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|161615801|ref|YP_001589766.1| hypothetical protein SPAB_03592 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|167550262|ref|ZP_02344019.1| EpaQ [Salmonella enterica subsp. enterica serovar Saintpaul str.
SARA29]
gi|167993124|ref|ZP_02574219.1| EpaQ [Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
str. CVM23701]
gi|168230959|ref|ZP_02656017.1| EpaQ [Salmonella enterica subsp. enterica serovar Kentucky str.
CDC 191]
gi|168235929|ref|ZP_02660987.1| EpaQ [Salmonella enterica subsp. enterica serovar Schwarzengrund
str. SL480]
gi|168242626|ref|ZP_02667558.1| EpaQ [Salmonella enterica subsp. enterica serovar Heidelberg str.
SL486]
gi|168261988|ref|ZP_02683961.1| EpaQ [Salmonella enterica subsp. enterica serovar Hadar str.
RI_05P066]
gi|168463976|ref|ZP_02697893.1| EpaQ [Salmonella enterica subsp. enterica serovar Newport str.
SL317]
gi|168820414|ref|ZP_02832414.1| EpaQ [Salmonella enterica subsp. enterica serovar Weltevreden
str. HI_N05-537]
gi|194446370|ref|YP_002042130.1| hypothetical protein SNSL254_A3094 [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194450387|ref|YP_002046849.1| secretory protein EpaQ [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|194472452|ref|ZP_03078436.1| EpaQ [Salmonella enterica subsp. enterica serovar Kentucky str.
CVM29188]
gi|194737177|ref|YP_002115841.1| EpaQ [Salmonella enterica subsp. enterica serovar Schwarzengrund
str. CVM19633]
gi|197248839|ref|YP_002147786.1| EpaQ [Salmonella enterica subsp. enterica serovar Agona str.
SL483]
gi|197262746|ref|ZP_03162820.1| EpaQ [Salmonella enterica subsp. enterica serovar Saintpaul str.
SARA23]
gi|197363769|ref|YP_002143406.1| virulence secretory protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|198245541|ref|YP_002216858.1| hypothetical protein SeD_A3199 [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|200388441|ref|ZP_03215053.1| EpaQ [Salmonella enterica subsp. enterica serovar Virchow str.
SL491]
gi|204928101|ref|ZP_03219301.1| EpaQ [Salmonella enterica subsp. enterica serovar Javiana str.
GA_MM04042433]
gi|205353832|ref|YP_002227633.1| virulence associated secretory protein [Salmonella enterica
subsp. enterica serovar Gallinarum str. 287/91]
gi|207858151|ref|YP_002244802.1| secretory protein [Salmonella enterica subsp. enterica serovar
Enteritidis str. P125109]
gi|213052433|ref|ZP_03345311.1| secretory protein (associated with virulence) [Salmonella
enterica subsp. enterica serovar Typhi str. E00-7866]
gi|213419214|ref|ZP_03352280.1| secretory protein (associated with virulence) [Salmonella
enterica subsp. enterica serovar Typhi str. E01-6750]
gi|213425709|ref|ZP_03358459.1| secretory protein (associated with virulence) [Salmonella
enterica subsp. enterica serovar Typhi str. E02-1180]
gi|213609305|ref|ZP_03369131.1| secretory protein (associated with virulence) [Salmonella
enterica subsp. enterica serovar Typhi str. E98-2068]
gi|213649911|ref|ZP_03379964.1| secretory protein (associated with virulence) [Salmonella
enterica subsp. enterica serovar Typhi str. J185]
gi|213853011|ref|ZP_03382543.1| secretory protein (associated with virulence) [Salmonella
enterica subsp. enterica serovar Typhi str. M223]
gi|224584667|ref|YP_002638465.1| secretory protein (associated with virulence) [Salmonella
enterica subsp. enterica serovar Paratyphi C strain
RKS4594]
gi|238909656|ref|ZP_04653493.1| secretory protein (associated with virulence) [Salmonella
enterica subsp. enterica serovar Tennessee str.
CDC07-0191]
gi|289829391|ref|ZP_06547003.1| EpaQ [Salmonella enterica subsp. enterica serovar Typhi str.
E98-3139]
gi|61246000|sp|P0A1L7|SPAQ_SALTY RecName: Full=Surface presentation of antigens protein SpaQ
gi|61246006|sp|P0A1L8|SPAQ_SALTI RecName: Full=Surface presentation of antigens protein SpaQ
gi|61246011|sp|P0A1L9|SPAQ_SALDU RecName: Full=Surface presentation of antigens protein SpaQ
gi|61246015|sp|P0A1M0|SPAQ_SALEN RecName: Full=Surface presentation of antigens protein SpaQ
gi|61246017|sp|P0A1M1|SPAQ_SALGL RecName: Full=Surface presentation of antigens protein SpaQ
gi|61246020|sp|P0A1M2|SPAQ_SALSE RecName: Full=Surface presentation of antigens protein SpaQ
gi|61246024|sp|P0A1M3|SPAQ_SALTP RecName: Full=Surface presentation of antigens protein SpaQ
gi|973259|gb|AAC43937.1| SpaQ [Salmonella enterica subsp. enterica serovar Dublin]
gi|973263|gb|AAC43967.1| SpaQ [Salmonella enterica subsp. enterica serovar Senftenberg]
gi|973267|gb|AAC43964.1| SpaQ [Salmonella enterica subsp. enterica serovar Gallinarum]
gi|973271|gb|AAC43940.1| SpaQ [Salmonella enterica]
gi|973275|gb|AAC43943.1| SpaQ [Salmonella enterica]
gi|973279|gb|AAC43946.1| SpaQ [Salmonella enterica]
gi|973283|gb|AAC43949.1| SpaQ [Salmonella enterica]
gi|973287|gb|AAC43952.1| SpaQ [Salmonella enterica]
gi|973291|gb|AAC43955.1| SpaQ [Salmonella enterica]
gi|973299|gb|AAC43961.1| SpaQ [Salmonella enterica]
gi|975744|gb|AAC43838.1| SpaQ [Salmonella enterica]
gi|975748|gb|AAC43841.1| SpaQ [Salmonella enterica]
gi|975752|gb|AAC43844.1| SpaQ [Salmonella enterica]
gi|975768|gb|AAC43859.1| SpaQ [Salmonella enterica subsp. enterica serovar Typhisuis]
gi|975772|gb|AAC43862.1| SpaQ [Salmonella enterica subsp. enterica serovar Typhi]
gi|975776|gb|AAC43865.1| SpaQ [Salmonella enterica subsp. enterica serovar Typhimurium]
gi|975780|gb|AAC43856.1| SpaQ [Salmonella enterica subsp. enterica serovar Enteritidis]
gi|16421437|gb|AAL21769.1| surface presentation of antigens [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|16503967|emb|CAD05996.1| secretory protein (associated with virulence) [Salmonella
enterica subsp. enterica serovar Typhi]
gi|29138783|gb|AAO70352.1| virulence-associated secretory protein [Salmonella enterica
subsp. enterica serovar Typhi str. Ty2]
gi|56129098|gb|AAV78604.1| secretory protein (associated with virulence) [Salmonella
enterica subsp. enterica serovar Paratyphi A str. ATCC
9150]
gi|62129024|gb|AAX66727.1| surface presentation of antigens; secretory proteins [Salmonella
enterica subsp. enterica serovar Choleraesuis str.
SC-B67]
gi|160863414|gb|ABX20037.1| hypothetical protein SARI_00084 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
gi|161365165|gb|ABX68933.1| hypothetical protein SPAB_03592 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194405033|gb|ACF65255.1| EpaQ [Salmonella enterica subsp. enterica serovar Newport str.
SL254]
gi|194408691|gb|ACF68910.1| EpaQ [Salmonella enterica subsp. enterica serovar Heidelberg str.
SL476]
gi|194458816|gb|EDX47655.1| EpaQ [Salmonella enterica subsp. enterica serovar Kentucky str.
CVM29188]
gi|194712679|gb|ACF91900.1| EpaQ [Salmonella enterica subsp. enterica serovar Schwarzengrund
str. CVM19633]
gi|195633717|gb|EDX52131.1| EpaQ [Salmonella enterica subsp. enterica serovar Newport str.
SL317]
gi|197095246|emb|CAR60797.1| secretory protein (associated with virulence) [Salmonella
enterica subsp. enterica serovar Paratyphi A str.
AKU_12601]
gi|197212542|gb|ACH49939.1| EpaQ [Salmonella enterica subsp. enterica serovar Agona str.
SL483]
gi|197241001|gb|EDY23621.1| EpaQ [Salmonella enterica subsp. enterica serovar Saintpaul str.
SARA23]
gi|197290844|gb|EDY30198.1| EpaQ [Salmonella enterica subsp. enterica serovar Schwarzengrund
str. SL480]
gi|197940057|gb|ACH77390.1| EpaQ [Salmonella enterica subsp. enterica serovar Dublin str.
CT_02021853]
gi|199605539|gb|EDZ04084.1| EpaQ [Salmonella enterica subsp. enterica serovar Virchow str.
SL491]
gi|204322423|gb|EDZ07620.1| EpaQ [Salmonella enterica subsp. enterica serovar Javiana str.
GA_MM04042433]
gi|205273613|emb|CAR38600.1| secretory protein (associated with virulence) [Salmonella
enterica subsp. enterica serovar Gallinarum str.
287/91]
gi|205324828|gb|EDZ12667.1| EpaQ [Salmonella enterica subsp. enterica serovar Saintpaul str.
SARA29]
gi|205328717|gb|EDZ15481.1| EpaQ [Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
str. CVM23701]
gi|205334504|gb|EDZ21268.1| EpaQ [Salmonella enterica subsp. enterica serovar Kentucky str.
CDC 191]
gi|205338154|gb|EDZ24918.1| EpaQ [Salmonella enterica subsp. enterica serovar Heidelberg str.
SL486]
gi|205342990|gb|EDZ29754.1| EpaQ [Salmonella enterica subsp. enterica serovar Weltevreden
str. HI_N05-537]
gi|205349077|gb|EDZ35708.1| EpaQ [Salmonella enterica subsp. enterica serovar Hadar str.
RI_05P066]
gi|206709954|emb|CAR34308.1| secretory protein (associated with virulence) [Salmonella
enterica subsp. enterica serovar Enteritidis str.
P125109]
gi|218988949|gb|ACL13612.1| surface presentation of antigens protein SpaQ [Salmonella
enterica subsp. salamae serovar Sofia]
gi|224469194|gb|ACN47024.1| secretory protein (associated with virulence) [Salmonella
enterica subsp. enterica serovar Paratyphi C strain
RKS4594]
gi|261248025|emb|CBG25858.1| secretory protein (associated with virulence) [Salmonella
enterica subsp. enterica serovar Typhimurium str.
D23580]
gi|267995017|gb|ACY89902.1| needle complex export protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|301159448|emb|CBW18966.1| type III secretion system secretory apparatus [Salmonella
enterica subsp. enterica serovar Typhimurium str.
SL1344]
gi|312913907|dbj|BAJ37881.1| EpaQ [Salmonella enterica subsp. enterica serovar Typhimurium
str. T000240]
gi|320087294|emb|CBY97059.1| Surface presentation of antigens protein spaQ [Salmonella
enterica subsp. enterica serovar Weltevreden str.
2007-60-3289-1]
gi|321223438|gb|EFX48504.1| Surface presentation of antigens protein SpaQ [Salmonella
enterica subsp. enterica serovar Typhimurium str.
TN061786]
gi|322614293|gb|EFY11224.1| EpaQ [Salmonella enterica subsp. enterica serovar Montevideo str.
315996572]
gi|322621643|gb|EFY18496.1| EpaQ [Salmonella enterica subsp. enterica serovar Montevideo str.
495297-1]
gi|322624504|gb|EFY21337.1| EpaQ [Salmonella enterica subsp. enterica serovar Montevideo str.
495297-3]
gi|322628835|gb|EFY25618.1| EpaQ [Salmonella enterica subsp. enterica serovar Montevideo str.
495297-4]
gi|322633438|gb|EFY30180.1| EpaQ [Salmonella enterica subsp. enterica serovar Montevideo str.
515920-1]
gi|322635986|gb|EFY32694.1| EpaQ [Salmonella enterica subsp. enterica serovar Montevideo str.
515920-2]
gi|322639694|gb|EFY36379.1| EpaQ [Salmonella enterica subsp. enterica serovar Montevideo str.
531954]
gi|322646877|gb|EFY43380.1| EpaQ [Salmonella enterica subsp. enterica serovar Montevideo str.
NC_MB110209-0054]
gi|322650645|gb|EFY47050.1| EpaQ [Salmonella enterica subsp. enterica serovar Montevideo str.
OH_2009072675]
gi|322654742|gb|EFY51061.1| EpaQ [Salmonella enterica subsp. enterica serovar Montevideo str.
CASC_09SCPH15965]
gi|322658963|gb|EFY55216.1| EpaQ [Salmonella enterica subsp. enterica serovar Montevideo str.
19N]
gi|322664470|gb|EFY60664.1| EpaQ [Salmonella enterica subsp. enterica serovar Montevideo str.
81038-01]
gi|322668281|gb|EFY64438.1| EpaQ [Salmonella enterica subsp. enterica serovar Montevideo str.
MD_MDA09249507]
gi|322673739|gb|EFY69840.1| EpaQ [Salmonella enterica subsp. enterica serovar Montevideo str.
414877]
gi|322677800|gb|EFY73863.1| EpaQ [Salmonella enterica subsp. enterica serovar Montevideo str.
366867]
gi|322681370|gb|EFY77402.1| EpaQ [Salmonella enterica subsp. enterica serovar Montevideo str.
413180]
gi|322683772|gb|EFY79782.1| EpaQ [Salmonella enterica subsp. enterica serovar Montevideo str.
446600]
gi|322715875|gb|EFZ07446.1| needle complex export protein [Salmonella enterica subsp.
enterica serovar Choleraesuis str. A50]
gi|323131241|gb|ADX18671.1| Surface presentation of antigens protein SpaQ [Salmonella
enterica subsp. enterica serovar Typhimurium str. 4/74]
gi|323193839|gb|EFZ79042.1| EpaQ [Salmonella enterica subsp. enterica serovar Montevideo str.
609458-1]
gi|323200309|gb|EFZ85391.1| EpaQ [Salmonella enterica subsp. enterica serovar Montevideo str.
556150-1]
gi|323203188|gb|EFZ88217.1| EpaQ [Salmonella enterica subsp. enterica serovar Montevideo str.
609460]
gi|323205565|gb|EFZ90530.1| EpaQ [Salmonella enterica subsp. enterica serovar Montevideo str.
507440-20]
gi|323210076|gb|EFZ94979.1| EpaQ [Salmonella enterica subsp. enterica serovar Montevideo str.
556152]
gi|323216379|gb|EGA01106.1| EpaQ [Salmonella enterica subsp. enterica serovar Montevideo str.
MB101509-0077]
gi|323221126|gb|EGA05557.1| EpaQ [Salmonella enterica subsp. enterica serovar Montevideo str.
MB102109-0047]
gi|323226948|gb|EGA11130.1| EpaQ [Salmonella enterica subsp. enterica serovar Montevideo str.
MB110209-0055]
gi|323230768|gb|EGA14886.1| EpaQ [Salmonella enterica subsp. enterica serovar Montevideo str.
MB111609-0052]
gi|323234881|gb|EGA18967.1| EpaQ [Salmonella enterica subsp. enterica serovar Montevideo str.
2009083312]
gi|323238920|gb|EGA22970.1| EpaQ [Salmonella enterica subsp. enterica serovar Montevideo str.
2009085258]
gi|323241620|gb|EGA25651.1| EpaQ [Salmonella enterica subsp. enterica serovar Montevideo str.
315731156]
gi|323248233|gb|EGA32169.1| type III secretion system protein SpaQ [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2009159199]
gi|323251183|gb|EGA35056.1| type III secretion system protein SpaQ [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008282]
gi|323256067|gb|EGA39805.1| type III secretion system protein SpaQ [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008283]
gi|323263202|gb|EGA46740.1| EpaQ [Salmonella enterica subsp. enterica serovar Montevideo str.
IA_2010008284]
gi|323264295|gb|EGA47801.1| type III secretion system protein SpaQ [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008285]
gi|323271121|gb|EGA54549.1| type III secretion system protein SpaQ [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008287]
gi|326624620|gb|EGE30965.1| Surface presentation of antigens protein SpaQ [Salmonella
enterica subsp. enterica serovar Dublin str. 3246]
gi|326628941|gb|EGE35284.1| Surface presentation of antigens protein SpaQ [Salmonella
enterica subsp. enterica serovar Gallinarum str. 9]
gi|332989761|gb|AEF08744.1| needle complex export protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
Length = 86
Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 40/78 (51%)
Query: 4 ADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLI 63
D++ A++ +L S A +G+L+ Q +TQ+QE TL F K++ V + L
Sbjct: 2 DDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLF 61
Query: 64 ISAPFIGGQISSFVTLVL 81
+ + + G + S+ V+
Sbjct: 62 LLSGWYGEVLLSYGRQVI 79
>gi|332994110|gb|AEF04165.1| flagellar biosynthesis [Alteromonas sp. SN2]
Length = 89
Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 46/85 (54%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ +EI R AM+ ++ + V+ ++ +G+++A QA T I E T++F+P+++ +
Sbjct: 1 MSPEVFVEILREAMFMVIVLVSAVIVPSLIVGLVVAVFQAATSINEQTMSFLPRLLVTLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
L ++ ++ F ++ I
Sbjct: 61 ALSWGGNWLVQKLMDFTFHMVEMIP 85
>gi|239628945|ref|ZP_04671976.1| conserved hypothetical protein [Clostridiales bacterium
1_7_47_FAA]
gi|239519091|gb|EEQ58957.1| conserved hypothetical protein [Clostridiales bacterium
1_7_47FAA]
Length = 87
Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 50/86 (58%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN V+EI + AM + P+L ++ +G+L+A QA TQI E TLTFVPK++ + +
Sbjct: 1 MNAEQVMEIMKEAMLVAFELAGPLLIVSIAVGLLVAIFQAATQIHEQTLTFVPKLLVIAL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
L+ ++ ++ FV + + + +
Sbjct: 61 VLLALGSWMSKVMNEFVVELFAIMAA 86
>gi|160902841|ref|YP_001568422.1| flagellar biosynthetic protein FliQ [Petrotoga mobilis SJ95]
gi|160360485|gb|ABX32099.1| flagellar biosynthetic protein FliQ [Petrotoga mobilis SJ95]
Length = 88
Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 48/82 (58%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E ++EI + L +P+L ++ +G++I+ QA+TQ+ E TLTF PKII F+
Sbjct: 1 MSEEVLIEIFENGIMLFLKVVSPILIISVAVGLIISIFQAVTQLHEQTLTFAPKIIITFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLS 82
L++ +I +S F + +
Sbjct: 61 ALVLMFSWIMQNLSDFSFELFT 82
>gi|113969636|ref|YP_733429.1| flagellar biosynthetic protein FliQ [Shewanella sp. MR-4]
gi|114046866|ref|YP_737416.1| flagellar biosynthetic protein FliQ [Shewanella sp. MR-7]
gi|117919801|ref|YP_868993.1| flagellar biosynthetic protein FliQ [Shewanella sp. ANA-3]
gi|113884320|gb|ABI38372.1| flagellar biosynthetic protein FliQ [Shewanella sp. MR-4]
gi|113888308|gb|ABI42359.1| flagellar biosynthetic protein FliQ [Shewanella sp. MR-7]
gi|117612133|gb|ABK47587.1| flagellar biosynthetic protein FliQ [Shewanella sp. ANA-3]
Length = 89
Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 47/85 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +++I R A+ I+ + ++ + +G+++A QA T I E TL+F+P++I +
Sbjct: 1 MTPEALIDIFREALAVIVMMVSAIVLPGLGIGLIVAVFQAATSINEQTLSFLPRLIVTLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
L++ ++ + F +++RI
Sbjct: 61 ALMVMGHWLVQTLMDFFIEMVNRIP 85
>gi|239997095|ref|ZP_04717619.1| flagellar biosynthesis [Alteromonas macleodii ATCC 27126]
gi|332140593|ref|YP_004426331.1| flagellar biosynthesis [Alteromonas macleodii str. 'Deep
ecotype']
gi|327550615|gb|AEA97333.1| flagellar biosynthesis [Alteromonas macleodii str. 'Deep
ecotype']
Length = 89
Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 46/85 (54%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ +EI R AM+ ++ + V+ ++ +G+++A QA T I E T++F+P+++ +
Sbjct: 1 MSPEVFVEILREAMFMVIVLVSAVIVPSLIVGLVVAVFQAATSINEQTMSFLPRLLVTLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
L ++ Q+ F ++ I
Sbjct: 61 ALSWGGNWLVQQLMDFTFRMVDMIP 85
>gi|254466972|ref|ZP_05080383.1| export protein FliQ, family 3 [Rhodobacterales bacterium Y4I]
gi|206687880|gb|EDZ48362.1| export protein FliQ, family 3 [Rhodobacterales bacterium Y4I]
Length = 90
Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 47/78 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E+ + R A+W ++ S P+L A+ +G+ I QALT +QE+TLTFVPK+ A+ +
Sbjct: 2 MSESLFYDTLRQALWAAVTMSTPILVVALVVGLTIGLFQALTSVQEMTLTFVPKLTAILV 61
Query: 61 TLIISAPFIGGQISSFVT 78
++ F+ + +F
Sbjct: 62 VFWMTMGFMTQTLVAFFD 79
>gi|203284195|ref|YP_002221935.1| flagellar biosynthesis protein [Borrelia duttonii Ly]
gi|201083638|gb|ACH93229.1| flagellar biosynthesis protein [Borrelia duttonii Ly]
Length = 87
Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 57/86 (66%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M ++ + + ++ I+ SAP+L +A+ +G+L++ QA+T IQ+ TL+F+PKII + +
Sbjct: 1 MTTGQIIYLIKISIENIIILSAPMLITALIVGLLVSIFQAVTSIQDQTLSFIPKIIIILL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
L+I P+I ++ F LV ++IQ+
Sbjct: 61 VLVIFGPWILKKLMQFTFLVFNQIQN 86
>gi|15605292|ref|NP_220078.1| Yop proteins translocation protein S [Chlamydia trachomatis
D/UW-3/CX]
gi|76789300|ref|YP_328386.1| SctS [Chlamydia trachomatis A/HAR-13]
gi|166154778|ref|YP_001654896.1| type III secretion system, membrane protein [Chlamydia
trachomatis 434/Bu]
gi|166155653|ref|YP_001653908.1| type III secretion system, membrane protein [Chlamydia
trachomatis L2b/UCH-1/proctitis]
gi|237802992|ref|YP_002888186.1| type III secretion system, membrane protein [Chlamydia
trachomatis B/Jali20/OT]
gi|237804914|ref|YP_002889068.1| type III secretion system, membrane protein [Chlamydia
trachomatis B/TZ1A828/OT]
gi|255311382|ref|ZP_05353952.1| type III secretion system, membrane protein [Chlamydia
trachomatis 6276]
gi|255317683|ref|ZP_05358929.1| type III secretion system, membrane protein [Chlamydia
trachomatis 6276s]
gi|255507161|ref|ZP_05382800.1| type III secretion system, membrane protein [Chlamydia
trachomatis D(s)2923]
gi|301336053|ref|ZP_07224297.1| type III secretion system, membrane protein [Chlamydia
trachomatis L2tet1]
gi|3329004|gb|AAC68165.1| Yop proteins translocation protein S [Chlamydia trachomatis
D/UW-3/CX]
gi|76167830|gb|AAX50838.1| SctS [Chlamydia trachomatis A/HAR-13]
gi|165930766|emb|CAP04263.1| type III secretion system, membrane protein [Chlamydia
trachomatis 434/Bu]
gi|165931641|emb|CAP07217.1| type III secretion system, membrane protein [Chlamydia
trachomatis L2b/UCH-1/proctitis]
gi|231273214|emb|CAX10127.1| type III secretion system, membrane protein [Chlamydia
trachomatis B/TZ1A828/OT]
gi|231274226|emb|CAX11020.1| type III secretion system, membrane protein [Chlamydia
trachomatis B/Jali20/OT]
gi|289525608|emb|CBJ15086.1| type III secretion system, membrane protein [Chlamydia
trachomatis Sweden2]
gi|296435169|gb|ADH17347.1| type III secretion system, membrane protein [Chlamydia
trachomatis E/150]
gi|296436097|gb|ADH18271.1| type III secretion system, membrane protein [Chlamydia
trachomatis G/9768]
gi|296437025|gb|ADH19195.1| type III secretion system, membrane protein [Chlamydia
trachomatis G/11222]
gi|296437957|gb|ADH20118.1| type III secretion system, membrane protein [Chlamydia
trachomatis G/11074]
gi|296438889|gb|ADH21042.1| type III secretion system, membrane protein [Chlamydia
trachomatis E/11023]
gi|297140458|gb|ADH97216.1| type III secretion system, membrane protein [Chlamydia
trachomatis G/9301]
gi|297748693|gb|ADI51239.1| type III secretion innner membrane protein SctS [Chlamydia
trachomatis D-EC]
gi|297749573|gb|ADI52251.1| type III secretion inner membrane protein SctS [Chlamydia
trachomatis D-LC]
Length = 94
Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 43/80 (53%)
Query: 4 ADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLI 63
+ + E + A+ IL SAP + A +GI++A QA TQIQE T F K++ +F TL+
Sbjct: 10 SILFEYSYEALLLILIISAPPIILASVVGIMVAIFQAATQIQEQTFAFAIKLVVIFGTLM 69
Query: 64 ISAPFIGGQISSFVTLVLSR 83
I+ ++ I F +
Sbjct: 70 ITGGWLCSMILRFAAQIFQN 89
>gi|34557827|ref|NP_907642.1| flagellar biosynthesis protein FliQ [Wolinella succinogenes DSM
1740]
gi|34483545|emb|CAE10542.1| FLAGELLAR BIOSYNTHETIC PROTEIN [Wolinella succinogenes]
Length = 88
Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 49/85 (57%)
Query: 3 EADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITL 62
EA ++ +A L S P+L + + +G+LI+ QA TQI E TLTFVPKI+ V + +
Sbjct: 2 EAKLMALAIETYKITLILSLPMLMAGLVVGLLISIFQATTQINEQTLTFVPKILVVIVVV 61
Query: 63 IISAPFIGGQISSFVTLVLSRIQSS 87
I++ P++ + F T ++ I
Sbjct: 62 ILTMPWMMNMLIDFTTRLIKMIPDF 86
>gi|259909719|ref|YP_002650075.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation
pathway-hrcS protein [Erwinia pyrifoliae Ep1/96]
gi|76152317|gb|ABA39818.1| HrcS [Erwinia pyrifoliae]
gi|224965341|emb|CAX56873.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation
pathway-hrcS protein [Erwinia pyrifoliae Ep1/96]
gi|283479805|emb|CAY75721.1| Type III secretion protein HrcS [Erwinia pyrifoliae DSM 12163]
gi|310766417|gb|ADP11367.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation
pathway-hrcS protein [Erwinia sp. Ejp617]
Length = 86
Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 48/81 (59%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
D+L + + AM ++ SAP L A+ +G+L++ LQA+ Q+Q+ TL F K++AV I L +
Sbjct: 2 DILNLFKQAMLLVVLLSAPPLLVAVIIGVLVSLLQAVMQLQDQTLPFAIKLVAVGIALAL 61
Query: 65 SAPFIGGQISSFVTLVLSRIQ 85
S +IG ++ + I
Sbjct: 62 SGRWIGVELIELAQQAFTMIP 82
>gi|209695729|ref|YP_002263659.1| flagellar biosynthesis protein FliQ [Aliivibrio salmonicida
LFI1238]
gi|208009682|emb|CAQ79981.1| polar flagellar assembly protein FliR [Aliivibrio salmonicida
LFI1238]
Length = 89
Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 50/88 (56%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +E+ R A++ +L ++ ++ +G+++A QA T I E TL+F+P++I +
Sbjct: 1 MTPEMAIELFRGALYMVLIMVCAIIIPSLLIGLVVAVFQAATSINEQTLSFLPRLIVTLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+L++ ++ + + +++R+ + L
Sbjct: 61 SLMLFGHWMTRMLMEYFYELIARMPTIL 88
>gi|225850262|ref|YP_002730496.1| flagellar biosynthetic protein FliQ [Persephonella marina EX-H1]
gi|225645466|gb|ACO03652.1| flagellar biosynthetic protein FliQ [Persephonella marina EX-H1]
Length = 89
Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 47/84 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + + + ++T L PV+ A +G+LI+ QA TQI E+TLTF+PKI+A +
Sbjct: 1 MTVDQAINLMQGMLFTSLMVGGPVILIAFIVGLLISIFQAATQIHEMTLTFIPKIVATIV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
LII ++ Q+ + VL I
Sbjct: 61 ALIIFGSWMFRQLVEYTQEVLKNI 84
>gi|163794131|ref|ZP_02188104.1| Flagellar biosynthesis protein FliQ [alpha proteobacterium
BAL199]
gi|159180745|gb|EDP65264.1| Flagellar biosynthesis protein FliQ [alpha proteobacterium
BAL199]
Length = 88
Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 40/84 (47%), Positives = 58/84 (69%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M E D L IAR A+ T+L+ S P++ A+ +G+ IA QALTQ+QE+TL FVPKI+ VF
Sbjct: 1 MTEEDALSIARDAVLTLLTMSGPIMAVALTVGLTIALFQALTQLQEMTLVFVPKIMVVFA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
+L++ PF+ QIS+F + +I
Sbjct: 61 SLMLLLPFMLAQISAFFEGIADKI 84
>gi|205352864|ref|YP_002226665.1| type III secretion protein [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|205272645|emb|CAR37555.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|309243392|gb|ADO51968.1| SsaS [Salmonella enterica subsp. enterica serovar Gallinarum]
gi|326627936|gb|EGE34279.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9]
Length = 88
Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 58/84 (69%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN++++ + +W +L +S PV+ A +G++++ +QALTQIQ+ TL F+ K++A+ I
Sbjct: 1 MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
TL++S P++ G + ++ ++ R+
Sbjct: 61 TLMVSYPWLSGILLNYTRQIMLRV 84
>gi|126734105|ref|ZP_01749852.1| flagellar biosynthetic protein FliQ [Roseobacter sp. CCS2]
gi|126716971|gb|EBA13835.1| flagellar biosynthetic protein FliQ [Roseobacter sp. CCS2]
Length = 89
Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 45/87 (51%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E + R +W S P+L A+ G+L+ QALT IQE+TLTFVPK+ A+
Sbjct: 1 MSETLFYDTLRQGLWVAFVISIPILSVALASGLLVGLFQALTSIQEMTLTFVPKLAAIIA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
I+ F+ ++ + L I +
Sbjct: 61 VFWITMAFMSEKLVALFQNTLIPIIAG 87
>gi|238918895|ref|YP_002932409.1| EsaS [Edwardsiella ictaluri 93-146]
gi|48256989|gb|AAT41684.1| type three secretion apparatus protein S [Edwardsiella ictaluri]
gi|84663103|gb|ABC60085.1| EsaS [Edwardsiella ictaluri 93-146]
gi|238868463|gb|ACR68174.1| EsaS [Edwardsiella ictaluri 93-146]
Length = 89
Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 51/85 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M A ++++A +W +L S PV+ A +G+L+ +QALTQIQ+ T++F K++A +
Sbjct: 1 MGTAQLVQLASELLWLVLILSLPVVLVASLVGVLVGLVQALTQIQDQTVSFAIKLVAACV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
TL ++ ++G + S+ + I
Sbjct: 61 TLALTYHWMGSALFSYAGRAMDMIA 85
>gi|156933431|ref|YP_001437347.1| flagellar biosynthesis protein FliQ [Cronobacter sakazakii ATCC
BAA-894]
gi|156531685|gb|ABU76511.1| hypothetical protein ESA_01249 [Cronobacter sakazakii ATCC
BAA-894]
Length = 90
Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 52/85 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + AM L+ +AP+L A+ G+ I+ LQA TQI E+TL+F+PKI+AVF+
Sbjct: 2 MTPESVMMMGTEAMKVALALAAPLLLVALVTGLFISILQAATQINEMTLSFIPKILAVFV 61
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
++ + P++ + ++ + S +
Sbjct: 62 VIVAAGPWMLNLLLDYMRTLFSNLP 86
>gi|89075524|ref|ZP_01161935.1| flagellar biosynthesis protein [Photobacterium sp. SKA34]
gi|90579938|ref|ZP_01235746.1| flagellar biosynthesis protein [Vibrio angustum S14]
gi|89048796|gb|EAR54367.1| flagellar biosynthesis protein [Photobacterium sp. SKA34]
gi|90438823|gb|EAS64006.1| flagellar biosynthesis protein [Vibrio angustum S14]
Length = 89
Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 44/88 (50%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +EI + A++ +L ++ + +G+++A QA T I E TL+F+P+++ +
Sbjct: 1 MTPEAFVEIFQEALYMVLIMVCAIVIPGLLIGLVVAVFQAATSINEQTLSFLPRLVVTLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L+ + + + ++ +I L
Sbjct: 61 ALMFFGHMMTQMLMDYFYRIIDQIPQLL 88
>gi|187478199|ref|YP_786223.1| flagellar biosynthetic protein FliQ [Bordetella avium 197N]
gi|115422785|emb|CAJ49313.1| flagellar biosynthetic protein FliQ [Bordetella avium 197N]
Length = 89
Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 50/85 (58%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ +A AM L + P+L + +G++I+ QA TQI E+TL+F+PK++A+
Sbjct: 1 MTAEAVMTMAYQAMKIALVLAGPLLLVTLVVGLVISVFQAATQINEMTLSFIPKLLAMCG 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
L++ P++ + ++ ++S I
Sbjct: 61 VLVLLGPWLIELLVDYIRQLISNIP 85
>gi|88800468|ref|ZP_01116032.1| flagellar biosynthesis protein [Reinekea sp. MED297]
gi|88776798|gb|EAR08009.1| flagellar biosynthesis protein [Reinekea sp. MED297]
Length = 89
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 17/85 (20%), Positives = 49/85 (57%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ ++ ++ A++ ++ + ++ ++ +G++++ QA TQI E TL+F+P+++ +
Sbjct: 1 MDAMNIADLFSEALYIVVIIVSIIIVPSLIVGLIVSTFQAATQINEQTLSFLPRLLVTLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
+I + P++ ++ F + I
Sbjct: 61 MMIFAGPYLVNKVVEFANTIYMNIP 85
>gi|260776472|ref|ZP_05885367.1| flagellar biosynthesis protein FliQ [Vibrio coralliilyticus ATCC
BAA-450]
gi|260607695|gb|EEX33960.1| flagellar biosynthesis protein FliQ [Vibrio coralliilyticus ATCC
BAA-450]
Length = 89
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 48/88 (54%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +E+ R A+W +L ++ ++ +G+++A QA T I E TL+F+P+++ +
Sbjct: 1 MTPEVFVELFRGALWMVLLMVCAIIIPSLLIGLIVAIFQAATSINEQTLSFLPRLVVTLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L++ A ++ + + ++ R+ L
Sbjct: 61 ALMLFAHWMTQMLMEYFFSIVERLPQVL 88
>gi|171322879|ref|ZP_02911584.1| type III secretion protein, HrpO family [Burkholderia ambifaria
MEX-5]
gi|171091753|gb|EDT37283.1| type III secretion protein, HrpO family [Burkholderia ambifaria
MEX-5]
Length = 87
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 48/82 (58%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ D++ + M L S PV+ A G+ I+FLQA+T +QE ++++ K++AV +
Sbjct: 1 MDIDDLIRLTSQGMMLCLYISLPVVLVAAASGLAISFLQAITSLQEQSISYGVKLVAVTV 60
Query: 61 TLIISAPFIGGQISSFVTLVLS 82
T+ I+ P+ +I F +LS
Sbjct: 61 TVAIAGPWAAAEILHFAQQLLS 82
>gi|261252333|ref|ZP_05944906.1| flagellar biosynthesis protein FliQ [Vibrio orientalis CIP
102891]
gi|260935724|gb|EEX91713.1| flagellar biosynthesis protein FliQ [Vibrio orientalis CIP
102891]
Length = 89
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 48/88 (54%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +E+ R A+W +L ++ ++ +G+++A QA T I E TL+F+P++I +
Sbjct: 1 MTPEMFVELFRDALWMVLIMVCAIIIPSLLIGLVVAIFQAATSINEQTLSFLPRLIVTLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L++ A ++ + F ++ R+ L
Sbjct: 61 ALMLFAHWMTQILMEFFFSMIERLPQVL 88
>gi|254417849|ref|ZP_05031573.1| flagellar biosynthetic protein FliQ [Brevundimonas sp. BAL3]
gi|196184026|gb|EDX79002.1| flagellar biosynthetic protein FliQ [Brevundimonas sp. BAL3]
Length = 87
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 35/86 (40%), Positives = 55/86 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN A+VL++ R A+W + PVL + +G++I QALTQIQE TL + PKIIA+F+
Sbjct: 1 MNGAEVLDVGRDAIWLTIQLCLPVLLVGLVVGVVIGLFQALTQIQEQTLIYAPKIIAIFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
+L++ P +G + F+ + +RI
Sbjct: 61 SLLLFLPLMGALLGGFMRQIAARIAG 86
>gi|311279109|ref|YP_003941340.1| flagellar biosynthetic protein FliQ [Enterobacter cloacae SCF1]
gi|308748304|gb|ADO48056.1| flagellar biosynthetic protein FliQ [Enterobacter cloacae SCF1]
Length = 89
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/85 (38%), Positives = 54/85 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + AM L+ +AP+L A+ G++I+ LQA TQI E+TL+F+PKIIAVF+
Sbjct: 1 MTPESVMMLGTEAMKVALALAAPLLLVALITGLIISILQAATQINEMTLSFIPKIIAVFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
+II+ P++ + +V + S +
Sbjct: 61 AIIIAGPWMLNLLLDYVRTLFSNLP 85
>gi|157147126|ref|YP_001454445.1| hypothetical protein CKO_02903 [Citrobacter koseri ATCC BAA-895]
gi|157084331|gb|ABV14009.1| hypothetical protein CKO_02903 [Citrobacter koseri ATCC BAA-895]
Length = 90
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 42/83 (50%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN +I + +L SA + ++ +G+ ++ QA TQI E TL+F+P+++
Sbjct: 2 MNMDTAGDIMATGIHLVLLISAVAIIPSLIVGLCVSIFQATTQINEQTLSFLPRLVVTLG 61
Query: 61 TLIISAPFIGGQISSFVTLVLSR 83
LI + ++ Q+ F + +
Sbjct: 62 VLIFAGKWMLTQLVDFTIQIFHQ 84
>gi|14588841|emb|CAA68099.2| HrcS protein [Pantoea agglomerans]
Length = 83
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 46/79 (58%)
Query: 7 LEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISA 66
+ + + AM ++ SAP L A+ +G+L++ LQA+ Q+Q+ TL F K++AV I L +S
Sbjct: 1 MNLFKQAMLLVVLLSAPPLLVAVIVGVLVSLLQAVMQLQDQTLPFAIKLVAVGIALALSG 60
Query: 67 PFIGGQISSFVTLVLSRIQ 85
+IG ++ + I
Sbjct: 61 RWIGVELLELAQQRFAMIP 79
>gi|24374729|ref|NP_718772.1| flagellar biosynthetic protein FliQ [Shewanella oneidensis MR-1]
gi|24349389|gb|AAN56216.1|AE015759_8 flagellar biosynthetic protein FliQ [Shewanella oneidensis MR-1]
Length = 89
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 47/85 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +++I R A+ I+ + ++ + +G+++A QA T I E TL+F+P++I +
Sbjct: 1 MTPEALIDIFREALAVIVMMVSAIVLPGLGIGLIVAVFQAATSINEQTLSFLPRLIVTLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
L++ ++ + F +++RI
Sbjct: 61 ALMLMGHWLVQTLMDFFIEMVNRIP 85
>gi|28868602|ref|NP_791221.1| type III secretion protein HrcS [Pseudomonas syringae pv. tomato
str. DC3000]
gi|213968265|ref|ZP_03396409.1| type III secretion protein HrcS [Pseudomonas syringae pv. tomato
T1]
gi|301381806|ref|ZP_07230224.1| type III secretion protein HrcS [Pseudomonas syringae pv. tomato
Max13]
gi|302061997|ref|ZP_07253538.1| type III secretion protein HrcS [Pseudomonas syringae pv. tomato
K40]
gi|302135079|ref|ZP_07261069.1| type III secretion protein HrcS [Pseudomonas syringae pv. tomato
NCPPB 1108]
gi|11276517|gb|AAG33885.1| HrcS [Pseudomonas syringae pv. tomato]
gi|28851840|gb|AAO54916.1| type III secretion protein HrcS [Pseudomonas syringae pv. tomato
str. DC3000]
gi|213926903|gb|EEB60454.1| type III secretion protein HrcS [Pseudomonas syringae pv. tomato
T1]
gi|330872919|gb|EGH07068.1| type III secretion protein HrcS [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
gi|330963056|gb|EGH63316.1| type III secretion protein HrcS [Pseudomonas syringae pv.
actinidiae str. M302091]
gi|331015104|gb|EGH95160.1| type III secretion protein HrcS [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 88
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 49/83 (59%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
+ L + + M+ ++ +AP L A+ +G++ + LQAL QIQ+ TL F K+ AV +TL +
Sbjct: 2 EALALFKQGMFLVVILTAPPLGVAVLVGVITSLLQALMQIQDQTLPFGIKLAAVGMTLAM 61
Query: 65 SAPFIGGQISSFVTLVLSRIQSS 87
+ +IG ++ F+ + I S
Sbjct: 62 TGRWIGVELIQFINMAFDLIARS 84
>gi|238898598|ref|YP_002924279.1| type III needle complex export protein [Candidatus Hamiltonella
defensa 5AT (Acyrthosiphon pisum)]
gi|75906095|gb|ABA29438.1| putative type III secretion system protein [Candidatus
Hamiltonella defensa]
gi|229466357|gb|ACQ68131.1| type III needle complex export protein [Candidatus Hamiltonella
defensa 5AT (Acyrthosiphon pisum)]
Length = 86
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 45/78 (57%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
D++ A++ IL+ SA + A +G++I +Q +TQ+QE TL F K+++V + L +
Sbjct: 3 DLVFAGNKALYLILTLSAIPVAVATAVGLIIGLIQTVTQLQEQTLPFGIKLLSVSLCLFL 62
Query: 65 SAPFIGGQISSFVTLVLS 82
A + G + ++ V+
Sbjct: 63 LAGWYGDTLLAYAREVIG 80
>gi|320538197|ref|ZP_08038092.1| flagellar biosynthetic protein FliQ [Treponema phagedenis F0421]
gi|320145014|gb|EFW36735.1| flagellar biosynthetic protein FliQ [Treponema phagedenis F0421]
Length = 89
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 48/88 (54%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + V+ + R ++ ++ P+L +A+ +G+++A QA T IQE TLTFVPKI+ +
Sbjct: 1 MTQGTVITLMREGIFQVVILITPILLAALIVGLIVAIFQATTSIQEQTLTFVPKILTILG 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+ + ++ + ++ + I +
Sbjct: 61 MIALLGGWMLAILQNYTIRLFEIIPQLV 88
>gi|83716881|ref|YP_438952.1| type III secretion inner membrane protein SctS [Burkholderia
thailandensis E264]
gi|167615482|ref|ZP_02384117.1| type III secretion inner membrane protein SctS [Burkholderia
thailandensis Bt4]
gi|257142056|ref|ZP_05590318.1| type III secretion inner membrane protein SctS [Burkholderia
thailandensis E264]
gi|83650706|gb|ABC34770.1| type III secretion inner membrane protein SctS [Burkholderia
thailandensis E264]
Length = 87
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 47/82 (57%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M D++ + M L S PV+ A G+ I+FLQA+T +QE ++++ K++AV +
Sbjct: 1 METDDLIRLTSQGMMLCLYISLPVVLVAAASGLAISFLQAITSLQEQSISYGVKLVAVTV 60
Query: 61 TLIISAPFIGGQISSFVTLVLS 82
T+ I+ P+ +I F +L+
Sbjct: 61 TVAITGPWAAAEILHFAQQLLT 82
>gi|312148034|gb|ADQ30693.1| flagellar biosynthetic protein FliQ [Borrelia burgdorferi JD1]
Length = 87
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 57/86 (66%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +L + R ++ I+ SAP+L A+ +G+LI+ QA+T IQ+ TL+F+PKII + +
Sbjct: 1 MTAGHILYLIRISIENIIILSAPMLIIALIVGLLISIFQAITSIQDQTLSFIPKIIVILL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
T++I P+I ++ F ++ S++Q+
Sbjct: 61 TIVIFGPWILNKLMQFTYMIFSQLQN 86
>gi|15594619|ref|NP_212408.1| flagellar biosynthesis protein (fliQ) [Borrelia burgdorferi B31]
gi|195941372|ref|ZP_03086754.1| flagellar biosynthesis protein [Borrelia burgdorferi 80a]
gi|216264187|ref|ZP_03436179.1| flagellar biosynthetic protein FliQ [Borrelia burgdorferi 156a]
gi|218249705|ref|YP_002374797.1| flagellar biosynthetic protein FliQ [Borrelia burgdorferi ZS7]
gi|221217705|ref|ZP_03589173.1| flagellar biosynthetic protein FliQ [Borrelia burgdorferi 72a]
gi|223888945|ref|ZP_03623536.1| flagellar biosynthetic protein FliQ [Borrelia burgdorferi 64b]
gi|224533130|ref|ZP_03673730.1| flagellar biosynthetic protein FliQ [Borrelia burgdorferi
WI91-23]
gi|224533782|ref|ZP_03674370.1| flagellar biosynthetic protein FliQ [Borrelia burgdorferi
CA-11.2a]
gi|225549140|ref|ZP_03770115.1| flagellar biosynthetic protein FliQ [Borrelia burgdorferi 94a]
gi|225550226|ref|ZP_03771186.1| flagellar biosynthetic protein FliQ [Borrelia burgdorferi 118a]
gi|226320575|ref|ZP_03796135.1| flagellar biosynthetic protein FliQ [Borrelia burgdorferi 29805]
gi|226321592|ref|ZP_03797118.1| flagellar biosynthetic protein FliQ [Borrelia burgdorferi Bol26]
gi|3023774|sp|Q44906|FLIQ_BORBU RecName: Full=Flagellar biosynthetic protein FliQ
gi|1165259|gb|AAA85598.1| FliQ [Borrelia burgdorferi]
gi|1185060|gb|AAB58969.1| flagellar export protein [Borrelia burgdorferi]
gi|2688192|gb|AAC66674.1| flagellar biosynthesis protein (fliQ) [Borrelia burgdorferi B31]
gi|215980660|gb|EEC21467.1| flagellar biosynthetic protein FliQ [Borrelia burgdorferi 156a]
gi|218164893|gb|ACK74954.1| flagellar biosynthetic protein FliQ [Borrelia burgdorferi ZS7]
gi|221192382|gb|EEE18601.1| flagellar biosynthetic protein FliQ [Borrelia burgdorferi 72a]
gi|223885761|gb|EEF56860.1| flagellar biosynthetic protein FliQ [Borrelia burgdorferi 64b]
gi|224511857|gb|EEF82258.1| flagellar biosynthetic protein FliQ [Borrelia burgdorferi
WI91-23]
gi|224513075|gb|EEF83438.1| flagellar biosynthetic protein FliQ [Borrelia burgdorferi
CA-11.2a]
gi|225369338|gb|EEG98791.1| flagellar biosynthetic protein FliQ [Borrelia burgdorferi 118a]
gi|225370366|gb|EEG99804.1| flagellar biosynthetic protein FliQ [Borrelia burgdorferi 94a]
gi|226232781|gb|EEH31534.1| flagellar biosynthetic protein FliQ [Borrelia burgdorferi Bol26]
gi|226233994|gb|EEH32715.1| flagellar biosynthetic protein FliQ [Borrelia burgdorferi 29805]
gi|312149214|gb|ADQ29285.1| flagellar biosynthetic protein FliQ [Borrelia burgdorferi N40]
Length = 87
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 56/86 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +L + R ++ I+ SAP+L A+ +G+LI+ QA+T IQ+ TL+F+PKII + +
Sbjct: 1 MTAGHILYLIRISIENIIILSAPMLIIALIVGLLISIFQAITSIQDQTLSFIPKIIVILL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
++I P+I ++ F ++ S++Q+
Sbjct: 61 VIVIFGPWILNKLMQFTYMIFSQLQN 86
>gi|114562371|ref|YP_749884.1| flagellar biosynthetic protein FliQ [Shewanella frigidimarina
NCIMB 400]
gi|114333664|gb|ABI71046.1| flagellar biosynthetic protein FliQ [Shewanella frigidimarina
NCIMB 400]
Length = 89
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 46/85 (54%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ +++I R A+ I+ + ++ +F+G+++A QA T I E TL+F+P+++
Sbjct: 1 MSPESLIDIFREALSVIVLIVSAIILPGLFIGLIVAVFQAATSINEQTLSFLPRLLVTLF 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
L+ ++ + F +++ I
Sbjct: 61 ALMFLGHWLVQTMMDFFFEMVNLIP 85
>gi|269138237|ref|YP_003294937.1| type III secretion apparatus [Edwardsiella tarda EIB202]
gi|55981989|gb|AAV69419.1| EsaS [Edwardsiella tarda]
gi|61743014|gb|AAX55234.1| EsaS [Edwardsiella tarda]
gi|267983897|gb|ACY83726.1| type III secretion apparatus [Edwardsiella tarda EIB202]
gi|304558280|gb|ADM40944.1| EsaS [Edwardsiella tarda FL6-60]
Length = 89
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 52/85 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +A ++++A +W +L S PV+ A +G+L+ +QALTQIQ+ T++F K++A +
Sbjct: 1 MGKAQLVQLASELLWLVLILSLPVVLVASLVGVLVGLVQALTQIQDQTVSFAIKLVAASV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
TL ++ ++G + S+ + I
Sbjct: 61 TLALTYHWMGSALFSYAGRAMDLIA 85
>gi|45440281|ref|NP_991820.1| putative type III secretion apparatus protein [Yersinia pestis
biovar Microtus str. 91001]
gi|51594683|ref|YP_068874.1| type III secretion apparatus protein EscS/SsaS/YscS [Yersinia
pseudotuberculosis IP 32953]
gi|108810001|ref|YP_653917.1| putative type III secretion apparatus protein [Yersinia pestis
Antiqua]
gi|108813556|ref|YP_649323.1| type III secretion apparatus protein [Yersinia pestis Nepal516]
gi|145600946|ref|YP_001165022.1| type III secretion apparatus protein [Yersinia pestis Pestoides
F]
gi|150260680|ref|ZP_01917408.1| putative type III secretion apparatus protein [Yersinia pestis
CA88-4125]
gi|165926783|ref|ZP_02222615.1| type III secretion protein, HrpO family [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165936431|ref|ZP_02224999.1| type III secretion protein, HrpO family [Yersinia pestis biovar
Orientalis str. IP275]
gi|166010452|ref|ZP_02231350.1| type III secretion protein, HrpO family [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166213899|ref|ZP_02239934.1| type III secretion protein, HrpO family [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167418745|ref|ZP_02310498.1| type III secretion protein, HrpO family [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167426120|ref|ZP_02317873.1| type III secretion protein, HrpO family [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|170026114|ref|YP_001722619.1| HrpO family type III secretion protein [Yersinia
pseudotuberculosis YPIII]
gi|186893686|ref|YP_001870798.1| HrpO family type III secretion protein [Yersinia
pseudotuberculosis PB1/+]
gi|218927478|ref|YP_002345353.1| putative type III secretion apparatus protein [Yersinia pestis
CO92]
gi|229836526|ref|ZP_04456692.1| putative type III secretion apparatus protein [Yersinia pestis
Pestoides A]
gi|229840134|ref|ZP_04460293.1| putative type III secretion apparatus protein [Yersinia pestis
biovar Orientalis str. PEXU2]
gi|229842215|ref|ZP_04462370.1| putative type III secretion apparatus protein [Yersinia pestis
biovar Orientalis str. India 195]
gi|229904046|ref|ZP_04519159.1| putative type III secretion apparatus protein [Yersinia pestis
Nepal516]
gi|270488969|ref|ZP_06206043.1| type III secretion protein, HrpO family [Yersinia pestis KIM D27]
gi|45435137|gb|AAS60697.1| putative type III secretion apparatus protein [Yersinia pestis
biovar Microtus str. 91001]
gi|51587965|emb|CAH19568.1| putative type III secretion apparatus protein EscS/SsaS/YscS
[Yersinia pseudotuberculosis IP 32953]
gi|108777204|gb|ABG19723.1| type III secretion apparatus protein [Yersinia pestis Nepal516]
gi|108781914|gb|ABG15972.1| putative type III secretion apparatus protein [Yersinia pestis
Antiqua]
gi|115346089|emb|CAL18957.1| putative type III secretion apparatus protein [Yersinia pestis
CO92]
gi|145212642|gb|ABP42049.1| type III secretion apparatus protein [Yersinia pestis Pestoides
F]
gi|149290088|gb|EDM40165.1| putative type III secretion apparatus protein [Yersinia pestis
CA88-4125]
gi|165915547|gb|EDR34156.1| type III secretion protein, HrpO family [Yersinia pestis biovar
Orientalis str. IP275]
gi|165921406|gb|EDR38630.1| type III secretion protein, HrpO family [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165990542|gb|EDR42843.1| type III secretion protein, HrpO family [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166204874|gb|EDR49354.1| type III secretion protein, HrpO family [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166962739|gb|EDR58760.1| type III secretion protein, HrpO family [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167054831|gb|EDR64633.1| type III secretion protein, HrpO family [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|169752648|gb|ACA70166.1| type III secretion protein, HrpO family [Yersinia
pseudotuberculosis YPIII]
gi|186696712|gb|ACC87341.1| type III secretion protein, HrpO family [Yersinia
pseudotuberculosis PB1/+]
gi|229679816|gb|EEO75919.1| putative type III secretion apparatus protein [Yersinia pestis
Nepal516]
gi|229690525|gb|EEO82579.1| putative type III secretion apparatus protein [Yersinia pestis
biovar Orientalis str. India 195]
gi|229696500|gb|EEO86547.1| putative type III secretion apparatus protein [Yersinia pestis
biovar Orientalis str. PEXU2]
gi|229706210|gb|EEO92218.1| putative type III secretion apparatus protein [Yersinia pestis
Pestoides A]
gi|270337473|gb|EFA48250.1| type III secretion protein, HrpO family [Yersinia pestis KIM D27]
Length = 97
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 52/83 (62%)
Query: 4 ADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLI 63
A ++ +A +W +L S PV+ A +G++I+ +QALTQIQ+ TL F+ K++AV TL+
Sbjct: 12 AIIVHLATELLWLVLLLSLPVVVVASTVGLVISLVQALTQIQDQTLQFLIKLLAVSATLL 71
Query: 64 ISAPFIGGQISSFVTLVLSRIQS 86
++ ++G + ++ +I S
Sbjct: 72 MTYHWMGATLLNYTQQSFLQITS 94
>gi|312958829|ref|ZP_07773348.1| type III secretion system rscS [Pseudomonas fluorescens WH6]
gi|311286599|gb|EFQ65161.1| type III secretion system rscS [Pseudomonas fluorescens WH6]
Length = 87
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 48/81 (59%)
Query: 7 LEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISA 66
+ + + M ++ SAP L A+ +G+L + +QAL Q+Q+ TL F K++AV +TLI++
Sbjct: 4 IVLFKQGMLLVVVLSAPPLIVAVVVGVLTSLVQALMQVQDQTLPFGVKLVAVGVTLIMTG 63
Query: 67 PFIGGQISSFVTLVLSRIQSS 87
+IG ++ + L I S
Sbjct: 64 RWIGVELIQLINLTFEMIGRS 84
>gi|85706169|ref|ZP_01037264.1| flagellar biosynthetic protein FliQ [Roseovarius sp. 217]
gi|85669333|gb|EAQ24199.1| flagellar biosynthetic protein FliQ [Roseovarius sp. 217]
Length = 89
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 47/87 (54%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
+NE + R A+W + S P+L A+ G+++ QALT IQE+TLTFVPK+ A+ +
Sbjct: 2 LNEVLFFDTLREALWISVIISFPILTVALLAGLVVGLFQALTSIQELTLTFVPKLGAIIV 61
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
++ F+ + F L I +
Sbjct: 62 VFWVTMGFMTQTLVRFFQDRLIPIITG 88
>gi|34498078|ref|NP_902293.1| surface presentation of antigens secretory protein
[Chromobacterium violaceum ATCC 12472]
gi|34103933|gb|AAQ60293.1| surface presentation of antigens; secretory proteins
[Chromobacterium violaceum ATCC 12472]
Length = 86
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 42/77 (54%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
D++ A++ +L SA + A +G+L+ Q +TQ+QE TL F K++ V + L +
Sbjct: 3 DLVFAGNKALYLVLMMSAWPIIVATVIGLLVGLFQTVTQLQEQTLPFGIKLLGVSVCLFL 62
Query: 65 SAPFIGGQISSFVTLVL 81
+ + G + +F V+
Sbjct: 63 LSGWYGETLLAFGREVM 79
>gi|296103628|ref|YP_003613774.1| Flagellar biosynthetic protein fliQ [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295058087|gb|ADF62825.1| Flagellar biosynthetic protein fliQ [Enterobacter cloacae subsp.
cloacae ATCC 13047]
Length = 89
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ I A+ L SAP+L +A+ G++I+ LQA TQ+ E+T+TF+PKI+ +
Sbjct: 1 MTPESVMVIGMQAIKVGLMVSAPLLVAALVTGLIISILQAATQVNEMTMTFIPKILMIVG 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
+ P++ + V + I
Sbjct: 61 VAVALGPWMMKIFIEYTRAVFASIP 85
>gi|312884900|ref|ZP_07744590.1| flagellar biosynthesis protein FliQ [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309367377|gb|EFP94939.1| flagellar biosynthesis protein FliQ [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 89
Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 48/88 (54%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +E+ R A+W +L ++ ++ +G+++A QA T I E TL+F+P++I +
Sbjct: 1 MTPEMFVELFREALWVVLIMVCAIIIPSLLIGLIVAIFQAATSINEQTLSFLPRLIVTLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L++ A ++ + F ++ R+ L
Sbjct: 61 ALMMFAHWMTQILMEFFFSMIERLPQVL 88
>gi|302185357|ref|ZP_07262030.1| HrpO family type III secretion protein [Pseudomonas syringae pv.
syringae 642]
gi|256259403|gb|ACU65040.1| HrcS [Pseudomonas syringae pv. syringae]
Length = 87
Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 48/83 (57%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
+ L + + M ++ +AP L A+ +G+L + +QAL Q+Q+ TL F K++AV +TL +
Sbjct: 2 EALNLFKQGMILVVLLTAPPLIVAVAVGVLTSLVQALMQVQDQTLPFGLKLLAVGLTLAM 61
Query: 65 SAPFIGGQISSFVTLVLSRIQSS 87
+ +IG ++ L + I S
Sbjct: 62 TGRWIGVELIQLTNLAFNMIAQS 84
>gi|330445377|ref|ZP_08309029.1| flagellar biosynthetic protein FliQ [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
gi|328489568|dbj|GAA03526.1| flagellar biosynthetic protein FliQ [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
Length = 89
Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 45/88 (51%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +EI + A++ +L ++ + +G+++A QA T I E TL+F+P+++ +
Sbjct: 1 MTPEAFVEIFQEALYMVLVMVCAIVIPGLLIGLVVAVFQAATSINEQTLSFLPRLVVTLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L++ + + + ++ +I L
Sbjct: 61 ALMLFGHMMTQMLMDYFYRIIDQIPQLL 88
>gi|321399614|emb|CBJ44626.1| putative type III secretion system protein HrcS [Pseudomonas sp.
MTE-25-201]
gi|321399638|emb|CBJ44644.1| putative type III secretion system protein HrcS [Pseudomonas sp.
MTR-25-321]
gi|321399646|emb|CBJ44650.1| putative type III secretion system protein HrcS [Pseudomonas sp.
MTR-48-521]
gi|321399650|emb|CBJ44653.1| putative type III secretion system protein HrcS [Pseudomonas sp.
MTR-48-522]
gi|321399662|emb|CBJ44662.1| putative type III secretion system protein HrcS [Pseudomonas sp.
MTR-J5-522]
Length = 84
Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 48/82 (58%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
D L + + M ++ SAP L A+ +G+L + +QAL QIQ+ TL F K++AV +TL++
Sbjct: 2 DALTLFKEGMLLVVLLSAPPLIVAVVVGVLTSLVQALMQIQDQTLPFGIKLVAVGLTLLV 61
Query: 65 SAPFIGGQISSFVTLVLSRIQS 86
+ +IG ++ + + +
Sbjct: 62 TGRWIGVELLGLLRRAFEMMAN 83
>gi|225871937|ref|YP_002753391.1| flagellar biosynthetic protein FliQ [Acidobacterium capsulatum
ATCC 51196]
gi|225792083|gb|ACO32173.1| flagellar biosynthetic protein FliQ [Acidobacterium capsulatum
ATCC 51196]
Length = 91
Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 46/88 (52%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V ++ R + + SAP L A + +++ LQ LT IQ+ T++ VP+++A +
Sbjct: 1 MGPDQVTDLMRQLLREAMLLSAPALLVAAAVSFVLSLLQTLTSIQDQTISTVPRLLATTV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L++ AP++ ++ + + S L
Sbjct: 61 VLLVGAPWLLRHLAGYTLELFSNFHRYL 88
>gi|46562154|ref|YP_009143.1| HrpO family type III secretion protein [Desulfovibrio vulgaris
str. Hildenborough]
gi|120586863|ref|YP_961208.1| HrpO family type III secretion protein [Desulfovibrio vulgaris
subsp. vulgaris DP4]
gi|46447691|gb|AAS94357.1| type III secretion protein, HrpO family [Desulfovibrio vulgaris
str. Hildenborough]
gi|120564277|gb|ABM30020.1| type III secretion protein, HrpO family [Desulfovibrio vulgaris
DP4]
gi|311235487|gb|ADP88340.1| type III secretion protein, HrpO family [Desulfovibrio vulgaris
RCH1]
Length = 86
Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 48/79 (60%)
Query: 3 EADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITL 62
++ + A A++ +L S P + A +GI+++ +QA+TQ+QE TLTF K+IAV +TL
Sbjct: 2 DSMPMTYAVKALYLVLMLSMPPIIVASVVGIVLSLIQAITQLQEQTLTFGVKLIAVVLTL 61
Query: 63 IISAPFIGGQISSFVTLVL 81
+ + GG++ F +
Sbjct: 62 FLMGGWFGGELLRFADEIF 80
>gi|15835466|ref|NP_297225.1| type III secretion inner membrane protein SctS [Chlamydia
muridarum Nigg]
gi|270285646|ref|ZP_06195040.1| type III secretion inner membrane protein SctS [Chlamydia
muridarum Nigg]
gi|270289655|ref|ZP_06195957.1| type III secretion inner membrane protein SctS [Chlamydia
muridarum Weiss]
gi|301337042|ref|ZP_07225244.1| type III secretion inner membrane protein SctS [Chlamydia
muridarum MopnTet14]
gi|8163335|gb|AAF73611.1| type III secretion inner membrane protein SctS [Chlamydia
muridarum Nigg]
Length = 94
Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 44/80 (55%)
Query: 4 ADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLI 63
+ + E + A+ IL SAP + A +GI++A QA TQIQE T F K++ +F TL+
Sbjct: 10 SMLFEYSYEALLLILIISAPPIILASIVGIMVAIFQAATQIQEQTFAFAIKLVVIFGTLM 69
Query: 64 ISAPFIGGQISSFVTLVLSR 83
I+ ++ I F + +
Sbjct: 70 ITGGWLCSMILRFAAQIFTN 89
>gi|260893863|ref|YP_003239960.1| flagellar biosynthetic protein FliQ [Ammonifex degensii KC4]
gi|260866004|gb|ACX53110.1| flagellar biosynthetic protein FliQ [Ammonifex degensii KC4]
Length = 90
Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 51/86 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M++A L++ A + +L + P L + +G+++ LQA TQIQ+ ++FVPKI+AVF+
Sbjct: 1 MSQAMALDLVTKAFFLVLLLAGPALLVSALVGLVVGILQATTQIQDQMISFVPKIVAVFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
TL + P + SF +++R
Sbjct: 61 TLALCFPLFLRLMISFTQEIMARFAG 86
>gi|167834871|ref|ZP_02461754.1| flagellar biosynthesis protein FliQ [Burkholderia thailandensis
MSMB43]
Length = 90
Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 54/86 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +V+ +A AM L +AP+L A+ +G++++ QA TQI E TL+F+PK++AV
Sbjct: 1 MTPENVMTLAHQAMSIGLLLAAPLLLVALAVGLVVSLFQAATQINEATLSFIPKLLAVAA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
T++I+ P++ + ++ L R+ +
Sbjct: 61 TMVIAGPWMLSTMIDYLRETLLRVAT 86
>gi|90411034|ref|ZP_01219048.1| flagellar biosynthesis protein [Photobacterium profundum 3TCK]
gi|90328247|gb|EAS44558.1| flagellar biosynthesis protein [Photobacterium profundum 3TCK]
Length = 89
Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 45/88 (51%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +EI + A++ +L ++ + +G+++A QA T I E TL+F+P++I +
Sbjct: 1 MTPEAFVEIFQEALFMVLIMVCAIVVPGLLIGLVVAVFQAATSINEQTLSFLPRLIVTLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L+ + G + + ++ RI L
Sbjct: 61 ALMFFGHMMTGMLMDYFFRIIDRIPQIL 88
>gi|51587319|emb|CAE53694.1| putative HrcS [Pseudomonas fluorescens]
Length = 84
Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 47/82 (57%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
D L + + M ++ SAP L A+ +G+L + +QAL QIQ+ TL F K++AV +TL++
Sbjct: 2 DALTLFKEGMLLVVLLSAPPLIVAVIVGVLTSLVQALMQIQDQTLPFGIKLVAVGLTLLV 61
Query: 65 SAPFIGGQISSFVTLVLSRIQS 86
+ +IG ++ + +
Sbjct: 62 TGRWIGVELLGLLRRAFEMTAN 83
>gi|238920322|ref|YP_002933837.1| flagellar biosynthetic protein FliQ, [Edwardsiella ictaluri
93-146]
gi|238869891|gb|ACR69602.1| flagellar biosynthetic protein FliQ, putative [Edwardsiella
ictaluri 93-146]
Length = 89
Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 55/86 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + AM L+ + P+L +++ G+LI+ LQA TQI E+TL+F+PKI+AVF
Sbjct: 1 MTPESVMALGYQAMKVGLALATPLLLASLISGLLISLLQAATQINEMTLSFIPKILAVFA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
TL+++ P++ + ++ + S + +
Sbjct: 61 TLVVAGPWMLSLLLDYMRTLFSSLPT 86
>gi|51587307|emb|CAE53685.1| putative HrcS [Pseudomonas fluorescens bv. II]
Length = 84
Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 47/82 (57%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
D L + + M + SAP L A+ +G+L + +QAL QIQ+ TL F K++AV +TL++
Sbjct: 2 DALTLFKEGMLLAVLLSAPPLIVAVIVGVLTSLVQALMQIQDQTLPFGIKLVAVGLTLLV 61
Query: 65 SAPFIGGQISSFVTLVLSRIQS 86
+ +IG ++ + + +
Sbjct: 62 TGRWIGVELLGLLRRAFEMMAN 83
>gi|321399634|emb|CBJ44641.1| putative type III secretion system protein HrcS [Pseudomonas sp.
MTE-J5-708]
Length = 84
Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 48/82 (58%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
D L + + M ++ SAP L A+ +G+L + +QAL QIQ+ TL F K++AV +TL++
Sbjct: 2 DALTLFKEGMMLVVLLSAPPLIVAVVVGVLTSLVQALMQIQDQTLPFGIKLVAVGLTLLV 61
Query: 65 SAPFIGGQISSFVTLVLSRIQS 86
+ +IG ++ + + +
Sbjct: 62 TGRWIGVELLGLLRRAFEMMAN 83
>gi|307824490|ref|ZP_07654715.1| flagellar biosynthetic protein FliQ [Methylobacter tundripaludum
SV96]
gi|307734474|gb|EFO05326.1| flagellar biosynthetic protein FliQ [Methylobacter tundripaludum
SV96]
Length = 89
Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 47/88 (53%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + + + AM + +APVL ++ +G++IA QA TQI E TLTFVPK+I + I
Sbjct: 1 MVPETIFMVGQEAMIVAVKLTAPVLLPSLAVGLIIAMFQAATQINEATLTFVPKVIVIGI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L+I P + + ++ I +
Sbjct: 61 VLMIMGPGMLQMFLDYFQGLIRDIPHLI 88
>gi|296157443|ref|ZP_06840278.1| flagellar biosynthetic protein FliQ [Burkholderia sp. Ch1-1]
gi|295892215|gb|EFG71998.1| flagellar biosynthetic protein FliQ [Burkholderia sp. Ch1-1]
Length = 89
Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 58/88 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN+ V+ +A AM+ L +AP+L A+ +G++++ QA TQI E TL+F+PK++A+ +
Sbjct: 1 MNQESVMTLAHQAMYVGLLLAAPLLLVALVVGLVVSLFQAATQINESTLSFIPKLLAIAV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
T++I+ P++ I ++ L+ I + +
Sbjct: 61 TMVIAGPWMLTTILDYLRQTLTNIPTLV 88
>gi|238751770|ref|ZP_04613258.1| Flagellar biosynthetic protein FliQ [Yersinia rohdei ATCC 43380]
gi|238710041|gb|EEQ02271.1| Flagellar biosynthetic protein FliQ [Yersinia rohdei ATCC 43380]
Length = 89
Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 57/88 (64%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + AM L+ +AP+L +A+ G++++ LQA TQI E+TL+F+PKI+AVF
Sbjct: 1 MTPESVMALGVEAMKIALALAAPLLLAALISGLIVSLLQAATQINEMTLSFIPKILAVFT 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
T++I+ P++ I ++ + + + + +
Sbjct: 61 TMVIAGPWMLNLILDYMRTLFTSLPTLI 88
>gi|225619291|ref|YP_002720517.1| flagellar biosynthetic protein FliQ [Brachyspira hyodysenteriae
WA1]
gi|296125239|ref|YP_003632491.1| flagellar biosynthetic protein FliQ [Brachyspira murdochii DSM
12563]
gi|225214110|gb|ACN82844.1| flagellar biosynthetic protein (fliQ) [Brachyspira hyodysenteriae
WA1]
gi|296017055|gb|ADG70292.1| flagellar biosynthetic protein FliQ [Brachyspira murdochii DSM
12563]
Length = 89
Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 53/86 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M++ ++ + + +W + SAPVL ++ +G++I+ LQA T IQE TLTFVPK+IA+
Sbjct: 1 MSDTSIIVLVQETLWVFMLLSAPVLGVSIIVGLIISILQATTSIQEQTLTFVPKMIAMLA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
+ + A ++ S+F + S + S
Sbjct: 61 VIYMLASWMLNYTSAFTVRLFSILPS 86
>gi|90021816|ref|YP_527643.1| flagellar hook-associated protein [Saccharophagus degradans 2-40]
gi|89951416|gb|ABD81431.1| flagellar biosynthetic protein FliQ [Saccharophagus degradans
2-40]
Length = 89
Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 49/88 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M L + A + + A ++ ++ +G++++ QA TQI E TL+F+P+++
Sbjct: 1 MTPEIALSLFGEAFYLTMLMVAVIVGPSLLVGLVVSTFQAATQINEQTLSFLPRLMMTIA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
T++++ P++ G IS T ++ RI +
Sbjct: 61 TIMVTGPWLLGSISDLFTSLVMRIPELI 88
>gi|23099027|ref|NP_692493.1| flagellar biosynthesis protein FliQ [Oceanobacillus iheyensis
HTE831]
gi|22777255|dbj|BAC13528.1| flagellar protein required for flagellar formation
[Oceanobacillus iheyensis HTE831]
Length = 89
Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 50/85 (58%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ VL +A + TIL + P+L A+ +G+L++ QA TQIQE TL F+PKIIAV +
Sbjct: 1 MSSELVLTLAEQGVVTILLITVPLLLLALGVGLLVSIFQATTQIQEQTLAFIPKIIAVLV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
L+ P++ I F + + +
Sbjct: 61 GLVFFGPWMLTTIVEFTSNLYQNLN 85
>gi|219685768|ref|ZP_03540579.1| flagellar biosynthetic protein FliQ [Borrelia garinii Far04]
gi|219672707|gb|EED29735.1| flagellar biosynthetic protein FliQ [Borrelia garinii Far04]
Length = 87
Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 57/86 (66%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ +L + R ++ I+ SAP+L A+ +G+LI+ QA+T IQ+ L+F+PKII + +
Sbjct: 1 MSAGHILYLIRISIENIIILSAPMLIIALIVGLLISIFQAITSIQDQALSFIPKIIVILL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
T++I P+I ++ F ++ +++Q+
Sbjct: 61 TIVIFGPWILNKLMQFTYMIFNQLQN 86
>gi|310816829|ref|YP_003964793.1| flagellar biosynthetic protein FliQ [Ketogulonicigenium vulgare
Y25]
gi|308755564|gb|ADO43493.1| flagellar biosynthetic protein FliQ [Ketogulonicigenium vulgare
Y25]
Length = 89
Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 49/81 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
++EA + + RA +W S P+L A+ G+++ QALT +QE+TLTFVPK+ A+ +
Sbjct: 2 LSEAQIYDTLRAGLWAAFLMSTPILVVALVAGLIVGLFQALTSVQEMTLTFVPKLAAIVV 61
Query: 61 TLIISAPFIGGQISSFVTLVL 81
++ F+ ++++ VL
Sbjct: 62 VFWLTMGFMTRTLTAYFHGVL 82
>gi|260431750|ref|ZP_05785721.1| flagellar biosynthetic protein FliQ [Silicibacter
lacuscaerulensis ITI-1157]
gi|260415578|gb|EEX08837.1| flagellar biosynthetic protein FliQ [Silicibacter
lacuscaerulensis ITI-1157]
Length = 90
Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 45/79 (56%)
Query: 3 EADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITL 62
E +I R A+W + +S P+L A+ G+ + QALT IQE+TLTFVPK++ + I
Sbjct: 4 EGLYFDIVRQALWVAVITSVPILAVALVTGLAVGLFQALTSIQEMTLTFVPKLVCIVIAF 63
Query: 63 IISAPFIGGQISSFVTLVL 81
+S F+ + +F L
Sbjct: 64 WMSMGFMTQALVTFFAETL 82
>gi|91785623|ref|YP_560829.1| flagellar biosynthesis protein FliQ [Burkholderia xenovorans
LB400]
gi|187925751|ref|YP_001897393.1| flagellar biosynthesis protein FliQ [Burkholderia phytofirmans
PsJN]
gi|91689577|gb|ABE32777.1| Flagellar biosynthesis protein FliQ [Burkholderia xenovorans
LB400]
gi|187716945|gb|ACD18169.1| flagellar biosynthetic protein FliQ [Burkholderia phytofirmans
PsJN]
Length = 89
Score = 54.9 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 58/88 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN+ V+ +A AM+ L +AP+L A+ +G++++ QA TQI E TL+F+PK++A+ +
Sbjct: 1 MNQESVMTLAHQAMYVGLLLAAPLLLVALVVGLVVSLFQAATQINESTLSFIPKLLAIAV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
T++I+ P++ + ++ L+ I + +
Sbjct: 61 TMVIAGPWMLTTMLDYLRQTLTNIPTLV 88
>gi|330812429|ref|YP_004356891.1| type III secretion protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|51587295|emb|CAE53676.1| putative HrcS [Pseudomonas fluorescens bv. I]
gi|312597802|gb|ADQ89917.1| RscS [Pseudomonas fluorescens]
gi|315140169|gb|ADT81059.1| RscS [Pseudomonas fluorescens]
gi|315140173|gb|ADT81062.1| RscS [Pseudomonas fluorescens]
gi|315140177|gb|ADT81065.1| RscS [Pseudomonas fluorescens]
gi|315140181|gb|ADT81068.1| RscS [Pseudomonas fluorescens]
gi|315140185|gb|ADT81071.1| RscS [Pseudomonas fluorescens]
gi|315140189|gb|ADT81074.1| RscS [Pseudomonas fluorescens]
gi|315140197|gb|ADT81080.1| RscS [Pseudomonas fluorescens]
gi|315140201|gb|ADT81083.1| RscS [Pseudomonas fluorescens]
gi|315140205|gb|ADT81086.1| RscS [Pseudomonas fluorescens]
gi|315140209|gb|ADT81089.1| RscS [Pseudomonas fluorescens]
gi|315140213|gb|ADT81092.1| RscS [Pseudomonas fluorescens]
gi|315140217|gb|ADT81095.1| RscS [Pseudomonas fluorescens]
gi|315140221|gb|ADT81098.1| RscS [Pseudomonas fluorescens]
gi|315140225|gb|ADT81101.1| RscS [Pseudomonas fluorescens]
gi|315140229|gb|ADT81104.1| RscS [Pseudomonas fluorescens]
gi|315140233|gb|ADT81107.1| RscS [Pseudomonas fluorescens]
gi|315140241|gb|ADT81113.1| RscS [Pseudomonas fluorescens]
gi|315140245|gb|ADT81116.1| RscS [Pseudomonas fluorescens]
gi|327380537|gb|AEA71887.1| putative type III secretion protein [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
Length = 84
Score = 54.9 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 48/82 (58%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
D L + + M ++ SAP L A+ +G+L + +QAL QIQ+ TL F K++AV +TL++
Sbjct: 2 DALTLFKEGMLLVVLLSAPPLIVAVIVGVLTSLVQALMQIQDQTLPFGIKLVAVGLTLLV 61
Query: 65 SAPFIGGQISSFVTLVLSRIQS 86
+ +IG ++ + + +
Sbjct: 62 TGRWIGVELLGLLRRAFEMMAN 83
>gi|167840283|ref|ZP_02466967.1| type III secretion inner membrane protein SctS [Burkholderia
thailandensis MSMB43]
Length = 87
Score = 54.9 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 47/82 (57%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M D++ + M L S P++ A G+ I+FLQA+T +QE ++++ K+IAV +
Sbjct: 1 MEIDDLIRLTSQGMMLCLYISLPIVLVAAASGLAISFLQAITSLQEQSISYGVKLIAVTV 60
Query: 61 TLIISAPFIGGQISSFVTLVLS 82
T+ I+ P+ +I F +L+
Sbjct: 61 TVAIAGPWAAAEILHFAQQLLT 82
>gi|332524235|ref|ZP_08400461.1| flagellar biosynthetic protein FliQ [Rubrivivax benzoatilyticus
JA2]
gi|332107570|gb|EGJ08794.1| flagellar biosynthetic protein FliQ [Rubrivivax benzoatilyticus
JA2]
Length = 81
Score = 54.9 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 46/78 (58%)
Query: 9 IARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPF 68
+ + ++ +L SAP+L M +G++++ LQA TQI E TL+FVPKI+A L + P+
Sbjct: 1 MGQQGLYLLLLVSAPILLVVMAIGLIVSVLQAATQINEATLSFVPKIVAAVAVLGFAGPW 60
Query: 69 IGGQISSFVTLVLSRIQS 86
+ + ++ L I S
Sbjct: 61 MITTLVEYLQRTLQAIPS 78
>gi|315140193|gb|ADT81077.1| RscS [Pseudomonas fluorescens]
Length = 84
Score = 54.9 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 47/82 (57%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
D L + + ++ SAP L A+ +G+L + +QAL QIQ+ TL F K++AV +TL++
Sbjct: 2 DALTLFKEGTLLVVLLSAPPLIVAVIVGVLTSLVQALMQIQDQTLPFGIKLVAVGLTLLV 61
Query: 65 SAPFIGGQISSFVTLVLSRIQS 86
+ +IG ++ + + +
Sbjct: 62 TGRWIGVELLGLLRRAFEMMAN 83
>gi|116514992|ref|YP_802621.1| hypothetical protein BCc_049 [Buchnera aphidicola str. Cc (Cinara
cedri)]
gi|116256846|gb|ABJ90528.1| type III protein export, membrane component [Buchnera aphidicola
str. Cc (Cinara cedri)]
Length = 88
Score = 54.9 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 53/86 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN+ ++ + + ++ + S P L + +GILI+FLQ++TQI E TL+F+PKI+++F+
Sbjct: 1 MNQEFLITLFQDSIKFVFLISVPCLIPILLIGILISFLQSITQIHEQTLSFIPKILSIFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
+LI P++ ++ + I +
Sbjct: 61 SLIFFGPWMLQLTIQYIRNIFYIIST 86
>gi|209522297|ref|ZP_03270924.1| flagellar biosynthetic protein FliQ [Burkholderia sp. H160]
gi|209497273|gb|EDZ97501.1| flagellar biosynthetic protein FliQ [Burkholderia sp. H160]
Length = 89
Score = 54.9 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 56/88 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ +A AM+ L +AP+L A+ +G+L++ QA TQI E TL+F+PK++A+ +
Sbjct: 1 MTPESVMTLAHQAMYVGLVLAAPLLLVALVVGLLVSLFQAATQINETTLSFIPKLLAIAV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
TL+I+ P++ + ++ ++ I + +
Sbjct: 61 TLVIAGPWMLTTMLDYLRHTIASIPTLV 88
>gi|57238686|ref|YP_179817.1| flagellar biosynthesis protein FliQ [Campylobacter jejuni RM1221]
gi|86149340|ref|ZP_01067571.1| flagellar biosynthetic protein FliQ [Campylobacter jejuni subsp.
jejuni CF93-6]
gi|86152319|ref|ZP_01070530.1| flagellar biosynthetic protein FliQ [Campylobacter jejuni subsp.
jejuni 260.94]
gi|86152894|ref|ZP_01071099.1| flagellar biosynthetic protein FliQ [Campylobacter jejuni subsp.
jejuni HB93-13]
gi|88596569|ref|ZP_01099806.1| flagellar biosynthetic protein FliQ [Campylobacter jejuni subsp.
jejuni 84-25]
gi|121612222|ref|YP_001001318.1| flagellar biosynthesis protein FliQ [Campylobacter jejuni subsp.
jejuni 81-176]
gi|148925811|ref|ZP_01809499.1| flagellar biosynthetic protein [Campylobacter jejuni subsp.
jejuni CG8486]
gi|157415894|ref|YP_001483150.1| flagellar biosynthesis protein FliQ [Campylobacter jejuni subsp.
jejuni 81116]
gi|167006211|ref|ZP_02271969.1| flagellar biosynthetic protein [Campylobacter jejuni subsp.
jejuni 81-176]
gi|205355693|ref|ZP_03222463.1| flagellar biosynthetic protein [Campylobacter jejuni subsp.
jejuni CG8421]
gi|218563263|ref|YP_002345043.1| flagellar biosynthesis protein FliQ [Campylobacter jejuni subsp.
jejuni NCTC 11168]
gi|283957060|ref|ZP_06374532.1| flagellar biosynthetic protein [Campylobacter jejuni subsp.
jejuni 1336]
gi|57167490|gb|AAW36269.1| flagellar biosynthetic protein FliQ [Campylobacter jejuni RM1221]
gi|62754294|gb|AAX99157.1| FliQ [Campylobacter jejuni subsp. jejuni 81-176]
gi|85840122|gb|EAQ57380.1| flagellar biosynthetic protein FliQ [Campylobacter jejuni subsp.
jejuni CF93-6]
gi|85840808|gb|EAQ58059.1| flagellar biosynthetic protein FliQ [Campylobacter jejuni subsp.
jejuni 260.94]
gi|85843779|gb|EAQ60989.1| flagellar biosynthetic protein FliQ [Campylobacter jejuni subsp.
jejuni HB93-13]
gi|87249847|gb|EAQ72806.1| flagellar biosynthetic protein FliQ [Campylobacter jejuni subsp.
jejuni 81-176]
gi|88191410|gb|EAQ95382.1| flagellar biosynthetic protein FliQ [Campylobacter jejuni subsp.
jejuni 84-25]
gi|112360970|emb|CAL35771.1| flagellar biosynthetic protein [Campylobacter jejuni subsp.
jejuni NCTC 11168]
gi|145845821|gb|EDK22912.1| flagellar biosynthetic protein [Campylobacter jejuni subsp.
jejuni CG8486]
gi|157386858|gb|ABV53173.1| flagellar biosynthetic protein [Campylobacter jejuni subsp.
jejuni 81116]
gi|205346470|gb|EDZ33103.1| flagellar biosynthetic protein [Campylobacter jejuni subsp.
jejuni CG8421]
gi|283791561|gb|EFC30358.1| flagellar biosynthetic protein [Campylobacter jejuni subsp.
jejuni 1336]
gi|284926868|gb|ADC29220.1| flagellar biosynthetic protein [Campylobacter jejuni subsp.
jejuni IA3902]
gi|307748531|gb|ADN91801.1| Flagellar biosynthetic protein FliQ [Campylobacter jejuni subsp.
jejuni M1]
gi|315059125|gb|ADT73454.1| Flagellar biosynthesis protein fliQ [Campylobacter jejuni subsp.
jejuni S3]
gi|315927575|gb|EFV06906.1| flagellar biosynthetic protein FliQ [Campylobacter jejuni subsp.
jejuni DFVF1099]
gi|315930885|gb|EFV09871.1| flagellar biosynthetic protein FliQ [Campylobacter jejuni subsp.
jejuni 305]
gi|315931361|gb|EFV10330.1| flagellar biosynthetic protein FliQ [Campylobacter jejuni subsp.
jejuni 327]
Length = 89
Score = 54.9 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 51/88 (57%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E+ ++ + L S P+L + + G++I+ QA TQI E+TL+FVPKII V +
Sbjct: 1 MDESTLVALGVQTFKITLLLSLPMLLAGLIAGLVISIFQATTQINEMTLSFVPKIILVVV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
LI P++ + F +L++I + +
Sbjct: 61 ILIFLMPWMTTTMIDFTENILNQIPTFI 88
>gi|54308126|ref|YP_129146.1| flagellar biosynthesis protein FliQ [Photobacterium profundum
SS9]
gi|46912552|emb|CAG19344.1| Putative polar flagellar assembly protein, FliQ [Photobacterium
profundum SS9]
Length = 89
Score = 54.9 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 44/88 (50%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +EI + A+ +L ++ + +G+++A QA T I E TL+F+P++I +
Sbjct: 1 MTPEAFVEIFQEALLMVLIMVCAIVVPGLLIGLVVAVFQAATSINEQTLSFLPRLIVTLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L+ + G + + ++ RI L
Sbjct: 61 ALMFFGHMMTGMLMDYFFRIIDRIPQLL 88
>gi|269139498|ref|YP_003296199.1| flagellar biosynthesis pathway, component FliQ [Edwardsiella
tarda EIB202]
gi|267985159|gb|ACY84988.1| flagellar biosynthesis pathway, component FliQ [Edwardsiella
tarda EIB202]
gi|304559387|gb|ADM42051.1| Flagellar biosynthesis protein FliQ [Edwardsiella tarda FL6-60]
Length = 89
Score = 54.9 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 56/88 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + AM L+ + P+L +A+ G+LI+ LQA TQI E+TL+F+PKI+AVF
Sbjct: 1 MTPESVMALGYQAMKVGLALATPLLLAALISGLLISLLQAATQINEMTLSFIPKILAVFA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
TL+++ P++ + ++ + S + + +
Sbjct: 61 TLVVAGPWMLSLLLDYMRTLFSSLPTLI 88
>gi|13449101|ref|NP_085317.1| Type III secretion protein [Shigella flexneri 5a]
gi|31983792|ref|NP_858287.1| Spa9, component of the Mxi-Spa secretion machinery [Shigella
flexneri 2a str. 301]
gi|157042766|ref|YP_001449233.1| Spa9 [Shigella sonnei Ss046]
gi|60415915|sp|P0A1M4|SPAQ_SHIFL RecName: Full=Surface presentation of antigens protein SpaQ;
AltName: Full=Protein spa9
gi|60415916|sp|P0A1M5|SPAQ_SHISO RecName: Full=Surface presentation of antigens protein SpaQ;
AltName: Full=Protein spa9
gi|13310649|gb|AAK18473.1|AF348706_162 Type III secretion protein [Shigella flexneri 5a]
gi|303894|dbj|BAA02830.1| spa9 [Shigella flexneri]
gi|12329098|emb|CAC05829.1| Spa9, component of the Mxi-Spa secretion machinery [Shigella
flexneri]
gi|18462784|gb|AAL72556.1| Spa9, component of the Mxi-Spa secretion machinery [Shigella
flexneri 2a str. 301]
gi|154152389|gb|ABS59873.1| Spa9, component of the Mxi-Spa secretion machinery [Shigella
sonnei Ss046]
gi|281603909|gb|ADA76892.1| Spa9, component of the Mxi-Spa secretion machinery [Shigella
flexneri 2002017]
Length = 86
Score = 54.9 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 49/85 (57%)
Query: 4 ADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLI 63
+D++ + A++ IL S + A +G+ I LQ +TQ+QE TL F K+I V I+L+
Sbjct: 2 SDIVYMGNKALYLILIFSLWPVGIATVIGLSIGLLQTVTQLQEQTLPFGIKLIGVSISLL 61
Query: 64 ISAPFIGGQISSFVTLVLSRIQSSL 88
+ + + G + SF ++ I+S +
Sbjct: 62 LLSGWYGEVLLSFCHEIMFLIKSGV 86
>gi|307731353|ref|YP_003908577.1| flagellar biosynthetic protein FliQ [Burkholderia sp. CCGE1003]
gi|323527703|ref|YP_004229856.1| flagellar biosynthetic protein FliQ [Burkholderia sp. CCGE1001]
gi|307585888|gb|ADN59286.1| flagellar biosynthetic protein FliQ [Burkholderia sp. CCGE1003]
gi|323384705|gb|ADX56796.1| flagellar biosynthetic protein FliQ [Burkholderia sp. CCGE1001]
Length = 89
Score = 54.9 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 57/88 (64%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN V+ +A AM+ L +AP+L A+ +G++++ QA TQI E TL+F+PK++A+ +
Sbjct: 1 MNSESVMTLAHQAMYVGLLLAAPLLLVALVVGLVVSLFQAATQINESTLSFIPKLLAIAV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
T++I+ P++ + ++ L+ I + +
Sbjct: 61 TMVIAGPWMLTTMLDYLRQTLTNIPTLV 88
>gi|145297438|ref|YP_001140279.1| lateral flagellar biosynthetic protein, LfiQ [Aeromonas
salmonicida subsp. salmonicida A449]
gi|142850210|gb|ABO88531.1| lateral flagellar biosynthetic protein, LfiQ [Aeromonas
salmonicida subsp. salmonicida A449]
Length = 89
Score = 54.9 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 48/88 (54%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + + A+ ++ + ++ ++ +G++++ QA TQIQE TL+F+P+ + +
Sbjct: 1 MTPEQSVALIGGAVNLVVVMVSVLIVPSLIVGLVVSVFQAATQIQEQTLSFLPRFLVTLM 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
TLI + ++ QI++ + +I +
Sbjct: 61 TLIFTGNWLLSQITTLFHDLFLKIPGLI 88
>gi|194443974|ref|YP_002041245.1| flagellar biosynthesis protein FliQ [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|205360268|ref|ZP_02681706.2| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|194402637|gb|ACF62859.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|205351044|gb|EDZ37675.1| flagellar biosynthetic protein FliQ [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
Length = 89
Score = 54.9 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 33/85 (38%), Positives = 54/85 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + AM L+ +AP+L A+ G++I+ LQA TQI E+TL+F+PKI+AVFI
Sbjct: 1 MTPESVMMMGTEAMKVALALAAPLLLVALITGLIISILQAATQINEMTLSFIPKIVAVFI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
+II+ P++ + +V + S +
Sbjct: 61 AIIIAGPWMLNLLLDYVRTLFSNLP 85
>gi|255321318|ref|ZP_05362480.1| flagellar biosynthetic protein FliQ [Campylobacter showae RM3277]
gi|255301637|gb|EET80892.1| flagellar biosynthetic protein FliQ [Campylobacter showae RM3277]
Length = 88
Score = 54.9 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 49/86 (56%)
Query: 3 EADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITL 62
++ ++E+ L S P+L + + G++I+ QA TQI E+TL+FVPKII V + +
Sbjct: 2 QSTLIELGIETFKIALYLSFPMLLAGLSAGLIISIFQATTQINEMTLSFVPKIILVVVVI 61
Query: 63 IISAPFIGGQISSFVTLVLSRIQSSL 88
I P++ + F T ++ I + +
Sbjct: 62 IFLMPWMVSMMVDFTTRMIEFIPNFV 87
>gi|227112530|ref|ZP_03826186.1| flagellar biosynthesis protein FliQ [Pectobacterium carotovorum
subsp. brasiliensis PBR1692]
gi|227328347|ref|ZP_03832371.1| flagellar biosynthesis protein FliQ [Pectobacterium carotovorum
subsp. carotovorum WPP14]
gi|462611|sp|P34201|FLIQ_PECCC RecName: Full=Flagellar biosynthetic protein FliQ; AltName:
Full=Flagellar biosynthetic protein MopD
gi|296056|emb|CAA51477.1| mopD [Pectobacterium carotovorum]
Length = 89
Score = 54.9 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 54/86 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + AM L+ +AP L +A+ G+LI+ LQA TQI E+TL+F+PKI+ VF
Sbjct: 1 MTPESVMALGYEAMKVALALAAPPLMAALLSGLLISLLQAATQINEMTLSFIPKILTVFF 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
TL+I+ P++ + ++ + ++ +
Sbjct: 61 TLVIAGPWMLNLMLDYMRTLFGQLPN 86
>gi|294679033|ref|YP_003579648.1| flagellar biosynthetic protein FliQ [Rhodobacter capsulatus SB
1003]
gi|294477853|gb|ADE87241.1| flagellar biosynthetic protein FliQ [Rhodobacter capsulatus SB
1003]
Length = 88
Score = 54.9 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 43/78 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + + R +W + SAP+L A+ G+ I QALT +QE+TLTFVPK+ A+ +
Sbjct: 1 MPDLVFFDAMREGLWIAVMISAPMLVVALVAGVAIGLFQALTSVQEMTLTFVPKVGAMLV 60
Query: 61 TLIISAPFIGGQISSFVT 78
+S F+ + F T
Sbjct: 61 VYWVSMSFMSETLVDFFT 78
>gi|260775666|ref|ZP_05884562.1| type III secretion protein HrpO [Vibrio coralliilyticus ATCC
BAA-450]
gi|260608082|gb|EEX34251.1| type III secretion protein HrpO [Vibrio coralliilyticus ATCC
BAA-450]
Length = 85
Score = 54.9 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 47/77 (61%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
D+L + ++W ++ S P L A +G+L++ +QAL Q+Q+ TL FV K+I+V +TL++
Sbjct: 2 DILTVFAQSLWLVVVLSLPCLIVASGVGVLVSLIQALMQLQDQTLPFVIKLISVGLTLVM 61
Query: 65 SAPFIGGQISSFVTLVL 81
+ ++ ++ +
Sbjct: 62 TGRWMSVEVIELTEHIF 78
>gi|157373225|ref|YP_001471825.1| export protein FliQ [Shewanella sediminis HAW-EB3]
gi|157315599|gb|ABV34697.1| export protein FliQ, family 3 [Shewanella sediminis HAW-EB3]
Length = 89
Score = 54.9 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 20/86 (23%), Positives = 46/86 (53%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M ++ I A++ +++ ++ ++ +G++IA QA TQ+ E TL+F+P+++ +
Sbjct: 1 MEVNELTSIFSDAIYLVVAMVGVLVVPSLLVGLIIAVFQAATQVNEQTLSFLPRLVLTLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
++ S ++ QIS + I
Sbjct: 61 MVLFSGQWLLQQISDLFDRLFMNIPH 86
>gi|285018169|ref|YP_003375880.1| flagellar biosynthetic protein fliq [Xanthomonas albilineans GPE
PC73]
gi|283473387|emb|CBA15892.1| probable flagellar biosynthetic protein fliq [Xanthomonas
albilineans]
Length = 89
Score = 54.9 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 45/88 (51%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ L R + T+L + P+L + + +G++I QA TQ+ E T+ F+ K+IA+
Sbjct: 1 MSPELALTELRGGLVTVLWVAGPLLLAMLVVGVVIGVFQAATQLNEPTIAFIAKVIALTA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L + + + + TL+ RI +
Sbjct: 61 MLFATGSMLLAHLVEYTTLLFQRIPHLI 88
>gi|238796942|ref|ZP_04640446.1| Flagellar biosynthetic protein fliQ [Yersinia mollaretii ATCC
43969]
gi|238719202|gb|EEQ11014.1| Flagellar biosynthetic protein fliQ [Yersinia mollaretii ATCC
43969]
Length = 83
Score = 54.9 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 46/79 (58%)
Query: 7 LEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISA 66
+ + A+ L +AP+LF+A+F G++++ LQA TQI E+TL+F+PKI+ + +
Sbjct: 1 MAMGLQAIKVGLMMAAPLLFAALFTGLIVSILQASTQINEMTLSFIPKILTIIAVGVALG 60
Query: 67 PFIGGQISSFVTLVLSRIQ 85
P++ + + S +
Sbjct: 61 PWMLSVFLDYTRTLYSNLP 79
>gi|159045790|ref|YP_001534584.1| flagellar biosynthetic protein FliQ [Dinoroseobacter shibae DFL
12]
gi|157913550|gb|ABV94983.1| flagellar biosynthetic protein FliQ [Dinoroseobacter shibae DFL
12]
Length = 88
Score = 54.5 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M E + R +W + SAP+L A+ G+++ QALT +QE+TLTFVPK +
Sbjct: 1 MTEIIFFDTLRQGLWVSVLMSAPILTVALVAGVIVGLFQALTSVQEMTLTFVPKAALMLA 60
Query: 61 TLIISAPFIGGQISSFVT 78
+S F+ ++ F
Sbjct: 61 VFWVSMSFMTETLTDFFQ 78
>gi|224534382|ref|ZP_03674960.1| flagellar biosynthetic protein FliQ [Borrelia spielmanii A14S]
gi|224514484|gb|EEF84800.1| flagellar biosynthetic protein FliQ [Borrelia spielmanii A14S]
Length = 87
Score = 54.5 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 57/86 (66%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +L + R ++ I+ S+P+L A+ +G+LI+ QA+T IQ+ TL+F+PKII + +
Sbjct: 1 MTAGHILYLIRISIENIIILSSPMLIIALIVGLLISIFQAITSIQDQTLSFIPKIIVILL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
T++I P+I ++ F ++ +++Q+
Sbjct: 61 TVVIFGPWILNKLMQFTYMIFNQLQN 86
>gi|83594155|ref|YP_427907.1| flagellar biosynthesis protein FliQ [Rhodospirillum rubrum ATCC
11170]
gi|83577069|gb|ABC23620.1| Flagellar biosynthesis protein FliQ [Rhodospirillum rubrum ATCC
11170]
Length = 84
Score = 54.5 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 34/78 (43%), Positives = 55/78 (70%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
++++AR A+ T+L SAP L + M +G++IA Q LTQIQE+TL FVPKI+ VF +L++
Sbjct: 1 MIMDVARDAILTMLIISAPPLLAGMVIGLIIALFQTLTQIQEMTLVFVPKIVVVFASLLL 60
Query: 65 SAPFIGGQISSFVTLVLS 82
+ P++ Q S F+ ++
Sbjct: 61 TLPWMVRQASEFMERLMD 78
>gi|157042764|ref|YP_001449235.1| Spa9 [Shigella dysenteriae Sd197]
gi|187734394|ref|YP_001883217.1| Spa9 [Shigella boydii CDC 3083-94]
gi|304905|gb|AAA72012.1| InvX [Escherichia coli HB101]
gi|32307047|gb|AAP79017.1| Spa9 [Shigella flexneri]
gi|154152387|gb|ABS59871.1| Spa9 [Shigella dysenteriae Sd197]
gi|187426890|gb|ACD06165.1| Spa9 [Shigella boydii CDC 3083-94]
Length = 86
Score = 54.5 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 49/85 (57%)
Query: 4 ADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLI 63
+D++ + A++ IL S + A +G+ I LQ +TQ+QE TL F K+I V I+L+
Sbjct: 2 SDIVYMGNKALYLILIFSLWPVGIATVIGLTIGLLQTVTQLQEQTLPFGIKLIGVSISLL 61
Query: 64 ISAPFIGGQISSFVTLVLSRIQSSL 88
+ + + G + SF ++ I+S +
Sbjct: 62 LLSGWYGEVLLSFCHEIMFLIKSGV 86
>gi|319795613|ref|YP_004157253.1| type III secretion protein, hrpo family [Variovorax paradoxus
EPS]
gi|315598076|gb|ADU39142.1| type III secretion protein, HrpO family [Variovorax paradoxus
EPS]
Length = 88
Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 45/82 (54%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M ++L+I R + +L S PV+ A +++A LQA+TQ+Q+ + ++IAV +
Sbjct: 1 MTPQNILDITREGLLLVLWISLPVVAVATLTSLVVAVLQAVTQVQDQNIGQSIRMIAVMV 60
Query: 61 TLIISAPFIGGQISSFVTLVLS 82
+I++A ++G + F
Sbjct: 61 AIIVTAGWLGRDMIRFAERAFQ 82
>gi|260772333|ref|ZP_05881249.1| flagellar biosynthesis protein FliQ [Vibrio metschnikovii CIP
69.14]
gi|260611472|gb|EEX36675.1| flagellar biosynthesis protein FliQ [Vibrio metschnikovii CIP
69.14]
Length = 89
Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 48/88 (54%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +E+ R A+W +L ++ ++ +G+++A QA T I E TL+F+P++I +
Sbjct: 1 MTPELFVELFREALWLVLIMVCAIIVPSLIIGLVVAVFQAATSINEQTLSFLPRLIVTLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L+I A ++ + F ++ R+ L
Sbjct: 61 ALMIFAHWMTQMLMEFFFAMIERLPQVL 88
>gi|111115099|ref|YP_709717.1| flagellar biosynthesis protein [Borrelia afzelii PKo]
gi|216264085|ref|ZP_03436079.1| flagellar biosynthetic protein FliQ [Borrelia afzelii ACA-1]
gi|110890373|gb|ABH01541.1| flagellar biosynthesis protein [Borrelia afzelii PKo]
gi|215980129|gb|EEC20951.1| flagellar biosynthetic protein FliQ [Borrelia afzelii ACA-1]
Length = 87
Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 57/86 (66%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +L + R ++ I+ SAP+L A+ +G+LI+ QA+T IQ+ TL+F+PKII + +
Sbjct: 1 MTAGHILYLIRISIENIIILSAPMLIIALIVGLLISIFQAITSIQDQTLSFIPKIIVILL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
T++I P+I ++ F ++ +++Q+
Sbjct: 61 TVVIFGPWILNKLMQFTYMIFNQLQN 86
>gi|254474996|ref|ZP_05088382.1| flagellar biosynthetic protein FliQ [Ruegeria sp. R11]
gi|214029239|gb|EEB70074.1| flagellar biosynthetic protein FliQ [Ruegeria sp. R11]
Length = 90
Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 46/78 (58%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
++E + R A+WT + S P+L A+ +G+ I QALT +QE+TLTFVPK+ A+ I
Sbjct: 2 LSEGIFYDTLRQALWTSVIMSTPILLVALVVGLAIGLFQALTSVQEMTLTFVPKVTAIVI 61
Query: 61 TLIISAPFIGGQISSFVT 78
++ F+ + +F
Sbjct: 62 VFWMTMGFMTQSLVAFFE 79
>gi|218699490|ref|YP_002407119.1| flagellar biosynthesis protein FliQ [Escherichia coli IAI39]
gi|218369476|emb|CAR17241.1| flagellar biosynthesis protein [Escherichia coli IAI39]
Length = 89
Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 53/85 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + AM L+ + P+L A+ G++I+ LQA TQI E+TL+F+PKIIAVFI
Sbjct: 1 MTPESVMMMGTEAMKVALALATPLLLVALVTGLIISILQAATQINEMTLSFIPKIIAVFI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
+II+ P++ + +V + + +
Sbjct: 61 AIIIAGPWMLNLLLDYVRTLFTNLP 85
>gi|153951007|ref|YP_001398955.1| flagellar biosynthesis protein FliQ [Campylobacter jejuni subsp.
doylei 269.97]
gi|152938453|gb|ABS43194.1| flagellar biosynthetic protein FliQ [Campylobacter jejuni subsp.
doylei 269.97]
Length = 89
Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 50/88 (56%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E ++ + L S P+L + + G++I+ QA TQI E+TL+FVPKII V +
Sbjct: 1 MDENTLVALGVQTFKITLLLSLPMLLAGLIAGLVISIFQATTQINEMTLSFVPKIILVVV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
LI P++ + F +L++I + +
Sbjct: 61 ILIFLMPWMTTTMMDFTENILNQIPTFI 88
>gi|260429257|ref|ZP_05783234.1| flagellar biosynthetic protein FliQ [Citreicella sp. SE45]
gi|260419880|gb|EEX13133.1| flagellar biosynthetic protein FliQ [Citreicella sp. SE45]
Length = 89
Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 45/78 (57%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
+ EA + R +W +SAP+L +A+ G+ + QALT IQE+TLTFVPK++A+ +
Sbjct: 2 LTEAIFYDTLRQGLWIATVTSAPILTAALVAGVGVGLFQALTSIQEMTLTFVPKLMAIVV 61
Query: 61 TLIISAPFIGGQISSFVT 78
+S F+ + F
Sbjct: 62 VFWMSMSFMTETLVGFFQ 79
>gi|254459562|ref|ZP_05072978.1| flagellar biosynthetic protein FliQ [Rhodobacterales bacterium
HTCC2083]
gi|206676151|gb|EDZ40638.1| flagellar biosynthetic protein FliQ [Rhodobacteraceae bacterium
HTCC2083]
Length = 88
Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 49/84 (58%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +E R A W I+ ++ P+L A+ +G++I LQA T I E T++FVPK++ V +
Sbjct: 1 MEFDINVESLRGAYWQIIMTAGPILVVALSVGLIIGILQAATSINEATISFVPKLVVVLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
+ + + F+ ++ + ++ +I
Sbjct: 61 AMALLSTFMMREMVDYFAMIFDQI 84
>gi|323491456|ref|ZP_08096640.1| flagellar biosynthesis protein FliQ [Vibrio brasiliensis LMG
20546]
gi|323314325|gb|EGA67405.1| flagellar biosynthesis protein FliQ [Vibrio brasiliensis LMG
20546]
Length = 89
Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 48/88 (54%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +E+ R ++W +L ++ ++ +G+++A QA T I E TL+F+P++I +
Sbjct: 1 MTPEMFVELFRESLWMVLIMVCAIIIPSLLIGLVVAIFQAATSINEQTLSFLPRLIVTLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L++ A ++ + F ++ R+ L
Sbjct: 61 ALMLFAHWMTQMLMEFFFSMIERMPQVL 88
>gi|167841180|ref|ZP_02467864.1| type III secretion apparatus protein EscS [Burkholderia
thailandensis MSMB43]
Length = 89
Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 55/84 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+EA + ++A MW +L S PV+ A +GIL++ +QALTQ+Q+ T+ F+ K++AV +
Sbjct: 1 MSEAVITQLAAQMMWLVLLLSLPVVVVASVVGILVSLVQALTQVQDQTIQFLIKLLAVAV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
TL + ++G + ++ T ++I
Sbjct: 61 TLAATYHWMGDVLINYATQSFNQI 84
>gi|53716434|ref|YP_106202.1| type III secretion inner membrane protein SctS [Burkholderia
mallei ATCC 23344]
gi|53722639|ref|YP_111624.1| type III secretion protein [Burkholderia pseudomallei K96243]
gi|67639122|ref|ZP_00438022.1| type III secretion inner membrane protein SctS [Burkholderia
mallei GB8 horse 4]
gi|76818200|ref|YP_335834.1| type III secretion inner membrane protein SctS [Burkholderia
pseudomallei 1710b]
gi|124381921|ref|YP_001025754.1| type III secretion inner membrane protein SctS [Burkholderia
mallei NCTC 10229]
gi|126444326|ref|YP_001063271.1| HrpO family type III secretion protein [Burkholderia pseudomallei
668]
gi|126446836|ref|YP_001077839.1| type III secretion inner membrane protein SctS [Burkholderia
mallei NCTC 10247]
gi|126456673|ref|YP_001076227.1| HrpO family type III secretion protein [Burkholderia pseudomallei
1106a]
gi|134282171|ref|ZP_01768877.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 305]
gi|167004562|ref|ZP_02270320.1| type III secretion inner membrane protein SctS [Burkholderia
mallei PRL-20]
gi|167724360|ref|ZP_02407596.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei DM98]
gi|167820505|ref|ZP_02452185.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 91]
gi|167828877|ref|ZP_02460348.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 9]
gi|167850340|ref|ZP_02475848.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei B7210]
gi|167898937|ref|ZP_02486338.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 7894]
gi|167907265|ref|ZP_02494470.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei NCTC 13177]
gi|167923470|ref|ZP_02510561.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei BCC215]
gi|226198427|ref|ZP_03793995.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei Pakistan 9]
gi|237509767|ref|ZP_04522482.1| type III secretion inner membrane protein SctS [Burkholderia
pseudomallei MSHR346]
gi|242312858|ref|ZP_04811875.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 1106b]
gi|254176181|ref|ZP_04882839.1| type III secretion inner membrane protein SctS [Burkholderia
mallei ATCC 10399]
gi|254185082|ref|ZP_04891671.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 1655]
gi|254186947|ref|ZP_04893463.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei Pasteur 52237]
gi|254194408|ref|ZP_04900840.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei S13]
gi|254201083|ref|ZP_04907448.1| type III secretion inner membrane protein SctS [Burkholderia
mallei FMH]
gi|254205048|ref|ZP_04911401.1| type III secretion inner membrane protein SctS [Burkholderia
mallei JHU]
gi|254264758|ref|ZP_04955623.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 1710a]
gi|254301372|ref|ZP_04968816.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 406e]
gi|254359169|ref|ZP_04975441.1| type III secretion inner membrane protein SctS [Burkholderia
mallei 2002721280]
gi|52213053|emb|CAH39091.1| putative type III secretion protein [Burkholderia pseudomallei
K96243]
gi|52422404|gb|AAU45974.1| type III secretion inner membrane protein SctS [Burkholderia
mallei ATCC 23344]
gi|76582673|gb|ABA52147.1| type III secretion inner membrane protein SctS [Burkholderia
pseudomallei 1710b]
gi|126223817|gb|ABN87322.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 668]
gi|126230441|gb|ABN93854.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 1106a]
gi|126239690|gb|ABO02802.1| type III secretion inner membrane protein SctS [Burkholderia
mallei NCTC 10247]
gi|134246700|gb|EBA46788.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 305]
gi|147748695|gb|EDK55770.1| type III secretion inner membrane protein SctS [Burkholderia
mallei FMH]
gi|147754634|gb|EDK61698.1| type III secretion inner membrane protein SctS [Burkholderia
mallei JHU]
gi|148028356|gb|EDK86316.1| type III secretion inner membrane protein SctS [Burkholderia
mallei 2002721280]
gi|157811426|gb|EDO88596.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 406e]
gi|157934631|gb|EDO90301.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei Pasteur 52237]
gi|160697223|gb|EDP87193.1| type III secretion inner membrane protein SctS [Burkholderia
mallei ATCC 10399]
gi|169651159|gb|EDS83852.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei S13]
gi|184215674|gb|EDU12655.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 1655]
gi|225929484|gb|EEH25503.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei Pakistan 9]
gi|235001972|gb|EEP51396.1| type III secretion inner membrane protein SctS [Burkholderia
pseudomallei MSHR346]
gi|238519667|gb|EEP83136.1| type III secretion inner membrane protein SctS [Burkholderia
mallei GB8 horse 4]
gi|242136097|gb|EES22500.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 1106b]
gi|243060177|gb|EES42363.1| type III secretion inner membrane protein SctS [Burkholderia
mallei PRL-20]
gi|254215760|gb|EET05145.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 1710a]
gi|261826563|gb|ABM99331.2| type III secretion inner membrane protein SctS [Burkholderia
mallei NCTC 10229]
Length = 87
Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 47/82 (57%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M D++ + M L S PV+ A G+ I+FLQA+T +QE ++++ K++AV +
Sbjct: 1 MEIDDLIRLTSQGMMLCLYISLPVVLVAAASGLAISFLQAITSLQEQSISYGVKLVAVTV 60
Query: 61 TLIISAPFIGGQISSFVTLVLS 82
T+ I+ P+ +I F ++S
Sbjct: 61 TVAIAGPWAAAEILHFAQQLMS 82
>gi|332284031|ref|YP_004415942.1| flagellar biosynthetic protein FliQ [Pusillimonas sp. T7-7]
gi|330427984|gb|AEC19318.1| flagellar biosynthetic protein FliQ [Pusillimonas sp. T7-7]
Length = 89
Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 50/88 (56%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + AM L + P+L + +G++I+ QA TQI E+TL+F+PK++AV
Sbjct: 1 MTSETVMSMTYLAMKVALIMAGPLLLVTLVVGLVISIFQAATQINEMTLSFIPKLLAVGA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L++ P++ + ++ + ++I +
Sbjct: 61 ALVLLGPWLITTMVDYMRTLFTQIPGLV 88
>gi|167566297|ref|ZP_02359213.1| type III secretion protein, HrpO family [Burkholderia
oklahomensis EO147]
gi|167573399|ref|ZP_02366273.1| type III secretion protein, HrpO family [Burkholderia
oklahomensis C6786]
Length = 87
Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 47/82 (57%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M D++ + M L S PV+ A G+ I+FLQA+T +QE ++++ K++AV +
Sbjct: 1 MEIDDLIRLTSQGMMLCLYISLPVVLVAAVSGLAISFLQAITSLQEQSISYGVKLVAVTV 60
Query: 61 TLIISAPFIGGQISSFVTLVLS 82
T+ I+ P+ +I F ++S
Sbjct: 61 TVTIAGPWAAAEILHFAQQLIS 82
>gi|114762162|ref|ZP_01441630.1| flagellar biosynthetic protein FliQ [Pelagibaca bermudensis
HTCC2601]
gi|114545186|gb|EAU48189.1| flagellar biosynthetic protein FliQ [Roseovarius sp. HTCC2601]
Length = 89
Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 44/78 (56%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
++E + R +W +S P+L +A+ G+ + QALT +QE+TLTFVPK++A+ +
Sbjct: 2 LSETIFYDTLRQGLWVATITSVPILTAALLAGVGVGLFQALTSVQEMTLTFVPKLLAIVV 61
Query: 61 TLIISAPFIGGQISSFVT 78
+S F+ + F
Sbjct: 62 VFWMSMSFMSETLVGFFQ 79
>gi|88858097|ref|ZP_01132739.1| flagellar biosynthesis [Pseudoalteromonas tunicata D2]
gi|88819714|gb|EAR29527.1| flagellar biosynthesis [Pseudoalteromonas tunicata D2]
Length = 89
Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 46/85 (54%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + I A++ ++ A ++ ++ +G++++ QA T I E TL+F+P++I
Sbjct: 1 MQPEVFVGILSNALFLVIKLVAAIIVPSLIVGLIVSVFQAATSINEQTLSFLPRLIVTLF 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
LII A ++ ++ F T ++ I
Sbjct: 61 ALIIGAHWLTQELMDFFTGLVMSIP 85
>gi|150019067|ref|YP_001311321.1| export protein FliQ [Clostridium beijerinckii NCIMB 8052]
gi|149905532|gb|ABR36365.1| export protein FliQ, family 3 [Clostridium beijerinckii NCIMB
8052]
Length = 89
Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 45/84 (53%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + + + + + T SAP+L + LG+ I+ +QA TQIQE TLTFVPK+IA I
Sbjct: 1 MTQTMLNAVVKDTIITAAKVSAPILIVVLVLGLAISIIQATTQIQEQTLTFVPKLIAAAI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
I ++ I SF + I
Sbjct: 61 VGIFLGSWMLETIMSFTNRIFDLI 84
>gi|89056686|ref|YP_512137.1| export protein FliQ [Jannaschia sp. CCS1]
gi|88866235|gb|ABD57112.1| flagellar biosynthetic protein FliQ [Jannaschia sp. CCS1]
Length = 88
Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 50/88 (56%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E + R +W + + P+L +A+ GI++ QALT +QE+TLTFVPK+ A+ +
Sbjct: 1 MDEMIFFDTMRQGLWISVVVATPILAAALVSGIVVGLFQALTSVQEMTLTFVPKLAAIVV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+S F+ + S+ T L I + +
Sbjct: 61 VFWVSMGFMSQTLVSYFTDTLVPIIAGM 88
>gi|332159963|ref|YP_004296540.1| type III secretion system protein [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|318607486|emb|CBY28984.1| type III secretion inner membrane protein (YscS,homologous to
flagellar export components) [Yersinia enterocolitica
subsp. palearctica Y11]
gi|325664193|gb|ADZ40837.1| type III secretion system protein [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330862412|emb|CBX72571.1| secretion system apparatus protein ssaS [Yersinia enterocolitica
W22703]
Length = 89
Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 32/86 (37%), Positives = 54/86 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ A V+ +A +W +L S PV+ A +GI+++ LQALTQIQ+ TL F+ K++AV
Sbjct: 1 MSNAIVVHLATQLLWIVLLLSMPVVVVASVVGIVVSLLQALTQIQDQTLQFLIKLLAVSA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
TL+I+ ++G + ++ +I S
Sbjct: 61 TLLITYHWMGSTLLNYTQQTFLQITS 86
>gi|86157130|ref|YP_463915.1| type III secretion protein HrpO [Anaeromyxobacter dehalogenans
2CP-C]
gi|85773641|gb|ABC80478.1| type III secretion protein HrpO [Anaeromyxobacter dehalogenans
2CP-C]
Length = 88
Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 33/86 (38%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ A +L + R A+ +L SAP L +A+ +G++ LQA TQ+QE TL VP+++AV +
Sbjct: 1 MDPA-LLHLGREALLLVLVLSAPPLGAALLVGLVTGVLQAATQVQEQTLAVVPRLVAVVV 59
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
L I+AP+IG + F L+ +
Sbjct: 60 ALAIAAPWIGARAVRFAADCLALVPR 85
>gi|218887502|ref|YP_002436823.1| type III secretion protein, HrpO family [Desulfovibrio vulgaris
str. 'Miyazaki F']
gi|218758456|gb|ACL09355.1| type III secretion protein, HrpO family [Desulfovibrio vulgaris
str. 'Miyazaki F']
Length = 86
Score = 54.1 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 48/81 (59%)
Query: 3 EADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITL 62
E+ + A A++ +L S P + A +GILI+ +QA+TQ+QE TLTF K+IAV +TL
Sbjct: 2 ESMAMTYAVKALYLVLMLSMPPIVVASVIGILISLVQAITQLQEQTLTFGVKLIAVVLTL 61
Query: 63 IISAPFIGGQISSFVTLVLSR 83
+ + G ++ F + R
Sbjct: 62 FLMGGWFGAELLRFADEIFVR 82
>gi|120613020|ref|YP_972698.1| flagellar biosynthetic protein FliQ [Acidovorax citrulli AAC00-1]
gi|120591484|gb|ABM34924.1| flagellar biosynthetic protein FliQ [Acidovorax citrulli AAC00-1]
Length = 89
Score = 54.1 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 47/86 (54%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M VL + R A+ +L S PVL M +G+L++ QA+TQI E TL FVPK+IA +
Sbjct: 1 MTSQMVLTVGRDALTLLLMVSMPVLGVVMVVGLLVSIFQAVTQIHEATLAFVPKLIAAMV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
+ P++ + ++ + I S
Sbjct: 61 VFAVVGPWMITSLVDYIRRTIESIPS 86
>gi|254510132|ref|ZP_05122199.1| flagellar biosynthetic protein FliQ [Rhodobacteraceae bacterium
KLH11]
gi|221533843|gb|EEE36831.1| flagellar biosynthetic protein FliQ [Rhodobacteraceae bacterium
KLH11]
Length = 90
Score = 54.1 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 32/81 (39%), Positives = 49/81 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
++E +I R A+W + +S P+L A+ G+ + QALT +QE+TLTFVPK+IA+ I
Sbjct: 2 LSEGLFYDIVRQALWVAVITSVPILAVALISGLAVGLFQALTSVQEMTLTFVPKLIAIVI 61
Query: 61 TLIISAPFIGGQISSFVTLVL 81
IS F+ + +F T L
Sbjct: 62 VFWISMGFMTQTLVTFFTGTL 82
>gi|187730771|ref|YP_001879728.1| flagellar biosynthesis protein FliQ [Shigella boydii CDC 3083-94]
gi|187427763|gb|ACD07037.1| flagellar biosynthetic protein FliQ [Shigella boydii CDC 3083-94]
Length = 89
Score = 54.1 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 33/85 (38%), Positives = 55/85 (64%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + AM +L+ +AP+L A+ G++I+ LQA TQI E+TL+F+PKIIAVFI
Sbjct: 1 MTPESVMMMGTEAMKVVLALAAPLLLVALVTGLIISILQAATQINEMTLSFIPKIIAVFI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
+II+ P++ + +V + + +
Sbjct: 61 AIIIAGPWMLNLLLDYVRTLFTNLP 85
>gi|15802384|ref|NP_288410.1| flagellar biosynthesis protein FliQ [Escherichia coli O157:H7
EDL933]
gi|15831942|ref|NP_310715.1| flagellar biosynthesis protein FliQ [Escherichia coli O157:H7
str. Sakai]
gi|16129896|ref|NP_416459.1| flagellar biosynthesis protein [Escherichia coli str. K-12
substr. MG1655]
gi|24113324|ref|NP_707834.1| flagellar biosynthesis protein FliQ [Shigella flexneri 2a str.
301]
gi|26248218|ref|NP_754258.1| flagellar biosynthesis protein FliQ [Escherichia coli CFT073]
gi|30063387|ref|NP_837558.1| flagellar biosynthesis protein FliQ [Shigella flexneri 2a str.
2457T]
gi|74312489|ref|YP_310908.1| flagellar biosynthesis protein FliQ [Shigella sonnei Ss046]
gi|82543590|ref|YP_407537.1| flagellar biosynthesis protein FliQ [Shigella boydii Sb227]
gi|89108781|ref|AP_002561.1| flagellar biosynthesis protein [Escherichia coli str. K-12
substr. W3110]
gi|91211167|ref|YP_541153.1| flagellar biosynthesis protein FliQ [Escherichia coli UTI89]
gi|110642055|ref|YP_669785.1| flagellar biosynthesis protein FliQ [Escherichia coli 536]
gi|110805918|ref|YP_689438.1| flagellar biosynthesis protein FliQ [Shigella flexneri 5 str.
8401]
gi|117624089|ref|YP_853002.1| flagellar biosynthesis protein FliQ [Escherichia coli APEC O1]
gi|157157753|ref|YP_001463251.1| flagellar biosynthesis protein FliQ [Escherichia coli E24377A]
gi|157161420|ref|YP_001458738.1| flagellar biosynthesis protein FliQ [Escherichia coli HS]
gi|168751878|ref|ZP_02776900.1| flagellar biosynthetic protein FliQ [Escherichia coli O157:H7
str. EC4113]
gi|168758263|ref|ZP_02783270.1| flagellar biosynthetic protein FliQ [Escherichia coli O157:H7
str. EC4401]
gi|168764425|ref|ZP_02789432.1| flagellar biosynthetic protein FliQ [Escherichia coli O157:H7
str. EC4501]
gi|168771556|ref|ZP_02796563.1| flagellar biosynthetic protein FliQ [Escherichia coli O157:H7
str. EC4486]
gi|168777376|ref|ZP_02802383.1| flagellar biosynthetic protein FliQ [Escherichia coli O157:H7
str. EC4196]
gi|168783346|ref|ZP_02808353.1| flagellar biosynthetic protein FliQ [Escherichia coli O157:H7
str. EC4076]
gi|168790291|ref|ZP_02815298.1| flagellar biosynthetic protein FliQ [Escherichia coli O157:H7
str. EC869]
gi|168802296|ref|ZP_02827303.1| flagellar biosynthetic protein FliQ [Escherichia coli O157:H7
str. EC508]
gi|170019718|ref|YP_001724672.1| flagellar biosynthesis protein FliQ [Escherichia coli ATCC 8739]
gi|170081593|ref|YP_001730913.1| flagellar biosynthesis protein [Escherichia coli str. K-12
substr. DH10B]
gi|170681533|ref|YP_001743296.1| flagellar biosynthesis protein FliQ [Escherichia coli SMS-3-5]
gi|188495287|ref|ZP_03002557.1| flagellar biosynthetic protein FliQ [Escherichia coli 53638]
gi|191168276|ref|ZP_03030069.1| flagellar biosynthetic protein FliQ [Escherichia coli B7A]
gi|191173323|ref|ZP_03034853.1| flagellar biosynthetic protein FliQ [Escherichia coli F11]
gi|193066381|ref|ZP_03047429.1| flagellar biosynthetic protein FliQ [Escherichia coli E22]
gi|193071131|ref|ZP_03052055.1| flagellar biosynthetic protein FliQ [Escherichia coli E110019]
gi|194429935|ref|ZP_03062445.1| flagellar biosynthetic protein FliQ [Escherichia coli B171]
gi|194434954|ref|ZP_03067197.1| flagellar biosynthetic protein FliQ [Shigella dysenteriae 1012]
gi|194439595|ref|ZP_03071668.1| flagellar biosynthetic protein FliQ [Escherichia coli 101-1]
gi|195939255|ref|ZP_03084637.1| flagellar biosynthesis protein FliQ [Escherichia coli O157:H7
str. EC4024]
gi|208810716|ref|ZP_03252592.1| flagellar biosynthetic protein FliQ [Escherichia coli O157:H7
str. EC4206]
gi|208816873|ref|ZP_03257993.1| flagellar biosynthetic protein FliQ [Escherichia coli O157:H7
str. EC4045]
gi|208821456|ref|ZP_03261776.1| flagellar biosynthetic protein FliQ [Escherichia coli O157:H7
str. EC4042]
gi|209398388|ref|YP_002271066.1| flagellar biosynthetic protein FliQ [Escherichia coli O157:H7
str. EC4115]
gi|209919371|ref|YP_002293455.1| flagellar biosynthesis protein FliQ [Escherichia coli SE11]
gi|215487149|ref|YP_002329580.1| flagellar biosynthesis protein FliQ [Escherichia coli O127:H6
str. E2348/69]
gi|217328972|ref|ZP_03445053.1| flagellar biosynthetic protein FliQ [Escherichia coli O157:H7
str. TW14588]
gi|218558806|ref|YP_002391719.1| flagellar biosynthesis protein FliQ [Escherichia coli S88]
gi|218689944|ref|YP_002398156.1| flagellar biosynthesis protein FliQ [Escherichia coli ED1a]
gi|218695554|ref|YP_002403221.1| flagellar biosynthesis protein FliQ [Escherichia coli 55989]
gi|218705442|ref|YP_002412961.1| flagellar biosynthesis protein FliQ [Escherichia coli UMN026]
gi|227885622|ref|ZP_04003427.1| flagellar biosynthesis protein FliQ [Escherichia coli 83972]
gi|237705908|ref|ZP_04536389.1| flagellar biosynthetic protein FliQ [Escherichia sp. 3_2_53FAA]
gi|238901154|ref|YP_002926950.1| flagellar biosynthesis protein [Escherichia coli BW2952]
gi|253773102|ref|YP_003035933.1| flagellar biosynthesis protein FliQ [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254793599|ref|YP_003078436.1| flagellar biosynthesis protein FliQ [Escherichia coli O157:H7
str. TW14359]
gi|256022393|ref|ZP_05436258.1| flagellar biosynthesis protein FliQ [Escherichia sp. 4_1_40B]
gi|260844348|ref|YP_003222126.1| flagellar biosynthesis protein FliQ [Escherichia coli O103:H2
str. 12009]
gi|260855924|ref|YP_003229815.1| flagellar biosynthesis protein FliQ [Escherichia coli O26:H11
str. 11368]
gi|260868542|ref|YP_003234944.1| flagellar biosynthesis protein FliQ [Escherichia coli O111:H-
str. 11128]
gi|261227556|ref|ZP_05941837.1| flagellar biosynthesis protein FliQ [Escherichia coli O157:H7
str. FRIK2000]
gi|261254620|ref|ZP_05947153.1| flagellar biosynthesis protein FliQ [Escherichia coli O157:H7
str. FRIK966]
gi|291283126|ref|YP_003499944.1| hypothetical protein G2583_2400 [Escherichia coli O55:H7 str.
CB9615]
gi|293405432|ref|ZP_06649424.1| fliQ [Escherichia coli FVEC1412]
gi|293410305|ref|ZP_06653881.1| flagellar biosynthetic protein FliQ [Escherichia coli B354]
gi|293415259|ref|ZP_06657902.1| flagellar biosynthetic protein FliQ [Escherichia coli B185]
gi|298381076|ref|ZP_06990675.1| fliQ [Escherichia coli FVEC1302]
gi|300818631|ref|ZP_07098839.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 107-1]
gi|300822281|ref|ZP_07102422.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 119-7]
gi|300899206|ref|ZP_07117482.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 198-1]
gi|300904839|ref|ZP_07122665.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 84-1]
gi|300920168|ref|ZP_07136618.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 115-1]
gi|300923888|ref|ZP_07139903.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 182-1]
gi|300931162|ref|ZP_07146509.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 187-1]
gi|300940404|ref|ZP_07154989.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 21-1]
gi|300951574|ref|ZP_07165407.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 116-1]
gi|300956535|ref|ZP_07168817.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 175-1]
gi|300975536|ref|ZP_07173047.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 45-1]
gi|300994266|ref|ZP_07180818.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 200-1]
gi|301018201|ref|ZP_07182716.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 69-1]
gi|301029406|ref|ZP_07192500.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 196-1]
gi|301050690|ref|ZP_07197551.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 185-1]
gi|301304256|ref|ZP_07210371.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 124-1]
gi|301327736|ref|ZP_07220941.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 78-1]
gi|301644592|ref|ZP_07244581.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 146-1]
gi|306814228|ref|ZP_07448394.1| flagellar biosynthesis protein FliQ [Escherichia coli NC101]
gi|307312465|ref|ZP_07592099.1| flagellar biosynthetic protein FliQ [Escherichia coli W]
gi|309795944|ref|ZP_07690357.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 145-7]
gi|312967146|ref|ZP_07781364.1| flagellar biosynthetic protein FliQ [Escherichia coli 2362-75]
gi|312973834|ref|ZP_07788006.1| flagellar biosynthetic protein FliQ [Escherichia coli 1827-70]
gi|331642570|ref|ZP_08343705.1| flagellar biosynthetic protein FliQ [Escherichia coli H736]
gi|331647543|ref|ZP_08348635.1| flagellar biosynthetic protein FliQ [Escherichia coli M605]
gi|331653361|ref|ZP_08354366.1| flagellar biosynthetic protein FliQ [Escherichia coli M718]
gi|331657995|ref|ZP_08358957.1| flagellar biosynthetic protein FliQ [Escherichia coli TA206]
gi|331663445|ref|ZP_08364355.1| flagellar biosynthetic protein FliQ [Escherichia coli TA143]
gi|331668640|ref|ZP_08369488.1| flagellar biosynthetic protein FliQ [Escherichia coli TA271]
gi|331673462|ref|ZP_08374230.1| flagellar biosynthetic protein FliQ [Escherichia coli TA280]
gi|331677831|ref|ZP_08378506.1| flagellar biosynthetic protein FliQ [Escherichia coli H591]
gi|331683501|ref|ZP_08384102.1| flagellar biosynthetic protein FliQ [Escherichia coli H299]
gi|81175291|sp|P0AC09|FLIQ_ECO57 RecName: Full=Flagellar biosynthetic protein FliQ
gi|81175292|sp|P0AC08|FLIQ_ECOL6 RecName: Full=Flagellar biosynthetic protein FliQ
gi|81175293|sp|P0AC07|FLIQ_ECOLI RecName: Full=Flagellar biosynthetic protein FliQ
gi|81175294|sp|P0AC10|FLIQ_SHIFL RecName: Full=Flagellar biosynthetic protein FliQ
gi|12516056|gb|AAG56964.1|AE005417_6 flagellar biosynthesis [Escherichia coli O157:H7 str. EDL933]
gi|26108622|gb|AAN80825.1|AE016762_78 Flagellar biosynthetic protein fliQ [Escherichia coli CFT073]
gi|347244|gb|AAC36860.1| fliQ [Escherichia coli]
gi|1736615|dbj|BAA15774.1| flagellar biosynthesis protein [Escherichia coli str. K12 substr.
W3110]
gi|1788260|gb|AAC75016.1| flagellar biosynthesis protein [Escherichia coli str. K-12
substr. MG1655]
gi|13362156|dbj|BAB36111.1| putative export protein FliQ [Escherichia coli O157:H7 str.
Sakai]
gi|24052335|gb|AAN43541.1| flagellar biosynthetic protein FliQ [Shigella flexneri 2a str.
301]
gi|30041639|gb|AAP17367.1| flagellar biosynthetic protein FliQ [Shigella flexneri 2a str.
2457T]
gi|73855966|gb|AAZ88673.1| flagellar biosynthesis [Shigella sonnei Ss046]
gi|81245001|gb|ABB65709.1| flagellar biosynthesis [Shigella boydii Sb227]
gi|91072741|gb|ABE07622.1| flagellar biosynthetic protein FliQ [Escherichia coli UTI89]
gi|110343647|gb|ABG69884.1| flagellar biosynthetic protein FliQ [Escherichia coli 536]
gi|110615466|gb|ABF04133.1| flagellar biosynthetic protein FliQ [Shigella flexneri 5 str.
8401]
gi|115513213|gb|ABJ01288.1| flagellar biosynthetic protein FliQ [Escherichia coli APEC O1]
gi|157067100|gb|ABV06355.1| flagellar biosynthetic protein FliQ [Escherichia coli HS]
gi|157079783|gb|ABV19491.1| flagellar biosynthetic protein FliQ [Escherichia coli E24377A]
gi|169754646|gb|ACA77345.1| flagellar biosynthetic protein FliQ [Escherichia coli ATCC 8739]
gi|169889428|gb|ACB03135.1| flagellar biosynthesis protein [Escherichia coli str. K-12
substr. DH10B]
gi|170519251|gb|ACB17429.1| flagellar biosynthetic protein FliQ [Escherichia coli SMS-3-5]
gi|187767409|gb|EDU31253.1| flagellar biosynthetic protein FliQ [Escherichia coli O157:H7
str. EC4196]
gi|188014155|gb|EDU52277.1| flagellar biosynthetic protein FliQ [Escherichia coli O157:H7
str. EC4113]
gi|188490486|gb|EDU65589.1| flagellar biosynthetic protein FliQ [Escherichia coli 53638]
gi|188999287|gb|EDU68273.1| flagellar biosynthetic protein FliQ [Escherichia coli O157:H7
str. EC4076]
gi|189354877|gb|EDU73296.1| flagellar biosynthetic protein FliQ [Escherichia coli O157:H7
str. EC4401]
gi|189359735|gb|EDU78154.1| flagellar biosynthetic protein FliQ [Escherichia coli O157:H7
str. EC4486]
gi|189365574|gb|EDU83990.1| flagellar biosynthetic protein FliQ [Escherichia coli O157:H7
str. EC4501]
gi|189370190|gb|EDU88606.1| flagellar biosynthetic protein FliQ [Escherichia coli O157:H7
str. EC869]
gi|189375705|gb|EDU94121.1| flagellar biosynthetic protein FliQ [Escherichia coli O157:H7
str. EC508]
gi|190901648|gb|EDV61404.1| flagellar biosynthetic protein FliQ [Escherichia coli B7A]
gi|190906440|gb|EDV66049.1| flagellar biosynthetic protein FliQ [Escherichia coli F11]
gi|192925966|gb|EDV80612.1| flagellar biosynthetic protein FliQ [Escherichia coli E22]
gi|192955526|gb|EDV86005.1| flagellar biosynthetic protein FliQ [Escherichia coli E110019]
gi|194412024|gb|EDX28336.1| flagellar biosynthetic protein FliQ [Escherichia coli B171]
gi|194416789|gb|EDX32915.1| flagellar biosynthetic protein FliQ [Shigella dysenteriae 1012]
gi|194421504|gb|EDX37518.1| flagellar biosynthetic protein FliQ [Escherichia coli 101-1]
gi|208725232|gb|EDZ74939.1| flagellar biosynthetic protein FliQ [Escherichia coli O157:H7
str. EC4206]
gi|208731216|gb|EDZ79905.1| flagellar biosynthetic protein FliQ [Escherichia coli O157:H7
str. EC4045]
gi|208741579|gb|EDZ89261.1| flagellar biosynthetic protein FliQ [Escherichia coli O157:H7
str. EC4042]
gi|209159788|gb|ACI37221.1| flagellar biosynthetic protein FliQ [Escherichia coli O157:H7
str. EC4115]
gi|209766778|gb|ACI81701.1| putative export protein FliQ [Escherichia coli]
gi|209766780|gb|ACI81702.1| putative export protein FliQ [Escherichia coli]
gi|209766782|gb|ACI81703.1| putative export protein FliQ [Escherichia coli]
gi|209766784|gb|ACI81704.1| putative export protein FliQ [Escherichia coli]
gi|209766786|gb|ACI81705.1| putative export protein FliQ [Escherichia coli]
gi|209912630|dbj|BAG77704.1| flagellar biosynthetic protein FliQ [Escherichia coli SE11]
gi|215265221|emb|CAS09611.1| flagellar biosynthesis protein [Escherichia coli O127:H6 str.
E2348/69]
gi|217318319|gb|EEC26746.1| flagellar biosynthetic protein FliQ [Escherichia coli O157:H7
str. TW14588]
gi|218352286|emb|CAU98043.1| flagellar biosynthesis protein [Escherichia coli 55989]
gi|218365575|emb|CAR03302.1| flagellar biosynthesis protein [Escherichia coli S88]
gi|218427508|emb|CAR08403.2| flagellar biosynthesis protein [Escherichia coli ED1a]
gi|218432539|emb|CAR13432.1| flagellar biosynthesis protein [Escherichia coli UMN026]
gi|222033688|emb|CAP76429.1| flagellar biosynthetic protein fliQ [Escherichia coli LF82]
gi|226900665|gb|EEH86924.1| flagellar biosynthetic protein FliQ [Escherichia sp. 3_2_53FAA]
gi|227837195|gb|EEJ47661.1| flagellar biosynthesis protein FliQ [Escherichia coli 83972]
gi|238861099|gb|ACR63097.1| flagellar biosynthesis protein [Escherichia coli BW2952]
gi|253324146|gb|ACT28748.1| flagellar biosynthetic protein FliQ [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254592999|gb|ACT72360.1| flagellar biosynthesis protein [Escherichia coli O157:H7 str.
TW14359]
gi|257754573|dbj|BAI26075.1| flagellar biosynthesis protein FliQ [Escherichia coli O26:H11
str. 11368]
gi|257759495|dbj|BAI30992.1| flagellar biosynthesis protein FliQ [Escherichia coli O103:H2
str. 12009]
gi|257764898|dbj|BAI36393.1| flagellar biosynthesis protein FliQ [Escherichia coli O111:H-
str. 11128]
gi|260448938|gb|ACX39360.1| flagellar biosynthetic protein FliQ [Escherichia coli DH1]
gi|281179011|dbj|BAI55341.1| flagellar biosynthetic protein FliQ [Escherichia coli SE15]
gi|281601388|gb|ADA74372.1| Flagellar biosynthetic protein fliQ [Shigella flexneri 2002017]
gi|284921857|emb|CBG34932.1| flagellar biosynthesis protein FliQ [Escherichia coli 042]
gi|290762999|gb|ADD56960.1| hypothetical protein G2583_2400 [Escherichia coli O55:H7 str.
CB9615]
gi|291427640|gb|EFF00667.1| fliQ [Escherichia coli FVEC1412]
gi|291432907|gb|EFF05886.1| flagellar biosynthetic protein FliQ [Escherichia coli B185]
gi|291470773|gb|EFF13257.1| flagellar biosynthetic protein FliQ [Escherichia coli B354]
gi|294494041|gb|ADE92797.1| flagellar biosynthetic protein FliQ [Escherichia coli IHE3034]
gi|298278518|gb|EFI20032.1| fliQ [Escherichia coli FVEC1302]
gi|299877710|gb|EFI85921.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 196-1]
gi|300297613|gb|EFJ53998.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 185-1]
gi|300304931|gb|EFJ59451.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 200-1]
gi|300316635|gb|EFJ66419.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 175-1]
gi|300357187|gb|EFJ73057.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 198-1]
gi|300399788|gb|EFJ83326.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 69-1]
gi|300403266|gb|EFJ86804.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 84-1]
gi|300410305|gb|EFJ93843.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 45-1]
gi|300412825|gb|EFJ96135.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 115-1]
gi|300419851|gb|EFK03162.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 182-1]
gi|300449201|gb|EFK12821.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 116-1]
gi|300454798|gb|EFK18291.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 21-1]
gi|300461019|gb|EFK24512.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 187-1]
gi|300525164|gb|EFK46233.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 119-7]
gi|300528803|gb|EFK49865.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 107-1]
gi|300840513|gb|EFK68273.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 124-1]
gi|300845736|gb|EFK73496.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 78-1]
gi|301077067|gb|EFK91873.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 146-1]
gi|305852387|gb|EFM52838.1| flagellar biosynthesis protein FliQ [Escherichia coli NC101]
gi|306907636|gb|EFN38139.1| flagellar biosynthetic protein FliQ [Escherichia coli W]
gi|307553962|gb|ADN46737.1| flagellar biosynthetic protein FliQ [Escherichia coli ABU 83972]
gi|307626575|gb|ADN70879.1| flagellar biosynthesis protein FliQ [Escherichia coli UM146]
gi|308120394|gb|EFO57656.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 145-7]
gi|309702238|emb|CBJ01555.1| flagellar biosynthesis protein FliQ [Escherichia coli ETEC
H10407]
gi|310332429|gb|EFP99664.1| flagellar biosynthetic protein FliQ [Escherichia coli 1827-70]
gi|312288610|gb|EFR16512.1| flagellar biosynthetic protein FliQ [Escherichia coli 2362-75]
gi|312946542|gb|ADR27369.1| flagellar biosynthesis protein FliQ [Escherichia coli O83:H1 str.
NRG 857C]
gi|313650171|gb|EFS14584.1| flagellar biosynthetic protein FliQ [Shigella flexneri 2a str.
2457T]
gi|315061249|gb|ADT75576.1| flagellar biosynthesis protein [Escherichia coli W]
gi|315136586|dbj|BAJ43745.1| hypothetical protein ECDH1ME8569_1889 [Escherichia coli DH1]
gi|315257219|gb|EFU37187.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 85-1]
gi|315286655|gb|EFU46088.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 110-3]
gi|315290266|gb|EFU49644.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 153-1]
gi|315296483|gb|EFU55780.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 16-3]
gi|320182734|gb|EFW57618.1| Flagellar biosynthesis protein FliQ [Shigella boydii ATCC 9905]
gi|320184487|gb|EFW59291.1| Flagellar biosynthesis protein FliQ [Shigella flexneri CDC
796-83]
gi|320191923|gb|EFW66570.1| Flagellar biosynthesis protein FliQ [Escherichia coli O157:H7
str. EC1212]
gi|320194338|gb|EFW68969.1| Flagellar biosynthesis protein FliQ [Escherichia coli WV_060327]
gi|320198640|gb|EFW73240.1| Flagellar biosynthesis protein FliQ [Escherichia coli EC4100B]
gi|320641797|gb|EFX11185.1| flagellar biosynthesis protein FliQ [Escherichia coli O157:H7
str. G5101]
gi|320647156|gb|EFX15989.1| flagellar biosynthesis protein FliQ [Escherichia coli O157:H-
str. 493-89]
gi|320652440|gb|EFX20738.1| flagellar biosynthesis protein FliQ [Escherichia coli O157:H-
str. H 2687]
gi|320658042|gb|EFX25804.1| flagellar biosynthesis protein FliQ [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320658614|gb|EFX26308.1| flagellar biosynthesis protein FliQ [Escherichia coli O55:H7 str.
USDA 5905]
gi|320668512|gb|EFX35339.1| flagellar biosynthesis protein FliQ [Escherichia coli O157:H7
str. LSU-61]
gi|323152720|gb|EFZ38992.1| flagellar biosynthetic protein FliQ [Escherichia coli EPECa14]
gi|323158572|gb|EFZ44586.1| flagellar biosynthetic protein FliQ [Escherichia coli E128010]
gi|323174671|gb|EFZ60291.1| flagellar biosynthetic protein FliQ [Escherichia coli LT-68]
gi|323180798|gb|EFZ66338.1| flagellar biosynthetic protein FliQ [Escherichia coli 1180]
gi|323186705|gb|EFZ72027.1| flagellar biosynthetic protein FliQ [Escherichia coli RN587/1]
gi|323378174|gb|ADX50442.1| flagellar biosynthetic protein FliQ [Escherichia coli KO11]
gi|323937219|gb|EGB33499.1| flagellar biosynthetic protein FliQ [Escherichia coli E1520]
gi|323940392|gb|EGB36583.1| flagellar biosynthetic protein FliQ [Escherichia coli E482]
gi|323948347|gb|EGB44334.1| flagellar biosynthetic protein FliQ [Escherichia coli H120]
gi|323952442|gb|EGB48315.1| flagellar biosynthetic protein FliQ [Escherichia coli H252]
gi|323956345|gb|EGB52088.1| flagellar biosynthetic protein FliQ [Escherichia coli H263]
gi|323961993|gb|EGB57592.1| flagellar biosynthetic protein FliQ [Escherichia coli H489]
gi|323968365|gb|EGB63772.1| flagellar biosynthetic protein FliQ [Escherichia coli M863]
gi|323972751|gb|EGB67951.1| flagellar biosynthetic protein FliQ [Escherichia coli TA007]
gi|323977870|gb|EGB72956.1| flagellar biosynthetic protein FliQ [Escherichia coli TW10509]
gi|324005852|gb|EGB75071.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 57-2]
gi|324013504|gb|EGB82723.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 60-1]
gi|324018858|gb|EGB88077.1| flagellar biosynthetic protein FliQ [Escherichia coli MS 117-3]
gi|324118998|gb|EGC12887.1| flagellar biosynthetic protein FliQ [Escherichia coli E1167]
gi|326342360|gb|EGD66141.1| Flagellar biosynthesis protein FliQ [Escherichia coli O157:H7
str. 1044]
gi|326344864|gb|EGD68611.1| Flagellar biosynthesis protein FliQ [Escherichia coli O157:H7
str. 1125]
gi|327253081|gb|EGE64735.1| flagellar biosynthetic protein FliQ [Escherichia coli STEC_7v]
gi|330911755|gb|EGH40265.1| flagellar biosynthesis protein FliQ [Escherichia coli AA86]
gi|331039368|gb|EGI11588.1| flagellar biosynthetic protein FliQ [Escherichia coli H736]
gi|331043267|gb|EGI15405.1| flagellar biosynthetic protein FliQ [Escherichia coli M605]
gi|331049459|gb|EGI21531.1| flagellar biosynthetic protein FliQ [Escherichia coli M718]
gi|331056243|gb|EGI28252.1| flagellar biosynthetic protein FliQ [Escherichia coli TA206]
gi|331059244|gb|EGI31221.1| flagellar biosynthetic protein FliQ [Escherichia coli TA143]
gi|331063834|gb|EGI35745.1| flagellar biosynthetic protein FliQ [Escherichia coli TA271]
gi|331069660|gb|EGI41047.1| flagellar biosynthetic protein FliQ [Escherichia coli TA280]
gi|331074291|gb|EGI45611.1| flagellar biosynthetic protein FliQ [Escherichia coli H591]
gi|331079716|gb|EGI50913.1| flagellar biosynthetic protein FliQ [Escherichia coli H299]
gi|332093094|gb|EGI98158.1| flagellar biosynthetic protein FliQ [Shigella boydii 5216-82]
gi|332096903|gb|EGJ01892.1| flagellar biosynthetic protein FliQ [Shigella boydii 3594-74]
gi|332343675|gb|AEE57009.1| flagellar biosynthetic protein FliQ [Escherichia coli UMNK88]
gi|332756105|gb|EGJ86458.1| flagellar biosynthetic protein FliQ [Shigella flexneri 4343-70]
gi|332757329|gb|EGJ87666.1| flagellar biosynthetic protein FliQ [Shigella flexneri 2747-71]
gi|332757515|gb|EGJ87850.1| flagellar biosynthetic protein FliQ [Shigella flexneri K-671]
gi|332766687|gb|EGJ96891.1| flagellar biosynthetic protein FliQ [Shigella flexneri 2930-71]
gi|333003045|gb|EGK22599.1| flagellar biosynthetic protein FliQ [Shigella flexneri VA-6]
gi|333003261|gb|EGK22807.1| flagellar biosynthetic protein FliQ [Shigella flexneri K-218]
gi|333004054|gb|EGK23588.1| flagellar biosynthetic protein FliQ [Shigella flexneri K-272]
gi|333017622|gb|EGK36934.1| flagellar biosynthetic protein FliQ [Shigella flexneri K-304]
gi|333017827|gb|EGK37134.1| flagellar biosynthetic protein FliQ [Shigella flexneri K-227]
Length = 89
Score = 54.1 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 33/85 (38%), Positives = 54/85 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + AM L+ +AP+L A+ G++I+ LQA TQI E+TL+F+PKIIAVFI
Sbjct: 1 MTPESVMMMGTEAMKVALALAAPLLLVALVTGLIISILQAATQINEMTLSFIPKIIAVFI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
+II+ P++ + +V + + +
Sbjct: 61 AIIIAGPWMLNLLLDYVRTLFTNLP 85
>gi|293605017|ref|ZP_06687412.1| flagellar biosynthetic protein FliQ [Achromobacter piechaudii
ATCC 43553]
gi|292816586|gb|EFF75672.1| flagellar biosynthetic protein FliQ [Achromobacter piechaudii
ATCC 43553]
Length = 89
Score = 54.1 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 53/85 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ +A AM +L+ + P+L + +G++I+ QA TQI E+TL+F+PK++A+
Sbjct: 1 MTAETVMTMAYQAMKIVLAMAGPLLLVVLVVGLVISIFQAATQINEMTLSFIPKLLAMCG 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
L++ P++ G + ++ ++ +I
Sbjct: 61 VLVLLGPWLIGVMVDYIRQLIGQIP 85
>gi|149203127|ref|ZP_01880098.1| export protein FliQ, family 3 [Roseovarius sp. TM1035]
gi|149143673|gb|EDM31709.1| export protein FliQ, family 3 [Roseovarius sp. TM1035]
Length = 89
Score = 54.1 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 48/87 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
+NE + R ++W + S P+L A+ G+++ QALT IQE+TLTFVPK+ A+ +
Sbjct: 2 LNEVLFFDTLRESLWISVIISFPILAVALLAGLVVGLFQALTSIQELTLTFVPKLGAIIV 61
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
I+ F+ + +F L I +
Sbjct: 62 VFWITMGFMTQTLVTFFQDRLIPIITG 88
>gi|261344131|ref|ZP_05971775.1| flagellar biosynthetic protein FliQ [Providencia rustigianii DSM
4541]
gi|282567723|gb|EFB73258.1| flagellar biosynthetic protein FliQ [Providencia rustigianii DSM
4541]
Length = 89
Score = 54.1 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 54/85 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + AM L +AP+L +A+ G++I+ LQA TQ+ E+TL+F+PKI++V
Sbjct: 1 MTPESVMAMGTEAMKIALMLAAPLLLAALAAGLIISLLQAATQVNEMTLSFIPKILSVIS 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
T+II+ P++ ++ ++ + S +
Sbjct: 61 TIIIAGPWMLNLLTDYMRQLFSNLP 85
>gi|284007638|emb|CBA73295.1| type III secretion protein EscS,SsaS,YscS [Arsenophonus nasoniae]
Length = 74
Score = 54.1 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 46/71 (64%)
Query: 14 MWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQI 73
+W +L S P++ A G+L++ LQALTQIQ+ TL F+ K++AV ITL +S ++G +
Sbjct: 2 LWIVLLLSLPIVIVASITGLLVSILQALTQIQDQTLQFLIKLVAVCITLAVSYHWMGSAL 61
Query: 74 SSFVTLVLSRI 84
++ L +I
Sbjct: 62 LNYAILSFDQI 72
>gi|91792695|ref|YP_562346.1| flagellar biosynthetic protein FliQ [Shewanella denitrificans
OS217]
gi|91714697|gb|ABE54623.1| flagellar biosynthetic protein FliQ [Shewanella denitrificans
OS217]
Length = 89
Score = 54.1 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 46/85 (54%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ +++I R A+ I+ + ++ +F+G+++A QA T I E TL+F+P+++
Sbjct: 1 MSPEALIDIFREALSVIVLIVSAIILPGLFIGLIVAVFQAATSINEQTLSFLPRLLVTLF 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
L+ ++ + F +++ I
Sbjct: 61 ALMYLGHWLVQTMMDFFLQMVNLIP 85
>gi|266621914|ref|ZP_06114849.1| flagellar biosynthetic protein FliQ [Clostridium hathewayi DSM
13479]
gi|288866387|gb|EFC98685.1| flagellar biosynthetic protein FliQ [Clostridium hathewayi DSM
13479]
Length = 87
Score = 54.1 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 48/86 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+E+ + AM + P+L ++ +G+++A QA TQI E TLTFVPK++ + +
Sbjct: 1 MTADQVMEVMKEAMMVAFEIAGPLLIISIVVGLIVAIFQAATQIHEQTLTFVPKLLVIAL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
L+ ++ + FV + + + S
Sbjct: 61 VLLALGSWMFKVMDEFVVELFAIMAS 86
>gi|254785481|ref|YP_003072910.1| flagellar biosynthetic protein FliQ [Teredinibacter turnerae
T7901]
gi|237686706|gb|ACR13970.1| flagellar biosynthetic protein FliQ [Teredinibacter turnerae
T7901]
Length = 89
Score = 54.1 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 47/85 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M L++ A + + A ++ ++ +G+L++ QA TQI E TL+F+P+++
Sbjct: 1 MTPEIALQLFGDAFFLTVVMVAVIVGPSLAVGLLVSTFQAATQINEQTLSFLPRLLVTIA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
T+++ P++ ++ T ++ +I
Sbjct: 61 TIMLVGPWLLQRLMDLFTGLMMQIP 85
>gi|254486554|ref|ZP_05099759.1| flagellar biosynthetic protein FliQ [Roseobacter sp. GAI101]
gi|214043423|gb|EEB84061.1| flagellar biosynthetic protein FliQ [Roseobacter sp. GAI101]
Length = 89
Score = 54.1 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 41/77 (53%)
Query: 2 NEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFIT 61
+E + R +W L S P+L A+ G+ I +QALT IQE+TLTFVPK+ +
Sbjct: 3 DEVIFYDTLRQGLWVALIISVPILTVALITGVTIGLVQALTSIQEMTLTFVPKLAGIGAV 62
Query: 62 LIISAPFIGGQISSFVT 78
+S F+ + SF
Sbjct: 63 FWVSMSFMTETLVSFFH 79
>gi|260767695|ref|ZP_05876630.1| flagellar biosynthesis protein FliQ [Vibrio furnissii CIP 102972]
gi|260617204|gb|EEX42388.1| flagellar biosynthesis protein FliQ [Vibrio furnissii CIP 102972]
gi|315179473|gb|ADT86387.1| flagellar biosynthesis protein Q [Vibrio furnissii NCTC 11218]
Length = 89
Score = 54.1 bits (129), Expect = 7e-06, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 48/88 (54%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +E+ R A+W +L ++ ++ +G+++A QA T I E TL+F+P++I +
Sbjct: 1 MTPEVFVEMFRDALWMVLIMVCAIIVPSLLIGLVVAVFQAATSINEQTLSFLPRLIVTLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L++ A ++ + F ++ R+ L
Sbjct: 61 ALMLFAHWMTQMMMEFFFAMIERLPQVL 88
>gi|288573012|ref|ZP_06391369.1| export protein FliQ family 3 [Dethiosulfovibrio peptidovorans DSM
11002]
gi|288568753|gb|EFC90310.1| export protein FliQ family 3 [Dethiosulfovibrio peptidovorans DSM
11002]
Length = 89
Score = 54.1 bits (129), Expect = 7e-06, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 49/88 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V ++ A+ L +S P+L AM +G+++ LQ T IQE TL+FVPKIIA+
Sbjct: 1 MEAFSVSDMLMEAIKVSLMASLPILIVAMVVGLIVGILQTATSIQEQTLSFVPKIIAIMG 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L++ P+I G + +L ++ +
Sbjct: 61 ALVVMGPWIFGVVRKLAVDLLGQLDRFV 88
>gi|74101641|gb|AAZ99731.1| FliQL [Aeromonas hydrophila]
Length = 93
Score = 54.1 bits (129), Expect = 7e-06, Method: Composition-based stats.
Identities = 19/87 (21%), Positives = 47/87 (54%)
Query: 2 NEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFIT 61
+ + A+ ++ + ++ ++ +G++++ QA TQIQE TL+F+P+ + +T
Sbjct: 6 TPEQSVALIGGAVNLVVVMVSVLIVPSLIVGLVVSVFQAATQIQEQTLSFLPRFLVTLMT 65
Query: 62 LIISAPFIGGQISSFVTLVLSRIQSSL 88
LI + ++ QI++ + +I +
Sbjct: 66 LIFTGNWLLSQITTLFHDLFLKIPGLI 92
>gi|331006680|ref|ZP_08329958.1| Flagellar biosynthesis protein fliQ [gamma proteobacterium
IMCC1989]
gi|330419512|gb|EGG93900.1| Flagellar biosynthesis protein fliQ [gamma proteobacterium
IMCC1989]
Length = 89
Score = 54.1 bits (129), Expect = 7e-06, Method: Composition-based stats.
Identities = 16/85 (18%), Positives = 41/85 (48%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+++ A++ ++ ++ + +G++++ QA TQI E TL+F+P+++
Sbjct: 1 MTPEVVMQLFGNALYLVVLMVTLIVGPGLIVGLMVSMFQAATQINEQTLSFLPRLLITLG 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
++ ++ Q + I
Sbjct: 61 AIMFLGGWLITQFLDLFHELFLNIP 85
>gi|167577334|ref|ZP_02370208.1| type III secretion inner membrane protein SctS [Burkholderia
thailandensis TXDOH]
Length = 87
Score = 54.1 bits (129), Expect = 7e-06, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 47/82 (57%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M D++ + M L S PV+ A G+ I+FLQA+T +QE ++++ K++AV +
Sbjct: 1 METDDLIRLTLQGMMLCLYISLPVVLVAAASGLAISFLQAITSLQEQSISYGVKLVAVTV 60
Query: 61 TLIISAPFIGGQISSFVTLVLS 82
T+ I+ P+ +I F +L+
Sbjct: 61 TVAITGPWAAAEILHFAQQLLT 82
>gi|304311652|ref|YP_003811250.1| Type III secretory pathway protein [gamma proteobacterium HdN1]
gi|301797385|emb|CBL45605.1| Type III secretory pathway protein [gamma proteobacterium HdN1]
Length = 89
Score = 54.1 bits (129), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 51/83 (61%)
Query: 6 VLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIIS 65
V+++ + A+W +L SAP++ A G++IAFLQA+TQ+QE TL F K++ V + ++
Sbjct: 5 VIQLTQEALWLLLMLSAPIILGAAASGLVIAFLQAVTQLQEQTLGFAVKLVVVSALIFLT 64
Query: 66 APFIGGQISSFVTLVLSRIQSSL 88
+ +G + + + + + + +
Sbjct: 65 SGLVGETLFQYASRIFTSFPALV 87
>gi|94496749|ref|ZP_01303324.1| hypothetical protein SKA58_16458 [Sphingomonas sp. SKA58]
gi|94423762|gb|EAT08788.1| hypothetical protein SKA58_16458 [Sphingomonas sp. SKA58]
Length = 89
Score = 54.1 bits (129), Expect = 7e-06, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 48/86 (55%)
Query: 3 EADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITL 62
++ + A+W +L SAP + +A +G+L+A +QA TQ+QE TL + K A+ T+
Sbjct: 2 SDSIIRMTIDALWLVLLLSAPPIVAASAVGLLVALVQAATQLQEQTLQYTLKFFAIVATI 61
Query: 63 IISAPFIGGQISSFVTLVLSRIQSSL 88
++A + G + + + ++ + +
Sbjct: 62 FLTASLLAGSLYQYGNTIFTQFPAMV 87
>gi|32490798|ref|NP_871052.1| hypothetical protein WGLp049 [Wigglesworthia glossinidia
endosymbiont of Glossina brevipalpis]
gi|25166004|dbj|BAC24195.1| fliQ [Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis]
Length = 90
Score = 54.1 bits (129), Expect = 7e-06, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 52/88 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + A+ + SA L +AM G++I+ LQA TQI E+TL+F+PKI++V I
Sbjct: 1 MTSETVILLGFNAIKMAIKISAIPLLAAMITGLIISILQASTQINEMTLSFIPKILSVII 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
T++I ++ ++ +L++I L
Sbjct: 61 TILIFGSWMLRTFVEYMVSLLNQIPFML 88
>gi|300871794|ref|YP_003786667.1| putative flagellar protein FliO/FliZ [Brachyspira pilosicoli
95/1000]
gi|300689495|gb|ADK32166.1| putative flagellar protein FliO/FliZ [Brachyspira pilosicoli
95/1000]
Length = 89
Score = 53.7 bits (128), Expect = 7e-06, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 53/86 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN+ ++ + + +WT + SAPVL ++ +G++I+ +QA T IQE TLTFVPK+IA+
Sbjct: 1 MNDTSIIVLVQQTLWTFMLLSAPVLGVSIIVGLIISIIQATTSIQEQTLTFVPKMIAMLA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
+ A ++ IS F + + + +
Sbjct: 61 VIYFLASWMINYISGFTVRLFNILPT 86
>gi|148261122|ref|YP_001235249.1| export protein FliQ [Acidiphilium cryptum JF-5]
gi|326404523|ref|YP_004284605.1| flagellar biosynthetic protein FliQ [Acidiphilium multivorum
AIU301]
gi|146402803|gb|ABQ31330.1| export protein FliQ, family 3 [Acidiphilium cryptum JF-5]
gi|325051385|dbj|BAJ81723.1| flagellar biosynthetic protein FliQ [Acidiphilium multivorum
AIU301]
Length = 88
Score = 53.7 bits (128), Expect = 7e-06, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 46/82 (56%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + V+ A SAP L +A+ G++I+ LQA+TQI E T+ F+PK+ AV
Sbjct: 1 MTDPAVITSLHEAFLVAAQLSAPPLLAALVAGVVISLLQAVTQINEATIVFLPKMAAVAG 60
Query: 61 TLIISAPFIGGQISSFVTLVLS 82
TL+I F+ G +S F + +
Sbjct: 61 TLMIMGSFLLGTLSQFAHEIFT 82
>gi|281411925|ref|YP_003346004.1| flagellar biosynthetic protein FliQ [Thermotoga naphthophila
RKU-10]
gi|281373028|gb|ADA66590.1| flagellar biosynthetic protein FliQ [Thermotoga naphthophila
RKU-10]
Length = 88
Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 49/83 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M L+I ++ + +L P L ++ +G++I+ QA+TQI E TL F P+II +F+
Sbjct: 1 MTIEVFLDIMKSGISLLLKIIVPPLVVSLIVGLVISIFQAVTQIHEQTLMFAPRIIVLFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSR 83
T++ + ++ +I F + +L +
Sbjct: 61 TILFLSGWMAQKILDFFSEMLQK 83
>gi|167626137|ref|YP_001676431.1| export protein FliQ [Shewanella halifaxensis HAW-EB4]
gi|167356159|gb|ABZ78772.1| export protein FliQ family 3 [Shewanella halifaxensis HAW-EB4]
Length = 89
Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 44/86 (51%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M ++ + A++ +++ ++ + +G+ IA QA TQ+ E TL+F+P+++ +
Sbjct: 1 MGVNELTALFAEAIFLVVAMVGVLVVPGLLVGLFIAVFQAATQVNEQTLSFLPRLVITLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
++ + ++ +I F + I
Sbjct: 61 MVVFAGEWLLMKICDFFDRLFINIPH 86
>gi|293416350|ref|ZP_06658989.1| type III secretion protein SctS [Escherichia coli B185]
gi|291431706|gb|EFF04689.1| type III secretion protein SctS [Escherichia coli B185]
Length = 86
Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 41/77 (53%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
+++ A++ +L SA + A +G+LI Q +TQ+QE TL F K++ + + +
Sbjct: 3 ELVFAGNKALYLVLCLSAWPVAVATLIGLLIGIFQTVTQLQEQTLPFGLKLLGICLCFFL 62
Query: 65 SAPFIGGQISSFVTLVL 81
+ + G + +F ++
Sbjct: 63 LSGWYGDALLAFGRDMM 79
>gi|51587259|emb|CAE53649.1| putative HrcS [Pseudomonas gingeri]
Length = 78
Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 14 MWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQI 73
M+ ++ +AP L A+ +G++ + LQAL QIQ+ TL F K+ AV +TL + +IG ++
Sbjct: 1 MFLVVILTAPPLGVAVLVGVITSLLQALMQIQDQTLPFGIKLAAVGLTLAATGRWIGVEL 60
Query: 74 SSFVTLVLSRIQS 86
F+ L I
Sbjct: 61 IQFINLSFDLIAR 73
>gi|311105949|ref|YP_003978802.1| flagellar biosynthetic protein FliQ [Achromobacter xylosoxidans
A8]
gi|310760638|gb|ADP16087.1| flagellar biosynthetic protein FliQ [Achromobacter xylosoxidans
A8]
Length = 89
Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 52/85 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + AM +L+ + P+L + +G++I+ QA TQI E+TL+F+PK++A+
Sbjct: 1 MTAETVMTMTYQAMKIVLAMAGPLLLVTLVVGLVISIFQAATQINEMTLSFIPKLLAMCG 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
L++ P++ G + ++ ++ +I
Sbjct: 61 VLVLLGPWLIGVMVDYIRQLIGQIP 85
>gi|171319015|ref|ZP_02908142.1| export protein FliQ family 3 [Burkholderia ambifaria MEX-5]
gi|171095770|gb|EDT40723.1| export protein FliQ family 3 [Burkholderia ambifaria MEX-5]
Length = 94
Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 41/85 (48%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + + +I+ S PV+ +A+ +GIL+ QA+TQ+Q+ ++ + KI V
Sbjct: 1 MEAFSLDYAVNQVLTSIVMVSGPVVLAALVVGILVGIAQAVTQVQDQSIGYGIKIAVVLF 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
L+I ++ ++ + I
Sbjct: 61 ILVIFGKWMAVEMLAAFERSFDWIP 85
>gi|238785154|ref|ZP_04629148.1| Secretion system apparatus protein ssaS [Yersinia bercovieri ATCC
43970]
gi|238713969|gb|EEQ05987.1| Secretion system apparatus protein ssaS [Yersinia bercovieri ATCC
43970]
Length = 89
Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 54/86 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ A V+ +A +W +L S PV+ A +G++++ LQALTQIQ+ TL F+ K++AV
Sbjct: 1 MSNAIVIHLATQLLWIVLLLSMPVVVVASVVGLVVSLLQALTQIQDQTLQFLIKLLAVSA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
TL+I+ ++G + ++ +I S
Sbjct: 61 TLLITYHWMGSTLLNYTQQTFLQITS 86
>gi|163852025|ref|YP_001640068.1| flagellar biosynthetic protein FliQ [Methylobacterium extorquens
PA1]
gi|218530779|ref|YP_002421595.1| flagellar biosynthetic protein FliQ [Methylobacterium
chloromethanicum CM4]
gi|240139292|ref|YP_002963767.1| flagellar biosynthesis [Methylobacterium extorquens AM1]
gi|254561748|ref|YP_003068843.1| flagellar biosynthesis [Methylobacterium extorquens DM4]
gi|163663630|gb|ABY30997.1| flagellar biosynthetic protein FliQ [Methylobacterium extorquens
PA1]
gi|218523082|gb|ACK83667.1| flagellar biosynthetic protein FliQ [Methylobacterium
chloromethanicum CM4]
gi|240009264|gb|ACS40490.1| flagellar biosynthesis [Methylobacterium extorquens AM1]
gi|254269026|emb|CAX24987.1| flagellar biosynthesis [Methylobacterium extorquens DM4]
Length = 88
Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats.
Identities = 30/77 (38%), Positives = 53/77 (68%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +L+IAR ++ L + P++ A+ +G++++ QALTQIQE TL +VPKI+AVF
Sbjct: 1 MTGLAILDIARDGIFVFLKVAGPMMIVALVVGLIVSLFQALTQIQEQTLIYVPKIVAVFG 60
Query: 61 TLIISAPFIGGQISSFV 77
+++ PFIG +++++
Sbjct: 61 VMLLMLPFIGDAMAAYM 77
>gi|51587251|emb|CAE53643.1| putative HrcS [Pseudomonas syringae pv. phaseolicola]
Length = 88
Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 47/83 (56%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
+ L + + M+ ++ +A L A+ +G+L + LQAL QIQ+ TL F K+ AV +TL +
Sbjct: 2 EALALFKQGMFLVVILTASPLGVAVLVGVLTSLLQALMQIQDQTLPFGIKLGAVGLTLAM 61
Query: 65 SAPFIGGQISSFVTLVLSRIQSS 87
+ +IG ++ + + I S
Sbjct: 62 TGRWIGVELIQLINMAFDLIARS 84
>gi|42525571|ref|NP_970669.1| flagellar biosynthetic protein FliQ [Treponema denticola ATCC
35405]
gi|13122807|gb|AAK12643.1|AF232219_2 FliQ [Treponema denticola]
gi|41815582|gb|AAS10550.1| flagellar biosynthetic protein FliQ [Treponema denticola ATCC
35405]
gi|325475309|gb|EGC78494.1| FliQ [Treponema denticola F0402]
Length = 89
Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 50/88 (56%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M ++ + R + IL SAP+L +A+ +G+++A QA T IQE TLTFVPKI+ +
Sbjct: 1 MTTGTIVTLMREGIGIILMLSAPILVAALLVGLIVAIFQATTSIQEQTLTFVPKILTILG 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+ + A ++ + + +++ I +
Sbjct: 61 MIALLATWMITVLREYFVSLMNLIPQLV 88
>gi|167567197|ref|ZP_02360113.1| flagellar biosynthetic protein FliQ [Burkholderia oklahomensis
EO147]
gi|167574621|ref|ZP_02367495.1| flagellar biosynthetic protein FliQ [Burkholderia oklahomensis
C6786]
Length = 90
Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 44/83 (53%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
+ +E+ A+ I+ A ++ + +G+++A QA TQI E TL+F+P+++A
Sbjct: 2 LTPDLAVELVGNAIRIIVVMVALIIAPGLVIGLVVALFQAATQINEQTLSFLPRLLATLG 61
Query: 61 TLIISAPFIGGQISSFVTLVLSR 83
L+ + ++ + + + +R
Sbjct: 62 VLVFAGHWLVQTLMDYCVAIFTR 84
>gi|332531134|ref|ZP_08407048.1| flagellar biosynthetic protein FliQ [Hylemonella gracilis ATCC
19624]
gi|332039419|gb|EGI75831.1| flagellar biosynthetic protein FliQ [Hylemonella gracilis ATCC
19624]
Length = 89
Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 49/86 (56%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN VL I + A++ +L SAP+L + + +G+L++ QA+TQI E TL FVPK++
Sbjct: 1 MNAEMVLTIGQEALFILLMVSAPLLGAVLLVGLLVSLFQAITQIHEATLAFVPKLVVALA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
+ P++ + ++ + + S
Sbjct: 61 VFAWAGPWMLSVLVDYIRRTIEMLPS 86
>gi|188581882|ref|YP_001925327.1| flagellar biosynthetic protein FliQ [Methylobacterium populi
BJ001]
gi|179345380|gb|ACB80792.1| flagellar biosynthetic protein FliQ [Methylobacterium populi
BJ001]
Length = 88
Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats.
Identities = 30/77 (38%), Positives = 53/77 (68%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +L+IAR ++ L + P++ A+ +G++++ QALTQIQE TL +VPKI+AVF
Sbjct: 1 MTGLAILDIARDGIFVFLKVAGPLMIVALVVGLIVSLFQALTQIQEQTLIYVPKIVAVFG 60
Query: 61 TLIISAPFIGGQISSFV 77
+++ PFIG +++++
Sbjct: 61 VMLLMLPFIGDAMAAYM 77
>gi|85710190|ref|ZP_01041255.1| flagellar biosynthetic protein [Erythrobacter sp. NAP1]
gi|85688900|gb|EAQ28904.1| flagellar biosynthetic protein [Erythrobacter sp. NAP1]
Length = 90
Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 45/85 (52%)
Query: 2 NEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFIT 61
++A +L +A +W PVL SA+ +G+++ +QA T + E TLTFVPK+ +
Sbjct: 3 DDAQLLALADQTLWVTALIVGPVLLSALAVGLIVGIIQAATSVNEQTLTFVPKLAITALV 62
Query: 62 LIISAPFIGGQISSFVTLVLSRIQS 86
+I + + F+ + +I +
Sbjct: 63 FVILGGTMMALLGDFMREIFGQIAA 87
>gi|94314221|ref|YP_587430.1| flagellar biosynthesis protein FliQ [Cupriavidus metallidurans
CH34]
gi|93358073|gb|ABF12161.1| flagellar biosynthesis protein FliQ [Cupriavidus metallidurans
CH34]
Length = 89
Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 51/86 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ IA AM L +AP+L A+ G++++ QA TQI E+TLTF+PK+IA+F
Sbjct: 1 MTPEMVMTIATQAMKMTLMLAAPLLLVALAAGLVVSLFQAATQINEMTLTFIPKLIALFA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
T+++ P++ ++ V I +
Sbjct: 61 TMVLVGPWMINTFVDYMRQVFQSIPA 86
>gi|312884812|ref|ZP_07744504.1| flagellar biosynthesis protein FliQ [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309367464|gb|EFP95024.1| flagellar biosynthesis protein FliQ [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 89
Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 44/88 (50%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + + A+W +++ A ++ + +G+ +A QA TQI E TL+F+P+++ +
Sbjct: 1 MTPEMTVTLFSNAVWLVITIVAVLVVPGLVVGLGVAIFQAATQINEQTLSFLPRLLVTLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+I + ++ +I + I +
Sbjct: 61 MVIFAGHWMLRKIMDLFDYLFHNIPGMI 88
>gi|160939625|ref|ZP_02086973.1| hypothetical protein CLOBOL_04517 [Clostridium bolteae ATCC
BAA-613]
gi|158437416|gb|EDP15180.1| hypothetical protein CLOBOL_04517 [Clostridium bolteae ATCC
BAA-613]
Length = 87
Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 50/86 (58%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ V+EI + AM + P+L ++ +G+L+A QA TQI E TLTFVPK+I + +
Sbjct: 1 MSAEQVMEIMKEAMLVAFEIAGPLLIISIAVGLLVAIFQAATQIHEQTLTFVPKLIVIAL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
L+ ++ ++ FV + + + +
Sbjct: 61 VLLALGSWMSKVMNEFVVELFAIMAA 86
>gi|51587279|emb|CAE53664.1| putative HrcS [Pseudomonas fluorescens bv. V]
gi|51587315|emb|CAE53691.1| putative HrcS [Pseudomonas fluorescens bv. V]
Length = 87
Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 48/81 (59%)
Query: 7 LEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISA 66
+ + + M ++ SAP L A+ +G+L + +QAL Q+Q+ TL F K++AV ITLI++
Sbjct: 4 IVLFKQGMLLVVVLSAPPLIVAVVVGVLTSLVQALMQVQDQTLPFGIKLVAVGITLIMTG 63
Query: 67 PFIGGQISSFVTLVLSRIQSS 87
+IG ++ + L I S
Sbjct: 64 RWIGVELIQLINLTFDMIGRS 84
>gi|237755396|ref|ZP_04584023.1| flagellar biosynthetic protein FliQ [Sulfurihydrogenibium
yellowstonense SS-5]
gi|237692437|gb|EEP61418.1| flagellar biosynthetic protein FliQ [Sulfurihydrogenibium
yellowstonense SS-5]
Length = 89
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 42/84 (50%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + + + PV+ +G+LI+ QA TQI E+T+TFVPKIIA I
Sbjct: 1 MTIDMAVNLTSEMFKIAILVGGPVILITFIVGLLISIFQAATQINEMTITFVPKIIAAVI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
LII ++ ++ + VL I
Sbjct: 61 GLIIFGSWMTTKLVDYTKEVLMMI 84
>gi|218506520|ref|ZP_03504398.1| flagellar biosynthesis protein FliQ [Rhizobium etli Brasil 5]
Length = 70
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/70 (60%), Positives = 59/70 (84%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEAD L++ +AA+WT+L ++ P + SAM +G++IA +QALTQ+QE TLTFVPKI+AV I
Sbjct: 1 MNEADALDLFQAAIWTVLIAAGPAVISAMVVGLVIALIQALTQVQEATLTFVPKILAVLI 60
Query: 61 TLIISAPFIG 70
T+ ++APFIG
Sbjct: 61 TVGVTAPFIG 70
>gi|115350084|ref|YP_771923.1| flagellar biosynthesis protein FliQ [Burkholderia ambifaria AMMD]
gi|170698076|ref|ZP_02889157.1| flagellar biosynthetic protein FliQ [Burkholderia ambifaria
IOP40-10]
gi|171316886|ref|ZP_02906095.1| flagellar biosynthetic protein FliQ [Burkholderia ambifaria
MEX-5]
gi|172059103|ref|YP_001806755.1| flagellar biosynthesis protein FliQ [Burkholderia ambifaria
MC40-6]
gi|115280072|gb|ABI85589.1| flagellar biosynthetic protein FliQ [Burkholderia ambifaria AMMD]
gi|170137037|gb|EDT05284.1| flagellar biosynthetic protein FliQ [Burkholderia ambifaria
IOP40-10]
gi|171097967|gb|EDT42785.1| flagellar biosynthetic protein FliQ [Burkholderia ambifaria
MEX-5]
gi|171991620|gb|ACB62539.1| flagellar biosynthetic protein FliQ [Burkholderia ambifaria
MC40-6]
Length = 90
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 52/86 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ +A AM L +AP+L A+ +G++++ QA TQI E TL+F+PK++AV
Sbjct: 1 MTPEQVMTLAHQAMMVGLLLAAPLLLVALAVGLVVSLFQAATQINESTLSFIPKLLAVAA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
TL+I+ P++ + ++ L + +
Sbjct: 61 TLVIAGPWMLTTMLDYLRQTLLHVAT 86
>gi|188997534|ref|YP_001931785.1| flagellar biosynthetic protein FliQ [Sulfurihydrogenibium sp.
YO3AOP1]
gi|188932601|gb|ACD67231.1| flagellar biosynthetic protein FliQ [Sulfurihydrogenibium sp.
YO3AOP1]
Length = 89
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 43/84 (51%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + + + + PV+ +G+LI+ QA TQI E+T+TFVPKIIA I
Sbjct: 1 MTIDMAVNLTSDMFKITILVAGPVILITFIVGLLISIFQAATQINEMTITFVPKIIAAVI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
LII ++ ++ + VL I
Sbjct: 61 GLIIFGSWMTTKLVDYTKEVLMMI 84
>gi|315639269|ref|ZP_07894431.1| flagellar biosynthetic protein FliQ [Campylobacter upsaliensis
JV21]
gi|315480595|gb|EFU71237.1| flagellar biosynthetic protein FliQ [Campylobacter upsaliensis
JV21]
Length = 89
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 51/88 (57%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M E+ ++ + A L S P+L + + G++I+ QA TQI E+TL+FVPKII V +
Sbjct: 1 MEESTLVALGVATFKVTLLLSLPMLLAGLIAGLIISIFQATTQINEMTLSFVPKIILVVV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+I P++ + F +L++I + +
Sbjct: 61 VIIFLMPWMTSTMIDFTANILNQIPTFI 88
>gi|57505303|ref|ZP_00371232.1| flagellar biosynthetic protein FliQ [Campylobacter upsaliensis
RM3195]
gi|57016439|gb|EAL53224.1| flagellar biosynthetic protein FliQ [Campylobacter upsaliensis
RM3195]
Length = 89
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 51/88 (57%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M E+ ++ + A L S P+L + + G++I+ QA TQI E+TL+FVPKII V +
Sbjct: 1 MEESTLVALGVATFKVTLLLSLPMLLAGLIAGLIISIFQATTQINEMTLSFVPKIILVVV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+I P++ + F +L++I + +
Sbjct: 61 IIIFLMPWMTSTMIDFTANILNQIPTFI 88
>gi|167568049|ref|ZP_02360965.1| type III secretion apparatus protein EscS [Burkholderia
oklahomensis EO147]
gi|167572948|ref|ZP_02365822.1| type III secretion apparatus protein EscS [Burkholderia
oklahomensis C6786]
Length = 89
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 53/84 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+EA + ++A MW +L S PV+ A +GIL++ +QALTQ+Q+ T+ F+ K++AV +
Sbjct: 1 MSEAVITQLAAQMMWLVLLLSLPVVVVASVVGILVSLVQALTQVQDQTIQFLIKLLAVAV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
TL + ++G + ++ +I
Sbjct: 61 TLAATYHWMGDVLVNYTLQSFDQI 84
>gi|257457602|ref|ZP_05622769.1| flagellar biosynthetic protein FliQ [Treponema vincentii ATCC
35580]
gi|257444988|gb|EEV20064.1| flagellar biosynthetic protein FliQ [Treponema vincentii ATCC
35580]
Length = 90
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 48/88 (54%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ ++ + R ++ + +AP+L +A+ +G+++A QA T IQE TLTFVPKI+ +
Sbjct: 1 MSIGMIVNLMREGIFQVFVLAAPILLAALVVGLIVAIFQATTSIQEQTLTFVPKILTILG 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L + ++ + + + I +
Sbjct: 61 MLALLGGWMFSVLRDYTVRLFDMIPQLV 88
>gi|170769378|ref|ZP_02903831.1| flagellar biosynthetic protein FliQ [Escherichia albertii
TW07627]
gi|170121702|gb|EDS90633.1| flagellar biosynthetic protein FliQ [Escherichia albertii
TW07627]
Length = 89
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/85 (38%), Positives = 54/85 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + AM L+ +AP+L A+ G++I+ LQA TQI E+TL+F+PKIIAVFI
Sbjct: 1 MTPESVMMMGTEAMNVALALAAPLLLVALVTGLIISILQAATQINEMTLSFIPKIIAVFI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
+II+ P++ + +V + + +
Sbjct: 61 AIIIAGPWMLNLLLDYVRTLFTNLP 85
>gi|119775421|ref|YP_928161.1| flagellar biosynthetic protein FliQ [Shewanella amazonensis SB2B]
gi|119767921|gb|ABM00492.1| flagellar biosynthetic protein FliQ [Shewanella amazonensis SB2B]
Length = 89
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 47/86 (54%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +++I R A+ I+ A ++ + +G+++A QA T I E TL+F+P+++ +
Sbjct: 1 MTPEALIDIFREALAVIVMMVAVIIVPGLVVGLIVAVFQAATSINEQTLSFLPRLLVTLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
L+++ ++ + F ++ I S
Sbjct: 61 ALMMAGHWLVRTMMDFFLEMVHLIPS 86
>gi|22124445|ref|NP_667868.1| type III secretion system component [Yersinia pestis KIM 10]
gi|153949767|ref|YP_001402767.1| HrpO family type III secretion protein [Yersinia
pseudotuberculosis IP 31758]
gi|162419851|ref|YP_001608227.1| HrpO family type III secretion protein [Yersinia pestis Angola]
gi|167402190|ref|ZP_02307663.1| type III secretion protein, HrpO family [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|21957232|gb|AAM84119.1|AE013654_8 putative type III secretion system component [Yersinia pestis KIM
10]
gi|152961262|gb|ABS48723.1| type III secretion protein, HrpO family [Yersinia
pseudotuberculosis IP 31758]
gi|162352666|gb|ABX86614.1| type III secretion protein, HrpO family [Yersinia pestis Angola]
gi|167048371|gb|EDR59779.1| type III secretion protein, HrpO family [Yersinia pestis biovar
Antiqua str. UG05-0454]
Length = 93
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 52/83 (62%)
Query: 4 ADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLI 63
A ++ +A +W +L S PV+ A +G++I+ +QALTQIQ+ TL F+ K++AV TL+
Sbjct: 8 AIIVHLATELLWLVLLLSLPVVVVASTVGLVISLVQALTQIQDQTLQFLIKLLAVSATLL 67
Query: 64 ISAPFIGGQISSFVTLVLSRIQS 86
++ ++G + ++ +I S
Sbjct: 68 MTYHWMGATLLNYTQQSFLQITS 90
>gi|66044458|ref|YP_234299.1| type III secretion protein HrcS [Pseudomonas syringae pv.
syringae B728a]
gi|63255165|gb|AAY36261.1| type III secretion protein HrcS [Pseudomonas syringae pv.
syringae B728a]
gi|330969105|gb|EGH69171.1| type III secretion protein HrcS [Pseudomonas syringae pv. aceris
str. M302273PT]
Length = 88
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 49/83 (59%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
+ L + + M+ ++ +AP L A+ +G++ + LQAL QIQ+ TL F K+ AV +TL +
Sbjct: 2 EALALFKQGMFLVVILTAPPLAVAVLVGVVTSLLQALMQIQDQTLPFGIKLGAVGLTLAM 61
Query: 65 SAPFIGGQISSFVTLVLSRIQSS 87
+ +IG ++ F+ + I S
Sbjct: 62 TGRWIGVELIEFINMAFDLIARS 84
>gi|15643460|ref|NP_228506.1| flagellar biosynthesis protein FliQ [Thermotoga maritima MSB8]
gi|148269378|ref|YP_001243838.1| flagellar biosynthetic protein FliQ [Thermotoga petrophila RKU-1]
gi|170288036|ref|YP_001738274.1| flagellar biosynthetic protein FliQ [Thermotoga sp. RQ2]
gi|4981220|gb|AAD35779.1|AE001741_12 flagellar biosynthesis protein FliQ [Thermotoga maritima MSB8]
gi|147734922|gb|ABQ46262.1| flagellar biosynthetic protein FliQ [Thermotoga petrophila RKU-1]
gi|170175539|gb|ACB08591.1| flagellar biosynthetic protein FliQ [Thermotoga sp. RQ2]
Length = 88
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 49/83 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M L+I ++ + +L P L ++ +G++I+ QA+TQI E TL F P+II +F+
Sbjct: 1 MTIEVFLDIMKSGISLLLEIIVPPLVVSLIVGLVISIFQAVTQIHEQTLMFAPRIIVLFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSR 83
T++ + ++ +I F + +L +
Sbjct: 61 TILFLSGWMAQKILDFFSEMLQK 83
>gi|289523555|ref|ZP_06440409.1| flagellar biosynthetic protein FliQ [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
gi|289503247|gb|EFD24411.1| flagellar biosynthetic protein FliQ [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
Length = 68
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 40/67 (59%)
Query: 22 APVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVL 81
PVL AM +G++I LQ T IQE TL F+PKI+AVF+ L + P++ G + F +
Sbjct: 1 MPVLLVAMVVGLVIGILQTATSIQEQTLVFIPKILAVFLLLFLLGPWMFGHVGEFAKYLF 60
Query: 82 SRIQSSL 88
+ S +
Sbjct: 61 GNLASLV 67
>gi|328543168|ref|YP_004303277.1| flagellar biosynthesis protein Q [polymorphum gilvum SL003B-26A1]
gi|326412914|gb|ADZ69977.1| Flagellar biosynthesis protein Q [Polymorphum gilvum SL003B-26A1]
Length = 88
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 37/84 (44%), Positives = 62/84 (73%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +VL++AR +WT++ SAP++ + +G++IA QALTQIQE+TL FVPKI+A+F+
Sbjct: 1 MTGPEVLDVAREGVWTLILVSAPIMVVGLVVGVVIALFQALTQIQEMTLVFVPKILAIFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
T+I++ PF+G +++F+ + I
Sbjct: 61 TMIVTLPFMGQLLAAFMARISELI 84
>gi|107021596|ref|YP_619923.1| flagellar biosynthesis protein FliQ [Burkholderia cenocepacia AU
1054]
gi|116688060|ref|YP_833683.1| flagellar biosynthesis protein FliQ [Burkholderia cenocepacia
HI2424]
gi|161523219|ref|YP_001578231.1| flagellar biosynthesis protein FliQ [Burkholderia multivorans
ATCC 17616]
gi|170731410|ref|YP_001763357.1| flagellar biosynthesis protein FliQ [Burkholderia cenocepacia
MC0-3]
gi|189348924|ref|YP_001944552.1| flagellar biosynthesis protein FliQ [Burkholderia multivorans
ATCC 17616]
gi|221201780|ref|ZP_03574817.1| flagellar biosynthetic protein FliQ [Burkholderia multivorans
CGD2M]
gi|221207715|ref|ZP_03580723.1| flagellar biosynthetic protein FliQ [Burkholderia multivorans
CGD2]
gi|221214541|ref|ZP_03587511.1| flagellar biosynthetic protein FliQ [Burkholderia multivorans
CGD1]
gi|254246637|ref|ZP_04939958.1| Flagellar biosynthesis protein FliQ [Burkholderia cenocepacia
PC184]
gi|105891785|gb|ABF74950.1| flagellar biosynthetic protein FliQ [Burkholderia cenocepacia AU
1054]
gi|116646149|gb|ABK06790.1| flagellar biosynthetic protein FliQ [Burkholderia cenocepacia
HI2424]
gi|124871413|gb|EAY63129.1| Flagellar biosynthesis protein FliQ [Burkholderia cenocepacia
PC184]
gi|160340648|gb|ABX13734.1| flagellar biosynthetic protein FliQ [Burkholderia multivorans
ATCC 17616]
gi|169814652|gb|ACA89235.1| flagellar biosynthetic protein FliQ [Burkholderia cenocepacia
MC0-3]
gi|189332946|dbj|BAG42016.1| flagellar biosynthetic protein [Burkholderia multivorans ATCC
17616]
gi|221165431|gb|EED97907.1| flagellar biosynthetic protein FliQ [Burkholderia multivorans
CGD1]
gi|221172561|gb|EEE05000.1| flagellar biosynthetic protein FliQ [Burkholderia multivorans
CGD2]
gi|221178200|gb|EEE10610.1| flagellar biosynthetic protein FliQ [Burkholderia multivorans
CGD2M]
gi|325525521|gb|EGD03320.1| flagellar biosynthesis protein FliQ [Burkholderia sp. TJI49]
Length = 90
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 52/86 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ +A AM L +AP+L A+ +G++++ QA TQI E TL+F+PK++AV
Sbjct: 1 MTPEQVMTLAHQAMMVGLLLAAPLLLVALAVGLVVSLFQAATQINEATLSFIPKLLAVAA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
TL+I+ P++ + ++ L + +
Sbjct: 61 TLVIAGPWMLTTMLDYLRQTLLHVAT 86
>gi|315140237|gb|ADT81110.1| RscS [Pseudomonas fluorescens]
gi|321399626|emb|CBJ44635.1| putative type III secretion system protein HrcS [Pseudomonas sp.
MTE-48-204]
gi|321399630|emb|CBJ44638.1| putative type III secretion system protein HrcS [Pseudomonas sp.
MTE-48-205]
Length = 88
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 48/82 (58%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
+ LE+ + M+ ++ +AP L A+ +G+L + +QAL QIQ+ TL F K++AV +TL
Sbjct: 2 EALELFKQGMYLVVILTAPPLLVAVLVGVLTSLVQALMQIQDQTLPFGIKLVAVGVTLAA 61
Query: 65 SAPFIGGQISSFVTLVLSRIQS 86
+ +IG ++ F+ I
Sbjct: 62 TGRWIGVELILFINTAFDLIAR 83
>gi|323388137|gb|ADX60333.1| type III secretion protein RscS [Pseudomonas fluorescens]
Length = 87
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 49/81 (60%)
Query: 7 LEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISA 66
+ + + M ++ SAP L A+ +G+L + +QAL QIQ+ TL F K++AV ITLI++
Sbjct: 4 IVLFKQGMLLVVVLSAPPLIVAVVVGVLTSLVQALMQIQDQTLPFGIKLVAVGITLILTG 63
Query: 67 PFIGGQISSFVTLVLSRIQSS 87
+IG ++ + L+ I S
Sbjct: 64 RWIGVELIQLINLMFDMIARS 84
>gi|149912832|ref|ZP_01901366.1| flagellar biosynthetic protein FliQ [Roseobacter sp. AzwK-3b]
gi|149813238|gb|EDM73064.1| flagellar biosynthetic protein FliQ [Roseobacter sp. AzwK-3b]
Length = 89
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 44/78 (56%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
++E + R +W L S P+L A+ G+++ QALT IQE+TLTFVPK+ A+ +
Sbjct: 2 LDEVVFFDTMREGLWVSLIISVPILTMALLAGLIVGLFQALTSIQELTLTFVPKLGAIVL 61
Query: 61 TLIISAPFIGGQISSFVT 78
+S F+ + SF
Sbjct: 62 VFWLSMGFMTQTLVSFFQ 79
>gi|71278547|ref|YP_268255.1| flagellar biosynthetic protein FliQ [Colwellia psychrerythraea
34H]
gi|71144287|gb|AAZ24760.1| flagellar biosynthetic protein FliQ [Colwellia psychrerythraea
34H]
Length = 89
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 46/86 (53%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +++ A+ ++ ++ ++ +G+++A QA T I E TL+F+P++I +
Sbjct: 1 MGPEIYVDMLGDALLLVIILVCAIILPSLAVGLMVAVFQAATSINEQTLSFLPRLIVTLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
LII ++ ++ + +++ I S
Sbjct: 61 ALIIGGHWLVQKVMDYTIRLIASIPS 86
>gi|103488402|ref|YP_617963.1| flagellar biosynthetic protein FliQ [Sphingopyxis alaskensis
RB2256]
gi|98978479|gb|ABF54630.1| flagellar biosynthetic protein FliQ [Sphingopyxis alaskensis
RB2256]
Length = 89
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 49/88 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + +A+ ++W + +SAP+L + +G+L+ +QA T I E TLTFVPK+I I
Sbjct: 1 METDYFIGMAQQSLWILALASAPLLLPVLIVGVLLGMVQAATSINEQTLTFVPKLIVAAI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L I I ++ F + ++I + +
Sbjct: 61 CLAIFGGSILVLLTDFTRDLFAQIPALV 88
>gi|222100862|ref|YP_002535430.1| Flagellar biosynthetic protein FliQ [Thermotoga neapolitana DSM
4359]
gi|221573252|gb|ACM24064.1| Flagellar biosynthetic protein FliQ [Thermotoga neapolitana DSM
4359]
Length = 91
Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 49/83 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
+ L+I ++ + IL P L ++ +G++I+ QA+TQI E TL F P++I +F+
Sbjct: 4 LTIEVFLDIMKSGIGLILEIIVPPLVVSLIVGLIISIFQAVTQIHEQTLMFAPRVIVMFL 63
Query: 61 TLIISAPFIGGQISSFVTLVLSR 83
TL+ + ++ +I F T +L R
Sbjct: 64 TLLFLSGWMAQKILDFFTELLQR 86
>gi|91795012|ref|YP_564663.1| export protein FliQ [Shewanella denitrificans OS217]
gi|91717014|gb|ABE56940.1| export protein FliQ, family 3 [Shewanella denitrificans OS217]
Length = 89
Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 45/86 (52%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ ++ I AM+ ++ ++ + LG++IA QA TQ+ E TL+F+PK+I +
Sbjct: 1 MDTNELTVIFADAMYLVIIMVGVLITPGLILGVVIAVFQAATQVNEQTLSFLPKLILTLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
++ S ++ ++S + I
Sbjct: 61 MVLFSGSWLIQKLSDLFEQLFLNIPH 86
>gi|296274403|ref|YP_003657034.1| export protein FliQ family 3 [Arcobacter nitrofigilis DSM 7299]
gi|296098577|gb|ADG94527.1| export protein FliQ family 3 [Arcobacter nitrofigilis DSM 7299]
Length = 90
Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/80 (38%), Positives = 53/80 (66%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
D++ IA++ + IL + P L +M +G+LI+ QA+TQI + L+FVPK+I V I ++I
Sbjct: 4 DLMGIAQSTVKIILLLALPSLLVSMVIGLLISVFQAVTQISDAALSFVPKVIFVSIFILI 63
Query: 65 SAPFIGGQISSFVTLVLSRI 84
S P+IG +S++ + + I
Sbjct: 64 SLPWIGDNVSTYTKELWNMI 83
>gi|829081|dbj|BAA09163.1| ORF23 [Shigella sonnei]
Length = 80
Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 45/80 (56%)
Query: 9 IARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPF 68
+ A++ IL S + A +G+ I LQ +TQ+QE TL F K+I V I+L++ + +
Sbjct: 1 MGNKALYLILIFSLWPVGIATVIGLSIGLLQTVTQLQEQTLPFGIKLIGVSISLLLLSGW 60
Query: 69 IGGQISSFVTLVLSRIQSSL 88
G + SF ++ I+S +
Sbjct: 61 YGEVLLSFCHEIMFLIKSGV 80
>gi|307945002|ref|ZP_07660339.1| flagellar biosynthetic protein FliQ [Roseibium sp. TrichSKD4]
gi|307771926|gb|EFO31150.1| flagellar biosynthetic protein FliQ [Roseibium sp. TrichSKD4]
Length = 146
Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 41/78 (52%)
Query: 9 IARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPF 68
+ + + I+ S P+L A +G++I+ Q LTQIQE TL + KI+AV +++
Sbjct: 68 LIESTIALIVEVSVPILAVATIVGLVISIFQVLTQIQEQTLPQIAKIVAVIAFILLFGSV 127
Query: 69 IGGQISSFVTLVLSRIQS 86
+ F+ +L + S
Sbjct: 128 SAVKFVVFMETMLEGVAS 145
>gi|154173912|ref|YP_001409021.1| flagellar biosynthesis protein FliQ [Campylobacter curvus 525.92]
gi|112804012|gb|EAU01356.1| flagellar biosynthetic protein FliQ [Campylobacter curvus 525.92]
Length = 88
Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 46/86 (53%)
Query: 3 EADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITL 62
++ ++ + L S P+L S + G++I+ QA TQI E TL+FVPKII V + +
Sbjct: 2 QSTLVALGIETFKVALYLSLPMLLSGLIAGLIISIFQATTQINETTLSFVPKIILVVVVI 61
Query: 63 IISAPFIGGQISSFVTLVLSRIQSSL 88
I P++ + F T ++ I +
Sbjct: 62 IFLMPWMVSMMVEFTTRMIDYIPEFI 87
>gi|218554529|ref|YP_002387442.1| flagellar biosynthesis protein FliQ [Escherichia coli IAI1]
gi|256017858|ref|ZP_05431723.1| flagellar biosynthesis protein FliQ [Shigella sp. D9]
gi|332278884|ref|ZP_08391297.1| flagellar biosynthesis protein [Shigella sp. D9]
gi|218361297|emb|CAQ98881.1| flagellar biosynthesis protein [Escherichia coli IAI1]
gi|332101236|gb|EGJ04582.1| flagellar biosynthesis protein [Shigella sp. D9]
Length = 89
Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/85 (38%), Positives = 55/85 (64%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + AM L+ +AP+L A+ G++I+ LQA TQI E+TL+F+PKIIAVFI
Sbjct: 1 MTPESVMMMGTEAMKVALALAAPLLLVALVTGLIISILQAATQINEMTLSFIPKIIAVFI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
+II+ P++ + +V+ + + +
Sbjct: 61 AIIIAGPWMLNLLLDYVSTLFTNLP 85
>gi|217422567|ref|ZP_03454070.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 576]
gi|217394798|gb|EEC34817.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 576]
Length = 87
Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 46/82 (56%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M D++ + M L S PV+ A G+ I+FLQA+T +QE ++++ K++AV +
Sbjct: 1 MEIDDLIRLTSQGMMLCLYISLPVVLVAAASGLAISFLQAITSLQEQSISYGVKLVAVTV 60
Query: 61 TLIISAPFIGGQISSFVTLVLS 82
+ I+ P+ +I F ++S
Sbjct: 61 IVAIAGPWAAAEILHFAQQLMS 82
>gi|293395592|ref|ZP_06639875.1| flagellar biosynthetic protein FliQ [Serratia odorifera DSM 4582]
gi|291421911|gb|EFE95157.1| flagellar biosynthetic protein FliQ [Serratia odorifera DSM 4582]
Length = 83
Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 55/82 (67%)
Query: 7 LEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISA 66
+ + AM L+ +AP+L +A+ G++++ LQA TQI E+TL+F+PKI+AV T+II+
Sbjct: 1 MALGTEAMKVALALAAPLLLAALISGLVVSLLQAATQINEMTLSFIPKILAVVATIIIAG 60
Query: 67 PFIGGQISSFVTLVLSRIQSSL 88
P++ + ++ ++ S + + +
Sbjct: 61 PWMLNLLLDYMRMLFSNLPNLI 82
>gi|85060035|ref|YP_455737.1| flagellar biosynthesis protein FliQ [Sodalis glossinidius str.
'morsitans']
gi|84780555|dbj|BAE75332.1| flagellar biosynthetic protein FliQ [Sodalis glossinidius str.
'morsitans']
Length = 89
Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 54/85 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + M L+ +AP+L +A+F G++I+ LQA TQ+ E+TL+F+PKI+AV
Sbjct: 1 MTPESVMALGHEGMLIALALAAPLLLAALFSGLIISLLQAATQVNEMTLSFIPKILAVVA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
T+ ++ P++ I ++ +L+ +
Sbjct: 61 TITLAGPWMLNLILDYMRTLLTNLP 85
>gi|134294169|ref|YP_001117904.1| flagellar biosynthesis protein FliQ [Burkholderia vietnamiensis
G4]
gi|134137326|gb|ABO53069.1| flagellar biosynthetic protein FliQ [Burkholderia vietnamiensis
G4]
Length = 90
Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 53/86 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ +A AM L +AP+L A+ +G++++ QA TQI E TL+F+PK++AV
Sbjct: 1 MTPEQVMTLAHHAMMVGLLLAAPLLLVALAVGLVVSLFQAATQINESTLSFIPKLLAVAA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
TL+I+ P++ + ++ L ++ +
Sbjct: 61 TLVIAGPWMLTTMLDYLRQTLLQVAT 86
>gi|317051544|ref|YP_004112660.1| flagellar biosynthetic protein FliQ [Desulfurispirillum indicum
S5]
gi|316946628|gb|ADU66104.1| flagellar biosynthetic protein FliQ [Desulfurispirillum indicum
S5]
Length = 89
Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 54/88 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ V E+ ++ L ++P+L + +G+ I+ +QA T +QE+TLTF+PKI+ V +
Sbjct: 1 MSPEFVTELLVNSLILALMIASPMLVLGLIVGVAISIVQAATSVQEMTLTFIPKIVIVVL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L+ P++ ++++F +++ + ++
Sbjct: 61 GLMYFLPWMIAKLTAFTINLITNMPQAI 88
>gi|212637762|ref|YP_002314287.1| flagellar biosynthesis protein FliQ [Shewanella piezotolerans
WP3]
gi|212559246|gb|ACJ31700.1| Flagellar biosynthesis protein FliQ [Shewanella piezotolerans
WP3]
Length = 89
Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 46/86 (53%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ ++ + A++ +++ ++ + +G+LIA QA TQ+ E TL+F+P+++ +
Sbjct: 1 MDVNELTSMFAEAIFLVVAMVGVLVVPGLLVGLLIAVFQAATQVNEQTLSFLPRLVLTLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
++ + ++ QIS + I
Sbjct: 61 MVLFAGEWLLQQISDLFQRLFLNIPH 86
>gi|212709501|ref|ZP_03317629.1| hypothetical protein PROVALCAL_00543 [Providencia alcalifaciens
DSM 30120]
gi|212687839|gb|EEB47367.1| hypothetical protein PROVALCAL_00543 [Providencia alcalifaciens
DSM 30120]
Length = 89
Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 53/85 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + AM L +AP+L +A+ G++I+ LQA TQ+ E+TL+F+PKI++V
Sbjct: 1 MTPESVMAMGTEAMKIALMLAAPLLLAALAAGLIISLLQAATQVNEMTLSFIPKILSVIS 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
LII+ P++ ++ ++ + S +
Sbjct: 61 VLIIAGPWMLNLLTDYIRTLFSNLP 85
>gi|226225723|ref|YP_002759829.1| flagellar biosynthetic protein FliQ [Gemmatimonas aurantiaca
T-27]
gi|226088914|dbj|BAH37359.1| flagellar biosynthetic protein FliQ [Gemmatimonas aurantiaca
T-27]
Length = 89
Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 55/88 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ V+++ R A+ T L SAP+L A+ +G++IA +Q++TQIQE TL FVPK+I V
Sbjct: 1 MSHQIVIDLTRDAIMTALMVSAPLLLLALGVGLIIAIIQSVTQIQEQTLVFVPKLILVGG 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
I+ P++ + F T ++ I + +
Sbjct: 61 AFIVGLPWLMQIMIKFTTQIIRGIPAMV 88
>gi|229588262|ref|YP_002870381.1| putative type III secretion membrane protein [Pseudomonas
fluorescens SBW25]
gi|15042143|gb|AAK81924.1|AF292566_8 RscS [Pseudomonas fluorescens]
gi|229360128|emb|CAY46985.1| putative type III secretion membrane protein [Pseudomonas
fluorescens SBW25]
Length = 87
Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 48/81 (59%)
Query: 7 LEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISA 66
+ + + M ++ SAP L A+ +G++ + +QAL Q+Q+ TL F K++AV ITLI++
Sbjct: 4 IVLFKQGMLLVVVLSAPPLLVAVVVGVMTSLVQALMQVQDQTLPFGIKLVAVGITLIMTG 63
Query: 67 PFIGGQISSFVTLVLSRIQSS 87
+IG ++ + L I S
Sbjct: 64 RWIGVELIQLINLTFDMIGRS 84
>gi|206561839|ref|YP_002232604.1| flagellar biosynthesis protein FliQ [Burkholderia cenocepacia
J2315]
gi|198037881|emb|CAR53825.1| flagellar biosynthetic protein FliQ [Burkholderia cenocepacia
J2315]
Length = 90
Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 52/86 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ +A AM L +AP+L A+ +G++++ QA TQI E TL+F+PK++AV
Sbjct: 1 MTPEQVMTLAHQAMMVGLLLAAPLLLVALAVGLVVSLFQAATQINEATLSFIPKLLAVAA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
TL+I+ P++ + ++ L + +
Sbjct: 61 TLVIAGPWMLTTMLDYLRQTLLHVAT 86
>gi|51587299|emb|CAE53679.1| putative HrcS [Pseudomonas fluorescens bv. V]
Length = 87
Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 49/81 (60%)
Query: 7 LEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISA 66
+ + + M ++ SAP L A+ +G+L + +QAL QIQ+ TL F K++AV ITL+++
Sbjct: 4 IVLFKQGMLLVVVLSAPPLIVAVIVGVLTSLVQALMQIQDQTLPFGIKLVAVGITLVLTG 63
Query: 67 PFIGGQISSFVTLVLSRIQSS 87
+IG ++ + L+ I S
Sbjct: 64 RWIGLELIQLINLMFDMIARS 84
>gi|12331291|emb|CAC24707.1| HrcS protein [Pseudomonas fluorescens]
Length = 88
Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 49/83 (59%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
+ L + + M+ ++ +AP L A+ +G++ + LQAL QIQ+ TL F K+ AV +TL +
Sbjct: 2 EALALFKQGMFLVVILTAPPLGVAVLVGVVTSLLQALMQIQDQTLPFGIKLGAVGLTLAL 61
Query: 65 SAPFIGGQISSFVTLVLSRIQSS 87
+ +IG ++ F+ + I S
Sbjct: 62 TGRWIGVELIQFINMAFDLIARS 84
>gi|254251035|ref|ZP_04944353.1| Flagellar biosynthesis pathway component FliQ [Burkholderia
dolosa AUO158]
gi|124893644|gb|EAY67524.1| Flagellar biosynthesis pathway component FliQ [Burkholderia
dolosa AUO158]
Length = 90
Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 52/86 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ +A AM L +AP+L A+ +G++++ QA TQI E TL+F+PK++AV
Sbjct: 1 MTPEQVMTLAHQAMMVGLLLAAPLLLVALAVGLVVSLFQAATQINEATLSFIPKLLAVAA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
TL+I+ P++ + ++ L + +
Sbjct: 61 TLVIAGPWMMTTMLDYLRQTLLHVAT 86
>gi|238764053|ref|ZP_04625008.1| Secretion system apparatus protein ssaS [Yersinia kristensenii
ATCC 33638]
gi|238697724|gb|EEP90486.1| Secretion system apparatus protein ssaS [Yersinia kristensenii
ATCC 33638]
Length = 89
Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 54/86 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ A V+ +A +W +L S PV+ A +G++++ LQALTQIQ+ TL F+ K++AV
Sbjct: 1 MSTAIVVHLATQLLWIVLLLSMPVVVVASVVGLVVSLLQALTQIQDQTLQFLIKLLAVSA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
TL+I+ ++G + ++ +I S
Sbjct: 61 TLLITYHWMGSTLLNYTQQTFLQITS 86
>gi|302670737|ref|YP_003830697.1| flagellar biosynthetic protein FliQ [Butyrivibrio proteoclasticus
B316]
gi|302395210|gb|ADL34115.1| flagellar biosynthetic protein FliQ [Butyrivibrio proteoclasticus
B316]
Length = 90
Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 54/81 (66%)
Query: 2 NEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFIT 61
D+ EI +A++ ++ S PVL ++M +G++I+ Q +T IQE TLTFVPK++ VF+
Sbjct: 3 TIGDINEIISSALFMVIKMSLPVLLTSMIIGLVISIFQTVTSIQEQTLTFVPKVLGVFVM 62
Query: 62 LIISAPFIGGQISSFVTLVLS 82
++I ++ +++ F+T + S
Sbjct: 63 IMILGNWMATELAGFITTLWS 83
>gi|82470757|gb|ABB77409.1| HrcS [Pantoea stewartii subsp. stewartii]
Length = 86
Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 49/81 (60%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
+++ + + AM ++ SAP L A+ +G+L++ LQA+ Q+Q+ TL F K++AV I L +
Sbjct: 2 EIMNLFKQAMLLVVLLSAPPLLVAVIVGVLVSLLQAVMQLQDQTLPFAIKLVAVGIALAL 61
Query: 65 SAPFIGGQISSFVTLVLSRIQ 85
S +IG ++ ++ I
Sbjct: 62 SGRWIGVELLELAQQAMAMIP 82
>gi|51587291|emb|CAE53673.1| putative HrcS [Pseudomonas fluorescens]
Length = 87
Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 49/81 (60%)
Query: 7 LEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISA 66
+ + + M ++ SAP L A+ +G+L + +QAL Q+Q+ TL F K++AV +TL+++
Sbjct: 4 IVLFKQGMLLVVVLSAPPLIVAVIVGVLTSLVQALMQVQDQTLPFGVKLVAVGVTLVLTG 63
Query: 67 PFIGGQISSFVTLVLSRIQSS 87
+IG ++ + L+ I S
Sbjct: 64 RWIGVELIQLINLMFEMIARS 84
>gi|332187880|ref|ZP_08389613.1| flagellar biosynthetic protein FliQ [Sphingomonas sp. S17]
gi|332012041|gb|EGI54113.1| flagellar biosynthetic protein FliQ [Sphingomonas sp. S17]
Length = 89
Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 49/88 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ L +A MW + ++AP+L + G++I +QA T I E TL+FVPK+I V I
Sbjct: 1 MDAQYFLTLANQTMWVLALAAAPILLPVLVSGLVIGMIQAATSINEQTLSFVPKLIVVAI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+++I I G +S F + RI +
Sbjct: 61 SILIFGSMIMGLLSDFTVSMFERIPDLV 88
>gi|51587255|emb|CAE53646.1| putative HrcS [Pseudomonas salomonii]
Length = 87
Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 48/81 (59%)
Query: 7 LEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISA 66
+ + + M ++ SAP L A+ +G+L + +QAL Q+Q+ TL F K++AV ITL+++
Sbjct: 4 IVLFKQGMLLVVVLSAPPLIVAVVVGVLTSLVQALMQVQDQTLPFGIKLVAVGITLVMTG 63
Query: 67 PFIGGQISSFVTLVLSRIQSS 87
+IG ++ + L I S
Sbjct: 64 RWIGVELIQLINLTFEMISRS 84
>gi|183598643|ref|ZP_02960136.1| hypothetical protein PROSTU_02047 [Providencia stuartii ATCC
25827]
gi|188020826|gb|EDU58866.1| hypothetical protein PROSTU_02047 [Providencia stuartii ATCC
25827]
Length = 89
Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 51/85 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + AM L +AP+L +A+ G+ I+ LQA TQ+ E+TL+F+PKI++V
Sbjct: 1 MTPESVMALGTEAMKIALMLAAPLLLAALVAGLTISLLQAATQVNEMTLSFIPKILSVIA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
+II+ P++ + ++ + S +
Sbjct: 61 VIIIAGPWMLNLLLDYMRTLFSNLP 85
>gi|321399654|emb|CBJ44656.1| putative type III secretion system protein HrcS [Pseudomonas sp.
MTR-J5-327]
Length = 88
Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 48/82 (58%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
+ LE+ + M+ + +AP L A+ +G+L + +QAL QIQ+ TL F K++AV +TL
Sbjct: 2 EALELFKQGMYLAVILTAPPLLVAVLVGVLTSLVQALMQIQDQTLPFGIKLVAVGVTLAA 61
Query: 65 SAPFIGGQISSFVTLVLSRIQS 86
+ +IG ++ F+ + I
Sbjct: 62 TGRWIGVELILFINMAFDLIAR 83
>gi|289678000|ref|ZP_06498890.1| type III secretion component protein HrcS [Pseudomonas syringae
pv. syringae FF5]
gi|818892|gb|AAB05076.1| HrpO [Pseudomonas syringae pv. syringae]
gi|51587247|emb|CAE53640.1| putative HrcS [Pseudomonas syringae pv. syringae]
gi|148562541|gb|ABQ88360.1| HrcS [Pseudomonas syringae pv. syringae]
gi|330937036|gb|EGH41124.1| type III secretion component protein HrcS [Pseudomonas syringae
pv. pisi str. 1704B]
gi|330950825|gb|EGH51085.1| type III secretion component protein HrcS [Pseudomonas syringae
Cit 7]
gi|330975863|gb|EGH75929.1| type III secretion component protein HrcS [Pseudomonas syringae
pv. aptata str. DSM 50252]
Length = 88
Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 49/83 (59%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
+ L + + M+ ++ +AP L A+ +G++ + LQAL QIQ+ TL F K+ AV +TL +
Sbjct: 2 EALALFKQGMFLVVILTAPPLAVAVLVGVVTSLLQALMQIQDQTLPFGIKLGAVGLTLAM 61
Query: 65 SAPFIGGQISSFVTLVLSRIQSS 87
+ +IG ++ F+ + I S
Sbjct: 62 TGRWIGVELIQFINMAFDLIARS 84
>gi|260574403|ref|ZP_05842407.1| export protein FliQ family 3 [Rhodobacter sp. SW2]
gi|259023299|gb|EEW26591.1| export protein FliQ family 3 [Rhodobacter sp. SW2]
Length = 88
Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 48/81 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M E+++ + R +W + SAP+L A+ G+++ QALT +QE+TLTFVPK+ A+ +
Sbjct: 1 MTESEIYDTLRQGLWIAVLISAPLLTVALVAGVVVGLFQALTSVQEMTLTFVPKVGAMLV 60
Query: 61 TLIISAPFIGGQISSFVTLVL 81
+S F+ + F + +
Sbjct: 61 VFWVSMSFMTSTLVGFFSETI 81
>gi|51587303|emb|CAE53682.1| putative HrcS [Pseudomonas fluorescens]
Length = 87
Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 49/83 (59%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
D + + + M ++ SAP L A+ +G+L + +QAL QIQ+ TL F K++AV ITL++
Sbjct: 2 DPIMLFKQGMLLVVVLSAPPLIVAVIVGVLTSLIQALMQIQDQTLPFGIKLVAVGITLVL 61
Query: 65 SAPFIGGQISSFVTLVLSRIQSS 87
+ +IG ++ + L + S
Sbjct: 62 TGRWIGLELIQLINLTFDMVARS 84
>gi|157959920|ref|YP_001499954.1| flagellar biosynthetic protein FliQ [Shewanella pealeana ATCC
700345]
gi|157844920|gb|ABV85419.1| flagellar biosynthetic protein FliQ [Shewanella pealeana ATCC
700345]
Length = 89
Score = 52.2 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/88 (18%), Positives = 47/88 (53%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ ++ A++ +++ ++ ++ +G+++A QA TQ+ E TL+F+P+++ +
Sbjct: 1 MDVNELTSFFADAVFLVIAMVGVLVLPSLLVGLVVAVFQAATQVNEQTLSFLPRLVITLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
++ + ++ Q+S + I +
Sbjct: 61 MVLFAGEWMLMQMSDLFQRLFLNIPHLI 88
>gi|321399837|emb|CBJ44674.1| putative type III secretion system protein HrcS [Pseudomonas sp.
MTR-J5-721]
Length = 88
Score = 52.2 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 49/82 (59%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
+ LE+ + M+ ++ +AP L A+ +G+L + +QAL QIQ+ TL F K++AV +TL
Sbjct: 2 EALELFKQGMYLVVILTAPPLLVAVLVGVLTSLVQALMQIQDQTLPFGIKLVAVGVTLAA 61
Query: 65 SAPFIGGQISSFVTLVLSRIQS 86
+ +IG ++ F+ + I
Sbjct: 62 TGRWIGVELILFINMAFDLIAR 83
>gi|291286236|ref|YP_003503052.1| flagellar biosynthetic protein FliQ [Denitrovibrio acetiphilus
DSM 12809]
gi|290883396|gb|ADD67096.1| flagellar biosynthetic protein FliQ [Denitrovibrio acetiphilus
DSM 12809]
Length = 90
Score = 52.2 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 55/88 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ V+++ A+ L +AP+L + +G+LI+ Q++TQIQE+TLTF+PKII V +
Sbjct: 1 MSADLVIDMLVQALQLSLLVAAPMLGIGLIIGLLISIFQSVTQIQEMTLTFIPKIIGVVV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+++ AP++ ++ + + + + +
Sbjct: 61 AVMVFAPWMVDKMMVYTINLFTNLGQYI 88
>gi|149184189|ref|ZP_01862507.1| flagellar biosynthetic protein [Erythrobacter sp. SD-21]
gi|148831509|gb|EDL49942.1| flagellar biosynthetic protein [Erythrobacter sp. SD-21]
Length = 90
Score = 52.2 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 47/84 (55%)
Query: 3 EADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITL 62
A +L +A +W +APVL +++ +G++I +QA T + E TLTFVPK+ AV +
Sbjct: 4 SAVLLSLADRMLWIAAMVAAPVLIASLAIGLVIGLIQAATSVNEQTLTFVPKLAAVAFVM 63
Query: 63 IISAPFIGGQISSFVTLVLSRIQS 86
++ + G + F+ + + I
Sbjct: 64 VVLGASMMGLVIDFMNDIFAEIAR 87
>gi|306841282|ref|ZP_07473993.1| flagellar biosynthesis protein FliQ [Brucella sp. BO2]
gi|306288684|gb|EFM60015.1| flagellar biosynthesis protein FliQ [Brucella sp. BO2]
Length = 72
Score = 52.2 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 53/72 (73%)
Query: 17 ILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSF 76
+L++S P + +AM GI IA QALTQIQE+TLTFVPKII +F+ L ++APF+G QI++F
Sbjct: 1 MLTASGPAVLAAMLAGIGIALFQALTQIQEMTLTFVPKIIVIFVVLALTAPFVGAQINAF 60
Query: 77 VTLVLSRIQSSL 88
L SRI+
Sbjct: 61 TLLAYSRIEKGF 72
>gi|251772431|gb|EES52998.1| flagellar biosynthetic protein FliQ [Leptospirillum
ferrodiazotrophum]
Length = 89
Score = 52.2 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 49/88 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +++ AM L + P+L ++ +G++++ LQA+TQI E+TL+F+PK+ AV
Sbjct: 1 MEIQTAVDLTHEAMRIALVITLPILLVSLVVGVVVSLLQAVTQINEMTLSFLPKVAAVGG 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L+ P++ + + V + + +
Sbjct: 61 VLLALMPWMVRLMVDYTHDVFASLPGLV 88
>gi|58039959|ref|YP_191923.1| flagellar biosynthetic protein FliQ [Gluconobacter oxydans 621H]
gi|58002373|gb|AAW61267.1| Flagellar biosynthetic protein FliQ [Gluconobacter oxydans 621H]
Length = 90
Score = 52.2 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 49/84 (58%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M D+ I L SAP L +A+ +G+L++ +QA+TQ+ E TL+FVPK++A+
Sbjct: 1 MQAIDLGAILEQTFLVALKLSAPALLTALGVGLLVSLVQAVTQLNEATLSFVPKVLAIGA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
++++ F+ + SF + ++
Sbjct: 61 VMVMAGSFMTATLISFTRHLFDQL 84
>gi|167588262|ref|ZP_02380650.1| type III secretion protein, HrpO family [Burkholderia ubonensis
Bu]
Length = 92
Score = 52.2 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 51/84 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + +L++ R A+ +L S P++ A G+++A LQA+TQ+Q+ L ++IAV +
Sbjct: 1 MTGSTILDLTRQALMLVLLLSLPIVAIATVTGLVVAILQAVTQVQDANLGMAVRLIAVMV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
L++ + ++GG++ F L R+
Sbjct: 61 ALVLLSGWLGGEVLRFAQQALERM 84
>gi|51587263|emb|CAE53652.1| putative HrcS [Pseudomonas blatchfordae]
Length = 87
Score = 52.2 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 48/81 (59%)
Query: 7 LEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISA 66
+ + + M ++ +AP L A+ +G+L + +QAL Q+Q+ TL F K++AV ITLI++
Sbjct: 4 IVLFKQGMLLVVMLTAPPLIVAVVVGVLTSLVQALMQVQDQTLPFGIKLVAVGITLIMTG 63
Query: 67 PFIGGQISSFVTLVLSRIQSS 87
+IG ++ + + I S
Sbjct: 64 RWIGVELVQLMNVTFDMIGRS 84
>gi|51587323|emb|CAE53697.1| putative HrcS [Pseudomonas sp. CFBP 11402]
Length = 87
Score = 52.2 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 47/81 (58%)
Query: 7 LEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISA 66
+ + + M ++ SAP L A+ +G+L + +QAL QIQ TL F K++AV +TLI++
Sbjct: 4 IVLFKQGMLLVVVLSAPPLIVAVVVGVLTSLVQALMQIQGQTLPFGIKLVAVGVTLILTG 63
Query: 67 PFIGGQISSFVTLVLSRIQSS 87
+IG ++ + L I S
Sbjct: 64 RWIGVELIQLINLTFEMIGRS 84
>gi|170744549|ref|YP_001773204.1| flagellar biosynthesis protein FliQ [Methylobacterium sp. 4-46]
gi|168198823|gb|ACA20770.1| export protein FliQ family 3 [Methylobacterium sp. 4-46]
Length = 88
Score = 52.2 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 44/88 (50%), Positives = 60/88 (68%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNE D LE+ RAA+WTIL + P + +AM +GI +A LQALTQIQEVTLTFVPKI+ + +
Sbjct: 1 MNEVDALELVRAAIWTILIGAGPAVAAAMAVGIAVALLQALTQIQEVTLTFVPKIVVILL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
++++ F+G Q+ F RI S
Sbjct: 61 VMLMTGSFVGTQLYMFTENAYGRITSGF 88
>gi|307720025|ref|YP_003891165.1| flagellar biosynthetic protein FliQ [Sulfurimonas autotrophica
DSM 16294]
gi|306978118|gb|ADN08153.1| flagellar biosynthetic protein FliQ [Sulfurimonas autotrophica
DSM 16294]
Length = 88
Score = 52.2 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 49/86 (56%)
Query: 3 EADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITL 62
EA ++ + L + P L + M G+ I+ QA TQI E+TL+F+PKII V I +
Sbjct: 2 EAKLIGLGVQTFQIALYLALPALLTGMLAGLAISIFQATTQINEMTLSFIPKIIGVVIVI 61
Query: 63 IISAPFIGGQISSFVTLVLSRIQSSL 88
+++ P++ +++ F V + I + +
Sbjct: 62 VLTMPWMLNEMTDFSIGVFNMIPTFV 87
>gi|187934309|ref|YP_001885057.1| flagellar biosynthetic protein FliQ [Clostridium botulinum B str.
Eklund 17B]
gi|187722462|gb|ACD23683.1| flagellar biosynthetic protein FliQ [Clostridium botulinum B str.
Eklund 17B]
Length = 89
Score = 52.2 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 49/84 (58%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M++A + + + + + +AP+L + +G+LI+ +QA TQIQE TLTFVPK+IA I
Sbjct: 1 MSQALLNGVVKDTIIVAVKLAAPILLVVLIVGLLISIIQATTQIQEQTLTFVPKLIAGAI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
I ++ + SF T + I
Sbjct: 61 VGIFLGSWMLQTLMSFTTRIFELI 84
>gi|149908779|ref|ZP_01897439.1| flagellar biosynthetic protein [Moritella sp. PE36]
gi|149808053|gb|EDM67994.1| flagellar biosynthetic protein [Moritella sp. PE36]
Length = 89
Score = 52.2 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 47/88 (53%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + A+ TI++ + ++ + +G++++ QA TQIQE TL+F+PK+I +
Sbjct: 1 MTPEQVVSLMGLAVNTIIAMVSVLVIPGLVVGLIVSVFQAATQIQEQTLSFLPKLIVTLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+ + ++ Q+ + + I +
Sbjct: 61 MVTFAGHWLLAQVKALFDYMFLNIPGLI 88
>gi|254456846|ref|ZP_05070274.1| flagellar biosynthetic protein FliQ [Campylobacterales bacterium
GD 1]
gi|207085638|gb|EDZ62922.1| flagellar biosynthetic protein FliQ [Campylobacterales bacterium
GD 1]
Length = 88
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 49/86 (56%)
Query: 3 EADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITL 62
EA ++ + L + P L + M +G+ ++ QA TQI E+TL+F+PKII V I +
Sbjct: 2 EAKLIALGIETFKIALLLALPGLLTGMLVGLAVSIFQATTQINEMTLSFIPKIIGVVIVI 61
Query: 63 IISAPFIGGQISSFVTLVLSRIQSSL 88
I++ P++ ++ F T + + + +
Sbjct: 62 ILTMPWMLNSMTDFATNIFNMMPEFI 87
>gi|224825751|ref|ZP_03698855.1| flagellar biosynthetic protein FliQ [Lutiella nitroferrum 2002]
gi|224601975|gb|EEG08154.1| flagellar biosynthetic protein FliQ [Lutiella nitroferrum 2002]
Length = 90
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 15/88 (17%), Positives = 48/88 (54%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
+ +++ ++ +++ ++ ++ +G++++ +QA TQI E TL+F+P+++
Sbjct: 2 LTPDIAVDLVNDSLRVVVTLVVLLVLPSLIVGVVVSLIQAATQINEQTLSFLPRLLITLG 61
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
T+ ++ ++ G + F + R + +
Sbjct: 62 TIALAGHWMTGLLMDFCIDMFHRAATLV 89
>gi|224372324|ref|YP_002606696.1| flagellar biosynthesis protein FliQ [Nautilia profundicola AmH]
gi|223589746|gb|ACM93482.1| flagellar biosynthetic protein FliQ [Nautilia profundicola AmH]
Length = 88
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 52/86 (60%)
Query: 3 EADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITL 62
+++++ +A + L + P L M +G+LI+ QA TQI E+TL+FVPKI+A+ + L
Sbjct: 2 QSEIIALAVQTLKLALLLALPALLVGMIVGLLISIFQATTQINEMTLSFVPKILAIAVIL 61
Query: 63 IISAPFIGGQISSFVTLVLSRIQSSL 88
I + P++ ++ F T V I + L
Sbjct: 62 IFTMPWMLNEMIDFTTYVFKLIPTFL 87
>gi|157164876|ref|YP_001467585.1| flagellar biosynthesis protein FliQ [Campylobacter concisus
13826]
gi|112801104|gb|EAT98448.1| flagellar biosynthetic protein FliQ [Campylobacter concisus
13826]
Length = 88
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 46/86 (53%)
Query: 3 EADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITL 62
++ ++ + L S P+L S + G++I+ QA TQI E TL+FVPKI+ V + +
Sbjct: 2 QSTLVSLGVETFKIALYISLPMLLSGLIAGLIISIFQATTQINETTLSFVPKILLVVVVI 61
Query: 63 IISAPFIGGQISSFVTLVLSRIQSSL 88
I P++ + F T +L I +
Sbjct: 62 IFLMPWMISMMVEFTTRMLDFIPEFI 87
>gi|34498459|ref|NP_902674.1| flagellar biosynthetic protein FliQ [Chromobacterium violaceum
ATCC 12472]
gi|34104314|gb|AAQ60673.1| flagellar biosynthetic protein FliQ [Chromobacterium violaceum
ATCC 12472]
Length = 90
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 49/86 (56%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
+ ++I ++ +++ ++ ++ +G++++ +QA TQI E TL+F+P+++ V +
Sbjct: 2 LTPDIAVDIVNDSLRVVVTLVVLLVLPSLIVGVVVSLIQAATQINEQTLSFLPRLLIVLL 61
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
T+ ++ +I G + F + R S
Sbjct: 62 TIALAGHWITGYLMDFCVAMFQRAAS 87
>gi|326315332|ref|YP_004233004.1| type III secretion protein, HrpO family [Acidovorax avenae subsp.
avenae ATCC 19860]
gi|89111160|dbj|BAE80250.1| HrcS [Acidovorax avenae subsp. avenae]
gi|89111193|dbj|BAE80282.1| HrcS [Acidovorax avenae subsp. avenae]
gi|323372168|gb|ADX44437.1| type III secretion protein, HrpO family [Acidovorax avenae subsp.
avenae ATCC 19860]
Length = 87
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 50/82 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN +++++ A+ L S P + A +G+L+A +QA+T +Q+ +++ K+I V +
Sbjct: 1 MNHDNIVQLTSEALMLCLLLSLPAVAVAAIVGLLVALVQAVTSLQDQSISQGIKLICVTV 60
Query: 61 TLIISAPFIGGQISSFVTLVLS 82
T+ +SAP++G + F +L+
Sbjct: 61 TVAVSAPWVGSTVLQFSQRLLT 82
>gi|238752884|ref|ZP_04614349.1| Lateral flagellar export/assembly protein (FliQ-like) [Yersinia
rohdei ATCC 43380]
gi|238708923|gb|EEQ01176.1| Lateral flagellar export/assembly protein (FliQ-like) [Yersinia
rohdei ATCC 43380]
Length = 90
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 43/83 (51%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +I A + +L S + ++ G+L++ QA TQI E TL+F+P+++ +
Sbjct: 2 MTADIAGDIIAAGLHLVLIISVVAIIPSLLTGLLVSIFQATTQINEQTLSFLPRLVMTML 61
Query: 61 TLIISAPFIGGQISSFVTLVLSR 83
LI + ++ ++S F + +
Sbjct: 62 VLIFAGKWMLTKLSDFTINIFHQ 84
>gi|285018284|ref|YP_003375995.1| xanthomonas secretion apparatus protein [Xanthomonas albilineans
GPE PC73]
gi|283473502|emb|CBA16005.1| probable xanthomonas secretion apparatus protein [Xanthomonas
albilineans]
Length = 88
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 40/80 (50%)
Query: 4 ADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLI 63
++ A+ +L SAP + +A +GI + Q +TQ+QE TL F K+IAV L+
Sbjct: 2 EKIIYAVNKALVLVLLLSAPAIITATIVGIAMGLFQTVTQLQEQTLPFGVKLIAVLACLL 61
Query: 64 ISAPFIGGQISSFVTLVLSR 83
+ P++ + F V
Sbjct: 62 LLEPWMAMIVMRFAREVFRM 81
>gi|225159017|ref|ZP_03725327.1| export protein FliQ family 3 [Opitutaceae bacterium TAV2]
gi|224802396|gb|EEG20658.1| export protein FliQ family 3 [Opitutaceae bacterium TAV2]
Length = 89
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 50/86 (58%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ +++ + + L +P + + +G+L + Q++T IQE TLTF PK++A+ +
Sbjct: 1 MSSEAAIDLLKQVVLFALYVVSPFIGLMLVVGLLTSLAQSVTSIQEQTLTFAPKLVALGL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
I+ AP++ +S F + ++R+ +
Sbjct: 61 LFILLAPWLLRTLSEFAAMCIARMAT 86
>gi|28628133|gb|AAO34617.1| HrcS [Erwinia chrysanthemi]
Length = 104
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 49/81 (60%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
+ L + R AM ++ SAP L A+ +G+LI+ LQA+ Q+Q+ TL F K++AV + L +
Sbjct: 20 ETLNLFRQAMVLVVMLSAPPLLVAVVVGVLISLLQAVMQLQDQTLPFAVKLVAVGLVLAM 79
Query: 65 SAPFIGGQISSFVTLVLSRIQ 85
+ +IG ++ + + I+
Sbjct: 80 TGRWIGVELIQLAMMAFNMIE 100
>gi|126730136|ref|ZP_01745948.1| flagellar biosynthetic protein FliQ [Sagittula stellata E-37]
gi|126709516|gb|EBA08570.1| flagellar biosynthetic protein FliQ [Sagittula stellata E-37]
Length = 89
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 47/87 (54%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
+NE + R +W +S P+L +A+ G+ I LQALT IQE+TLTFVPK++A+
Sbjct: 2 LNETVFFDTLRMGLWVAAVTSVPILAAALIAGVGIGLLQALTSIQEMTLTFVPKLLAIVA 61
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
+S F+ + F + I +
Sbjct: 62 VFWMSMSFMTNTLVGFFQERILPIIAG 88
>gi|238755316|ref|ZP_04616659.1| Flagellar biosynthetic protein FliQ [Yersinia ruckeri ATCC 29473]
gi|238706452|gb|EEP98826.1| Flagellar biosynthetic protein FliQ [Yersinia ruckeri ATCC 29473]
Length = 83
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 55/82 (67%)
Query: 7 LEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISA 66
+ + AM L+ +AP+L +A+ G+L++ LQA TQI E+TL+F+PKI+AVF T++I+
Sbjct: 1 MALGTEAMKIALALAAPLLLAALISGLLVSLLQAATQINEMTLSFIPKILAVFATMVIAG 60
Query: 67 PFIGGQISSFVTLVLSRIQSSL 88
P++ I ++ + + + + +
Sbjct: 61 PWMLNLILDYMRNLFTSLPTLI 82
>gi|50121006|ref|YP_050173.1| type III secretion system protein [Pectobacterium atrosepticum
SCRI1043]
gi|42560425|gb|AAS20385.1| HrcS [Pectobacterium atrosepticum]
gi|49611532|emb|CAG74980.1| type III secretion protein [Pectobacterium atrosepticum SCRI1043]
gi|167030915|gb|ABZ05783.1| HrcS [Pectobacterium carotovorum subsp. carotovorum]
Length = 86
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 48/82 (58%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
+++ + R AM ++ SAP L A+ +G+LI+ LQA+ Q+Q+ TL F K+I+V +TL +
Sbjct: 2 EIITLFRQAMVMVVLLSAPPLLVAVIVGVLISLLQAVMQLQDQTLPFAVKLISVGLTLAL 61
Query: 65 SAPFIGGQISSFVTLVLSRIQS 86
+IG ++ + I
Sbjct: 62 CGRWIGVELMQLAITAFNMIAH 83
>gi|330953283|gb|EGH53543.1| type III secretion component [Pseudomonas syringae Cit 7]
Length = 89
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 46/85 (54%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + L + A+ T+L SAP L A+ +G+ + LQALTQIQ+ TL V K++ V +
Sbjct: 1 MGQDVFLSLMNQALMTVLLLSAPALIVAIVVGLGVGLLQALTQIQDQTLPQVVKLVGVLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
++ P + GQ++ VL
Sbjct: 61 VIVFVGPLLAGQVAELGNQVLDNFP 85
>gi|304412525|ref|ZP_07394131.1| export protein FliQ family 3 [Shewanella baltica OS183]
gi|307307184|ref|ZP_07586922.1| export protein FliQ family 3 [Shewanella baltica BA175]
gi|304349167|gb|EFM13579.1| export protein FliQ family 3 [Shewanella baltica OS183]
gi|306910423|gb|EFN40854.1| export protein FliQ family 3 [Shewanella baltica BA175]
Length = 89
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 46/86 (53%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ ++ + +M+ ++ + ++ + LG+++A QA TQ+ E TL+F+P++I +
Sbjct: 1 MDINELTSLFADSMFLVIIMVSVLVTPGLILGLIVAVFQAATQVNEQTLSFLPRLIITLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
++ S ++ Q+S + I
Sbjct: 61 MVLFSGHWLIQQLSDLFDRLFMNIPH 86
>gi|226326423|ref|ZP_03801941.1| hypothetical protein PROPEN_00271 [Proteus penneri ATCC 35198]
gi|225205206|gb|EEG87560.1| hypothetical protein PROPEN_00271 [Proteus penneri ATCC 35198]
Length = 84
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 49/77 (63%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
D++ A A++ ++ SA + A F+G++I LQ +TQ+QE TL F K+++VF+ L+I
Sbjct: 2 DMVYAANKAVYLVILLSAAPIAVATFVGLIIGLLQTITQVQEQTLPFGIKLVSVFVCLLI 61
Query: 65 SAPFIGGQISSFVTLVL 81
+ ++G +I + +L
Sbjct: 62 TMGWMGDKILVYAKEML 78
>gi|21231363|ref|NP_637280.1| flagellar biosynthesis [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66768584|ref|YP_243346.1| flagellar biosynthesis [Xanthomonas campestris pv. campestris
str. 8004]
gi|188991605|ref|YP_001903615.1| hypothetical protein xccb100_2211 [Xanthomonas campestris pv.
campestris str. B100]
gi|21113025|gb|AAM41204.1| flagellar biosynthesis [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66573916|gb|AAY49326.1| flagellar biosynthesis [Xanthomonas campestris pv. campestris
str. 8004]
gi|167733365|emb|CAP51566.1| unnamed protein product [Xanthomonas campestris pv. campestris]
Length = 89
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 45/88 (51%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ L R + T+L + P+L + + +G++I +QA TQ+ E T+ FV K +A+
Sbjct: 1 MSPEIALTELRGGLVTVLWIAGPMLLAVLVVGVVIGVVQAATQLNEPTIGFVAKAVALTA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
TL + + G + F + RI +
Sbjct: 61 TLFATGSMLLGHLVEFTIELFHRIPHLI 88
>gi|310764877|gb|ADP09827.1| flagellar biosynthetic protein [Erwinia sp. Ejp617]
Length = 83
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 45/79 (56%)
Query: 7 LEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISA 66
+ + A+ L + P+L +A+ G++I+ LQA TQI E+T+TF+PKI+ + ++
Sbjct: 1 MTLGIQAIKLGLMVAGPLLLAALATGLIISILQAATQINEMTMTFIPKILVIIGVAVVLG 60
Query: 67 PFIGGQISSFVTLVLSRIQ 85
P++ + L L+ I
Sbjct: 61 PWMMRNFIEYTRLTLTNIP 79
>gi|154249382|ref|YP_001410207.1| flagellar biosynthetic protein FliQ [Fervidobacterium nodosum
Rt17-B1]
gi|154153318|gb|ABS60550.1| flagellar biosynthetic protein FliQ [Fervidobacterium nodosum
Rt17-B1]
Length = 88
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/83 (37%), Positives = 50/83 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M L+IA+ A+ +L+ P L ++ +GILI+ QA TQI E TLTF P+II VF+
Sbjct: 1 MTLEVFLDIAKHAIQLLLTLITPPLLVSLVVGILISIFQAATQIHEQTLTFAPRIIVVFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSR 83
TL++ ++ + FV ++ +
Sbjct: 61 TLMLLFGWMIESMLEFVKDIIEK 83
>gi|260768790|ref|ZP_05877724.1| flagellar biosynthesis protein FliQ [Vibrio furnissii CIP 102972]
gi|260616820|gb|EEX42005.1| flagellar biosynthesis protein FliQ [Vibrio furnissii CIP 102972]
gi|315180493|gb|ADT87407.1| flagellar biosynthetic protein [Vibrio furnissii NCTC 11218]
Length = 89
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 18/86 (20%), Positives = 51/86 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + + A+W I++ + ++ ++ +G+++A QA+TQI E TL+F+P+++ +
Sbjct: 1 MTPEMSVTLVAHALWVIIAMVSVLIVPSLLVGLIVAVFQAVTQINEQTLSFLPRLLVTMV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
++I++ ++ ++++ + + S
Sbjct: 61 SIIVTGHWLLMKLTTLFETIFHSVPS 86
>gi|120609151|ref|YP_968829.1| HrpO family type III secretion protein [Acidovorax citrulli
AAC00-1]
gi|58700624|gb|AAW81015.1| HrcS [Acidovorax citrulli]
gi|120587615|gb|ABM31055.1| type III secretion protein, HrpO family [Acidovorax citrulli
AAC00-1]
Length = 87
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 49/82 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN +++++ A+ L S P + A +G+L+A +QA+T +Q+ ++ K+I V +
Sbjct: 1 MNHDNIVQLTSEALMLCLLLSLPAVAVAAIVGLLVALVQAVTSLQDQAISQGIKLICVTV 60
Query: 61 TLIISAPFIGGQISSFVTLVLS 82
T+ +SAP++G + F +L+
Sbjct: 61 TVAVSAPWVGSTVLQFSQRLLT 82
>gi|291562036|emb|CBL40852.1| Flagellar biosynthesis pathway, component FliQ
[butyrate-producing bacterium SS3/4]
Length = 87
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 44/87 (50%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M E +L+I A + S P L +M +G++IA QA TQI E T+TFVPK++A+ +
Sbjct: 1 MTEVQILDIMYEAFQLAMKLSLPFLLISMIVGVVIAVFQAATQINEQTMTFVPKLLAIMV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
L + + F ++ I
Sbjct: 61 LLGFLGSSMLVMLQEFFQYIVELIAKG 87
>gi|85060061|ref|YP_455763.1| type III secretion apparatus SpaQ [Sodalis glossinidius str.
'morsitans']
gi|12082758|gb|AAG48605.1|AF306650_2 SpaQ [Sodalis glossinidius]
gi|45504776|gb|AAS66866.1| SpaQ [Sodalis glossinidius]
gi|84780581|dbj|BAE75358.1| type III secretion apparatus SpaQ [Sodalis glossinidius str.
'morsitans']
Length = 86
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 38/74 (51%)
Query: 10 ARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
A++ +L +A + A +G+L+ Q + Q+QE TL F K+++V + L + + +
Sbjct: 8 GNKALYLVLMMAAGPIIVATLVGLLVGLFQTVLQLQEQTLPFGIKLLSVTLCLFLLSGWY 67
Query: 70 GGQISSFVTLVLSR 83
G + F V+
Sbjct: 68 GETLLQFSHEVIRM 81
>gi|258592487|emb|CBE68796.1| Flagellar biosynthetic protein fliQ [NC10 bacterium 'Dutch
sediment']
Length = 89
Score = 51.8 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 35/85 (41%), Positives = 55/85 (64%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN V+++ A+ IL +AP+L + + +G+LI+ LQA+T IQE TL FVPKI+ VF+
Sbjct: 1 MNPQVVIDLGSQALQLILLLAAPILAAGLIVGLLISILQAVTSIQEQTLAFVPKIVVVFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
LI+ P++ + SF T +L +
Sbjct: 61 ALILFLPWMMRTMLSFTTSLLINLP 85
>gi|227114167|ref|ZP_03827823.1| type III secretion protein [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
gi|227328490|ref|ZP_03832514.1| type III secretion protein [Pectobacterium carotovorum subsp.
carotovorum WPP14]
gi|34500878|gb|AAQ73906.1| HrcS [Pectobacterium carotovorum subsp. carotovorum]
Length = 86
Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 47/82 (57%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
+++ + R AM ++ SAP L A+ +G+LI+ LQA+ Q+Q+ TL F K+I+V + L +
Sbjct: 2 EIITLFRQAMVMVVLLSAPPLLVAVIVGVLISLLQAVMQLQDQTLPFAVKLISVGLALAL 61
Query: 65 SAPFIGGQISSFVTLVLSRIQS 86
+IG ++ + I
Sbjct: 62 CGRWIGVELMQLAITAFNMIAH 83
>gi|225849158|ref|YP_002729322.1| flagellar biosynthetic protein FliQ [Sulfurihydrogenibium
azorense Az-Fu1]
gi|225643097|gb|ACN98147.1| flagellar biosynthetic protein FliQ [Sulfurihydrogenibium
azorense Az-Fu1]
Length = 89
Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 44/84 (52%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ + + L S PV+ +G++I+ +A TQI E+T+TFVPKI+A I
Sbjct: 1 MSVDLAVNLVTEMFKIALLVSTPVILLIFIVGLIISIFEAATQINEMTITFVPKIVAAVI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
LII ++ ++ + +L I
Sbjct: 61 GLIIFGSWMTTELVDYTRQMLETI 84
>gi|126176173|ref|YP_001052322.1| export protein FliQ [Shewanella baltica OS155]
gi|125999378|gb|ABN63453.1| export protein FliQ, family 3 [Shewanella baltica OS155]
Length = 89
Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 20/86 (23%), Positives = 46/86 (53%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ ++ + +M+ ++ + ++ + LG+++A QA TQ+ E TL+F+P++I +
Sbjct: 1 MDINELTSLFADSMFLVIIMVSVLVTPGLILGLIVAVFQAATQVNEQTLSFLPRLIITLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
++ S ++ QIS + I
Sbjct: 61 MVLFSGHWLIQQISDLFDRLFMNIPH 86
>gi|237800000|ref|ZP_04588461.1| type III secretion protein HrcS [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331022855|gb|EGI02912.1| type III secretion protein HrcS [Pseudomonas syringae pv. oryzae
str. 1_6]
Length = 72
Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 41/68 (60%)
Query: 20 SSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTL 79
+AP L A+ +G++ + LQAL QIQ+ TL F K+ AV +TL ++ +IG ++ F+ +
Sbjct: 1 MTAPPLGVAVLVGVITSLLQALMQIQDQTLPFGIKLAAVGLTLAMTGRWIGVELIQFINM 60
Query: 80 VLSRIQSS 87
I S
Sbjct: 61 AFDLIARS 68
>gi|325529066|gb|EGD06067.1| hypothetical protein B1M_03247 [Burkholderia sp. TJI49]
Length = 92
Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 51/84 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + +L++ R A+ +L S P++ A G+++A LQA+TQ+Q+ + ++IAV +
Sbjct: 1 MTSSTILDLTRQALMLVLLLSLPIVLIATVTGLVVAILQAVTQVQDANIGIAVRLIAVMV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
L++ + ++GG++ F L R+
Sbjct: 61 ALVLLSGWLGGEVLRFAQQALERM 84
>gi|257487955|ref|ZP_05641996.1| type III secretion component, putative [Pseudomonas syringae pv.
tabaci ATCC 11528]
gi|320324518|gb|EFW80595.1| type III secretion component, putative [Pseudomonas syringae pv.
glycinea str. B076]
gi|320328891|gb|EFW84890.1| type III secretion component, putative [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330985217|gb|EGH83320.1| type III secretion component [Pseudomonas syringae pv. lachrymans
str. M301315]
gi|331008644|gb|EGH88700.1| type III secretion component [Pseudomonas syringae pv. tabaci
ATCC 11528]
Length = 89
Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 47/85 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + L + A+ T+L SAP L A+ +G+ + LQALTQIQ+ TL V K++AV +
Sbjct: 1 MGQDVFLSLMNKALMTVLLLSAPALVVAIVVGLSVGLLQALTQIQDQTLPQVVKLVAVLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
++ P + GQ++ VL
Sbjct: 61 VIVFVGPLLAGQVAELGNQVLDNFP 85
>gi|237800780|ref|ZP_04589241.1| type III secretion component [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331023638|gb|EGI03695.1| type III secretion component [Pseudomonas syringae pv. oryzae
str. 1_6]
Length = 89
Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 46/85 (54%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + L + A+ T+L SAP L A+ +G+ + LQALTQIQ+ TL V K++ V +
Sbjct: 1 MGQDVFLSLMNQALMTVLLLSAPALIVAIVVGLSVGLLQALTQIQDQTLPQVVKLVGVLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
++ P + GQ++ VL
Sbjct: 61 VIVFVGPLLAGQVAELGNQVLDNFP 85
>gi|120597288|ref|YP_961862.1| flagellar biosynthetic protein FliQ [Shewanella sp. W3-18-1]
gi|146294567|ref|YP_001184991.1| flagellar biosynthetic protein FliQ [Shewanella putrefaciens
CN-32]
gi|120557381|gb|ABM23308.1| flagellar biosynthetic protein FliQ [Shewanella sp. W3-18-1]
gi|145566257|gb|ABP77192.1| flagellar biosynthetic protein FliQ [Shewanella putrefaciens
CN-32]
Length = 89
Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 46/86 (53%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ ++ + +M+ ++ + ++ + LG+++A QA TQ+ E TL+F+P++I +
Sbjct: 1 MDINELTALFADSMFLVIMMVSALVTPGLILGLIVAVFQAATQVNEQTLSFLPRLIITLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
++ S ++ Q+S + I
Sbjct: 61 MVLFSGHWLIQQLSDLFDRLFMNIPH 86
>gi|51587267|emb|CAE53655.1| putative HrcS [Pseudomonas fluorescens bv. I]
Length = 96
Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 50/83 (60%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
D + + + M ++ SAP L A+ +G+L++ +QAL QIQ+ TL F K++AV +TLI+
Sbjct: 2 DPIVLFKQGMLLVVVLSAPPLIVAVVVGVLVSLVQALMQIQDQTLPFGIKLVAVGVTLIL 61
Query: 65 SAPFIGGQISSFVTLVLSRIQSS 87
+ +IG ++ + L I S
Sbjct: 62 TGRWIGVELIQLINLTFEMIGRS 84
>gi|253688598|ref|YP_003017788.1| type III secretion protein, HrpO family [Pectobacterium
carotovorum subsp. carotovorum PC1]
gi|251755176|gb|ACT13252.1| type III secretion protein, HrpO family [Pectobacterium
carotovorum subsp. carotovorum PC1]
Length = 86
Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 47/81 (58%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
+++ + R AM ++ SAP L A+ +G+LI+ LQA+ Q+Q+ TL F K+I+V + L +
Sbjct: 2 EIITLFRQAMVMVVLLSAPPLLVAVIVGVLISLLQAVMQLQDQTLPFAVKLISVGLALAL 61
Query: 65 SAPFIGGQISSFVTLVLSRIQ 85
+IG ++ + I
Sbjct: 62 CGRWIGVELMQLAITAFNMIA 82
>gi|289624374|ref|ZP_06457328.1| type III secretion component, putative [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|289646627|ref|ZP_06477970.1| type III secretion component, putative [Pseudomonas syringae pv.
aesculi str. 2250]
gi|298487105|ref|ZP_07005155.1| type III secretion system integral membrane protein [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
gi|298158348|gb|EFH99418.1| type III secretion system integral membrane protein [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
gi|330868642|gb|EGH03351.1| type III secretion component [Pseudomonas syringae pv. aesculi
str. 0893_23]
Length = 89
Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 47/85 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + L + A+ T+L SAP L A+ +G+ + LQALTQIQ+ TL V K++AV +
Sbjct: 1 MGQDVFLSLMNKALMTVLLLSAPALIVAIVVGLSVGLLQALTQIQDQTLPQVVKLVAVLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
++ P + GQ++ VL
Sbjct: 61 VIVFVGPLLAGQVAELGNQVLDNFP 85
>gi|51587275|emb|CAE53661.1| putative HrcS [Pseudomonas fluorescens bv. V]
gi|51587287|emb|CAE53670.1| putative HrcS [Pseudomonas fluorescens bv. V]
gi|226446412|gb|ACO58571.1| HrcS [Pseudomonas fluorescens]
Length = 87
Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 48/81 (59%)
Query: 7 LEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISA 66
+ + + M ++ +AP L A+ +G+L + +QAL QIQ+ TL F K++AV +TLI++
Sbjct: 4 IVLFKQGMLLVVVLTAPPLMVAVVVGVLTSLVQALMQIQDQTLPFGIKLVAVGVTLIMTG 63
Query: 67 PFIGGQISSFVTLVLSRIQSS 87
+IG ++ + L I S
Sbjct: 64 RWIGVELIQLINLTFEMIGRS 84
>gi|327478781|gb|AEA82091.1| export protein FliQ [Pseudomonas stutzeri DSM 4166]
Length = 90
Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 18/83 (21%), Positives = 38/83 (45%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
+ + I A+ I+ ++ ++ G+LI+ QA TQI E L+F+P+++
Sbjct: 2 LTPDTAVHIVSNAIHVIVLVVCVLIVPSLLGGLLISIFQAATQINEQMLSFLPRLLITLG 61
Query: 61 TLIISAPFIGGQISSFVTLVLSR 83
L+ + +I +S +
Sbjct: 62 MLVFAGHWILRTLSDLFIETFQQ 84
>gi|261341516|ref|ZP_05969374.1| flagellar biosynthetic protein FliQ [Enterobacter cancerogenus
ATCC 35316]
gi|288316314|gb|EFC55252.1| flagellar biosynthetic protein FliQ [Enterobacter cancerogenus
ATCC 35316]
Length = 90
Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 40/76 (52%)
Query: 8 EIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAP 67
+I + +L SA + ++ +G+ ++ QA TQI E TL+F+P+++ LII
Sbjct: 9 DIMATGIKLVLIISAVAIIPSLIVGLCVSIFQATTQINEQTLSFLPRLLVTLAVLIIGGK 68
Query: 68 FIGGQISSFVTLVLSR 83
++ Q+ F + +
Sbjct: 69 WMLTQLVDFTVNIFQQ 84
>gi|330505667|ref|YP_004382536.1| export protein FliQ [Pseudomonas mendocina NK-01]
gi|328919953|gb|AEB60784.1| export protein FliQ [Pseudomonas mendocina NK-01]
Length = 90
Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 15/83 (18%), Positives = 36/83 (43%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
+ ++ A++ ++ ++ G+L++ QA TQI E L+F+P+++
Sbjct: 2 LTPEHAAQLVAHAVYITGLIVCVLVVPSLLGGLLVSIFQAATQINEQMLSFLPRLLITLA 61
Query: 61 TLIISAPFIGGQISSFVTLVLSR 83
L+ S +I + +
Sbjct: 62 MLVFSGHWILRTLGDLFIETFKQ 84
>gi|190694823|gb|ACE88958.1| HrcS [Pseudomonas fluorescens]
Length = 87
Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 48/81 (59%)
Query: 7 LEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISA 66
+ + + M ++ +AP L A+ +G++ + +QAL Q+Q+ TL F K++AV ITLI++
Sbjct: 4 IVLFKQGMLLVVMLTAPPLIVAVVVGVMTSLVQALMQVQDQTLPFGIKLVAVGITLIMTG 63
Query: 67 PFIGGQISSFVTLVLSRIQSS 87
+IG ++ + L I S
Sbjct: 64 RWIGVELIQLMNLTFDMIGRS 84
>gi|89068704|ref|ZP_01156090.1| putative flagellar biosynthetic transmembrane protein [Oceanicola
granulosus HTCC2516]
gi|89045667|gb|EAR51729.1| putative flagellar biosynthetic transmembrane protein [Oceanicola
granulosus HTCC2516]
Length = 88
Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 39/88 (44%), Positives = 55/88 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ AD+ + A+ +L +SAPVL A+ +G+ IA QALTQIQE+TLTFVPKI+A+F+
Sbjct: 1 MSAADIYAVLSDAILAVLLASAPVLVVALVVGLGIALFQALTQIQEMTLTFVPKIVAIFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L+ S PF+ + V I S
Sbjct: 61 ALLASLPFVYATLEGLSDTVFDLIVSGF 88
>gi|283832656|ref|ZP_06352397.1| flagellar biosynthetic protein FliQ [Citrobacter youngae ATCC
29220]
gi|291072330|gb|EFE10439.1| flagellar biosynthetic protein FliQ [Citrobacter youngae ATCC
29220]
Length = 83
Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 52/79 (65%)
Query: 7 LEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISA 66
+ + AM L+ +AP+L A+ G++I+ LQA TQI E+TL+F+PKI+AVFI +I++
Sbjct: 1 MMMGTEAMKVALALAAPLLLVALVTGLIISILQAATQINEMTLSFIPKIVAVFIAIIVAG 60
Query: 67 PFIGGQISSFVTLVLSRIQ 85
P++ + +V + S +
Sbjct: 61 PWMLNLLLDYVRTLFSNLP 79
>gi|268589971|ref|ZP_06124192.1| flagellar biosynthetic protein FliQ [Providencia rettgeri DSM
1131]
gi|291314688|gb|EFE55141.1| flagellar biosynthetic protein FliQ [Providencia rettgeri DSM
1131]
Length = 89
Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 54/85 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + AM L +AP+L +A+ G++I+ LQA TQ+ E+TL+F+PKI++V
Sbjct: 1 MTPESVMAMGTEAMKIALMLAAPLLLAALAAGLIISLLQAATQVNEMTLSFIPKILSVIS 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
+II+ P++ ++ ++ +LS +
Sbjct: 61 VIIIAGPWMLNLLTDYMRSLLSNLP 85
>gi|330814979|ref|YP_004358684.1| Flagellar biosynthesis protein FliQ [Burkholderia gladioli BSR3]
gi|327367372|gb|AEA58728.1| Flagellar biosynthesis protein FliQ [Burkholderia gladioli BSR3]
Length = 90
Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 53/86 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + AM L +AP+L A+ +G++++ QA TQI E TL+F+PK++A+ +
Sbjct: 1 MTPESVMTLGHQAMMIGLLLAAPLLLVALVVGLVVSLFQAATQINESTLSFIPKLLAIVV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
T++I+ P++ + ++ +L + +
Sbjct: 61 TMVIAGPWMLSTMLDYMRDILMHVAT 86
>gi|167743327|ref|ZP_02416101.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 14]
Length = 87
Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 45/81 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M D++ + M L S PV+ A G+ I+FLQA+T +QE ++++ K++AV +
Sbjct: 1 MEIDDLIRLTSQGMMLCLYISLPVVLVAAASGLAISFLQAITSLQEQSISYGVKLVAVTV 60
Query: 61 TLIISAPFIGGQISSFVTLVL 81
+ I+ P+ +I F ++
Sbjct: 61 AVAIAGPWAAAEILHFAQQLM 81
>gi|51587283|emb|CAE53667.1| putative HrcS [Pseudomonas fluorescens bv. I]
Length = 87
Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 48/81 (59%)
Query: 7 LEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISA 66
+ + + M ++ +AP L A+ +G++ + +QAL Q+Q+ TL F K++AV ITLI++
Sbjct: 4 IVLFKQGMLLVVMLTAPPLIVAVVVGVMTSLVQALMQVQDQTLPFGIKLVAVGITLIMTG 63
Query: 67 PFIGGQISSFVTLVLSRIQSS 87
+IG ++ + + I S
Sbjct: 64 RWIGVELIQLMNVTFDMIGRS 84
>gi|167576639|ref|ZP_02369513.1| flagellar biosynthetic protein FliQ, putative [Burkholderia
thailandensis TXDOH]
Length = 90
Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 18/83 (21%), Positives = 42/83 (50%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
+ +E+ A+ + A ++ + +G+++A QA TQI E TL+F+P+++A
Sbjct: 2 LTSDLAVELVGNAIRLVTLMVAVIVAPGLLVGLVVALFQAATQINEQTLSFLPRLLATLA 61
Query: 61 TLIISAPFIGGQISSFVTLVLSR 83
L++ ++ + + +R
Sbjct: 62 VLVLGGHWLVQTLMDYCVATFTR 84
>gi|188590018|ref|YP_001920218.1| flagellar biosynthetic protein FliQ [Clostridium botulinum E3
str. Alaska E43]
gi|251779783|ref|ZP_04822703.1| flagellar biosynthetic protein FliQ [Clostridium botulinum E1
str. 'BoNT E Beluga']
gi|188500299|gb|ACD53435.1| flagellar biosynthetic protein FliQ [Clostridium botulinum E3
str. Alaska E43]
gi|243084098|gb|EES49988.1| flagellar biosynthetic protein FliQ [Clostridium botulinum E1
str. 'BoNT E Beluga']
Length = 89
Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 48/84 (57%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M++A + + + + +AP+L + +G+LI+ +QA TQIQE TLTFVPK+IA I
Sbjct: 1 MSQALLNGVVKDTIIVAAKLAAPILLVVLIVGLLISIIQATTQIQEQTLTFVPKLIAGAI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
I ++ + SF T + I
Sbjct: 61 IGIFLGSWMLQTLMSFTTRIFELI 84
>gi|89899372|ref|YP_521843.1| flagellar biosynthetic protein FliQ [Rhodoferax ferrireducens
T118]
gi|89344109|gb|ABD68312.1| flagellar biosynthetic protein FliQ [Rhodoferax ferrireducens
T118]
Length = 85
Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 48/84 (57%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
VL + + A+ +L SAPVL + +G+L++ QA+TQI E TL FVPK++A +
Sbjct: 1 MVLTMGQEALIMLLMVSAPVLGVVLVVGLLVSLFQAVTQINEATLAFVPKLVAAMAVFAL 60
Query: 65 SAPFIGGQISSFVTLVLSRIQSSL 88
+ P++ + ++ I S++
Sbjct: 61 AGPWMLSILVDYIRRTFEAIPSAV 84
>gi|146309437|ref|YP_001189902.1| export protein FliQ [Pseudomonas mendocina ymp]
gi|145577638|gb|ABP87170.1| export protein FliQ, family 3 [Pseudomonas mendocina ymp]
Length = 90
Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 14/83 (16%), Positives = 36/83 (43%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
+ ++ A++ ++ ++ G+L++ QA TQI E L+F+P+++
Sbjct: 2 LTPEHAAQLVAHAVYITGLIVCVLVVPSLLGGLLVSIFQAATQINEQMLSFLPRLLITLA 61
Query: 61 TLIISAPFIGGQISSFVTLVLSR 83
L+ + +I + +
Sbjct: 62 MLVFAGHWILRTLGDLFIETFKQ 84
>gi|238757866|ref|ZP_04619048.1| Secretion system apparatus protein ssaS [Yersinia aldovae ATCC
35236]
gi|238703851|gb|EEP96386.1| Secretion system apparatus protein ssaS [Yersinia aldovae ATCC
35236]
Length = 75
Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 49/74 (66%)
Query: 14 MWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQI 73
MW +L +S PV+ A +GI ++ QALTQIQ+ TL F+ K++AV + L+++ ++GG +
Sbjct: 1 MWLVLMTSLPVVLVASVVGIAVSLFQALTQIQDQTLQFMIKLLAVALMLMVTYHWLGGLL 60
Query: 74 SSFVTLVLSRIQSS 87
++ VL +I +
Sbjct: 61 LAYTRQVLLQIGTH 74
>gi|168704085|ref|ZP_02736362.1| hypothetical protein GobsU_31414 [Gemmata obscuriglobus UQM 2246]
Length = 89
Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 44/82 (53%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + + L + P L ++ +G+L++ Q +T IQ+ TL++VP+II V +
Sbjct: 1 MTAEHVIRMTQELFLVALVVALPALVISLAVGLLVSIFQTVTSIQDQTLSYVPRIILVGL 60
Query: 61 TLIISAPFIGGQISSFVTLVLS 82
L+++ F Q +F + +
Sbjct: 61 ALVVTLGFSFQQAVAFTHRMFA 82
>gi|114797953|ref|YP_759003.1| flagellar biosynthetic protein fliQ [Hyphomonas neptunium ATCC
15444]
gi|114738127|gb|ABI76252.1| flagellar biosynthetic protein fliQ [Hyphomonas neptunium ATCC
15444]
Length = 87
Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 45/79 (56%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E ++ E+ RA +W P+L + +G +I +QALT IQE+TLTF+PKI+AV I
Sbjct: 1 MSEGEIFEVLRAHIWGAAMMGLPILAVTLVVGFVIGLIQALTSIQEMTLTFIPKILAVII 60
Query: 61 TLIISAPFIGGQISSFVTL 79
+S ++ I
Sbjct: 61 VFFLSLGYMTKVILDLFNN 79
>gi|308048763|ref|YP_003912329.1| flagellar biosynthetic protein FliQ [Ferrimonas balearica DSM
9799]
gi|307630953|gb|ADN75255.1| flagellar biosynthetic protein FliQ [Ferrimonas balearica DSM
9799]
Length = 89
Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 46/88 (52%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M ++I R A+ I+ + ++ + +G+++A QA T I E TL+F+P+++ +
Sbjct: 1 MTPEAFVDIFRHALQVIVMMVSAIIVPGLVVGLIVAVFQAATSINEQTLSFLPRLLVTLV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
T++ ++ + + +++ I +
Sbjct: 61 TMMFLGHWLVRTLMELMYEMVALIPQMV 88
>gi|224583521|ref|YP_002637319.1| flagellar biosynthesis protein [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|224468048|gb|ACN45878.1| flagellar biosynthesis protein [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|322660307|gb|EFY56545.1| flagellar biosynthesis protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|323195409|gb|EFZ80589.1| flagellar biosynthesis protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|323217540|gb|EGA02259.1| flagellar biosynthesis protein [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|323253952|gb|EGA37776.1| flagellar biosynthesis protein [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
Length = 83
Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 52/79 (65%)
Query: 7 LEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISA 66
+ + AM L+ +AP+L A+ G++I+ LQA TQI E+TL+F+PKI+AVFI +I++
Sbjct: 1 MMMGTEAMKVALALAAPLLLVALITGLIISILQAATQINEMTLSFIPKIVAVFIAIIVAG 60
Query: 67 PFIGGQISSFVTLVLSRIQ 85
P++ + +V + S +
Sbjct: 61 PWMLNLLLDYVRTLFSNLP 79
>gi|116626499|ref|YP_828655.1| export protein FliQ [Candidatus Solibacter usitatus Ellin6076]
gi|116229661|gb|ABJ88370.1| export protein FliQ, family 3 [Candidatus Solibacter usitatus
Ellin6076]
Length = 89
Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats.
Identities = 20/87 (22%), Positives = 43/87 (49%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V++I R A+ T +AP+L GI+I+ +Q T +Q+ + +P+++A
Sbjct: 1 MTPETVVQIIRQALMTTFWLAAPLLAIGFLAGIVISLVQIATSMQDNAFSTIPRLVAFLA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
L+ P++ + ++ +L +
Sbjct: 61 GLLFLLPWMLQRTMAYTISILGDLGRY 87
>gi|321399658|emb|CBJ44659.1| putative type III secretion system protein HrcS [Pseudomonas sp.
MTR-J5-521]
Length = 83
Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
D L + + M +L SAP L A+ +G+L + +QAL QIQ+ TL F K++AV +TL++
Sbjct: 2 DALTLFKEGMLLVL-LSAPPLIVAVVVGVLTSLVQALMQIQDQTLPFGIKLVAVGLTLLV 60
Query: 65 SAPFIGGQISSFVTLVLSRIQS 86
+ ++G ++ + + +
Sbjct: 61 TGRWVGVELLGLLRRAFEMMAN 82
>gi|161520289|ref|YP_001583716.1| HrpO family type III secretion protein [Burkholderia multivorans
ATCC 17616]
gi|189353533|ref|YP_001949160.1| hypothetical protein BMULJ_04777 [Burkholderia multivorans ATCC
17616]
gi|221200553|ref|ZP_03573595.1| type III secretion protein, HrpO family [Burkholderia multivorans
CGD2M]
gi|221206233|ref|ZP_03579247.1| type III secretion protein, HrpO family [Burkholderia multivorans
CGD2]
gi|221209589|ref|ZP_03582570.1| type III secretion protein, HrpO family [Burkholderia multivorans
CGD1]
gi|160344339|gb|ABX17424.1| type III secretion protein, HrpO family [Burkholderia multivorans
ATCC 17616]
gi|189337555|dbj|BAG46624.1| conserved hypothetical protein [Burkholderia multivorans ATCC
17616]
gi|221170277|gb|EEE02743.1| type III secretion protein, HrpO family [Burkholderia multivorans
CGD1]
gi|221174245|gb|EEE06678.1| type III secretion protein, HrpO family [Burkholderia multivorans
CGD2]
gi|221179894|gb|EEE12299.1| type III secretion protein, HrpO family [Burkholderia multivorans
CGD2M]
Length = 92
Score = 50.6 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 50/84 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + +L++ R A+ +L S P++ A G+++A LQA+TQ+Q+ + ++IAV +
Sbjct: 1 MTSSTILDLTRQALMLVLLLSLPIVLIATVTGLVVAILQAVTQVQDANIGIAVRLIAVMV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
L++ + ++G ++ F L R+
Sbjct: 61 ALVLLSGWLGSEVLRFAQQALERM 84
>gi|293446329|ref|ZP_06662751.1| flagellar biosynthetic protein FliQ [Escherichia coli B088]
gi|291323159|gb|EFE62587.1| flagellar biosynthetic protein FliQ [Escherichia coli B088]
Length = 89
Score = 50.6 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 55/85 (64%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + A+ L+ +AP+L A+ G++I+ LQA TQI E+TL+F+PKIIAVFI
Sbjct: 1 MTPESVMMMGTEALKVALALAAPLLLVALVTGLIISILQAATQINEMTLSFIPKIIAVFI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
+II+ P++ + +V+ + + +
Sbjct: 61 AIIIAGPWMLNLLLDYVSTLFTNLP 85
>gi|83717562|ref|YP_438368.1| flagellar biosynthetic protein FliQ [Burkholderia thailandensis
E264]
gi|167614814|ref|ZP_02383449.1| flagellar biosynthetic protein FliQ, putative [Burkholderia
thailandensis Bt4]
gi|257141399|ref|ZP_05589661.1| flagellar biosynthetic protein FliQ [Burkholderia thailandensis
E264]
gi|83651387|gb|ABC35451.1| flagellar biosynthetic protein FliQ, putative [Burkholderia
thailandensis E264]
Length = 90
Score = 50.6 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 18/83 (21%), Positives = 42/83 (50%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
+ +E+ A+ + A ++ + +G+++A QA TQI E TL+F+P+++A
Sbjct: 2 LTSDLAVELVGNAIRLVTLMVAVIIAPGLLVGLVVALFQAATQINEQTLSFLPRLLATLA 61
Query: 61 TLIISAPFIGGQISSFVTLVLSR 83
L++ ++ + + +R
Sbjct: 62 VLVLGGHWLVQTLMDYCVATFTR 84
>gi|254254351|ref|ZP_04947668.1| Type III secretory pathway component EscS [Burkholderia dolosa
AUO158]
gi|124898996|gb|EAY70839.1| Type III secretory pathway component EscS [Burkholderia dolosa
AUO158]
Length = 92
Score = 50.6 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 50/84 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + +L++ R A+ +L S P++ A G+ +A LQA+TQ+Q+ + ++IAV +
Sbjct: 1 MTSSTILDLTRQALMLVLLLSLPIVLIATVTGLAVAILQAVTQVQDANIGIAVRLIAVMV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
L++ + ++GG++ F L R+
Sbjct: 61 ALVLLSGWLGGEVLRFAQQALERM 84
>gi|110677661|ref|YP_680668.1| flagellar biosynthetic protein FliQ [Roseobacter denitrificans
OCh 114]
gi|163733141|ref|ZP_02140585.1| flagellar biosynthetic protein FliQ [Roseobacter litoralis Och
149]
gi|109453777|gb|ABG29982.1| flagellar biosynthetic protein FliQ [Roseobacter denitrificans
OCh 114]
gi|161393676|gb|EDQ18001.1| flagellar biosynthetic protein FliQ [Roseobacter litoralis Och
149]
Length = 89
Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 44/78 (56%)
Query: 2 NEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFIT 61
++ + R +W + S PVL +A+ G+ I +QALT IQE+TLTFVPK+ A+ +
Sbjct: 3 DQIIFFDTLRHGLWIAVLISIPVLTAALVTGVSIGLVQALTSIQEMTLTFVPKLAAIVLV 62
Query: 62 LIISAPFIGGQISSFVTL 79
+S F+ + SF
Sbjct: 63 FWMSMGFMTQTLVSFFHE 80
>gi|107025867|ref|YP_623378.1| Type III secretion protein HrpO [Burkholderia cenocepacia AU
1054]
gi|116692949|ref|YP_838482.1| HrpO family type III secretion protein [Burkholderia cenocepacia
HI2424]
gi|170737786|ref|YP_001779046.1| HrpO family type III secretion protein [Burkholderia cenocepacia
MC0-3]
gi|206563897|ref|YP_002234660.1| type III secretion system protein [Burkholderia cenocepacia
J2315]
gi|254250195|ref|ZP_04943515.1| Type III secretory pathway, component EscS [Burkholderia
cenocepacia PC184]
gi|18092667|gb|AAL59396.1| BcscS [Burkholderia cenocepacia]
gi|28394248|gb|AAO31723.1| BcscS [Burkholderia cenocepacia]
gi|105895241|gb|ABF78405.1| Type III secretion protein HrpO [Burkholderia cenocepacia AU
1054]
gi|116650949|gb|ABK11589.1| type III secretion protein, HrpO family [Burkholderia cenocepacia
HI2424]
gi|124876696|gb|EAY66686.1| Type III secretory pathway, component EscS [Burkholderia
cenocepacia PC184]
gi|169819974|gb|ACA94556.1| type III secretion protein, HrpO family [Burkholderia cenocepacia
MC0-3]
gi|198039937|emb|CAR55915.1| type III secretion system protein [Burkholderia cenocepacia
J2315]
Length = 92
Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 51/84 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + +L++ R A+ +L S P++ A G+++A LQA+TQ+Q+ + ++IAV +
Sbjct: 1 MTSSTILDLTRQALMLVLLLSLPIVLIATVTGLVVAILQAVTQVQDANIGIAVRLIAVMV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
L++ + ++GG++ F L R+
Sbjct: 61 ALVLLSGWLGGEVLRFAQQALERM 84
>gi|51587271|emb|CAE53658.1| putative HrcS [Pseudomonas fluorescens]
Length = 87
Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 47/81 (58%)
Query: 7 LEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISA 66
+ + + M ++ AP L A+ +G+L + +QAL QIQ+ TL F K++AV ITLI++
Sbjct: 4 IVLFKQGMLLVVVLLAPPLIVAVVVGVLTSLVQALMQIQDQTLPFGIKLVAVGITLIMTG 63
Query: 67 PFIGGQISSFVTLVLSRIQSS 87
+IG ++ + L I S
Sbjct: 64 RWIGVELIQLINLTFEMIGRS 84
>gi|283953710|ref|ZP_06371241.1| flagellar biosynthetic protein [Campylobacter jejuni subsp.
jejuni 414]
gi|283794751|gb|EFC33489.1| flagellar biosynthetic protein [Campylobacter jejuni subsp.
jejuni 414]
Length = 89
Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 51/88 (57%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E+ ++ + L S P+L + + G+LI+ QA TQI E+TL+FVPKII V I
Sbjct: 1 MDESTLVALGVQTFKITLLLSLPMLLAGLIAGLLISIFQATTQINEMTLSFVPKIILVVI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
LI P++ + F +L++I + +
Sbjct: 61 ILIFLMPWMTATMIDFTENILNQIPTFI 88
>gi|325917837|ref|ZP_08180016.1| flagellar biosynthesis pathway, component FliQ [Xanthomonas
vesicatoria ATCC 35937]
gi|325535948|gb|EGD07765.1| flagellar biosynthesis pathway, component FliQ [Xanthomonas
vesicatoria ATCC 35937]
Length = 89
Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 45/88 (51%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ L R + T+L + P+L + + +G++I +QA TQ+ E T+ FV K +A+
Sbjct: 1 MSPEIALTELRGGLVTVLWIAGPMLLAVLIVGVVIGVVQAATQLNEPTIGFVAKAVALTA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
TL + + G + F + RI +
Sbjct: 61 TLFATGSMLLGHLVEFTIALFQRIPHLI 88
>gi|109946731|ref|YP_663959.1| flagellar biosynthesis protein FliQ [Helicobacter acinonychis
str. Sheeba]
gi|109713952|emb|CAJ98960.1| flagellar biosynthetic protein [Helicobacter acinonychis str.
Sheeba]
Length = 88
Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 49/83 (59%)
Query: 3 EADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITL 62
E+ ++++A L S PVL + +G+L++ QA TQI E+TL+FVPKI+AV L
Sbjct: 2 ESQLMKLAIETYKITLIISLPVLLVGLVVGLLVSIFQATTQINEMTLSFVPKILAVIGVL 61
Query: 63 IISAPFIGGQISSFVTLVLSRIQ 85
I++ P++ + + ++ I
Sbjct: 62 ILTMPWMTNMLLDYTKTLIKLIP 84
>gi|115358978|ref|YP_776116.1| HrpO family type III secretion protein [Burkholderia ambifaria
AMMD]
gi|115284266|gb|ABI89782.1| type III secretion protein, HrpO family [Burkholderia ambifaria
AMMD]
Length = 92
Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 50/84 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + +L++ R A+ +L S P++ A G+++A LQA+TQ+Q+ + ++IAV +
Sbjct: 1 MTSSTILDLTRQALMLVLLLSLPIVLIATVTGLVVAILQAVTQVQDANIGIAVRLIAVMV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
L++ + ++G ++ F L R+
Sbjct: 61 ALVLLSGWLGSEVLRFAQQALERM 84
>gi|126445424|ref|YP_001061221.1| flagellar biosynthetic protein FliQ [Burkholderia pseudomallei
668]
gi|134280861|ref|ZP_01767571.1| flagellar biosynthetic protein FliQ [Burkholderia pseudomallei
305]
gi|167725905|ref|ZP_02409141.1| flagellar biosynthetic protein FliQ [Burkholderia pseudomallei
DM98]
gi|167905064|ref|ZP_02492269.1| flagellar biosynthetic protein FliQ [Burkholderia pseudomallei
NCTC 13177]
gi|254182914|ref|ZP_04889507.1| flagellar biosynthetic protein FliQ [Burkholderia pseudomallei
1655]
gi|254299709|ref|ZP_04967158.1| flagellar biosynthetic protein FliQ [Burkholderia pseudomallei
406e]
gi|125657196|gb|ABN48684.1| FliQ [Burkholderia pseudomallei]
gi|126224915|gb|ABN88420.1| flagellar biosynthetic protein FliQ [Burkholderia pseudomallei
668]
gi|134247883|gb|EBA47967.1| flagellar biosynthetic protein FliQ [Burkholderia pseudomallei
305]
gi|157809667|gb|EDO86837.1| flagellar biosynthetic protein FliQ [Burkholderia pseudomallei
406e]
gi|184213448|gb|EDU10491.1| flagellar biosynthetic protein FliQ [Burkholderia pseudomallei
1655]
Length = 90
Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats.
Identities = 18/83 (21%), Positives = 43/83 (51%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
+ +E+ A+ + A ++ + +G+++A QA TQI E TL+F+P+++A
Sbjct: 2 LTSDLAVELVGNAIRLVTLMVAVIIAPGLLVGLVVALFQAATQINEQTLSFLPRLLATLA 61
Query: 61 TLIISAPFIGGQISSFVTLVLSR 83
L+++ ++ + + +R
Sbjct: 62 ILVLAGHWLVQTLMDYCVATFTR 84
>gi|326386957|ref|ZP_08208570.1| flagellar biosynthetic protein [Novosphingobium nitrogenifigens
DSM 19370]
gi|326208566|gb|EGD59370.1| flagellar biosynthetic protein [Novosphingobium nitrogenifigens
DSM 19370]
Length = 90
Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 48/84 (57%)
Query: 2 NEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFIT 61
+ + +L +A +W + PVL +++ +G+++ +QA T + E TLTFVPK+ +
Sbjct: 3 DTSSLLALADRMIWITALIATPVLLASLAVGLVVGVIQAATSVNEQTLTFVPKLAVTALV 62
Query: 62 LIISAPFIGGQISSFVTLVLSRIQ 85
L++ + G + F+ ++++I
Sbjct: 63 LVLLGGAMLGLVGDFLKDIMAQIA 86
>gi|313905145|ref|ZP_07838514.1| export protein FliQ family 3 [Eubacterium cellulosolvens 6]
gi|313470048|gb|EFR65381.1| export protein FliQ family 3 [Eubacterium cellulosolvens 6]
Length = 88
Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 44/87 (50%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + V++I R L + P L +M +GI++A QA TQI E TL FV K++++
Sbjct: 1 MTNSQVIDIVRQTFMMALRIALPFLLVSMLVGIILAIFQAATQINEQTLMFVLKLLSIVA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
+ + I + F +LS I S
Sbjct: 61 MIFMLGSTILVNMQEFFKHILSIIASG 87
>gi|291276806|ref|YP_003516578.1| flagellar biosynthetic protein [Helicobacter mustelae 12198]
gi|290964000|emb|CBG39839.1| flagellar biosynthetic protein [Helicobacter mustelae 12198]
Length = 83
Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 49/82 (59%)
Query: 7 LEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISA 66
+ +A L S P+LF + +G++++ QA TQI E+TL+FVPKI+AV +I +
Sbjct: 1 MGLAIETYKITLIISLPILFVGLVVGLVVSIFQATTQINEMTLSFVPKILAVIGVIIFTM 60
Query: 67 PFIGGQISSFVTLVLSRIQSSL 88
P++ + + T +++ I S +
Sbjct: 61 PWMLNMLMDYTTRLINLIPSFI 82
>gi|224417762|ref|ZP_03655768.1| flagellar biosynthesis protein FliQ [Helicobacter canadensis MIT
98-5491]
gi|253827105|ref|ZP_04869990.1| flagellar biosynthesis protein [Helicobacter canadensis MIT
98-5491]
gi|313141303|ref|ZP_07803496.1| flagellar biosynthesis protein FliQ [Helicobacter canadensis MIT
98-5491]
gi|253510511|gb|EES89170.1| flagellar biosynthesis protein [Helicobacter canadensis MIT
98-5491]
gi|313130334|gb|EFR47951.1| flagellar biosynthesis protein FliQ [Helicobacter canadensis MIT
98-5491]
Length = 88
Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 50/86 (58%)
Query: 3 EADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITL 62
EA ++ +A L S P+L + +G+LI+ QA TQI E+TLTFVPKI+AV + +
Sbjct: 2 EAQLMNLAIETYKITLILSLPMLLVGLVVGLLISIFQATTQINEMTLTFVPKILAVIVVI 61
Query: 63 IISAPFIGGQISSFVTLVLSRIQSSL 88
I + P++ + F + + + + +
Sbjct: 62 IFTMPWMLNMLIDFTARIFNMMPNFI 87
>gi|322836571|ref|YP_004210067.1| type III secretion apparatus protein YscS [Yersinia pestis Java
9]
gi|321161345|gb|ADW67051.1| type III secretion apparatus protein YscS [Yersinia pestis Java
9]
Length = 67
Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 43/65 (66%)
Query: 22 APVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVL 81
P + A +G L++ +QALTQIQE TL FV K+IAV +TL +A ++G ++ SF + +
Sbjct: 1 MPPVLVAAVVGTLVSLVQALTQIQEQTLGFVIKLIAVVVTLFATASWLGNELHSFAEMTM 60
Query: 82 SRIQS 86
+IQ
Sbjct: 61 MKIQG 65
>gi|317011552|gb|ADU85299.1| flagellar biosynthesis protein FliQ [Helicobacter pylori
SouthAfrica7]
Length = 88
Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 49/83 (59%)
Query: 3 EADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITL 62
E+ ++++A L S PVL + +G+L++ QA TQI E+TL+FVPKI+AV L
Sbjct: 2 ESQLMKLAIETYKITLMISLPVLLVGLVVGLLVSIFQATTQINEMTLSFVPKILAVIGVL 61
Query: 63 IISAPFIGGQISSFVTLVLSRIQ 85
I++ P++ + + ++ I
Sbjct: 62 ILTMPWMTNMLLDYTKTLIKLIP 84
>gi|15612379|ref|NP_224032.1| flagellar biosynthesis protein FliQ [Helicobacter pylori J99]
gi|15646028|ref|NP_208210.1| flagellar biosynthesis protein FliQ [Helicobacter pylori 26695]
gi|208435289|ref|YP_002266955.1| flagellar biosynthetic protein [Helicobacter pylori G27]
gi|210135581|ref|YP_002302020.1| flagellar biosynthesis protein FliQ [Helicobacter pylori P12]
gi|217032109|ref|ZP_03437609.1| hypothetical protein HPB128_16g69 [Helicobacter pylori B128]
gi|217034566|ref|ZP_03439975.1| hypothetical protein HP9810_874g23 [Helicobacter pylori 98-10]
gi|254779932|ref|YP_003058039.1| flagellar biosynthesis protein FliQ [Helicobacter pylori B38]
gi|298735621|ref|YP_003728146.1| flagellar biosynthetic protein FliQ [Helicobacter pylori B8]
gi|308183512|ref|YP_003927639.1| flagellar biosynthesis protein FliQ [Helicobacter pylori PeCan4]
gi|60392295|sp|P0A0S3|FLIQ_HELPY RecName: Full=Flagellar biosynthetic protein FliQ
gi|60392296|sp|P0A0S4|FLIQ_HELPJ RecName: Full=Flagellar biosynthetic protein FliQ
gi|2314593|gb|AAD08461.1| flagellar biosynthetic protein (fliQ) [Helicobacter pylori 26695]
gi|2731647|gb|AAB93499.1| membrane protein [Helicobacter pylori]
gi|4155919|gb|AAD06887.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
gi|208433218|gb|ACI28089.1| flagellar biosynthetic protein [Helicobacter pylori G27]
gi|210133549|gb|ACJ08540.1| flagellar biosynthetic protein [Helicobacter pylori P12]
gi|216942986|gb|EEC22469.1| hypothetical protein HP9810_874g23 [Helicobacter pylori 98-10]
gi|216946257|gb|EEC24865.1| hypothetical protein HPB128_16g69 [Helicobacter pylori B128]
gi|254001845|emb|CAX30093.1| Flagellar biosynthesis protein FliQ [Helicobacter pylori B38]
gi|261838694|gb|ACX98460.1| flagellar biosynthetic protein [Helicobacter pylori 51]
gi|261840094|gb|ACX99859.1| flagellar biosynthetic protein [Helicobacter pylori 52]
gi|297380579|gb|ADI35466.1| flagellar biosynthetic protein FliQ [Helicobacter pylori v225d]
gi|298354810|emb|CBI65682.1| flagellar biosynthetic protein FliQ [Helicobacter pylori B8]
gi|307638074|gb|ADN80524.1| Flagellar biosynthesis protein [Helicobacter pylori 908]
gi|308062681|gb|ADO04569.1| flagellar biosynthesis protein FliQ [Helicobacter pylori Cuz20]
gi|308064173|gb|ADO06060.1| flagellar biosynthesis protein FliQ [Helicobacter pylori Sat464]
gi|308065697|gb|ADO07589.1| flagellar biosynthesis protein FliQ [Helicobacter pylori PeCan4]
gi|315585805|gb|ADU40186.1| flagellar biosynthetic protein FliQ [Helicobacter pylori 35A]
gi|317010212|gb|ADU80792.1| flagellar biosynthesis protein FliQ [Helicobacter pylori India7]
gi|317013185|gb|ADU83793.1| flagellar biosynthesis protein FliQ [Helicobacter pylori
Lithuania75]
gi|317014790|gb|ADU82226.1| flagellar biosynthesis protein FliQ [Helicobacter pylori
Gambia94/24]
gi|317178125|dbj|BAJ55914.1| flagellar biosynthesis protein FliQ [Helicobacter pylori F16]
gi|317179597|dbj|BAJ57385.1| flagellar biosynthesis protein FliQ [Helicobacter pylori F30]
gi|317181102|dbj|BAJ58888.1| flagellar biosynthesis protein FliQ [Helicobacter pylori F32]
gi|317182624|dbj|BAJ60408.1| flagellar biosynthesis protein FliQ [Helicobacter pylori F57]
gi|325996677|gb|ADZ52082.1| Flagellar biosynthesis protein [Helicobacter pylori 2018]
gi|325998268|gb|ADZ50476.1| Flagellar biosynthesis protein [Helicobacter pylori 2017]
gi|332674185|gb|AEE71002.1| flagellar biosynthetic protein FliQ [Helicobacter pylori 83]
Length = 88
Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 50/83 (60%)
Query: 3 EADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITL 62
E+ ++++A L S PVL + + +G+L++ QA TQI E+TL+FVPKI+AV L
Sbjct: 2 ESQLMKLAIETYKITLMISLPVLLAGLVVGLLVSIFQATTQINEMTLSFVPKILAVIGVL 61
Query: 63 IISAPFIGGQISSFVTLVLSRIQ 85
I++ P++ + + ++ I
Sbjct: 62 ILTMPWMTNMLLDYTKTLIKLIP 84
>gi|317133472|ref|YP_004092786.1| export protein FliQ family 3 [Ethanoligenens harbinense YUAN-3]
gi|315471451|gb|ADU28055.1| export protein FliQ family 3 [Ethanoligenens harbinense YUAN-3]
Length = 88
Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 46/86 (53%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN + E+A + P+L + +G++++ + TQI E +L F+PK++AV I
Sbjct: 1 MNVTQIAELAHRTLIMAAMLGIPLLVVCLVVGLVVSIFETATQIHEQSLNFLPKLVAVLI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
L+++ ++ Q+SSF V I
Sbjct: 61 VLLVAGGWMVSQLSSFTREVFQAIAG 86
>gi|330809225|ref|YP_004353687.1| flagellar biosynthetic protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327377333|gb|AEA68683.1| Flagellar biosynthetic protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 87
Score = 50.2 bits (119), Expect = 8e-05, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 50/87 (57%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + +L + A+ T +AP+L + + +G+L++ LQ TQIQE+TLTF+PK+I +
Sbjct: 1 MTQDFMLYALKEALLTSAMVAAPLLLAILIVGLLVSILQVATQIQEMTLTFIPKLIVTVV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
L++ ++ + F L++ S
Sbjct: 61 MLLVFGGWMLTVLKQFALSALTQAASF 87
>gi|170738278|ref|YP_001779538.1| HrpO family type III secretion protein [Burkholderia cenocepacia
MC0-3]
gi|169820466|gb|ACA95048.1| type III secretion protein, HrpO family [Burkholderia cenocepacia
MC0-3]
Length = 87
Score = 50.2 bits (119), Expect = 8e-05, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 45/82 (54%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN ++ + + L S P + + G+++AFLQA+T +Q+ T++ K+ AV
Sbjct: 1 MNTDTLIGLTSQGLLLCLYISLPAIIVSALSGLIVAFLQAITSLQDQTISHSVKLFAVIG 60
Query: 61 TLIISAPFIGGQISSFVTLVLS 82
TL+++A + G I F +LS
Sbjct: 61 TLLLTAGWGGTTILRFALRLLS 82
>gi|326794361|ref|YP_004312181.1| type III secretion protein, HrpO family [Marinomonas mediterranea
MMB-1]
gi|326545125|gb|ADZ90345.1| type III secretion protein, HrpO family [Marinomonas mediterranea
MMB-1]
Length = 86
Score = 50.2 bits (119), Expect = 8e-05, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 51/82 (62%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
D L + + M ++ SAP L A+ +G++++ LQAL Q+Q+ TL F K++AV +TL I
Sbjct: 2 DTLTLFKQGMVLVVMLSAPPLVVAVIVGVVVSLLQALLQVQDQTLPFTIKLVAVVVTLAI 61
Query: 65 SAPFIGGQISSFVTLVLSRIQS 86
+ ++G +I F T + + I +
Sbjct: 62 TGRWLGVEIIQFTTQMFNLIAT 83
>gi|76574806|gb|ABA47280.1| HrcS [Pseudomonas cichorii]
gi|182440972|dbj|BAG24097.1| HrcS [Pseudomonas cichorii]
gi|284810344|gb|ADB95954.1| putative HrcS [Pseudomonas cichorii]
gi|284810348|gb|ADB95957.1| putative HrcS [Pseudomonas cichorii]
gi|284810352|gb|ADB95960.1| putative HrcS [Pseudomonas cichorii]
gi|284810356|gb|ADB95963.1| putative HrcS [Pseudomonas cichorii]
gi|284810360|gb|ADB95966.1| putative HrcS [Pseudomonas cichorii]
gi|284810364|gb|ADB95969.1| putative HrcS [Pseudomonas cichorii]
gi|284810368|gb|ADB95972.1| putative HrcS [Pseudomonas cichorii]
gi|284810372|gb|ADB95975.1| putative HrcS [Pseudomonas cichorii]
gi|284810376|gb|ADB95978.1| putative HrcS [Pseudomonas cichorii]
gi|284810380|gb|ADB95981.1| putative HrcS [Pseudomonas cichorii]
gi|284810384|gb|ADB95984.1| putative HrcS [Pseudomonas cichorii]
gi|284810388|gb|ADB95987.1| putative HrcS [Pseudomonas cichorii]
gi|284810392|gb|ADB95990.1| putative HrcS [Pseudomonas cichorii]
gi|284810396|gb|ADB95993.1| putative HrcS [Pseudomonas cichorii]
gi|284810400|gb|ADB95996.1| putative HrcS [Pseudomonas cichorii]
gi|284810404|gb|ADB95999.1| putative HrcS [Pseudomonas cichorii]
gi|284810408|gb|ADB96002.1| putative HrcS [Pseudomonas cichorii]
gi|284810412|gb|ADB96005.1| putative HrcS [Pseudomonas cichorii]
gi|284810416|gb|ADB96008.1| putative HrcS [Pseudomonas cichorii]
Length = 86
Score = 50.2 bits (119), Expect = 8e-05, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 47/80 (58%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
+ L + + AM ++ SAP L A+ +G++ + LQA+ Q+Q+ TL F K++AV + L +
Sbjct: 2 ETLTLFKQAMLLVVVLSAPALIVAVIVGVITSLLQAVMQLQDQTLPFAIKLVAVGVALAL 61
Query: 65 SAPFIGGQISSFVTLVLSRI 84
+ +IG ++ L + I
Sbjct: 62 TGRWIGIELMQLAYLSFNMI 81
>gi|238799425|ref|ZP_04642854.1| Flagellar biosynthetic protein FliQ [Yersinia mollaretii ATCC
43969]
gi|238716729|gb|EEQ08616.1| Flagellar biosynthetic protein FliQ [Yersinia mollaretii ATCC
43969]
Length = 83
Score = 50.2 bits (119), Expect = 8e-05, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 55/82 (67%)
Query: 7 LEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISA 66
+ + AM L+ +AP+L +A+ G++++ LQA TQI E+TL+F+PKI+AVF T++I+
Sbjct: 1 MALGVEAMKIALALAAPLLLAALISGLIVSLLQAATQINEMTLSFIPKILAVFTTMVIAG 60
Query: 67 PFIGGQISSFVTLVLSRIQSSL 88
P++ I ++ + + + + +
Sbjct: 61 PWMLNLILDYMRNLFTSLPTLI 82
>gi|71737453|ref|YP_274732.1| type III secretion component [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|71558006|gb|AAZ37217.1| type III secretion component, putative [Pseudomonas syringae pv.
phaseolicola 1448A]
Length = 89
Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 46/85 (54%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + L + A+ T+L SAP L A+ +G+ + LQAL QIQ+ TL V K++AV +
Sbjct: 1 MGQDVFLSLMNKALMTVLLLSAPALVVAIVVGLSVGLLQALPQIQDQTLPQVVKLVAVLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
++ P + GQ++ VL
Sbjct: 61 VIVFVGPLLAGQVAELGNQVLDNFP 85
>gi|295111381|emb|CBL28131.1| flagellar biosynthetic protein FliQ [Synergistetes bacterium
SGP1]
Length = 91
Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats.
Identities = 32/87 (36%), Positives = 54/87 (62%)
Query: 2 NEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFIT 61
+ ++ ++WT+L S PVL AM +G+LI LQ T IQE TL F+PKI+AVFI
Sbjct: 4 TALSLFDLLSQSIWTMLVVSLPVLLVAMSVGLLIGILQTATSIQEQTLIFIPKILAVFIC 63
Query: 62 LIISAPFIGGQISSFVTLVLSRIQSSL 88
+I+ +P++G ++ +L +++ +
Sbjct: 64 IILLSPWMGQRMLVMTREILGQLERFI 90
>gi|123443726|ref|YP_001007697.1| type III secretion apparatus protein [Yersinia enterocolitica
subsp. enterocolitica 8081]
gi|15088599|gb|AAK84110.1|AF369954_8 YsaS [Yersinia enterocolitica]
gi|122090687|emb|CAL13563.1| type III secretion apparatus protein [Yersinia enterocolitica
subsp. enterocolitica 8081]
Length = 89
Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 48/79 (60%)
Query: 4 ADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLI 63
+++ + AM I+ SA + A +G+LI +Q +TQ+QE TL F K++AVF +L
Sbjct: 2 ENIIYASNKAMLLIVLLSAIPVMVATVVGLLIGLIQTVTQLQEQTLPFGIKLLAVFGSLF 61
Query: 64 ISAPFIGGQISSFVTLVLS 82
+ + ++ ++ ++ T VL+
Sbjct: 62 MISGWLSDKVMNYATEVLA 80
>gi|223039969|ref|ZP_03610251.1| flagellar biosynthetic protein FliQ [Campylobacter rectus RM3267]
gi|222878689|gb|EEF13788.1| flagellar biosynthetic protein FliQ [Campylobacter rectus RM3267]
Length = 89
Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 3 EADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPK-IIAVFIT 61
++ ++E+ L S P+L + + G++I+ QA TQI E+TL+FVPK I+ V +
Sbjct: 2 QSTLIELGIETFKIALYLSFPMLLAGLSAGLIISIFQATTQINEMTLSFVPKIILVVVVV 61
Query: 62 LIISAPFIGGQISSFVTLVLSRIQSSL 88
+I P++ + F T ++ I + +
Sbjct: 62 IIFLMPWMVSMMVDFTTRMIEFIPNFV 88
>gi|187918148|ref|YP_001883711.1| flagellar biosynthetic protein FliQ [Borrelia hermsii DAH]
gi|119860996|gb|AAX16791.1| flagellar biosynthetic protein FliQ [Borrelia hermsii DAH]
Length = 87
Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/86 (38%), Positives = 57/86 (66%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M ++ + R A+ I+ SAP+L A+ +G+L++ QA+T IQ+ TL+F+PKII + +
Sbjct: 1 MTTGQIIYLIRIAVENIIILSAPMLIMALIVGLLVSIFQAVTSIQDQTLSFIPKIIIILL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
TL+I P+I ++ F +V S+IQ+
Sbjct: 61 TLVIFGPWILKKLMQFAFIVFSQIQN 86
>gi|254442080|ref|ZP_05055556.1| Bacterial export protein, family 3 [Verrucomicrobiae bacterium
DG1235]
gi|198256388|gb|EDY80696.1| Bacterial export protein, family 3 [Verrucomicrobiae bacterium
DG1235]
Length = 71
Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 40/67 (59%)
Query: 19 SSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVT 78
+P+L + + +G++I+ +Q++T IQE TL+F PK+ AV LI+ + ++ + F
Sbjct: 1 MLVSPILITTIVVGLVISLIQSVTSIQEQTLSFAPKLFAVGGVLIVGSSWLLKTLMGFTI 60
Query: 79 LVLSRIQ 85
V +I
Sbjct: 61 EVYQKIP 67
>gi|22854669|gb|AAN09753.1|AF426456_1 SpaQ [primary endosymbiont of Sitophilus zeamais]
Length = 86
Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 38/72 (52%)
Query: 10 ARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
A++ +L +A + A +G+L+ Q + Q+QE TL F K+++V + L + + +
Sbjct: 8 GNKALYLVLIMAAGPIIVATLVGLLVGLCQTVLQLQEQTLPFGIKLLSVTLCLFLLSGWY 67
Query: 70 GGQISSFVTLVL 81
G + F V+
Sbjct: 68 GETLLQFGHEVI 79
>gi|330876193|gb|EGH10342.1| type III secretion component [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
gi|330963709|gb|EGH63969.1| type III secretion component [Pseudomonas syringae pv. actinidiae
str. M302091]
Length = 89
Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 48/85 (56%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + L + A+ T+L SAP L A+ +G+ + LQALTQIQ+ TL V K++AV +
Sbjct: 1 MGQDVFLSLMNKALMTVLLLSAPALIVAIVVGLSVGLLQALTQIQDQTLPQVVKLVAVLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
++ P + GQ++ LVL
Sbjct: 61 VIVFVGPLLAGQVAELGNLVLDNFP 85
>gi|51103120|gb|AAT96263.1| HrcS [Pseudomonas viridiflava]
gi|51103162|gb|AAT96304.1| HrcS [Pseudomonas viridiflava]
gi|51103203|gb|AAT96344.1| HrcS [Pseudomonas viridiflava]
Length = 86
Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 47/80 (58%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
+ L + + AM ++ SAP L A+ +G++ + LQA+ Q+Q+ TL F K++AV + L +
Sbjct: 2 ETLTLFKQAMMLVVVLSAPPLIVAVVVGVITSLLQAVMQLQDQTLPFAIKLVAVGLALAL 61
Query: 65 SAPFIGGQISSFVTLVLSRI 84
+ +IG ++ L S I
Sbjct: 62 TGRWIGIELMQLAYLSFSMI 81
>gi|170699431|ref|ZP_02890476.1| type III secretion protein, HrpO family [Burkholderia ambifaria
IOP40-10]
gi|171319945|ref|ZP_02909021.1| type III secretion protein, HrpO family [Burkholderia ambifaria
MEX-5]
gi|172063771|ref|YP_001811422.1| HrpO family type III secretion protein [Burkholderia ambifaria
MC40-6]
gi|170135687|gb|EDT03970.1| type III secretion protein, HrpO family [Burkholderia ambifaria
IOP40-10]
gi|171094801|gb|EDT39839.1| type III secretion protein, HrpO family [Burkholderia ambifaria
MEX-5]
gi|171996288|gb|ACB67206.1| type III secretion protein, HrpO family [Burkholderia ambifaria
MC40-6]
Length = 92
Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 50/84 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + +L++ R A+ +L S P++ A G+++A LQA+TQ+Q+ + ++IAV +
Sbjct: 1 MTSSTILDLTRQALMLVLLLSLPIVLIATVTGLVVAILQAVTQVQDANIGIAVRLIAVMV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
L++ + ++G ++ F L R+
Sbjct: 61 ALVLLSGWLGSEVLRFAQQALERM 84
>gi|294636881|ref|ZP_06715211.1| flagellar biosynthetic protein FliQ [Edwardsiella tarda ATCC
23685]
gi|291089911|gb|EFE22472.1| flagellar biosynthetic protein FliQ [Edwardsiella tarda ATCC
23685]
Length = 83
Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 54/82 (65%)
Query: 7 LEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISA 66
+ + AM L+ + P+L +A+ G+LI+ LQA TQI E+TL+F+PKI+AVF TL+++
Sbjct: 1 MALGYQAMKVGLALATPLLLAALISGLLISLLQAATQINEMTLSFIPKILAVFATLVVAG 60
Query: 67 PFIGGQISSFVTLVLSRIQSSL 88
P++ + ++ + S + + +
Sbjct: 61 PWMLSLLLDYMRTLFSSLPNLI 82
>gi|134294020|ref|YP_001117756.1| HrpO family type III secretion protein [Burkholderia
vietnamiensis G4]
gi|134137177|gb|ABO58291.1| type III secretion protein, HrpO family [Burkholderia
vietnamiensis G4]
Length = 92
Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 51/84 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + +L++ R A+ +L S P++ A G+++A LQA+TQ+Q+ + V ++IAV +
Sbjct: 1 MTSSTILDLTRQALMLVLLLSLPIVAIATVTGLVVAILQAVTQVQDANIGIVVRLIAVMV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
L++ + ++G ++ F L R+
Sbjct: 61 ALVLLSGWLGSEVLRFAQQALERM 84
>gi|163750539|ref|ZP_02157777.1| flagellar biosynthetic protein FliQ [Shewanella benthica KT99]
gi|294140214|ref|YP_003556192.1| flagellar biosynthetic protein FliQ [Shewanella violacea DSS12]
gi|161329694|gb|EDQ00683.1| flagellar biosynthetic protein FliQ [Shewanella benthica KT99]
gi|293326683|dbj|BAJ01414.1| flagellar biosynthetic protein FliQ [Shewanella violacea DSS12]
Length = 89
Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 45/85 (52%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN +++I R A+ I++ + ++ + +G+++A QA T I E TL+F+P+++
Sbjct: 1 MNPESLVDIFREALSVIVTIVSLIIVPGLVIGLVVAVFQAATSINEQTLSFLPRLLTTLF 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
L+ + + F +++ I
Sbjct: 61 ALMFLGHTLIQTMMEFFVQMVNMIP 85
>gi|78064697|ref|YP_367466.1| flagellar biosynthesis protein FliQ [Burkholderia sp. 383]
gi|77965442|gb|ABB06822.1| Flagellar biosynthesis protein FliQ [Burkholderia sp. 383]
Length = 90
Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 53/86 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ +A AM L +AP+L A+ +G++++ QA TQI E TL+F+PK++AV +
Sbjct: 1 MTPEQVMTLAHQAMMVGLLLAAPLLLVALVVGLVVSLFQAATQINESTLSFIPKLLAVAV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
TL+I+ P++ + ++ L + +
Sbjct: 61 TLVIAGPWMMTTMLDYLRQTLLHVAT 86
>gi|130855425|gb|ABO32591.1| SpaQ [Sodalis endosymbiont of Craterina melbae]
Length = 86
Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 38/74 (51%)
Query: 10 ARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
A++ +L +A + A +G+L+ Q + Q+QE TL F K+++V + L + + +
Sbjct: 8 GNKALYLVLIMAAGPIIVATLVGLLVGLCQTVLQLQEQTLPFGIKLLSVTLCLFLLSGWY 67
Query: 70 GGQISSFVTLVLSR 83
G + F V+
Sbjct: 68 GETLLQFGHEVIRM 81
>gi|260899946|ref|ZP_05908341.1| flagellar biosynthesis protein FliQ [Vibrio parahaemolyticus
AQ4037]
gi|308107259|gb|EFO44799.1| flagellar biosynthesis protein FliQ [Vibrio parahaemolyticus
AQ4037]
Length = 81
Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLT 50
M +E+ R A+W +L ++ ++ +G+++A QA T I E TL+
Sbjct: 1 MTPEMFVELFREALWMVLIMVCAIIIPSLLIGLVVAIFQAATSINEQTLS 50
>gi|108563770|ref|YP_628086.1| flagellar biosynthesis protein FliQ [Helicobacter pylori HPAG1]
gi|107837543|gb|ABF85412.1| flagellar biosynthetic protein [Helicobacter pylori HPAG1]
Length = 88
Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 50/83 (60%)
Query: 3 EADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITL 62
E+ ++++A L S PVL + + +G+L++ QA TQI E+TL+FVPKI+AV L
Sbjct: 2 ESQLMKLAIETYKITLMISLPVLLAGLVVGLLVSIFQATTQINEMTLSFVPKILAVIGVL 61
Query: 63 IISAPFIGGQISSFVTLVLSRIQ 85
I++ P++ + + ++ I
Sbjct: 62 ILTMPWMTNMLLDYTQTLIKLIP 84
>gi|170725984|ref|YP_001760010.1| flagellar biosynthetic protein FliQ [Shewanella woodyi ATCC
51908]
gi|169811331|gb|ACA85915.1| flagellar biosynthetic protein FliQ [Shewanella woodyi ATCC
51908]
Length = 89
Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 45/85 (52%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ +++I R A+ I++ + ++ + +G+++A QA T I E TL+F+P+++
Sbjct: 1 MSPESLVDIFREALSVIVTIVSLIILPGLVIGLIVAVFQAATSINEQTLSFLPRLLTTLF 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
L+ + + F +++ I
Sbjct: 61 ALMFLGHTLIQTMMEFFFEMVNMIP 85
>gi|269836608|ref|YP_003318836.1| flagellar biosynthetic protein FliQ [Sphaerobacter thermophilus
DSM 20745]
gi|269785871|gb|ACZ38014.1| flagellar biosynthetic protein FliQ [Sphaerobacter thermophilus
DSM 20745]
Length = 89
Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 59/85 (69%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+E VLE+ R ++ T+L AP+L +A+ +G++++ QA+TQ+ E TLTFVPK++ +F+
Sbjct: 1 MSEMLVLELTRDSIATLLLVLAPLLLAALVVGLVVSIFQAVTQVNEATLTFVPKMVVMFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
L+++ P++ Q+ F +L+ +
Sbjct: 61 VLLVAGPWMADQLVRFTVRLLTLLP 85
>gi|46445835|ref|YP_007200.1| type III secretion inner membrane protein SctS [Candidatus
Protochlamydia amoebophila UWE25]
gi|46399476|emb|CAF22925.1| probable type III secretion inner membrane protein SctS
[Candidatus Protochlamydia amoebophila UWE25]
Length = 78
Score = 49.5 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 43/67 (64%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M ++ V+++A M IL SAP + +MF GI++A QA TQIQE TL+F K++AV +
Sbjct: 1 MFQSQVVQLAYQGMLLILILSAPPILVSMFFGIIVAIFQAATQIQEQTLSFTIKLVAVTL 60
Query: 61 TLIISAP 67
TL+
Sbjct: 61 TLMFLGG 67
>gi|284007165|emb|CBA72449.1| flagellar biosynthesis protein FliQ [Arsenophonus nasoniae]
Length = 84
Score = 49.5 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 54/83 (65%)
Query: 6 VLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIIS 65
++ + M L+ +AP+L +A+ G++I+ LQA TQI E+TL+F+PKIIAVFIT +++
Sbjct: 1 MMGLGIDGMKVALALAAPLLLAALISGLIISLLQAATQINEMTLSFIPKIIAVFITAVVA 60
Query: 66 APFIGGQISSFVTLVLSRIQSSL 88
P++ + +++++ +
Sbjct: 61 GPWMLQLFIEYTRQLITQLPQLI 83
>gi|227873534|ref|ZP_03991779.1| flagellar biosynthesis protein FliQ [Oribacterium sinus F0268]
gi|227840624|gb|EEJ51009.1| flagellar biosynthesis protein FliQ [Oribacterium sinus F0268]
Length = 88
Score = 49.5 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 47/87 (54%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
++ A++L+I L + P L +M LGI+IA QA T I E TLTFVPK+IA+ I
Sbjct: 2 LDSAEILDIMNQTFMLSLRIAMPFLLVSMILGIVIAIFQAATSINEQTLTFVPKLIAIII 61
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSS 87
L + + + F T+++ +
Sbjct: 62 MLTVLGGTLLKTMQDFFTMIMKMVAGG 88
>gi|153949888|ref|YP_001399617.1| flagellar biosynthetic protein FliQ [Yersinia pseudotuberculosis
IP 31758]
gi|152961383|gb|ABS48844.1| flagellar biosynthetic protein FliQ [Yersinia pseudotuberculosis
IP 31758]
Length = 90
Score = 49.5 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 43/83 (51%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +I + +L S + ++ +G+L++ QA TQI E TL+F+P+++ +
Sbjct: 2 MTTDIAGDIIAMGLHLVLMISIVAIVPSLLIGLLVSIFQATTQINEQTLSFLPRLVMTML 61
Query: 61 TLIISAPFIGGQISSFVTLVLSR 83
LI + ++ ++S F + +
Sbjct: 62 VLIFAGKWMMTKLSDFTVSIFQQ 84
>gi|197286516|ref|YP_002152388.1| type III secretion system protein [Proteus mirabilis HI4320]
gi|227357590|ref|ZP_03841943.1| flagellar biosynthesis protein FliQ [Proteus mirabilis ATCC
29906]
gi|194684003|emb|CAR45293.1| putative type III secretion system protein [Proteus mirabilis
HI4320]
gi|227162300|gb|EEI47304.1| flagellar biosynthesis protein FliQ [Proteus mirabilis ATCC
29906]
Length = 84
Score = 49.5 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
D++ A A++ I+ SA + A F+G+LI LQ +TQIQE TL F K++ VF+ L++
Sbjct: 2 DMVYAANKAIYLIILLSAAPIAIATFIGLLIGLLQTITQIQEQTLPFGVKLVGVFVCLLM 61
Query: 65 SAPFIGGQISSFVTLVLS 82
++G ++ + +L+
Sbjct: 62 MMGWMGDKLLIYAKEMLT 79
>gi|242309972|ref|ZP_04809127.1| flagellar biosynthesis protein FliQ [Helicobacter pullorum MIT
98-5489]
gi|239523269|gb|EEQ63135.1| flagellar biosynthesis protein FliQ [Helicobacter pullorum MIT
98-5489]
Length = 88
Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 50/86 (58%)
Query: 3 EADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITL 62
EA ++ +A L S P+L + +G+LI+ QA TQI E+TLTFVPKI+AV + +
Sbjct: 2 EAQLMNLAIETYKITLVLSLPMLLVGLVIGLLISIFQATTQINEMTLTFVPKILAVIVVI 61
Query: 63 IISAPFIGGQISSFVTLVLSRIQSSL 88
I + P++ + F + + + + +
Sbjct: 62 IFTMPWMLNMLIDFTARIFNMMPTFI 87
>gi|34498063|ref|NP_902278.1| type III secretion apparatus protein EscS [Chromobacterium
violaceum ATCC 12472]
gi|34103918|gb|AAQ60278.1| type III secretion apparatus protein EscS [Chromobacterium
violaceum ATCC 12472]
Length = 89
Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 56/84 (66%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+EA + ++A MW +L S PV+ A F+G+L++ +QALTQ+Q+ T+ F+ K++AV +
Sbjct: 1 MSEAMIAQLATQMMWLVLLLSLPVVVVASFVGVLVSLVQALTQVQDQTVQFLVKLLAVSV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
TL ++ ++G + ++ L +I
Sbjct: 61 TLAMTYHWMGDVLLNYAGLAFDQI 84
>gi|332162919|ref|YP_004299496.1| Lateral flagellar export/assembly protein [Yersinia
enterocolitica subsp. palearctica 105.5R(r)]
gi|325667149|gb|ADZ43793.1| Lateral flagellar export/assembly protein [Yersinia
enterocolitica subsp. palearctica 105.5R(r)]
gi|330862336|emb|CBX72496.1| flagellar biosynthetic protein fliQ [Yersinia enterocolitica
W22703]
Length = 90
Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 43/83 (51%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +I A + +L S + ++ G+L++ QA TQI E TL+F+P+++ +
Sbjct: 2 MTTDIAGDIIAAGLHLVLIISVVAIIPSLLTGLLVSIFQATTQINEQTLSFLPRLVMTML 61
Query: 61 TLIISAPFIGGQISSFVTLVLSR 83
LI + ++ ++S F + +
Sbjct: 62 VLIFAGKWMMTKLSDFTIAIFQQ 84
>gi|322432984|ref|YP_004210233.1| export protein FliQ family 3 [Acidobacterium sp. MP5ACTX9]
gi|321165211|gb|ADW70915.1| export protein FliQ family 3 [Acidobacterium sp. MP5ACTX9]
Length = 89
Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 48/82 (58%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + R + ++ +AP+L A+ + +++ +Q LT +Q+ TL+ VP+++A
Sbjct: 1 MGADAVVAMGRMMLEEVIILTAPILLVAIAVSLVVNIIQVLTSLQDQTLSTVPRLLATGA 60
Query: 61 TLIISAPFIGGQISSFVTLVLS 82
TL I P++ IS++ L+ S
Sbjct: 61 TLFILMPWMWRHISTYTLLLFS 82
>gi|322379080|ref|ZP_08053483.1| flagellar biosynthesis protein FliQ [Helicobacter suis HS1]
gi|322379944|ref|ZP_08054221.1| flagellar biosynthesis protein FliQ [Helicobacter suis HS5]
gi|321147642|gb|EFX42265.1| flagellar biosynthesis protein FliQ [Helicobacter suis HS5]
gi|321148572|gb|EFX43069.1| flagellar biosynthesis protein FliQ [Helicobacter suis HS1]
Length = 97
Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 50/83 (60%)
Query: 3 EADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITL 62
EA ++++A L +S PVL + +G+L++ QA TQI E+TL+FVPKI+AV +
Sbjct: 11 EAQLMKLAIETYKITLMTSLPVLLVGLVVGLLVSIFQATTQINEMTLSFVPKILAVIAVI 70
Query: 63 IISAPFIGGQISSFVTLVLSRIQ 85
I++ P++ + + + + I
Sbjct: 71 ILTMPWMLNMLLDYTSTLFKLIP 93
>gi|217077268|ref|YP_002334986.1| flagellar biosynthetic protein FliQ [Thermosipho africanus
TCF52B]
gi|217037123|gb|ACJ75645.1| flagellar biosynthetic protein FliQ [Thermosipho africanus
TCF52B]
Length = 88
Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 47/83 (56%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M L++ + T+L+ P L ++ +G+LI+ QA TQI E TLTF P+II +F+
Sbjct: 1 MTIEVFLDVFGLGIKTLLTVILPPLLISLIVGLLISIFQAATQINEQTLTFAPRIIVLFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSR 83
TL+ ++ Q+ ++++
Sbjct: 61 TLLFLGGWMIQQVIDLAREIITK 83
>gi|238762377|ref|ZP_04623348.1| Lateral flagellar export/assembly protein (FliQ-like) [Yersinia
kristensenii ATCC 33638]
gi|238699362|gb|EEP92108.1| Lateral flagellar export/assembly protein (FliQ-like) [Yersinia
kristensenii ATCC 33638]
Length = 90
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 42/83 (50%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +I + +L S + ++ G+L++ QA TQI E TL+F+P+++ +
Sbjct: 2 MTTDIAGDIIATGLHLVLIISVVAIIPSLLTGLLVSIFQATTQINEQTLSFLPRLVMTML 61
Query: 61 TLIISAPFIGGQISSFVTLVLSR 83
LI + ++ ++S F + +
Sbjct: 62 VLIFAGKWMMTKLSDFTIAIFQQ 84
>gi|254255058|ref|ZP_04948375.1| Type III secretory pathway component EscS [Burkholderia dolosa
AUO158]
gi|124899703|gb|EAY71546.1| Type III secretory pathway component EscS [Burkholderia dolosa
AUO158]
Length = 84
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 41/79 (51%)
Query: 4 ADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLI 63
DV + ++ L + A +G+++ +Q +TQ+QE TL+F K++AV + L
Sbjct: 2 GDVAYASNKGLYITLMLIVGPVAVATIVGLVVGLIQTVTQLQEQTLSFGVKVLAVSLCLF 61
Query: 64 ISAPFIGGQISSFVTLVLS 82
+ A + G + +F ++
Sbjct: 62 LLAGWYGEVMLAFSREMIG 80
>gi|167623390|ref|YP_001673684.1| flagellar biosynthetic protein FliQ [Shewanella halifaxensis
HAW-EB4]
gi|167353412|gb|ABZ76025.1| flagellar biosynthetic protein FliQ [Shewanella halifaxensis
HAW-EB4]
Length = 89
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 45/85 (52%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ +++I R A+ I+ + ++ + +G+++A QA T I E TL+F+P+++ +
Sbjct: 1 MSPEALIDIFREALAVIVIIVSMIIVPGLIIGLVVAVFQAATSINEQTLSFLPRLLTTLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
L++ + + F ++ I
Sbjct: 61 ALMLMGHMLVQMMMDFFFQMVDMIP 85
>gi|238023705|ref|YP_002907937.1| type III secretion-associated protein [Burkholderia glumae BGR1]
gi|237878370|gb|ACR30702.1| Type III secretion-associated protein [Burkholderia glumae BGR1]
Length = 87
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 45/81 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ ++ M L+ S P + A +G+ ++F+QA+T +Q+ TL V K++AV I
Sbjct: 1 MDVDSLIRFTTEGMLLCLTVSLPPVIVAAVVGLGVSFVQAITSLQDQTLPQVIKLVAVTI 60
Query: 61 TLIISAPFIGGQISSFVTLVL 81
T++I+AP + F ++
Sbjct: 61 TIVIAAPVCCAAVLHFANQLM 81
>gi|190574228|ref|YP_001972073.1| putative flagellar biosynthetic protein FliQ [Stenotrophomonas
maltophilia K279a]
gi|190012150|emb|CAQ45773.1| putative flagellar biosynthetic protein FliQ [Stenotrophomonas
maltophilia K279a]
Length = 89
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 44/88 (50%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ L R + T+L + P+L + + +G+++ +QA TQ+ E T+ FV K A+
Sbjct: 1 MSPELALTELRGGLITVLWVAGPLLLTVLVVGVVVGVVQAATQLNEPTIAFVAKAAALTA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L + G + F TL+ RI +
Sbjct: 61 VLFALGSLLIGHLVEFTTLLFQRIPHLI 88
>gi|188528184|ref|YP_001910871.1| flagellar biosynthesis protein FliQ [Helicobacter pylori Shi470]
gi|308185179|ref|YP_003929312.1| flagellar biosynthesis protein FliQ [Helicobacter pylori SJM180]
gi|188144424|gb|ACD48841.1| flagellar biosynthesis protein FliQ [Helicobacter pylori Shi470]
gi|308061099|gb|ADO02995.1| flagellar biosynthesis protein FliQ [Helicobacter pylori SJM180]
Length = 83
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 47/79 (59%)
Query: 7 LEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISA 66
+++A L S PVL + + +G+L++ QA TQI E+TL+FVPKI+AV LI++
Sbjct: 1 MKLAIETYKITLMISLPVLLAGLVVGLLVSIFQATTQINEMTLSFVPKILAVIGVLILTM 60
Query: 67 PFIGGQISSFVTLVLSRIQ 85
P++ + + ++ I
Sbjct: 61 PWMTNMLLDYTKTLIKLIP 79
>gi|194365646|ref|YP_002028256.1| export protein FliQ family 3 [Stenotrophomonas maltophilia
R551-3]
gi|194348450|gb|ACF51573.1| export protein FliQ family 3 [Stenotrophomonas maltophilia
R551-3]
Length = 89
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 43/88 (48%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M L R + T+L + P+L + + +G+++ +QA TQ+ E T+ FV K A+
Sbjct: 1 MTPELALTELRGGLITVLWVAGPLLLTVLVVGVVVGVVQAATQLNEPTIAFVAKAAALTA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L + G + F TL+ RI +
Sbjct: 61 VLFALGSLLIGHLVEFTTLLFQRIPHLI 88
>gi|213026790|ref|ZP_03341237.1| secretory protein (associated with virulence) [Salmonella
enterica subsp. enterica serovar Typhi str. 404ty]
Length = 70
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 32/63 (50%)
Query: 19 SSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVT 78
S A +G+L+ Q +TQ+QE TL F K++ V + L + + + G + S+
Sbjct: 1 ILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFLLSGWYGEVLLSYGR 60
Query: 79 LVL 81
V+
Sbjct: 61 QVI 63
>gi|157376187|ref|YP_001474787.1| flagellar biosynthetic protein FliQ [Shewanella sediminis
HAW-EB3]
gi|157318561|gb|ABV37659.1| flagellar biosynthetic protein FliQ [Shewanella sediminis
HAW-EB3]
Length = 89
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 45/85 (52%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN +++I R A+ I++ + ++ + +G+++A QA T I E TL+F+P+++
Sbjct: 1 MNPESLVDIFREALTVIVTIVSLIIVPGLIIGLVVAVFQAATSINEQTLSFLPRLLTTLF 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
L+ + + F +++ I
Sbjct: 61 ALMFLGHTLIQTMMEFFIQMVNMIP 85
>gi|218927895|ref|YP_002345770.1| putative flagellar assembly protein [Yersinia pestis CO92]
gi|115346506|emb|CAL19382.1| putative flagellar assembly protein [Yersinia pestis CO92]
Length = 89
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 43/83 (51%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +I + +L S + ++ +G+L++ QA TQI E TL+F+P+++ +
Sbjct: 1 MTTDIAGDIIAMGLHLVLMISIVAIVPSLLIGLLVSIFQATTQINEQTLSFLPRLVMTML 60
Query: 61 TLIISAPFIGGQISSFVTLVLSR 83
LI + ++ ++S F + +
Sbjct: 61 VLIFAGKWMMIKLSDFTVSIFQQ 83
>gi|22127345|ref|NP_670768.1| hypothetical protein y3470 [Yersinia pestis KIM 10]
gi|45442779|ref|NP_994318.1| flagellar biosynthesis/type III secretory pathway protein
[Yersinia pestis biovar Microtus str. 91001]
gi|51597654|ref|YP_071845.1| flagellar assembly/export protein, fliQ [Yersinia
pseudotuberculosis IP 32953]
gi|108809076|ref|YP_652992.1| putative flagellar assembly protein [Yersinia pestis Antiqua]
gi|108810731|ref|YP_646498.1| flagellar assembly protein [Yersinia pestis Nepal516]
gi|145597800|ref|YP_001161876.1| flagellar assembly protein [Yersinia pestis Pestoides F]
gi|150260266|ref|ZP_01916994.1| lateral flagellar export and assembly protein [Yersinia pestis
CA88-4125]
gi|162419711|ref|YP_001604862.1| flagellar biosynthetic protein FliQ [Yersinia pestis Angola]
gi|165924852|ref|ZP_02220684.1| flagellar biosynthetic protein FliQ [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165939032|ref|ZP_02227584.1| flagellar biosynthetic protein FliQ [Yersinia pestis biovar
Orientalis str. IP275]
gi|166008751|ref|ZP_02229649.1| flagellar biosynthetic protein FliQ [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166211991|ref|ZP_02238026.1| flagellar biosynthetic protein FliQ [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167399325|ref|ZP_02304849.1| flagellar biosynthetic protein FliQ [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167419024|ref|ZP_02310777.1| flagellar biosynthetic protein FliQ [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167425099|ref|ZP_02316852.1| flagellar biosynthetic protein FliQ [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|167466358|ref|ZP_02331062.1| putative flagellar assembly protein [Yersinia pestis FV-1]
gi|170022954|ref|YP_001719459.1| flagellar biosynthetic protein FliQ [Yersinia pseudotuberculosis
YPIII]
gi|186896788|ref|YP_001873900.1| flagellar biosynthetic protein FliQ [Yersinia pseudotuberculosis
PB1/+]
gi|229837391|ref|ZP_04457554.1| Flagellar biosynthesis protein fliQ [Yersinia pestis Pestoides A]
gi|229840604|ref|ZP_04460763.1| Flagellar biosynthesis protein fliQ [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229842845|ref|ZP_04462997.1| Flagellar biosynthesis protein fliQ [Yersinia pestis biovar
Orientalis str. India 195]
gi|229900928|ref|ZP_04516052.1| Flagellar biosynthesis protein fliQ [Yersinia pestis Nepal516]
gi|270487691|ref|ZP_06204765.1| flagellar biosynthetic protein FliQ [Yersinia pestis KIM D27]
gi|21960428|gb|AAM87019.1|AE013950_4 hypothetical [Yersinia pestis KIM 10]
gi|45437645|gb|AAS63195.1| Flagellar biosynthesis/type III secretory pathway protein
[Yersinia pestis biovar Microtus str. 91001]
gi|51590936|emb|CAH22592.1| Putative flagellar assembly/export protein, fliQ [Yersinia
pseudotuberculosis IP 32953]
gi|108774379|gb|ABG16898.1| flagellar assembly protein [Yersinia pestis Nepal516]
gi|108780989|gb|ABG15047.1| putative flagellar assembly protein [Yersinia pestis Antiqua]
gi|145209496|gb|ABP38903.1| flagellar assembly protein [Yersinia pestis Pestoides F]
gi|149289674|gb|EDM39751.1| lateral flagellar export and assembly protein [Yersinia pestis
CA88-4125]
gi|162352526|gb|ABX86474.1| flagellar biosynthetic protein FliQ [Yersinia pestis Angola]
gi|165912988|gb|EDR31613.1| flagellar biosynthetic protein FliQ [Yersinia pestis biovar
Orientalis str. IP275]
gi|165923052|gb|EDR40203.1| flagellar biosynthetic protein FliQ [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165992090|gb|EDR44391.1| flagellar biosynthetic protein FliQ [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166206737|gb|EDR51217.1| flagellar biosynthetic protein FliQ [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166963018|gb|EDR59039.1| flagellar biosynthetic protein FliQ [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167051829|gb|EDR63237.1| flagellar biosynthetic protein FliQ [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167055862|gb|EDR65643.1| flagellar biosynthetic protein FliQ [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|169749488|gb|ACA67006.1| flagellar biosynthetic protein FliQ [Yersinia pseudotuberculosis
YPIII]
gi|186699814|gb|ACC90443.1| flagellar biosynthetic protein FliQ [Yersinia pseudotuberculosis
PB1/+]
gi|229682267|gb|EEO78359.1| Flagellar biosynthesis protein fliQ [Yersinia pestis Nepal516]
gi|229690112|gb|EEO82169.1| Flagellar biosynthesis protein fliQ [Yersinia pestis biovar
Orientalis str. India 195]
gi|229696970|gb|EEO87017.1| Flagellar biosynthesis protein fliQ [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229705514|gb|EEO91524.1| Flagellar biosynthesis protein fliQ [Yersinia pestis Pestoides A]
gi|270336195|gb|EFA46972.1| flagellar biosynthetic protein FliQ [Yersinia pestis KIM D27]
gi|320016728|gb|ADW00300.1| Flagellar biosynthesis protein fliQ [Yersinia pestis biovar
Medievalis str. Harbin 35]
Length = 90
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 43/83 (51%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +I + +L S + ++ +G+L++ QA TQI E TL+F+P+++ +
Sbjct: 2 MTTDIAGDIIAMGLHLVLMISIVAIVPSLLIGLLVSIFQATTQINEQTLSFLPRLVMTML 61
Query: 61 TLIISAPFIGGQISSFVTLVLSR 83
LI + ++ ++S F + +
Sbjct: 62 VLIFAGKWMMIKLSDFTVSIFQQ 84
>gi|254200991|ref|ZP_04907356.1| type III secretion system protein BsaX [Burkholderia mallei FMH]
gi|254204955|ref|ZP_04911308.1| type III secretion system protein BsaX [Burkholderia mallei JHU]
gi|147748603|gb|EDK55678.1| type III secretion system protein BsaX [Burkholderia mallei FMH]
gi|147754541|gb|EDK61605.1| type III secretion system protein BsaX [Burkholderia mallei JHU]
Length = 97
Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 45/81 (55%)
Query: 2 NEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFIT 61
A++ A+ ++ A + A +G+ I Q +TQ+QE TL F K++AVF
Sbjct: 13 TMAELTYAGDKAILLVILLCAAPVAVATVVGLAIGLFQTVTQLQEQTLPFGLKMLAVFGC 72
Query: 62 LIISAPFIGGQISSFVTLVLS 82
L++ + + GG++ +F T +LS
Sbjct: 73 LMMLSGWFGGKLLAFATEMLS 93
>gi|152975181|ref|YP_001374698.1| flagellar biosynthesis protein FliQ [Bacillus cereus subsp.
cytotoxis NVH 391-98]
gi|152023933|gb|ABS21703.1| export protein FliQ family 3 [Bacillus cytotoxicus NVH 391-98]
Length = 91
Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 54/88 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN + +++I ++ + + P+ +M + ++IA + A+ QIQE TLTF+PK+ ++ +
Sbjct: 1 MNTSPIIDIFQSFFYKGVMILLPIAGVSMVVVVVIAVIMAMMQIQEQTLTFLPKMASIVL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+II P++ ++++ + + +I S L
Sbjct: 61 VIIILGPWMFQELTTLILDLFDKIPSLL 88
>gi|315453523|ref|YP_004073793.1| flagellar biosynthetic protein [Helicobacter felis ATCC 49179]
gi|315132575|emb|CBY83203.1| flagellar biosynthetic protein [Helicobacter felis ATCC 49179]
Length = 88
Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 51/86 (59%)
Query: 3 EADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITL 62
EA ++++A L S PVL + +G+L++ QA TQI E+TL+FVPKI+AV +
Sbjct: 2 EAQLMKLAIETYKITLMISLPVLLVGLVVGLLVSIFQATTQINEMTLSFVPKILAVIAVI 61
Query: 63 IISAPFIGGQISSFVTLVLSRIQSSL 88
+I+ P++ + + +++ I +
Sbjct: 62 VITMPWMLNMLLDYTSMLFKLIPKLV 87
>gi|308050043|ref|YP_003913609.1| export protein FliQ family 3 [Ferrimonas balearica DSM 9799]
gi|307632233|gb|ADN76535.1| export protein FliQ family 3 [Ferrimonas balearica DSM 9799]
Length = 89
Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/85 (21%), Positives = 45/85 (52%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ + I ++ +++ ++ M +G++IA LQA TQ+ E TL+F+P+++ +
Sbjct: 1 MDAQQLTAIFADGIYLVVAMVGVLIMPGMVVGLVIAVLQAATQVNEQTLSFLPRLLITLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
++ + ++ Q++ + I
Sbjct: 61 MVLFAGNWLLQQLADLFNRLFLDIP 85
>gi|170690581|ref|ZP_02881748.1| type III secretion protein, HrpO family [Burkholderia graminis
C4D1M]
gi|170145016|gb|EDT13177.1| type III secretion protein, HrpO family [Burkholderia graminis
C4D1M]
Length = 87
Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 45/81 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ ++ M + S P++ A +G+ ++FLQA+T +Q+ TL+ K+IAV +
Sbjct: 1 MDIDTLVRFTTQGMLLCMYISLPIVIVAALVGLGVSFLQAITSMQDQTLSHGVKLIAVTV 60
Query: 61 TLIISAPFIGGQISSFVTLVL 81
++I+APF + F ++
Sbjct: 61 AIVIAAPFSAAALLHFANEIM 81
>gi|21242686|ref|NP_642268.1| flagellar biosynthesis [Xanthomonas axonopodis pv. citri str.
306]
gi|58582235|ref|YP_201251.1| flagellar biosynthesis [Xanthomonas oryzae pv. oryzae KACC10331]
gi|78047543|ref|YP_363718.1| flagellar biosynthesis pathway component FliQ [Xanthomonas
campestris pv. vesicatoria str. 85-10]
gi|84624128|ref|YP_451500.1| flagellar biosynthesis [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|166712021|ref|ZP_02243228.1| flagellar biosynthesis [Xanthomonas oryzae pv. oryzicola BLS256]
gi|188576796|ref|YP_001913725.1| flagellar biosynthesis pathway component FliQ [Xanthomonas oryzae
pv. oryzae PXO99A]
gi|188576988|ref|YP_001913917.1| flagellar biosynthesis pathway component FliQ [Xanthomonas oryzae
pv. oryzae PXO99A]
gi|289666112|ref|ZP_06487693.1| flagellar biosynthesis [Xanthomonas campestris pv. vasculorum
NCPPB702]
gi|289670560|ref|ZP_06491635.1| flagellar biosynthesis [Xanthomonas campestris pv. musacearum
NCPPB4381]
gi|325920563|ref|ZP_08182485.1| flagellar biosynthesis pathway, component FliQ [Xanthomonas
gardneri ATCC 19865]
gi|325925988|ref|ZP_08187354.1| flagellar biosynthesis pathway, component FliQ [Xanthomonas
perforans 91-118]
gi|21108159|gb|AAM36804.1| flagellar biosynthesis [Xanthomonas axonopodis pv. citri str.
306]
gi|58426829|gb|AAW75866.1| flagellar biosynthesis [Xanthomonas oryzae pv. oryzae KACC10331]
gi|78035973|emb|CAJ23664.1| flagellar biosynthesis pathway component FliQ [Xanthomonas
campestris pv. vesicatoria str. 85-10]
gi|84368068|dbj|BAE69226.1| flagellar biosynthesis [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|188521248|gb|ACD59193.1| flagellar biosynthesis pathway component FliQ [Xanthomonas oryzae
pv. oryzae PXO99A]
gi|188521440|gb|ACD59385.1| flagellar biosynthesis pathway component FliQ [Xanthomonas oryzae
pv. oryzae PXO99A]
gi|325543584|gb|EGD15001.1| flagellar biosynthesis pathway, component FliQ [Xanthomonas
perforans 91-118]
gi|325548956|gb|EGD19888.1| flagellar biosynthesis pathway, component FliQ [Xanthomonas
gardneri ATCC 19865]
Length = 89
Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 45/88 (51%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ L R + T+L + P+L + + +G++I +QA TQ+ E T+ FV K +A+
Sbjct: 1 MSPEIALTELRGGLVTVLWIAGPMLLAVLVVGVVIGVVQAATQLNEPTIAFVAKAVALTA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
TL + + G + F + RI +
Sbjct: 61 TLFATGSMLLGHLVEFTIALFQRIPHLI 88
>gi|254491665|ref|ZP_05104844.1| Bacterial export protein, family 3 [Methylophaga thiooxidans
DMS010]
gi|224463143|gb|EEF79413.1| Bacterial export protein, family 3 [Methylophaga thiooxydans
DMS010]
Length = 80
Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 39/76 (51%)
Query: 10 ARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
+ + I A +L A+ +G++++ QA T I E TLTF+PK+ + LI + P++
Sbjct: 1 MQQTLQVISLLIAMILLPALGIGLIVSMFQAATSINEQTLTFIPKLFITILVLIFAGPWM 60
Query: 70 GGQISSFVTLVLSRIQ 85
+ SF + I
Sbjct: 61 LSMLLSFTQRLFEDIP 76
>gi|296534148|ref|ZP_06896644.1| flagellar biosynthetic protein FliQ [Roseomonas cervicalis ATCC
49957]
gi|296265524|gb|EFH11653.1| flagellar biosynthetic protein FliQ [Roseomonas cervicalis ATCC
49957]
Length = 92
Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 1 MNEADVLEIA-RAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVF 59
M E+DV+ +A + A+WT L P+L + +G++IA LQALTQ+QE L FVPK++A+
Sbjct: 1 MVESDVIALAGQQALWTALLVGGPLLGILLAVGLVIAILQALTQVQEAALAFVPKLLALG 60
Query: 60 ITLIISAPFIGGQISSFVTLVLSRI 84
+ L+ + + S + ++
Sbjct: 61 LALLFGSSAALTALRSLTEGLFDQV 85
>gi|183600581|ref|ZP_02962074.1| hypothetical protein PROSTU_04167 [Providencia stuartii ATCC
25827]
gi|188019858|gb|EDU57898.1| hypothetical protein PROSTU_04167 [Providencia stuartii ATCC
25827]
Length = 90
Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 47/79 (59%)
Query: 4 ADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLI 63
+++ + AM I+ SA + A +G+L+ +Q +TQ+QE TL F K++AVF +L
Sbjct: 2 DEIIYSSNKAMLLIVMLSAIPVIVATVVGLLVGLIQTVTQLQEQTLPFGIKLLAVFGSLF 61
Query: 64 ISAPFIGGQISSFVTLVLS 82
+ + ++ ++ ++ VL+
Sbjct: 62 MISGWLADKVMNYALEVLT 80
>gi|170694403|ref|ZP_02885557.1| flagellar biosynthetic protein FliQ [Burkholderia graminis C4D1M]
gi|170140826|gb|EDT09000.1| flagellar biosynthetic protein FliQ [Burkholderia graminis C4D1M]
Length = 83
Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 54/82 (65%)
Query: 7 LEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISA 66
+ +A AM+ L +AP+L A+ +G++++ QA TQI E TL+F+PK++A+ +T++I+
Sbjct: 1 MTLAHQAMYVGLLLAAPLLLVALVVGLVVSLFQAATQINESTLSFIPKLLAIAVTMVIAG 60
Query: 67 PFIGGQISSFVTLVLSRIQSSL 88
P++ + ++ L+ I + +
Sbjct: 61 PWMLTTMLDYLRQTLTNIPTLV 82
>gi|307725661|ref|YP_003908874.1| type III secretion protein, HrpO family [Burkholderia sp.
CCGE1003]
gi|323530326|ref|YP_004232478.1| type III secretion protein, HrpO family [Burkholderia sp.
CCGE1001]
gi|307586186|gb|ADN59583.1| type III secretion protein, HrpO family [Burkholderia sp.
CCGE1003]
gi|323387328|gb|ADX59418.1| type III secretion protein, HrpO family [Burkholderia sp.
CCGE1001]
Length = 87
Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 45/81 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ ++ M + S P++ A +G+ ++FLQA+T +Q+ TL+ K+IAV I
Sbjct: 1 MDIDTLVRFTTQGMLLCMYISLPIVIVAALVGLGVSFLQAITSMQDQTLSHGVKLIAVTI 60
Query: 61 TLIISAPFIGGQISSFVTLVL 81
++I+APF + F ++
Sbjct: 61 AIVIAAPFSAAALLHFANEIM 81
>gi|282599888|ref|ZP_05972234.2| surface presentation of antigens protein SpaQ [Providencia
rustigianii DSM 4541]
gi|282567504|gb|EFB73039.1| surface presentation of antigens protein SpaQ [Providencia
rustigianii DSM 4541]
Length = 91
Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 46/79 (58%)
Query: 4 ADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLI 63
++ ++ AM I+ SA + A +G+L+ LQ +TQ+QE TL F K++AVF L
Sbjct: 3 DSIVYVSNKAMLLIVILSAIPVIVATVVGLLVGLLQTVTQLQEQTLPFGIKLLAVFGCLF 62
Query: 64 ISAPFIGGQISSFVTLVLS 82
+ + ++ ++ ++ V++
Sbjct: 63 MISGWLADKVMNYALEVMT 81
>gi|268592374|ref|ZP_06126595.1| surface presentation of antigens protein SpaQ [Providencia
rettgeri DSM 1131]
gi|291312160|gb|EFE52613.1| surface presentation of antigens protein SpaQ [Providencia
rettgeri DSM 1131]
Length = 90
Score = 48.3 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 45/79 (56%)
Query: 4 ADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLI 63
++ ++ M I+ SA + A +G+L+ LQ +TQ+QE TL F K++AVF +L
Sbjct: 2 DQIVYLSNKTMLLIVILSAIPVIVATAVGLLVGLLQTVTQLQEQTLPFGIKLLAVFGSLF 61
Query: 64 ISAPFIGGQISSFVTLVLS 82
+ + ++ ++ +F LS
Sbjct: 62 MISGWLSDKVMNFALETLS 80
>gi|284007397|emb|CBA72805.1| type III secretion apparatus protein SpaQ [Arsenophonus nasoniae]
Length = 84
Score = 48.3 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 41/78 (52%)
Query: 4 ADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLI 63
++++ + A++ IL S + A +G+L+ Q +TQ+QE TL F K+I V L
Sbjct: 2 SNIIFASNKALYLILIFSLLPVIVATIIGLLVGLFQTVTQLQEQTLPFGLKLIGVMGCLY 61
Query: 64 ISAPFIGGQISSFVTLVL 81
+ + + + S+ V+
Sbjct: 62 LLSGWYSEVLLSYAHEVI 79
>gi|85058548|ref|YP_454250.1| type III secretion apparatus SpaQ [Sodalis glossinidius str.
'morsitans']
gi|45504756|gb|AAS66847.1| YsaS [Sodalis glossinidius]
gi|84779068|dbj|BAE73845.1| type III secretion apparatus SpaQ [Sodalis glossinidius str.
'morsitans']
Length = 84
Score = 48.3 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 40/78 (51%)
Query: 4 ADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLI 63
+++ I +A+ +L SA + A +G+++ Q + QIQE TL F K++AVF L+
Sbjct: 2 SEISYIGNSALLLVLKLSAVPIAMATIVGLVVGLFQTVMQIQEQTLPFGLKMLAVFACLL 61
Query: 64 ISAPFIGGQISSFVTLVL 81
+ + + F T
Sbjct: 62 MLMGWFASEGLRFATESF 79
>gi|212711700|ref|ZP_03319828.1| hypothetical protein PROVALCAL_02775 [Providencia alcalifaciens
DSM 30120]
gi|212685802|gb|EEB45330.1| hypothetical protein PROVALCAL_02775 [Providencia alcalifaciens
DSM 30120]
Length = 90
Score = 48.3 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 47/79 (59%)
Query: 4 ADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLI 63
++ ++ AM I+ SA + A +G+L+ LQ +TQ+QE TL F K++AVF +L
Sbjct: 2 DAIIYVSNKAMLLIVILSAIPVIVATVVGVLVGLLQTVTQLQEQTLPFGIKLLAVFGSLF 61
Query: 64 ISAPFIGGQISSFVTLVLS 82
+ + ++ ++ ++ V++
Sbjct: 62 MISGWLADKVMNYTLEVMT 80
>gi|289804461|ref|ZP_06535090.1| EpaQ [Salmonella enterica subsp. enterica serovar Typhi str. AG3]
Length = 71
Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 33/64 (51%)
Query: 18 LSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFV 77
+ S A +G+L+ Q +TQ+QE TL F K++ V + L + + + G + S+
Sbjct: 1 MILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFLLSGWYGEVLLSYG 60
Query: 78 TLVL 81
V+
Sbjct: 61 RQVI 64
>gi|261885291|ref|ZP_06009330.1| flagellar biosynthesis protein FliQ [Campylobacter fetus subsp.
venerealis str. Azul-94]
Length = 72
Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 44/71 (61%)
Query: 18 LSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFV 77
+ S P+L + + G++I+ QA TQI E+TL+FVPKII V + +I P++ Q+ F
Sbjct: 1 MLISLPMLLAGLIAGLIISIFQATTQINEMTLSFVPKIILVVVIIIFLMPWMMNQMIEFT 60
Query: 78 TLVLSRIQSSL 88
+L+ I + +
Sbjct: 61 ARILNMIPTFI 71
>gi|207091751|ref|ZP_03239538.1| flagellar biosynthesis protein FliQ [Helicobacter pylori
HPKX_438_AG0C1]
Length = 83
Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 47/79 (59%)
Query: 7 LEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISA 66
+++A L S PVL + + +G+L++ QA TQI E+TL+FVPKI+AV LI++
Sbjct: 1 MKLAIETYKITLMISLPVLLAGLVVGLLVSIFQATTQINEMTLSFVPKILAVIGVLILTM 60
Query: 67 PFIGGQISSFVTLVLSRIQ 85
P++ + + ++ I
Sbjct: 61 PWMTNMLLDYTQTLIKLIP 79
>gi|30019812|ref|NP_831443.1| flagellar biosynthesis protein FliQ [Bacillus cereus ATCC 14579]
gi|30261771|ref|NP_844148.1| flagellar biosynthesis protein FliQ [Bacillus anthracis str.
Ames]
gi|42780860|ref|NP_978107.1| flagellar biosynthesis protein FliQ [Bacillus cereus ATCC 10987]
gi|47527004|ref|YP_018353.1| flagellar biosynthesis protein FliQ [Bacillus anthracis str.
'Ames Ancestor']
gi|47565436|ref|ZP_00236477.1| flagellar biosynthesis protein fliQ [Bacillus cereus G9241]
gi|49184605|ref|YP_027857.1| flagellar biosynthesis protein FliQ [Bacillus anthracis str.
Sterne]
gi|49480932|ref|YP_035886.1| flagellar biosynthesis protein FliQ [Bacillus thuringiensis
serovar konkukian str. 97-27]
gi|52143692|ref|YP_083137.1| flagellar biosynthesis protein FliQ [Bacillus cereus E33L]
gi|65319048|ref|ZP_00392007.1| COG1987: Flagellar biosynthesis pathway, component FliQ [Bacillus
anthracis str. A2012]
gi|165869481|ref|ZP_02214140.1| putative flagellar biosynthetic protein FliQ [Bacillus anthracis
str. A0488]
gi|167633372|ref|ZP_02391697.1| putative flagellar biosynthetic protein FliQ [Bacillus anthracis
str. A0442]
gi|167638857|ref|ZP_02397132.1| putative flagellar biosynthetic protein FliQ [Bacillus anthracis
str. A0193]
gi|170686268|ref|ZP_02877490.1| putative flagellar biosynthetic protein FliQ [Bacillus anthracis
str. A0465]
gi|170706525|ref|ZP_02896985.1| putative flagellar biosynthetic protein FliQ [Bacillus anthracis
str. A0389]
gi|177650459|ref|ZP_02933426.1| putative flagellar biosynthetic protein FliQ [Bacillus anthracis
str. A0174]
gi|190566401|ref|ZP_03019319.1| putative flagellar biosynthetic protein FliQ [Bacillus anthracis
Tsiankovskii-I]
gi|196033596|ref|ZP_03101008.1| putative flagellar biosynthetic protein FliQ [Bacillus cereus W]
gi|196038928|ref|ZP_03106235.1| putative flagellar biosynthetic protein FliQ [Bacillus cereus
NVH0597-99]
gi|196045134|ref|ZP_03112367.1| putative flagellar biosynthetic protein FliQ [Bacillus cereus
03BB108]
gi|206970695|ref|ZP_03231647.1| putative flagellar biosynthetic protein FliQ [Bacillus cereus
AH1134]
gi|206975037|ref|ZP_03235952.1| putative flagellar biosynthetic protein FliQ [Bacillus cereus
H3081.97]
gi|217959250|ref|YP_002337798.1| flagellar biosynthesis protein FliQ [Bacillus cereus AH187]
gi|218902881|ref|YP_002450715.1| putative flagellar biosynthetic protein FliQ [Bacillus cereus
AH820]
gi|222095390|ref|YP_002529450.1| flagellar biosynthesis protein fliq [Bacillus cereus Q1]
gi|225863625|ref|YP_002749003.1| putative flagellar biosynthetic protein FliQ [Bacillus cereus
03BB102]
gi|227815460|ref|YP_002815469.1| putative flagellar biosynthetic protein FliQ [Bacillus anthracis
str. CDC 684]
gi|228914345|ref|ZP_04077960.1| Flagellar biosynthesis protein fliQ [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228920477|ref|ZP_04083822.1| Flagellar biosynthesis protein fliQ [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228926803|ref|ZP_04089871.1| Flagellar biosynthesis protein fliQ [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228933051|ref|ZP_04095914.1| Flagellar biosynthesis protein fliQ [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228945370|ref|ZP_04107725.1| Flagellar biosynthesis protein fliQ [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228984852|ref|ZP_04145022.1| Flagellar biosynthesis protein fliQ [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|229017053|ref|ZP_04173972.1| Flagellar biosynthesis protein fliQ [Bacillus cereus AH1273]
gi|229023234|ref|ZP_04179744.1| Flagellar biosynthesis protein fliQ [Bacillus cereus AH1272]
gi|229029447|ref|ZP_04185530.1| Flagellar biosynthesis protein fliQ [Bacillus cereus AH1271]
gi|229069318|ref|ZP_04202608.1| Flagellar biosynthesis protein fliQ [Bacillus cereus F65185]
gi|229078949|ref|ZP_04211501.1| Flagellar biosynthesis protein fliQ [Bacillus cereus Rock4-2]
gi|229090730|ref|ZP_04221963.1| Flagellar biosynthesis protein fliQ [Bacillus cereus Rock3-42]
gi|229096252|ref|ZP_04227225.1| Flagellar biosynthesis protein fliQ [Bacillus cereus Rock3-29]
gi|229102366|ref|ZP_04233074.1| Flagellar biosynthesis protein fliQ [Bacillus cereus Rock3-28]
gi|229115207|ref|ZP_04244617.1| Flagellar biosynthesis protein fliQ [Bacillus cereus Rock1-3]
gi|229121319|ref|ZP_04250550.1| Flagellar biosynthesis protein fliQ [Bacillus cereus 95/8201]
gi|229127094|ref|ZP_04256091.1| Flagellar biosynthesis protein fliQ [Bacillus cereus BDRD-Cer4]
gi|229138467|ref|ZP_04267056.1| Flagellar biosynthesis protein fliQ [Bacillus cereus BDRD-ST26]
gi|229144380|ref|ZP_04272785.1| Flagellar biosynthesis protein fliQ [Bacillus cereus BDRD-ST24]
gi|229155338|ref|ZP_04283448.1| Flagellar biosynthesis protein fliQ [Bacillus cereus ATCC 4342]
gi|229172413|ref|ZP_04299972.1| Flagellar biosynthesis protein fliQ [Bacillus cereus MM3]
gi|229183959|ref|ZP_04311174.1| Flagellar biosynthesis protein fliQ [Bacillus cereus BGSC 6E1]
gi|229189865|ref|ZP_04316875.1| Flagellar biosynthesis protein fliQ [Bacillus cereus ATCC 10876]
gi|229195979|ref|ZP_04322732.1| Flagellar biosynthesis protein fliQ [Bacillus cereus m1293]
gi|229601684|ref|YP_002866160.1| putative flagellar biosynthetic protein FliQ [Bacillus anthracis
str. A0248]
gi|254683269|ref|ZP_05147130.1| flagellar biosynthesis protein FliQ [Bacillus anthracis str.
CNEVA-9066]
gi|254723852|ref|ZP_05185638.1| flagellar biosynthesis protein FliQ [Bacillus anthracis str.
A1055]
gi|254734622|ref|ZP_05192334.1| flagellar biosynthesis protein FliQ [Bacillus anthracis str.
Western North America USA6153]
gi|254741031|ref|ZP_05198719.1| flagellar biosynthesis protein FliQ [Bacillus anthracis str.
Kruger B]
gi|254755274|ref|ZP_05207308.1| flagellar biosynthesis protein FliQ [Bacillus anthracis str.
Vollum]
gi|254759810|ref|ZP_05211834.1| flagellar biosynthesis protein FliQ [Bacillus anthracis str.
Australia 94]
gi|300117309|ref|ZP_07055099.1| flagellar biosynthesis protein FliQ [Bacillus cereus SJ1]
gi|301053305|ref|YP_003791516.1| flagellar biosynthesis protein [Bacillus anthracis CI]
gi|29895357|gb|AAP08644.1| Flagellar biosynthetic protein fliQ [Bacillus cereus ATCC 14579]
gi|30255999|gb|AAP25634.1| putative flagellar biosynthetic protein FliQ [Bacillus anthracis
str. Ames]
gi|42736780|gb|AAS40715.1| flagellar biosynthetic protein FliQ, putative [Bacillus cereus
ATCC 10987]
gi|47502152|gb|AAT30828.1| putative flagellar biosynthetic protein FliQ [Bacillus anthracis
str. 'Ames Ancestor']
gi|47557426|gb|EAL15753.1| flagellar biosynthesis protein fliQ [Bacillus cereus G9241]
gi|49178532|gb|AAT53908.1| flagellar biosynthetic protein FliQ, putative [Bacillus anthracis
str. Sterne]
gi|49332488|gb|AAT63134.1| flagellar biosynthetic protein FliQ [Bacillus thuringiensis
serovar konkukian str. 97-27]
gi|51977161|gb|AAU18711.1| flagellar biosynthetic protein Q [Bacillus cereus E33L]
gi|164714921|gb|EDR20439.1| putative flagellar biosynthetic protein FliQ [Bacillus anthracis
str. A0488]
gi|167513321|gb|EDR88692.1| putative flagellar biosynthetic protein FliQ [Bacillus anthracis
str. A0193]
gi|167531410|gb|EDR94088.1| putative flagellar biosynthetic protein FliQ [Bacillus anthracis
str. A0442]
gi|170128623|gb|EDS97490.1| putative flagellar biosynthetic protein FliQ [Bacillus anthracis
str. A0389]
gi|170669965|gb|EDT20706.1| putative flagellar biosynthetic protein FliQ [Bacillus anthracis
str. A0465]
gi|172083603|gb|EDT68663.1| putative flagellar biosynthetic protein FliQ [Bacillus anthracis
str. A0174]
gi|190562536|gb|EDV16503.1| putative flagellar biosynthetic protein FliQ [Bacillus anthracis
Tsiankovskii-I]
gi|195994030|gb|EDX57986.1| putative flagellar biosynthetic protein FliQ [Bacillus cereus W]
gi|196024136|gb|EDX62810.1| putative flagellar biosynthetic protein FliQ [Bacillus cereus
03BB108]
gi|196030073|gb|EDX68673.1| putative flagellar biosynthetic protein FliQ [Bacillus cereus
NVH0597-99]
gi|206734331|gb|EDZ51501.1| putative flagellar biosynthetic protein FliQ [Bacillus cereus
AH1134]
gi|206747056|gb|EDZ58448.1| putative flagellar biosynthetic protein FliQ [Bacillus cereus
H3081.97]
gi|217065165|gb|ACJ79415.1| putative flagellar biosynthetic protein FliQ [Bacillus cereus
AH187]
gi|218538980|gb|ACK91378.1| putative flagellar biosynthetic protein FliQ [Bacillus cereus
AH820]
gi|221239448|gb|ACM12158.1| flagellar biosynthetic protein FliQ [Bacillus cereus Q1]
gi|225789704|gb|ACO29921.1| putative flagellar biosynthetic protein FliQ [Bacillus cereus
03BB102]
gi|227004587|gb|ACP14330.1| putative flagellar biosynthetic protein FliQ [Bacillus anthracis
str. CDC 684]
gi|228587538|gb|EEK45603.1| Flagellar biosynthesis protein fliQ [Bacillus cereus m1293]
gi|228593539|gb|EEK51348.1| Flagellar biosynthesis protein fliQ [Bacillus cereus ATCC 10876]
gi|228599484|gb|EEK57089.1| Flagellar biosynthesis protein fliQ [Bacillus cereus BGSC 6E1]
gi|228610884|gb|EEK68147.1| Flagellar biosynthesis protein fliQ [Bacillus cereus MM3]
gi|228628053|gb|EEK84770.1| Flagellar biosynthesis protein fliQ [Bacillus cereus ATCC 4342]
gi|228639011|gb|EEK95436.1| Flagellar biosynthesis protein fliQ [Bacillus cereus BDRD-ST24]
gi|228645004|gb|EEL01247.1| Flagellar biosynthesis protein fliQ [Bacillus cereus BDRD-ST26]
gi|228656210|gb|EEL12051.1| Flagellar biosynthesis protein fliQ [Bacillus cereus BDRD-Cer4]
gi|228662164|gb|EEL17773.1| Flagellar biosynthesis protein fliQ [Bacillus cereus 95/8201]
gi|228668347|gb|EEL23779.1| Flagellar biosynthesis protein fliQ [Bacillus cereus Rock1-3]
gi|228681013|gb|EEL35182.1| Flagellar biosynthesis protein fliQ [Bacillus cereus Rock3-28]
gi|228687212|gb|EEL41117.1| Flagellar biosynthesis protein fliQ [Bacillus cereus Rock3-29]
gi|228692672|gb|EEL46398.1| Flagellar biosynthesis protein fliQ [Bacillus cereus Rock3-42]
gi|228704363|gb|EEL56797.1| Flagellar biosynthesis protein fliQ [Bacillus cereus Rock4-2]
gi|228713805|gb|EEL65690.1| Flagellar biosynthesis protein fliQ [Bacillus cereus F65185]
gi|228731906|gb|EEL82805.1| Flagellar biosynthesis protein fliQ [Bacillus cereus AH1271]
gi|228738028|gb|EEL88514.1| Flagellar biosynthesis protein fliQ [Bacillus cereus AH1272]
gi|228744226|gb|EEL94309.1| Flagellar biosynthesis protein fliQ [Bacillus cereus AH1273]
gi|228774802|gb|EEM23198.1| Flagellar biosynthesis protein fliQ [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|228814342|gb|EEM60608.1| Flagellar biosynthesis protein fliQ [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228826652|gb|EEM72423.1| Flagellar biosynthesis protein fliQ [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228832916|gb|EEM78485.1| Flagellar biosynthesis protein fliQ [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228839107|gb|EEM84403.1| Flagellar biosynthesis protein fliQ [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228845339|gb|EEM90375.1| Flagellar biosynthesis protein fliQ [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|229266092|gb|ACQ47729.1| putative flagellar biosynthetic protein FliQ [Bacillus anthracis
str. A0248]
gi|298725144|gb|EFI65796.1| flagellar biosynthesis protein FliQ [Bacillus cereus SJ1]
gi|300375474|gb|ADK04378.1| flagellar biosynthesis protein [Bacillus cereus biovar anthracis
str. CI]
gi|324325785|gb|ADY21045.1| flagellar biosynthesis protein FliQ [Bacillus thuringiensis
serovar finitimus YBT-020]
Length = 91
Score = 47.9 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 53/88 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN + +++I + + + PV +M + I+IA + A+ QIQE TLTF+PK+ ++ +
Sbjct: 1 MNTSPIIDIFQTFFYKGVMILMPVAGVSMIVVIIIAVIMAMMQIQEQTLTFLPKMASIVL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+II P++ ++++ + + +I S L
Sbjct: 61 VIIILGPWMFQELTTLILDLFDKIPSLL 88
>gi|238025696|ref|YP_002909927.1| flagellar biosynthesis protein FliQ [Burkholderia glumae BGR1]
gi|237874890|gb|ACR27223.1| Flagellar biosynthesis protein [Burkholderia glumae BGR1]
Length = 90
Score = 47.9 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 53/86 (61%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ +A AM L +AP+L A+ +G++++ QA TQI E TL+F+PK++A+ +
Sbjct: 1 MTPEAVMTLAHGAMMIGLMLAAPLLLVALVVGLVVSLFQAATQINESTLSFIPKLLAIVV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
T++I+ P++ + + +L + +
Sbjct: 61 TMVIAGPWMLTSMLDYTRTILMHVAT 86
>gi|238755992|ref|ZP_04617317.1| Surface presentation of antigens protein spaQ [Yersinia ruckeri
ATCC 29473]
gi|238705781|gb|EEP98173.1| Surface presentation of antigens protein spaQ [Yersinia ruckeri
ATCC 29473]
Length = 87
Score = 47.9 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 45/79 (56%)
Query: 4 ADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLI 63
++ + AM I+ SA + A +G+ + +Q +TQ+QE TL F K++AVF +L
Sbjct: 2 EQIIYASNKAMLLIVVLSAIPVLVATVVGLFVGLIQTVTQLQEQTLPFGLKLLAVFGSLF 61
Query: 64 ISAPFIGGQISSFVTLVLS 82
+ + ++ ++ S+ VLS
Sbjct: 62 MISGWLSDKVMSYAMEVLS 80
>gi|330819398|ref|YP_004348260.1| Type III secretion inner membrane protein SctS [Burkholderia
gladioli BSR3]
gi|327371393|gb|AEA62748.1| Type III secretion inner membrane protein SctS [Burkholderia
gladioli BSR3]
Length = 87
Score = 47.9 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 45/81 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ ++ M L+ S P + A +G+ ++F+QA+T +Q+ TL V K+IAV I
Sbjct: 1 MDVDSLIRFTTQGMLLCLTVSLPPVIVAAVVGLGVSFVQAITSLQDQTLPQVIKLIAVTI 60
Query: 61 TLIISAPFIGGQISSFVTLVL 81
T+I++AP + F ++
Sbjct: 61 TIIVAAPVCCAAVLHFANQMM 81
>gi|167567943|ref|ZP_02360859.1| type III secretion-associated protein [Burkholderia oklahomensis
EO147]
gi|167573183|ref|ZP_02366057.1| type III secretion-associated protein [Burkholderia oklahomensis
C6786]
Length = 87
Score = 47.9 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 46/82 (56%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ ++ + M L+ S P + A +G+ ++F+QA+T +Q+ TL V K+IAV I
Sbjct: 1 MDIDSLIRFSTQGMLLCLTVSLPPVIVAALVGLGVSFVQAITSLQDQTLPQVAKLIAVTI 60
Query: 61 TLIISAPFIGGQISSFVTLVLS 82
T+I++AP I F ++
Sbjct: 61 TIIVAAPTGCAAILHFANQMMQ 82
>gi|307138616|ref|ZP_07497972.1| flagellar biosynthesis protein FliQ [Escherichia coli H736]
gi|323168930|gb|EFZ54610.1| flagellar biosynthetic protein FliQ [Shigella sonnei 53G]
gi|323183933|gb|EFZ69320.1| flagellar biosynthetic protein FliQ [Escherichia coli 1357]
gi|332095493|gb|EGJ00509.1| flagellar biosynthetic protein FliQ [Shigella dysenteriae 155-74]
Length = 83
Score = 47.9 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 31/79 (39%), Positives = 52/79 (65%)
Query: 7 LEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISA 66
+ + AM L+ +AP+L A+ G++I+ LQA TQI E+TL+F+PKIIAVFI +II+
Sbjct: 1 MMMGTEAMKVALALAAPLLLVALVTGLIISILQAATQINEMTLSFIPKIIAVFIAIIIAG 60
Query: 67 PFIGGQISSFVTLVLSRIQ 85
P++ + +V + + +
Sbjct: 61 PWMLNLLLDYVRTLFTNLP 79
>gi|170698144|ref|ZP_02889223.1| type III secretion protein, HrpO family [Burkholderia ambifaria
IOP40-10]
gi|170136909|gb|EDT05158.1| type III secretion protein, HrpO family [Burkholderia ambifaria
IOP40-10]
Length = 84
Score = 47.9 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 43/74 (58%)
Query: 9 IARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPF 68
I+ A+ ++ A + A +G+ + QA+TQIQE TL F K++AVF L++ + +
Sbjct: 7 ISDKAIVLVIVLCAAPVVVATVVGLAVGLFQAVTQIQEQTLPFGIKLLAVFGVLLLLSNW 66
Query: 69 IGGQISSFVTLVLS 82
IG ++ +F ++
Sbjct: 67 IGEKLLAFAIEAVT 80
>gi|227820526|ref|YP_002824497.1| type III secretion component, RhcS [Sinorhizobium fredii NGR234]
gi|227339525|gb|ACP23744.1| type III secretion component, RhcS [Sinorhizobium fredii NGR234]
Length = 89
Score = 47.5 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 51/86 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M++ L + AM T+L +SAP L A+ +G+ + +QALTQIQ+ TL K++AV +
Sbjct: 1 MDQTAFLAQMQKAMLTVLIASAPALAIAIVIGVSVGLIQALTQIQDQTLPQAVKLVAVML 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
L++ P + Q+++F + L +
Sbjct: 61 ALVVLGPALAMQVANFASNTLDIFPA 86
>gi|330903476|gb|EGH34048.1| type III secretion protein HrcS [Pseudomonas syringae pv.
japonica str. M301072PT]
Length = 73
Score = 47.5 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 41/69 (59%)
Query: 19 SSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVT 78
+AP L A+ +G++ + LQAL QIQ+ TL F K+ AV +TL ++ +IG ++ F+
Sbjct: 1 ILTAPPLAVAVLVGVVTSLLQALMQIQDQTLPFGIKLGAVGLTLAMTGRWIGVELIQFIN 60
Query: 79 LVLSRIQSS 87
+ I S
Sbjct: 61 MAFDLIARS 69
>gi|283784009|ref|YP_003363874.1| lateral flagellar export/assembly protein [Citrobacter rodentium
ICC168]
gi|282947463|emb|CBG87010.1| lateral flagellar export/assembly protein [Citrobacter rodentium
ICC168]
Length = 90
Score = 47.5 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 16/88 (18%), Positives = 46/88 (52%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
+ +I + + ++ + ++ ++ +G+L++ QA+TQI E TL+F+P++I +
Sbjct: 2 LTIDVAADIVASGIKVVIILVSLLVVPSLLVGLLVSIFQAVTQINEQTLSFLPRLIVTLV 61
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L + ++ Q+ + ++ + +
Sbjct: 62 VLGVCGKWMIVQLDDLCIHLFTQAATLV 89
>gi|213025315|ref|ZP_03339762.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Typhi str. 404ty]
Length = 57
Score = 47.5 bits (112), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 40/53 (75%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSRI 84
G++++ +QALTQIQ+ TL F+ K++A+ ITL++S P++ G + ++ ++ RI
Sbjct: 1 GVIVSLVQALTQIQDQTLQFMIKLLAIAITLMVSYPWLSGILLNYTRQIMLRI 53
>gi|283834477|ref|ZP_06354218.1| flagellar biosynthetic protein FliQ [Citrobacter youngae ATCC
29220]
gi|291070024|gb|EFE08133.1| flagellar biosynthetic protein FliQ [Citrobacter youngae ATCC
29220]
Length = 90
Score = 47.2 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 18/83 (21%), Positives = 43/83 (51%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
+ +I + + ++ ++ ++ +G+L++ QA+TQI E TL+F+P++I
Sbjct: 2 LTIDVAADIVASGIKVVIILVCVLVVPSLLVGMLVSIFQAVTQINEQTLSFLPRLIVTLA 61
Query: 61 TLIISAPFIGGQISSFVTLVLSR 83
L I ++ Q+S + ++
Sbjct: 62 VLGICGKWMIVQLSDLCVHLFTQ 84
>gi|167566197|ref|ZP_02359113.1| type III secretion protein, HrpO family [Burkholderia
oklahomensis EO147]
gi|167573307|ref|ZP_02366181.1| type III secretion protein, HrpO family [Burkholderia
oklahomensis C6786]
Length = 84
Score = 47.2 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 45/79 (56%)
Query: 4 ADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLI 63
A++ A+ ++ A + A +G+ I Q +TQ+QE TL F K++AVF L+
Sbjct: 2 AELTYAGNKAILLVILLCAAPVAVATVVGLAIGLFQTVTQLQEQTLPFGLKMLAVFGCLM 61
Query: 64 ISAPFIGGQISSFVTLVLS 82
+ + + GG++ +F T +LS
Sbjct: 62 MLSGWFGGKLLAFATEMLS 80
>gi|99082802|ref|YP_614956.1| export protein FliQ [Ruegeria sp. TM1040]
gi|99039082|gb|ABF65694.1| Flagellar biosynthetic protein fliQ [Ruegeria sp. TM1040]
Length = 92
Score = 47.2 bits (111), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 43/78 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
+ E + R + ++ S P+L +A+ +G+ + QALT IQE++LTFVPK+ + +
Sbjct: 2 LTEGIFYDTLRQGILAAITMSLPILIAALVIGLTVGLFQALTSIQEMSLTFVPKLAGILV 61
Query: 61 TLIISAPFIGGQISSFVT 78
++ + + +F T
Sbjct: 62 VFWLTMATMTQTLVAFFT 79
>gi|115360605|ref|YP_777742.1| HrpO family type III secretion protein [Burkholderia ambifaria
AMMD]
gi|115285933|gb|ABI91408.1| type III secretion protein, HrpO family [Burkholderia ambifaria
AMMD]
Length = 87
Score = 47.2 bits (111), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 45/82 (54%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M ++ I + LS S PV+ A G+ I+F+QA+T +Q+ ++++ K++AV
Sbjct: 1 METDTLVRITSQGLLLCLSVSMPVVAVAALSGLAISFVQAITSMQDQSISYAVKLVAVVA 60
Query: 61 TLIISAPFIGGQISSFVTLVLS 82
T++I+ + I F +++
Sbjct: 61 TVLITGAWGAAAILRFANQIIT 82
>gi|53716463|ref|YP_106125.1| type III secretion system protein BsaX [Burkholderia mallei ATCC
23344]
gi|53722557|ref|YP_111542.1| surface presentation of antigens protein [Burkholderia
pseudomallei K96243]
gi|67641436|ref|ZP_00440215.1| EpaQ [Burkholderia mallei GB8 horse 4]
gi|76817353|ref|YP_335735.1| type III secretion system protein BsaX [Burkholderia pseudomallei
1710b]
gi|83716660|ref|YP_439034.1| type III secretion system protein BsaX [Burkholderia
thailandensis E264]
gi|124382058|ref|YP_001025865.1| type III secretion system protein BsaX [Burkholderia mallei NCTC
10229]
gi|126445290|ref|YP_001063160.1| HrpO family type III secretion protein [Burkholderia pseudomallei
668]
gi|126446907|ref|YP_001077950.1| type III secretion system protein BsaX [Burkholderia mallei NCTC
10247]
gi|126457838|ref|YP_001076111.1| HrpO family type III secretion protein [Burkholderia pseudomallei
1106a]
gi|134282032|ref|ZP_01768738.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 305]
gi|167004215|ref|ZP_02269982.1| type III secretion system protein BsaX [Burkholderia mallei
PRL-20]
gi|167577440|ref|ZP_02370314.1| type III secretion protein, HrpO family [Burkholderia
thailandensis TXDOH]
gi|167615591|ref|ZP_02384226.1| type III secretion protein, HrpO family [Burkholderia
thailandensis Bt4]
gi|167724225|ref|ZP_02407461.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei DM98]
gi|167743200|ref|ZP_02415974.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 14]
gi|167820374|ref|ZP_02452054.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 91]
gi|167828746|ref|ZP_02460217.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 9]
gi|167840167|ref|ZP_02466851.1| type III secretion protein, HrpO family [Burkholderia
thailandensis MSMB43]
gi|167850201|ref|ZP_02475709.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei B7210]
gi|167898808|ref|ZP_02486209.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 7894]
gi|167907136|ref|ZP_02494341.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei NCTC 13177]
gi|167915490|ref|ZP_02502581.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 112]
gi|167923335|ref|ZP_02510426.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei BCC215]
gi|217425115|ref|ZP_03456610.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 576]
gi|226196058|ref|ZP_03791644.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei Pakistan 9]
gi|237507342|ref|ZP_04520057.1| EpaQ [Burkholderia pseudomallei MSHR346]
gi|242313286|ref|ZP_04812303.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 1106b]
gi|254175967|ref|ZP_04882625.1| type III secretion system protein BsaX [Burkholderia mallei ATCC
10399]
gi|254185168|ref|ZP_04891757.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 1655]
gi|254186855|ref|ZP_04893371.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei Pasteur 52237]
gi|254193621|ref|ZP_04900053.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei S13]
gi|254262650|ref|ZP_04953515.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 1710a]
gi|254301457|ref|ZP_04968901.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 406e]
gi|254359074|ref|ZP_04975346.1| type III secretion system protein BsaX [Burkholderia mallei
2002721280]
gi|257142142|ref|ZP_05590404.1| HrpO family type III secretion protein [Burkholderia
thailandensis E264]
gi|52212971|emb|CAH39009.1| surface presentation of antigens protein [Burkholderia
pseudomallei K96243]
gi|52422433|gb|AAU46003.1| type III secretion system protein BsaX [Burkholderia mallei ATCC
23344]
gi|76581826|gb|ABA51300.1| type III secretion system protein BsaX [Burkholderia pseudomallei
1710b]
gi|83650485|gb|ABC34549.1| type III secretion system protein BsaX [Burkholderia
thailandensis E264]
gi|126224781|gb|ABN88286.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 668]
gi|126231606|gb|ABN95019.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 1106a]
gi|126239761|gb|ABO02873.1| type III secretion system protein BsaX [Burkholderia mallei NCTC
10247]
gi|134246561|gb|EBA46649.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 305]
gi|148028261|gb|EDK86221.1| type III secretion system protein BsaX [Burkholderia mallei
2002721280]
gi|157811254|gb|EDO88424.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 406e]
gi|157934539|gb|EDO90209.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei Pasteur 52237]
gi|160697009|gb|EDP86979.1| type III secretion system protein BsaX [Burkholderia mallei ATCC
10399]
gi|169650372|gb|EDS83065.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei S13]
gi|184215760|gb|EDU12741.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 1655]
gi|217391720|gb|EEC31747.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 576]
gi|225931951|gb|EEH27952.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei Pakistan 9]
gi|234999547|gb|EEP48971.1| EpaQ [Burkholderia pseudomallei MSHR346]
gi|238522376|gb|EEP85821.1| EpaQ [Burkholderia mallei GB8 horse 4]
gi|242136525|gb|EES22928.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 1106b]
gi|243060410|gb|EES42596.1| type III secretion system protein BsaX [Burkholderia mallei
PRL-20]
gi|254213652|gb|EET03037.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 1710a]
gi|261826624|gb|ABM99203.2| type III secretion system protein BsaX [Burkholderia mallei NCTC
10229]
Length = 84
Score = 47.2 bits (111), Expect = 8e-04, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 45/79 (56%)
Query: 4 ADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLI 63
A++ A+ ++ A + A +G+ I Q +TQ+QE TL F K++AVF L+
Sbjct: 2 AELTYAGDKAILLVILLCAAPVAVATVVGLAIGLFQTVTQLQEQTLPFGLKMLAVFGCLM 61
Query: 64 ISAPFIGGQISSFVTLVLS 82
+ + + GG++ +F T +LS
Sbjct: 62 MLSGWFGGKLLAFATEMLS 80
>gi|91791410|ref|YP_561061.1| export protein FliQ [Shewanella denitrificans OS217]
gi|91713412|gb|ABE53338.1| export protein FliQ, family 3 [Shewanella denitrificans OS217]
Length = 82
Score = 47.2 bits (111), Expect = 9e-04, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 47/80 (58%)
Query: 6 VLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIIS 65
+L W + P+L +A+ +G+LI+ Q +TQIQE+TLTFVPK+I V I + +
Sbjct: 1 MLGYLSEFFWVTSKLAMPILATALVVGLLISIFQVVTQIQEMTLTFVPKLIVVLIVVGML 60
Query: 66 APFIGGQISSFVTLVLSRIQ 85
+ ++ I ++ +S+I
Sbjct: 61 SGWLLETIQTYAITTISKIA 80
>gi|296282255|ref|ZP_06860253.1| hypothetical protein CbatJ_01475 [Citromicrobium bathyomarinum
JL354]
Length = 90
Score = 47.2 bits (111), Expect = 9e-04, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 46/83 (55%)
Query: 4 ADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLI 63
+ +L +A +WT +AP+L +A+ LG++I +QA T + E TLTFVPK+ AV L+
Sbjct: 5 SVLLSLADRMLWTTALVAAPILLAALGLGLVIGLIQAATSVNEQTLTFVPKLAAVAFVLV 64
Query: 64 ISAPFIGGQISSFVTLVLSRIQS 86
+ + ++ F + I
Sbjct: 65 VLGASMMALVTDFTQDIFVEIAR 87
>gi|188534809|ref|YP_001908606.1| Type III secretion apparatus [Erwinia tasmaniensis Et1/99]
gi|188029851|emb|CAO97732.1| Type III secretion apparatus [Erwinia tasmaniensis Et1/99]
Length = 84
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 44/78 (56%)
Query: 4 ADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLI 63
+++L I +A+ +L +A + A +GI++ Q + QIQE TL F K++AVF ++
Sbjct: 2 SNILFIGNSALILVLKLTAVPIACATIVGIIVGLFQTVMQIQEQTLPFGLKMLAVFASIF 61
Query: 64 ISAPFIGGQISSFVTLVL 81
I + ++ +F T V
Sbjct: 62 ILIEWFSAEMMNFATHVF 79
>gi|259417808|ref|ZP_05741727.1| flagellar biosynthetic protein FliQ [Silicibacter sp. TrichCH4B]
gi|259346714|gb|EEW58528.1| flagellar biosynthetic protein FliQ [Silicibacter sp. TrichCH4B]
Length = 92
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 43/78 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
+ E + R + ++ S P+L +A+ +G+ + QALT IQE++LTFVPK+ + +
Sbjct: 2 LTEGIFYDTLRQGILAAITMSLPILITALVIGLTVGLFQALTSIQEMSLTFVPKLTGILV 61
Query: 61 TLIISAPFIGGQISSFVT 78
++ + + +F T
Sbjct: 62 VFWLTMATMTQTLVAFFT 79
>gi|119953073|ref|YP_945282.1| flagellar biosynthetic protein FliQ [Borrelia turicatae 91E135]
gi|119861844|gb|AAX17612.1| flagellar biosynthetic protein FliQ [Borrelia turicatae 91E135]
Length = 87
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 33/86 (38%), Positives = 58/86 (67%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M ++ + R ++ I+ SAP+L +A+ +G+LI+ QA+T IQ+ TL+F+PKII + +
Sbjct: 1 MTTGQIIYLIRISIENIIILSAPMLITALIVGLLISIFQAVTSIQDQTLSFIPKIIIILL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
TL+I P+I ++ F +V S+IQ+
Sbjct: 61 TLVIFGPWILKKLMLFAFMVFSQIQN 86
>gi|304321147|ref|YP_003854790.1| flagellar biosynthetic protein FliQ [Parvularcula bermudensis
HTCC2503]
gi|303300049|gb|ADM09648.1| flagellar biosynthetic protein FliQ [Parvularcula bermudensis
HTCC2503]
Length = 87
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 49/78 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
+ +A ++++ R A+ T SAP+L +A+ G+++ LQALT +QE+TLTFVPK+ A+ +
Sbjct: 2 LTDAQIIDLTREAVMTAALMSAPLLIAALVAGLIVGLLQALTSVQELTLTFVPKVAAMLL 61
Query: 61 TLIISAPFIGGQISSFVT 78
+++ F+ G
Sbjct: 62 VFALTSSFMVGLCLRLFE 79
>gi|307131231|ref|YP_003883247.1| type III secretion inner membrane protein [Dickeya dadantii 3937]
gi|306528760|gb|ADM98690.1| type III secretion inner membrane protein [Dickeya dadantii 3937]
Length = 86
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 49/81 (60%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
+ L + R AM ++ SAP L A+ +G+LI+ LQA+ Q+Q+ TL F K++AV + L +
Sbjct: 2 ETLNLFRQAMVLVVMLSAPPLLVAVVVGVLISLLQAVMQLQDQTLPFAVKLVAVGLVLAM 61
Query: 65 SAPFIGGQISSFVTLVLSRIQ 85
+ +IG ++ L + I+
Sbjct: 62 TGRWIGVELIQLAMLAFNMIE 82
>gi|170698361|ref|ZP_02889435.1| type III secretion protein, HrpO family [Burkholderia ambifaria
IOP40-10]
gi|170136700|gb|EDT04954.1| type III secretion protein, HrpO family [Burkholderia ambifaria
IOP40-10]
Length = 87
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 45/82 (54%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M ++ I + LS S PV+ A G+ I+F+QA+T +Q+ ++++ K++AV
Sbjct: 1 METDTLVRITSQGLLLCLSVSMPVVAVAALSGLAISFVQAITSMQDQSISYAVKLVAVVA 60
Query: 61 TLIISAPFIGGQISSFVTLVLS 82
T++++ + I F +++
Sbjct: 61 TVLMTGAWGAAAILRFANQIIT 82
>gi|182412232|ref|YP_001817298.1| export protein FliQ [Opitutus terrae PB90-1]
gi|177839446|gb|ACB73698.1| export protein FliQ family 3 [Opitutus terrae PB90-1]
Length = 89
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 50/86 (58%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN ++ + + L +AP L + +G++ + LQ++T +QE TLTF+PK+I +
Sbjct: 1 MNPELAIDFFKTTVVFALYIAAPFLLLTLVIGLVTSLLQSITSLQEQTLTFIPKLIGIGG 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
L+I P++ +S F ++SR+ +
Sbjct: 61 LLLILTPWLLRSLSEFAITMISRMGT 86
>gi|229160729|ref|ZP_04288721.1| Flagellar biosynthesis protein fliQ [Bacillus cereus R309803]
gi|228622744|gb|EEK79578.1| Flagellar biosynthesis protein fliQ [Bacillus cereus R309803]
Length = 91
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 52/88 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN + +++I + + + PV +M + I+IA + A+ QIQE TLTF+PK+ ++ +
Sbjct: 1 MNTSPIIDIFQTFFYKGVMILMPVAGVSMIVVIIIAVIMAMMQIQEQTLTFLPKMASIVL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+II P++ +++ + + +I S L
Sbjct: 61 VIIILGPWMFQELTMLILDLFDKIPSLL 88
>gi|76818013|ref|YP_335590.1| type III secretion inner membrane protein SctS [Burkholderia
pseudomallei 1710b]
gi|126443963|ref|YP_001062996.1| HrpO family type III secretion protein [Burkholderia pseudomallei
668]
gi|126455867|ref|YP_001075943.1| HrpO family type III secretion protein [Burkholderia pseudomallei
1106a]
gi|134282456|ref|ZP_01769160.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 305]
gi|167742992|ref|ZP_02415766.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 14]
gi|167828538|ref|ZP_02460009.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 9]
gi|167849996|ref|ZP_02475504.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei B7210]
gi|167898605|ref|ZP_02486006.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 7894]
gi|167906947|ref|ZP_02494152.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei NCTC 13177]
gi|167915306|ref|ZP_02502397.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 112]
gi|167923139|ref|ZP_02510230.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei BCC215]
gi|217425305|ref|ZP_03456799.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 576]
gi|226199049|ref|ZP_03794611.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei Pakistan 9]
gi|237507517|ref|ZP_04520232.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei MSHR346]
gi|242311426|ref|ZP_04810443.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 1106b]
gi|254183806|ref|ZP_04890398.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 1655]
gi|254186720|ref|ZP_04893236.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei Pasteur 52237]
gi|254193606|ref|ZP_04900038.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei S13]
gi|254263098|ref|ZP_04953963.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 1710a]
gi|254301599|ref|ZP_04969043.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 406e]
gi|4206079|gb|AAD11412.1| SctS [Burkholderia pseudomallei]
gi|48479066|gb|AAT44856.1| putative type III secretory pathway and flagellar biosynthesis
protein [Burkholderia pseudomallei]
gi|76582486|gb|ABA51960.1| type III secretion inner membrane protein SctS [Burkholderia
pseudomallei 1710b]
gi|126223454|gb|ABN86959.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 668]
gi|126229635|gb|ABN93048.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 1106a]
gi|134246013|gb|EBA46103.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 305]
gi|157811488|gb|EDO88658.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 406e]
gi|157934404|gb|EDO90074.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei Pasteur 52237]
gi|169650357|gb|EDS83050.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei S13]
gi|184214339|gb|EDU11382.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 1655]
gi|217391556|gb|EEC31584.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 576]
gi|225928824|gb|EEH24849.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei Pakistan 9]
gi|234999722|gb|EEP49146.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei MSHR346]
gi|242134665|gb|EES21068.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 1106b]
gi|254214100|gb|EET03485.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 1710a]
Length = 87
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 45/82 (54%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M ++ AM LS S P + A +G+ ++F+QA+T +Q+ TL V K+IAV I
Sbjct: 1 MEIDSLIRFCTQAMLLCLSVSLPPVIVAALVGLGVSFVQAITSLQDQTLPQVLKLIAVTI 60
Query: 61 TLIISAPFIGGQISSFVTLVLS 82
T++++AP I F ++
Sbjct: 61 TIMVAAPTGCAAILHFANQMMQ 82
>gi|157961200|ref|YP_001501234.1| flagellar biosynthetic protein FliQ [Shewanella pealeana ATCC
700345]
gi|157846200|gb|ABV86699.1| flagellar biosynthetic protein FliQ [Shewanella pealeana ATCC
700345]
Length = 89
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 45/85 (52%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ +++I R A+ I+ + ++ + +G+++A QA T I E TL+F+P+++ +
Sbjct: 1 MSPESLVDIFREALAVIVIIVSMIIVPGLIIGLVVAVFQAATSINEQTLSFLPRLLTTLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
L++ + + F ++ I
Sbjct: 61 ALMLMGHLLIQMMMDFFMQMVDMIP 85
>gi|302387778|ref|YP_003823600.1| export protein FliQ family 3 [Clostridium saccharolyticum WM1]
gi|302198406|gb|ADL05977.1| export protein FliQ family 3 [Clostridium saccharolyticum WM1]
Length = 86
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 44/84 (52%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M E + + + + PVL +M +G++I+ LQA TQI E T+TFVPK+I + +
Sbjct: 1 MTEVALSSLMYEMFGLAVKLAGPVLVVSMVVGVVISILQAATQIHEQTITFVPKLIVIGL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
L+I + + F + + +
Sbjct: 61 VLLIMGSNMMESLRDFTIHIFNTM 84
>gi|188992475|ref|YP_001904485.1| hypothetical protein xccb100_3080 [Xanthomonas campestris pv.
campestris str. B100]
gi|325917010|ref|ZP_08179249.1| HrcS protein [Xanthomonas vesicatoria ATCC 35937]
gi|325921930|ref|ZP_08183741.1| HrcS protein [Xanthomonas gardneri ATCC 19865]
gi|167734235|emb|CAP52443.1| putative membrane protein [Xanthomonas campestris pv. campestris]
gi|325536761|gb|EGD08518.1| HrcS protein [Xanthomonas vesicatoria ATCC 35937]
gi|325547632|gb|EGD18675.1| HrcS protein [Xanthomonas gardneri ATCC 19865]
Length = 86
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 44/82 (53%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ D++ A+ L S PV+ A G+LIAF+QA+ +Q+ +++F K++ V
Sbjct: 1 MDHDDLVRFTSEALLLCLKVSLPVVGVAAVAGLLIAFIQAVMSLQDASISFALKLVVVVA 60
Query: 61 TLIISAPFIGGQISSFVTLVLS 82
+ ++AP+ I F ++
Sbjct: 61 AIAVTAPWGASAIMQFGQALMQ 82
>gi|251789492|ref|YP_003004213.1| HrpO family type III secretion protein [Dickeya zeae Ech1591]
gi|247538113|gb|ACT06734.1| type III secretion protein, HrpO family [Dickeya zeae Ech1591]
Length = 86
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 49/81 (60%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
+ L + R AM ++ SAP L A+ +G+LI+ LQA+ Q+Q+ TL F K++AV + L +
Sbjct: 2 ETLNLFRQAMVLVVMLSAPPLLVAVVVGVLISLLQAVMQLQDQTLPFAVKLVAVGLVLAM 61
Query: 65 SAPFIGGQISSFVTLVLSRIQ 85
+ +IG ++ + + I+
Sbjct: 62 TGRWIGVELIQLAMMAFNMIE 82
>gi|172064929|ref|YP_001815641.1| HrpO family type III secretion protein [Burkholderia ambifaria
MC40-6]
gi|171997171|gb|ACB68088.1| type III secretion protein, HrpO family [Burkholderia ambifaria
MC40-6]
Length = 87
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 45/82 (54%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M ++ I + LS S PV+ A G+ I+F+QA+T +Q+ ++++ K++AV
Sbjct: 1 METDTLVRITSQGLLLCLSVSMPVVAVAALSGLAISFVQAITSMQDQSISYAVKLVAVVA 60
Query: 61 TLIISAPFIGGQISSFVTLVLS 82
T++++ + I F +++
Sbjct: 61 TVLMTGAWGAAAILRFANQIVT 82
>gi|33592491|ref|NP_880135.1| flagellar biosynthetic protein FliQ [Bordetella pertussis Tohama
I]
gi|33596148|ref|NP_883791.1| flagellar biosynthetic protein FliQ [Bordetella parapertussis
12822]
gi|33601554|ref|NP_889114.1| flagellar biosynthetic protein FliQ [Bordetella bronchiseptica
RB50]
gi|33572137|emb|CAE41680.1| flagellar biosynthetic protein FliQ [Bordetella pertussis Tohama
I]
gi|33573151|emb|CAE36801.1| flagellar biosynthetic protein FliQ [Bordetella parapertussis]
gi|33575990|emb|CAE33070.1| flagellar biosynthetic protein FliQ [Bordetella bronchiseptica
RB50]
gi|332381909|gb|AEE66756.1| flagellar biosynthetic protein FliQ [Bordetella pertussis CS]
Length = 89
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 53/85 (62%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+ + A+ L+ + P+L + +G++I+ QA TQI E+TL+F+PK++A+
Sbjct: 1 MTAETVMSMTYQALKVALALAGPLLLVTLIVGLVISIFQAATQINEMTLSFIPKLLAMCG 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
TL++ P++ G ++ ++ ++ +I
Sbjct: 61 TLVLLGPWLLGLLTDYIRQLIGQIP 85
>gi|53722432|ref|YP_111417.1| type III secretion-associated protein [Burkholderia pseudomallei
K96243]
gi|167724023|ref|ZP_02407259.1| type III secretion-associated protein [Burkholderia pseudomallei
DM98]
gi|167820163|ref|ZP_02451843.1| type III secretion-associated protein [Burkholderia pseudomallei
91]
gi|52212846|emb|CAH38880.1| putative type III secretion-associated protein [Burkholderia
pseudomallei K96243]
Length = 87
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 45/82 (54%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M ++ AM L+ S P + A +G+ ++F+QA+T +Q+ TL V K+IAV I
Sbjct: 1 MEIDSLIRFCTQAMLLCLTVSLPPVIVAALVGLGVSFVQAITSLQDQTLPQVLKLIAVTI 60
Query: 61 TLIISAPFIGGQISSFVTLVLS 82
T++++AP I F ++
Sbjct: 61 TIMVAAPTGCAAILHFANQMMQ 82
>gi|291529027|emb|CBK94613.1| Flagellar biosynthesis pathway, component FliQ [Eubacterium
rectale M104/1]
Length = 61
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 28/59 (47%), Positives = 45/59 (76%)
Query: 2 NEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
+ VL+IAR A++T + +SAP+L ++ +G++++ Q +T IQE TLTFVPKIIA+F+
Sbjct: 3 TQEAVLDIAREAIYTTIITSAPLLLISLIVGLIVSIFQTVTSIQEQTLTFVPKIIAIFL 61
>gi|58579703|ref|YP_198719.1| hypothetical protein XOO0080 [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|84621753|ref|YP_449125.1| HrcS protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|12802686|gb|AAK08057.1|AF320050_1 HrcS [Xanthomonas oryzae pv. oryzae]
gi|15341497|gb|AAK95646.1|AF404818_1 HrcS [Xanthomonas oryzae pv. oryzae]
gi|7288132|dbj|BAA92827.1| hrpD3 [Xanthomonas oryzae pv. oryzae]
gi|9711594|dbj|BAB07863.1| HrcS [Xanthomonas oryzae pv. oryzae]
gi|24251299|gb|AAN46418.1| HrcS [Xanthomonas oryzae pv. oryzae]
gi|50428357|dbj|BAD29994.1| HrcS [Xanthomonas oryzae pv. oryzae]
gi|58424297|gb|AAW73334.1| HrcS protein [Xanthomonas oryzae pv. oryzae KACC10331]
gi|84365693|dbj|BAE66851.1| HrcS protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
Length = 86
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 44/82 (53%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ D++ A+ L S PV+ A G+LIAF+QA+ +Q+ +++F K++ V
Sbjct: 1 MDHDDLVRFTSEALLLCLKVSLPVVGVAALTGLLIAFVQAVMSLQDASISFALKLVVVVA 60
Query: 61 TLIISAPFIGGQISSFVTLVLS 82
+ ++AP+ I F ++
Sbjct: 61 AIAVTAPWGASAIMQFGQALMQ 82
>gi|78045977|ref|YP_362152.1| HrcS protein [Xanthomonas campestris pv. vesicatoria str. 85-10]
gi|325927672|ref|ZP_08188900.1| HrcS protein [Xanthomonas perforans 91-118]
gi|4494849|gb|AAD21322.1| HrcS [Xanthomonas euvesicatoria]
gi|78034407|emb|CAJ22052.1| HrcS protein [Xanthomonas campestris pv. vesicatoria str. 85-10]
gi|159024058|gb|ABW87286.1| HrcS [Xanthomonas fuscans subsp. fuscans]
gi|325541873|gb|EGD13387.1| HrcS protein [Xanthomonas perforans 91-118]
Length = 86
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 44/82 (53%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ D++ A+ L S PV+ A G+LIAF+QA+ +Q+ +++F K++ V
Sbjct: 1 MDHDDLVRFTSEALLLCLKVSLPVVGVAALAGLLIAFVQAVMSLQDASISFALKLVVVVA 60
Query: 61 TLIISAPFIGGQISSFVTLVLS 82
+ ++AP+ I F ++
Sbjct: 61 AIAVTAPWGASAIMQFGQALMQ 82
>gi|315126006|ref|YP_004068009.1| flagellar biosynthetic protein FliQ [Pseudoalteromonas sp.
SM9913]
gi|315014520|gb|ADT67858.1| flagellar biosynthetic protein FliQ [Pseudoalteromonas sp.
SM9913]
Length = 89
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 45/88 (51%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +E+ +A++TI+ ++ + LGI++A +Q T IQE TLTF+P+++ +
Sbjct: 1 MTPEMSVELISSAVYTIIKLILVLIVPGLLLGIVVAIIQGATSIQEQTLTFLPRMLLTLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
++ + ++ + + + +
Sbjct: 61 MVVFAGHWMLQILIDWFDKLKFMLPGVF 88
>gi|299066523|emb|CBJ37713.1| Flagellar biosynthesis protein Q [Ralstonia solanacearum CMR15]
Length = 58
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 36/58 (62%)
Query: 31 LGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSRIQSSL 88
+G I+ LQ +TQ+QE +LTFVPK++ I+LI+ P++ + F + S I S +
Sbjct: 1 MGFFISLLQVVTQVQENSLTFVPKLLTAVISLIVFGPWMLRKFVQFSVHLWSEIPSMI 58
>gi|21241174|ref|NP_640756.1| HrcS protein [Xanthomonas axonopodis pv. citri str. 306]
gi|5679189|gb|AAD46903.1|AF160974_6 HrcS homolog [Xanthomonas campestris pv. glycines]
gi|30524905|gb|AAP34350.1|AF499777_18 HrcS [Xanthomonas axonopodis pv. glycines]
gi|21106481|gb|AAM35292.1| HrcS protein [Xanthomonas axonopodis pv. citri str. 306]
Length = 86
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 44/82 (53%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ D++ A+ L S PV+ A G+LIAF+QA+ +Q+ +++F K++ V
Sbjct: 1 MDHDDLVRFTSEALLLCLKVSLPVVGVAALAGLLIAFIQAVMSLQDASISFALKLVVVVA 60
Query: 61 TLIISAPFIGGQISSFVTLVLS 82
+ ++AP+ I F ++
Sbjct: 61 AIAVTAPWGASAIMQFGQALMQ 82
>gi|229178175|ref|ZP_04305546.1| Flagellar biosynthesis protein fliQ [Bacillus cereus 172560W]
gi|228605305|gb|EEK62755.1| Flagellar biosynthesis protein fliQ [Bacillus cereus 172560W]
Length = 91
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 53/88 (60%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN + +++I + + + P+ ++ + I+IA + A+ QIQE TLTF+PK+ ++ +
Sbjct: 1 MNTSPIIDIFQTFFYKGVMILMPIAVVSLIVVIIIAVIMAMMQIQEQTLTFLPKMASIVL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+II P++ ++++ + + +I S L
Sbjct: 61 VIIILGPWMFQELTTLILDLFDKIPSLL 88
>gi|254575133|gb|ACT68034.1| type III secretion apparatus [Pantoea stewartii subsp. stewartii
DC283]
Length = 84
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 39/76 (51%)
Query: 6 VLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIIS 65
VL I A+ +L +A + A +GI++ Q + QIQE TL F K++AVF ++ +
Sbjct: 4 VLFIGNTALIVVLKLTAVPIAFATVVGIIVGLFQTIMQIQEQTLPFGLKMLAVFASIFML 63
Query: 66 APFIGGQISSFVTLVL 81
+ ++ +F
Sbjct: 64 IEWFSAEMMNFANQAF 79
>gi|271500420|ref|YP_003333445.1| type III secretion protein, HrpO family [Dickeya dadantii Ech586]
gi|270343975|gb|ACZ76740.1| type III secretion protein, HrpO family [Dickeya dadantii Ech586]
Length = 86
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 49/81 (60%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
+ L + R AM ++ SAP L A+ +G+LI+ LQA+ Q+Q+ TL F K++AV + L +
Sbjct: 2 ETLTLFRQAMVLVVMLSAPPLLVAVVVGVLISLLQAVMQLQDQTLPFAVKLVAVGLVLAM 61
Query: 65 SAPFIGGQISSFVTLVLSRIQ 85
+ +IG ++ + + I+
Sbjct: 62 TGRWIGVELIQLAVMAFNMIE 82
>gi|239815244|ref|YP_002944154.1| export protein FliQ family 3 [Variovorax paradoxus S110]
gi|239801821|gb|ACS18888.1| export protein FliQ family 3 [Variovorax paradoxus S110]
Length = 60
Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 38/60 (63%)
Query: 29 MFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSRIQSSL 88
M +G+ ++ LQ +TQIQE++LTFVPK+ +I++ P++ +++ F + S I S
Sbjct: 1 MLVGVAVSVLQVVTQIQEMSLTFVPKLFTAGAVMILAGPWMLRKLTQFTVQLWSGIPSMF 60
>gi|167915627|ref|ZP_02502718.1| type III secretion protein, HrpO family [Burkholderia
pseudomallei 112]
Length = 87
Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 46/82 (56%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M D++ + M L S PV+ A G+ I+FLQA+T +QE ++++ K++AV +
Sbjct: 1 MEIDDLIRLTSQGMMLCLYISLPVVLVAAASGLAISFLQAITSLQEQSISYGVKLVAVTV 60
Query: 61 TLIISAPFIGGQISSFVTLVLS 82
T I+ P+ +I F ++S
Sbjct: 61 TAAIAGPWAAAEILHFAQQLMS 82
>gi|147678410|ref|YP_001212625.1| flagellar biosynthesis pathway, component FliQ [Pelotomaculum
thermopropionicum SI]
gi|146274507|dbj|BAF60256.1| flagellar biosynthesis pathway, component FliQ [Pelotomaculum
thermopropionicum SI]
Length = 89
Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 51/88 (57%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + V+ +AR A+ +L+ + P + A+ +G++I+ LQA TQIQ+ L VPKI+ VF+
Sbjct: 1 MTQTYVIHLAREALLLVLALAGPAMAVALLIGLVISILQATTQIQDQMLNLVPKIVGVFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L++ ++ SF + +I +
Sbjct: 61 VLLVLGAWMLNSAVSFTLNLFGQIPDLV 88
>gi|307947533|ref|ZP_07662866.1| RhcS protein [Roseibium sp. TrichSKD4]
gi|307769351|gb|EFO28579.1| RhcS protein [Roseibium sp. TrichSKD4]
Length = 89
Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 37/86 (43%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +A I ++ + + P L A + LI QA+TQIQE TL KI+ + I
Sbjct: 1 MGDAAYATILYEILYDAVIFTGPPLILATLIAFLIGLFQAVTQIQEQTLPQTLKIVVITI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
L+ + + + + + +
Sbjct: 61 ILLFFGNVLAAPLYATTLNIFNNFGT 86
>gi|254253709|ref|ZP_04947026.1| Type III secretory pathway component EscS [Burkholderia dolosa
AUO158]
gi|124898354|gb|EAY70197.1| Type III secretory pathway component EscS [Burkholderia dolosa
AUO158]
Length = 87
Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 44/82 (53%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M ++ I + LS S PV+ A G+ I+F+QA+T +Q+ ++++ K++AV
Sbjct: 1 METDTLVRITSQGLLLCLSVSMPVVAVAALSGLAISFVQAITSMQDQSISYAVKLVAVVA 60
Query: 61 TLIISAPFIGGQISSFVTLVLS 82
T+++ + I F +++
Sbjct: 61 TVLMIGAWGAAAILRFANQIVT 82
>gi|94968669|ref|YP_590717.1| export protein FliQ [Candidatus Koribacter versatilis Ellin345]
gi|94550719|gb|ABF40643.1| export protein FliQ, family 3 [Candidatus Koribacter versatilis
Ellin345]
Length = 89
Score = 44.8 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 45/81 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ + +E+ R + ++ + P+L +A + +LI +Q LT +QE T++ VP+++ +
Sbjct: 1 MDTSITIELGRRTLEAAITLALPLLLAATVVSLLINIVQVLTSLQETTISTVPRLLTMAA 60
Query: 61 TLIISAPFIGGQISSFVTLVL 81
+ P++ +I F T +
Sbjct: 61 AAFLLLPWMVRKIGWFTTDLF 81
>gi|166714031|ref|ZP_02245238.1| HrcS [Xanthomonas oryzae pv. oryzicola BLS256]
gi|15341499|gb|AAK95647.1|AF404819_1 HrcS [Xanthomonas oryzae pv. oryzicola]
gi|111146914|gb|ABH07399.1| HrcS [Xanthomonas oryzae pv. oryzicola]
Length = 86
Score = 44.8 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 44/82 (53%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ D++ A+ L S PV+ A G+LIAF+QA+ +Q+ +++F K++ V
Sbjct: 1 MDHDDLVRFTSEALLLCLKVSLPVVSVAALTGLLIAFVQAVMSLQDASISFALKLVVVVA 60
Query: 61 TLIISAPFIGGQISSFVTLVLS 82
+ ++AP+ I F ++
Sbjct: 61 AIAVTAPWGASAIMQFGQALMQ 82
>gi|289663756|ref|ZP_06485337.1| hypothetical protein XcampvN_11949 [Xanthomonas campestris pv.
vasculorum NCPPB702]
gi|289668178|ref|ZP_06489253.1| hypothetical protein XcampmN_06705 [Xanthomonas campestris pv.
musacearum NCPPB4381]
Length = 86
Score = 44.8 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 44/82 (53%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ D++ A+ L S PV+ A G+LIAF+QA+ +Q+ +++F K++ V
Sbjct: 1 MDHDDLVRFTSEALLLCLKVSLPVVAVAALAGLLIAFIQAVMSLQDASISFALKLVVVVA 60
Query: 61 TLIISAPFIGGQISSFVTLVLS 82
+ ++AP+ I F ++
Sbjct: 61 AIAVTAPWGASAIMQFGQALMQ 82
>gi|222082190|ref|YP_002541555.1| flagellar biosynthetic protein (fliQ) [Agrobacterium radiobacter
K84]
gi|221726869|gb|ACM29958.1| flagellar biosynthetic protein (fliQ) [Agrobacterium radiobacter
K84]
Length = 89
Score = 44.8 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 40/88 (45%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + + A++ + + P+L A LG++IA QA TQIQE T+ + KI +
Sbjct: 1 MGQEQISAEIGASILATFALAGPMLGLAAILGLVIAIFQAATQIQEQTIAQIVKIFVLSF 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L++ + + + + + +
Sbjct: 61 VLLVFGRALATPLLEHSIHIFNDFPTMV 88
>gi|259908637|ref|YP_002648993.1| Type III secretion apparatus [Erwinia pyrifoliae Ep1/96]
gi|224964259|emb|CAX55766.1| Type III secretion apparatus [Erwinia pyrifoliae Ep1/96]
gi|283478609|emb|CAY74525.1| Surface presentation of antigens protein spaQ [Erwinia pyrifoliae
DSM 12163]
Length = 84
Score = 44.5 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 41/77 (53%)
Query: 7 LEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISA 66
L I+ AA+ +L +A + A +GI++ Q + QIQE TL F K++AVF ++ +
Sbjct: 5 LFISNAALVVVLKLTAVPIAFATLVGIIVGLFQTIMQIQEQTLPFGLKMLAVFASIFMLI 64
Query: 67 PFIGGQISSFVTLVLSR 83
+ ++ +F S
Sbjct: 65 EWFSAEMLNFANQAFSM 81
>gi|207110683|ref|ZP_03244845.1| flagellar biosynthesis protein FliQ [Helicobacter pylori
HPKX_438_CA4C1]
Length = 74
Score = 44.5 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 7 LEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISA 66
+++A L S PVL + + +G+L++ QA TQI E+TL+FVPKI+AV LI++
Sbjct: 1 MKLAIETYKITLMISLPVLLAGLVVGLLVSIFQATTQINEMTLSFVPKILAVIGVLILTM 60
Query: 67 PFIGGQISSFVTLV 80
P++ + + +
Sbjct: 61 PWMTNMLLDYTQTL 74
>gi|209920316|ref|YP_002294400.1| putative type III secretion protein [Escherichia coli SE11]
gi|300815710|ref|ZP_07095934.1| putative surface presentation of antigens protein SpaQ
[Escherichia coli MS 107-1]
gi|307310521|ref|ZP_07590169.1| export protein FliQ family 3 [Escherichia coli W]
gi|312972919|ref|ZP_07787092.1| epaQ [Escherichia coli 1827-70]
gi|331654350|ref|ZP_08355350.1| surface presentation of antigens protein SpaQ [Escherichia coli
M718]
gi|209913575|dbj|BAG78649.1| putative type III secretion protein [Escherichia coli SE11]
gi|300531639|gb|EFK52701.1| putative surface presentation of antigens protein SpaQ
[Escherichia coli MS 107-1]
gi|306909416|gb|EFN39911.1| export protein FliQ family 3 [Escherichia coli W]
gi|310332861|gb|EFQ00075.1| epaQ [Escherichia coli 1827-70]
gi|320202505|gb|EFW77075.1| Surface presentation of antigens protein SpaQ [Escherichia coli
EC4100B]
gi|323153850|gb|EFZ40086.1| epaQ [Escherichia coli EPECa14]
gi|324119901|gb|EGC13780.1| export protein 3 [Escherichia coli E1167]
gi|331047732|gb|EGI19809.1| surface presentation of antigens protein SpaQ [Escherichia coli
M718]
Length = 61
Score = 44.1 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 4 ADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLI 63
D++ A++ IL SA + A F+G+L+ Q +TQ+QE TL F K++ V I
Sbjct: 2 DDIVFAGNRALYLILVMSAGPIAVATFVGLLVGLFQTVTQLQEQTLPFGVKLLCVSICFF 61
>gi|149926085|ref|ZP_01914348.1| hypothetical protein LMED105_03515 [Limnobacter sp. MED105]
gi|149825373|gb|EDM84584.1| hypothetical protein LMED105_03515 [Limnobacter sp. MED105]
Length = 88
Score = 44.1 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 39/80 (48%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
++ A+W L +APV+ M LG+L+ FLQA+ Q+Q+ L F K++ V + L
Sbjct: 1 MLIYYVNQALWISLLVAAPVVVVTMVLGLLLGFLQAIFQLQDQALPFGIKLMGVVLILFA 60
Query: 65 SAPFIGGQISSFVTLVLSRI 84
+ + F + I
Sbjct: 61 LGSWQSQMLVQFTQTMFDLI 80
>gi|27376931|ref|NP_768460.1| RhcS protein [Bradyrhizobium japonicum USDA 110]
gi|12620527|gb|AAG60803.1|AF322012_108 RhcS [Bradyrhizobium japonicum]
gi|27350073|dbj|BAC47085.1| RhcS protein [Bradyrhizobium japonicum USDA 110]
gi|119391679|emb|CAJ46464.1| RhcS protein [Bradyrhizobium japonicum]
gi|119391683|emb|CAJ46467.1| RhcS protein [Bradyrhizobium liaoningense]
gi|145207705|emb|CAJ90697.1| RhcS protein [Bradyrhizobium sp. MSDJ 5327]
gi|145207717|emb|CAJ90706.1| RhcS protein [Bradyrhizobium japonicum]
Length = 91
Score = 44.1 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 40/86 (46%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEA +L ++ + P L +A+ G++I +QA TQ+Q+ TL K++ V
Sbjct: 1 MNEASILTHLSQSLVLFMIWVLPPLLAALISGLIIGLIQAATQLQDQTLPLTVKLLVVVA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
L +P + + + S +
Sbjct: 61 VLAGFSPVLSAPLIDQAERIFSEFPA 86
>gi|292488068|ref|YP_003530945.1| surface presentation of antigens protein spaQ [Erwinia amylovora
CFBP1430]
gi|292899279|ref|YP_003538648.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
gi|291199127|emb|CBJ46241.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
gi|291553492|emb|CBA20537.1| Surface presentation of antigens protein spaQ [Erwinia amylovora
CFBP1430]
gi|312172196|emb|CBX80453.1| Surface presentation of antigens protein spaQ [Erwinia amylovora
ATCC BAA-2158]
Length = 84
Score = 44.1 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 41/77 (53%)
Query: 7 LEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISA 66
L I+ AA+ +L +A + A +GI++ Q + QIQE TL F K++AVF ++ +
Sbjct: 5 LFISNAALVVVLKLTAVPVAFATLVGIVVGLFQTIMQIQEQTLPFGLKMLAVFASIFMLI 64
Query: 67 PFIGGQISSFVTLVLSR 83
+ ++ +F S
Sbjct: 65 EWFSAEMLNFANQAFSM 81
>gi|163939577|ref|YP_001644461.1| flagellar biosynthesis protein FliQ [Bacillus weihenstephanensis
KBAB4]
gi|229011060|ref|ZP_04168254.1| Flagellar biosynthesis protein fliQ [Bacillus mycoides DSM 2048]
gi|229058416|ref|ZP_04196800.1| Flagellar biosynthesis protein fliQ [Bacillus cereus AH603]
gi|229166622|ref|ZP_04294374.1| Flagellar biosynthesis protein fliQ [Bacillus cereus AH621]
gi|163861774|gb|ABY42833.1| flagellar biosynthetic protein FliQ [Bacillus weihenstephanensis
KBAB4]
gi|228616876|gb|EEK73949.1| Flagellar biosynthesis protein fliQ [Bacillus cereus AH621]
gi|228719925|gb|EEL71515.1| Flagellar biosynthesis protein fliQ [Bacillus cereus AH603]
gi|228750232|gb|EEM00064.1| Flagellar biosynthesis protein fliQ [Bacillus mycoides DSM 2048]
Length = 91
Score = 44.1 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 52/88 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN + +++I + + + P+ +M + I+IA + A+ QIQE TLTF+PK+ ++ +
Sbjct: 1 MNTSPIIDIFQTFFYKGVMILMPIAVVSMIVVIIIAVIMAMMQIQEQTLTFLPKMASIVL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+II P++ +++ + + +I S L
Sbjct: 61 VIIILGPWMFQELTMLILDLFDKIPSLL 88
>gi|75763364|ref|ZP_00743102.1| Flagellar biosynthetic protein fliQ [Bacillus thuringiensis
serovar israelensis ATCC 35646]
gi|218233470|ref|YP_002366452.1| flagellar biosynthesis protein FliQ [Bacillus cereus B4264]
gi|218896701|ref|YP_002445112.1| putative flagellar biosynthetic protein FliQ [Bacillus cereus
G9842]
gi|228900349|ref|ZP_04064578.1| Flagellar biosynthesis protein fliQ [Bacillus thuringiensis IBL
4222]
gi|228907400|ref|ZP_04071258.1| Flagellar biosynthesis protein fliQ [Bacillus thuringiensis IBL
200]
gi|228938880|ref|ZP_04101480.1| Flagellar biosynthesis protein fliQ [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228964751|ref|ZP_04125858.1| Flagellar biosynthesis protein fliQ [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228971761|ref|ZP_04132382.1| Flagellar biosynthesis protein fliQ [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228978370|ref|ZP_04138747.1| Flagellar biosynthesis protein fliQ [Bacillus thuringiensis
Bt407]
gi|229043523|ref|ZP_04191232.1| Flagellar biosynthesis protein fliQ [Bacillus cereus AH676]
gi|229109223|ref|ZP_04238822.1| Flagellar biosynthesis protein fliQ [Bacillus cereus Rock1-15]
gi|229149972|ref|ZP_04278198.1| Flagellar biosynthesis protein fliQ [Bacillus cereus m1550]
gi|296502368|ref|YP_003664068.1| flagellar biosynthesis protein FliQ [Bacillus thuringiensis
BMB171]
gi|74489155|gb|EAO52633.1| Flagellar biosynthetic protein fliQ [Bacillus thuringiensis
serovar israelensis ATCC 35646]
gi|218161427|gb|ACK61419.1| putative flagellar biosynthetic protein FliQ [Bacillus cereus
B4264]
gi|218544520|gb|ACK96914.1| putative flagellar biosynthetic protein FliQ [Bacillus cereus
G9842]
gi|228633494|gb|EEK90097.1| Flagellar biosynthesis protein fliQ [Bacillus cereus m1550]
gi|228674233|gb|EEL29478.1| Flagellar biosynthesis protein fliQ [Bacillus cereus Rock1-15]
gi|228725745|gb|EEL76993.1| Flagellar biosynthesis protein fliQ [Bacillus cereus AH676]
gi|228781387|gb|EEM29588.1| Flagellar biosynthesis protein fliQ [Bacillus thuringiensis
Bt407]
gi|228787851|gb|EEM35809.1| Flagellar biosynthesis protein fliQ [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228795001|gb|EEM42500.1| Flagellar biosynthesis protein fliQ [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228820729|gb|EEM66754.1| Flagellar biosynthesis protein fliQ [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228852261|gb|EEM97057.1| Flagellar biosynthesis protein fliQ [Bacillus thuringiensis IBL
200]
gi|228859236|gb|EEN03667.1| Flagellar biosynthesis protein fliQ [Bacillus thuringiensis IBL
4222]
gi|296323420|gb|ADH06348.1| flagellar biosynthesis protein FliQ [Bacillus thuringiensis
BMB171]
gi|326939380|gb|AEA15276.1| flagellar biosynthesis protein FliQ [Bacillus thuringiensis
serovar chinensis CT-43]
Length = 91
Score = 44.1 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 52/88 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN + +++I + + + P+ ++ + I+IA + A+ QIQE TLTF+PK+ ++ +
Sbjct: 1 MNTSPIIDIFQTFFYKGVMILMPIAVVSLIVVIIIAVIMAMMQIQEQTLTFLPKMASIVL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+II P++ +++ + + +I S L
Sbjct: 61 VIIILGPWMFQELTMLILDLFDKIPSLL 88
>gi|301303008|ref|ZP_07209135.1| putative surface presentation of antigens protein SpaQ
[Escherichia coli MS 124-1]
gi|300841672|gb|EFK69432.1| putative surface presentation of antigens protein SpaQ
[Escherichia coli MS 124-1]
Length = 68
Score = 44.1 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
D++ A++ IL SA + A F+G+L+ Q +TQ+QE TL F K++ V I +
Sbjct: 3 DIVFAGNRALYLILVMSAGPIAVATFVGLLVGLFQTVTQLQEQTLPFGVKLLCVSICFFL 62
>gi|323975950|gb|EGB71044.1| export protein 3 [Escherichia coli TW10509]
Length = 90
Score = 44.1 bits (103), Expect = 0.007, Method: Composition-based stats.
Identities = 18/83 (21%), Positives = 44/83 (53%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
+ +I + + ++ + ++ ++ +G+L++ QA+TQI E TL+F+P++I +
Sbjct: 2 LTVDVAADIVASGIKVVILLVSVLVVPSLLVGLLVSVFQAVTQINEQTLSFLPRLIVTLV 61
Query: 61 TLIISAPFIGGQISSFVTLVLSR 83
L I ++ Q+ + S+
Sbjct: 62 VLGICGKWMITQLHDLCIHLFSQ 84
>gi|292487272|ref|YP_003530144.1| surface presentation of antigens protein spaQ [Erwinia amylovora
CFBP1430]
gi|292900356|ref|YP_003539725.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
gi|291200204|emb|CBJ47332.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
gi|291552691|emb|CBA19736.1| Surface presentation of antigens protein spaQ [Erwinia amylovora
CFBP1430]
gi|312171380|emb|CBX79639.1| Surface presentation of antigens protein spaQ [Erwinia amylovora
ATCC BAA-2158]
Length = 84
Score = 43.7 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 39/76 (51%)
Query: 6 VLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIIS 65
VL I +A+ +L +A + A +GI + Q + QIQE TL F K++AVF ++ +
Sbjct: 4 VLFIGNSALIIVLKLTAVPIALATVVGIFVGLFQTVMQIQEQTLPFGLKMLAVFASIFML 63
Query: 66 APFIGGQISSFVTLVL 81
+ ++ +F
Sbjct: 64 IEWFSAEMMNFAIQAF 79
>gi|145207713|emb|CAJ90703.1| RhcS protein [Bradyrhizobium japonicum]
Length = 91
Score = 43.7 bits (102), Expect = 0.009, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 39/86 (45%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEA +L ++ + P L +A+ G +I +QA TQ+Q+ TL K++ V
Sbjct: 1 MNEASILTHLSQSLVLFMIWVLPPLLAALISGPIIGLIQAATQLQDQTLPLTVKLLVVVA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
L +P + + + S +
Sbjct: 61 VLAGFSPVLSAPLIDQAERIFSEFPA 86
>gi|213580303|ref|ZP_03362129.1| secretory protein (associated with virulence) [Salmonella
enterica subsp. enterica serovar Typhi str. E98-0664]
Length = 63
Score = 43.7 bits (102), Expect = 0.009, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 32/62 (51%)
Query: 4 ADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLI 63
D++ A++ +L S A +G+L+ Q +TQ+QE TL F K++ V + L
Sbjct: 2 DDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLF 61
Query: 64 IS 65
+
Sbjct: 62 LL 63
>gi|212634378|ref|YP_002310903.1| flagellar biosynthesis protein FliQ [Shewanella piezotolerans
WP3]
gi|212555862|gb|ACJ28316.1| Flagellar biosynthesis protein FliQ [Shewanella piezotolerans
WP3]
Length = 89
Score = 43.7 bits (102), Expect = 0.009, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 46/85 (54%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +++I R A+ I++ + ++ + +G+++A QA T I E TL+F+P+++ +
Sbjct: 1 MTPEALIDIFREALAVIVTIVSMIIVPGLIVGLIVAVFQAATSINEQTLSFLPRLLTTLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
L++ + + F +++ I
Sbjct: 61 GLMLMGHLLVQTMMEFFMQMVNMIP 85
>gi|254521490|ref|ZP_05133545.1| flagellar biosynthesis [Stenotrophomonas sp. SKA14]
gi|219719081|gb|EED37606.1| flagellar biosynthesis [Stenotrophomonas sp. SKA14]
Length = 83
Score = 43.7 bits (102), Expect = 0.010, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 42/82 (51%)
Query: 7 LEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISA 66
+ R + T+L + P+L + + +G+++ +QA TQ+ E T+ FV K A+ L
Sbjct: 1 MTELRGGLITVLWVAGPLLLTVLVVGVVVGVVQAATQLNEPTIAFVAKAAALTAVLFALG 60
Query: 67 PFIGGQISSFVTLVLSRIQSSL 88
+ G + F TL+ RI +
Sbjct: 61 SLLIGHLVEFTTLLFQRIPHLI 82
>gi|16520045|ref|NP_444165.1| innermembrane protein RhcS; component of type III secretion
apparatus [Sinorhizobium fredii NGR234]
gi|2494572|sp|P55721|Y4YM_RHISN RecName: Full=Probable translocation protein y4yM
gi|2182738|gb|AAB91952.1| innermembrane protein RhcS; component of type III secretion
apparatus [Sinorhizobium fredii NGR234]
Length = 91
Score = 43.3 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 16/86 (18%), Positives = 40/86 (46%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + ++ + ++ + P L +++ +G+ I +QA TQIQ+ +L K++ V
Sbjct: 1 MTGSSIVSLMSQSLVVFMIWILPPLIASVIVGLTIGIIQAATQIQDESLPLTVKLLVVVA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
+ + AP + + + + +
Sbjct: 61 VIGLFAPVLSAPLIELADQIFTEFPA 86
>gi|145207709|emb|CAJ90700.1| RhcS protein [Bradyrhizobium japonicum]
Length = 91
Score = 43.3 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 40/86 (46%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEA +L ++ + P L +A+ G++I +QA TQ+Q+ TL K++ V
Sbjct: 1 MNEASILTHLSQSLVLFMIWVLPPLLAALISGLIIGLIQAATQLQDQTLPLTVKLLVVVA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
L +P + + + S +
Sbjct: 61 VLAGFSPVLSAPLIDQAERIFSESPA 86
>gi|312602788|ref|YP_004022633.1| type III secretion inner membrane protein SctS [Burkholderia
rhizoxinica HKI 454]
gi|306431591|emb|CBK52143.1| type III secretion inner membrane protein SctS [Burkholderia
rhizoxinica HKI 454]
gi|312170102|emb|CBW77114.1| type III secretion inner membrane protein SctS [Burkholderia
rhizoxinica HKI 454]
Length = 87
Score = 43.3 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 42/82 (51%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ ++ + M + S P++ A +G+ ++FLQA+T +Q+ L+ K+IAV I
Sbjct: 1 MDINTLIRLTMHGMLLCMYVSLPIVSVAAAVGLAVSFLQAITSMQDQALSHGVKLIAVTI 60
Query: 61 TLIISAPFIGGQISSFVTLVLS 82
+++ AP + F V
Sbjct: 61 VIVVGAPMSAAAVLRFANEVFQ 82
>gi|86157787|ref|YP_464572.1| export protein FliQ [Anaeromyxobacter dehalogenans 2CP-C]
gi|85774298|gb|ABC81135.1| export protein FliQ, family 3 [Anaeromyxobacter dehalogenans
2CP-C]
Length = 87
Score = 42.9 bits (100), Expect = 0.015, Method: Composition-based stats.
Identities = 18/86 (20%), Positives = 43/86 (50%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + R A+ + + PVL + + +G+++ LQA TQ+ + + F+P++ A
Sbjct: 1 MTPELPGALLREALLLLAAVGGPVLGALLLVGLVVGVLQAATQVNDAAVGFLPRVAAAGA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
+ + ++ ++S F+ + R+
Sbjct: 61 VIWLLGGWMMDRLSGFLAQCILRMAG 86
>gi|299822253|ref|ZP_07054139.1| flagellar biosynthetic protein FliQ [Listeria grayi DSM 20601]
gi|299815782|gb|EFI83020.1| flagellar biosynthetic protein FliQ [Listeria grayi DSM 20601]
Length = 90
Score = 42.9 bits (100), Expect = 0.015, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 52/88 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN V+E+ + ++ L+ PV + + IL+A + A+ QIQ+ +LTF+PKIIA +
Sbjct: 1 MNLTPVMEVFQKFFYSGLTIILPVSIVCLVVVILVAIIMAMMQIQDQSLTFLPKIIAFVV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
L I P++ G ++ + + ++I + +
Sbjct: 61 ALFILGPWMFGHMTDLIVSIFAKIPTMI 88
>gi|170683515|ref|YP_001742351.1| lateral flagellar export/assembly protein LfiQ [Escherichia coli
SMS-3-5]
gi|300936102|ref|ZP_07151043.1| flagellar biosynthesis protein FliQ [Escherichia coli MS 21-1]
gi|170521233|gb|ACB19411.1| lateral flagellar export/assembly protein LfiQ [Escherichia coli
SMS-3-5]
gi|300458751|gb|EFK22244.1| flagellar biosynthesis protein FliQ [Escherichia coli MS 21-1]
Length = 90
Score = 42.5 bits (99), Expect = 0.017, Method: Composition-based stats.
Identities = 17/83 (20%), Positives = 44/83 (53%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
+ +I + + ++ + ++ ++ +G+L++ QA+TQI E TL+F+P++I +
Sbjct: 2 LTVDVAADIVASGIKVVILLVSVLVVPSLLVGLLVSVFQAVTQINEQTLSFLPRLIVTLV 61
Query: 61 TLIISAPFIGGQISSFVTLVLSR 83
L + ++ Q+ + S+
Sbjct: 62 VLGVCGKWMIIQLHDLCIHLFSQ 84
>gi|221635441|ref|YP_002523317.1| flagellar biosynthetic protein FliQ [Thermomicrobium roseum DSM
5159]
gi|221157420|gb|ACM06538.1| flagellar biosynthetic protein FliQ [Thermomicrobium roseum DSM
5159]
Length = 89
Score = 42.5 bits (99), Expect = 0.017, Method: Composition-based stats.
Identities = 35/86 (40%), Positives = 60/86 (69%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEA +LE+ARAA+ T L SAP+L + + +G+L++ LQA+TQ+ E TL F+PKI+ F+
Sbjct: 1 MNEALLLELARAAITTTLLVSAPILLTILVVGLLVSVLQAVTQVNEQTLVFIPKIVITFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
L+ + ++G Q+++ T + + +
Sbjct: 61 ILLFAGSWMGRQLATLATELFLLLPA 86
>gi|19749329|gb|AAL98699.1| Y4yM [Sinorhizobium fredii]
Length = 92
Score = 42.5 bits (99), Expect = 0.017, Method: Composition-based stats.
Identities = 16/86 (18%), Positives = 40/86 (46%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + ++ + ++ + P L +++ +G+ I +QA TQIQ+ +L K++ V
Sbjct: 2 MTGSSIVSLMSQSLVVFMIWILPPLIASVIVGLTIGIIQAATQIQDESLPLTVKLLVVVA 61
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
+ + AP + + + + +
Sbjct: 62 VIGLFAPVLSAPLIELADQIFTEFPA 87
>gi|293408347|ref|ZP_06652186.1| conserved hypothetical protein [Escherichia coli B354]
gi|291471525|gb|EFF14008.1| conserved hypothetical protein [Escherichia coli B354]
gi|323191515|gb|EFZ76776.1| bacterial export protein, family 3 protein [Escherichia coli
RN587/1]
Length = 90
Score = 42.5 bits (99), Expect = 0.018, Method: Composition-based stats.
Identities = 16/83 (19%), Positives = 44/83 (53%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
+ +I + + ++ + ++ ++ +G+L++ QA+TQI E TL+F+P++I +
Sbjct: 2 LTVDVAADIVASGIKVVILLVSVLVVPSLLVGLLVSVFQAVTQINEQTLSFLPRLIVTLV 61
Query: 61 TLIISAPFIGGQISSFVTLVLSR 83
L + ++ Q+ + ++
Sbjct: 62 VLGVCGKWMIVQLHDLCIHLFTQ 84
>gi|237678816|emb|CAQ57543.1| RHCS protein [Bradyrhizobium elkanii]
Length = 91
Score = 42.2 bits (98), Expect = 0.023, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 40/86 (46%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEA +L ++ + P L +A+ G++I +QA TQ+Q+ TL K++ V
Sbjct: 1 MNEASILMHLSQSLVLFMIWVLPPLLAALISGLIIGLIQAATQLQDQTLPLTVKLLVVVA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
L +P + + + S +
Sbjct: 61 VLAGFSPVLSAPLIEQAERIFSEFPA 86
>gi|206895800|ref|YP_002246701.1| flagellar biosynthetic protein FliQ [Coprothermobacter
proteolyticus DSM 5265]
gi|206738417|gb|ACI17495.1| flagellar biosynthetic protein FliQ [Coprothermobacter
proteolyticus DSM 5265]
Length = 87
Score = 42.2 bits (98), Expect = 0.024, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 42/80 (52%)
Query: 3 EADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITL 62
+ R+++ IL PVL A+ LGI+I+ LQ LTQI + ++ FVPK + + + +
Sbjct: 2 TDFIFSWFRSSVLQILIIVGPVLLVALVLGIIISILQVLTQIHDPSVAFVPKFLVIMLLV 61
Query: 63 IISAPFIGGQISSFVTLVLS 82
+ + + F V+S
Sbjct: 62 LFFGGTVVNVMVRFFNGVVS 81
>gi|170021380|ref|YP_001726334.1| export protein FliQ [Escherichia coli ATCC 8739]
gi|188495648|ref|ZP_03002918.1| lateral flagellar FliQ family export/assembly protein
[Escherichia coli 53638]
gi|218703505|ref|YP_002411024.1| lateral flagellar export/assembly FliQ-like protein [Escherichia
coli UMN026]
gi|293403336|ref|ZP_06647427.1| conserved hypothetical protein [Escherichia coli FVEC1412]
gi|298378947|ref|ZP_06988828.1| flagellar biosynthetic protein FliQ [Escherichia coli FVEC1302]
gi|300898061|ref|ZP_07116430.1| flagellar biosynthesis protein FliQ [Escherichia coli MS 198-1]
gi|301646790|ref|ZP_07246644.1| flagellar biosynthesis protein FliQ [Escherichia coli MS 146-1]
gi|306813326|ref|ZP_07447519.1| flagellar biosynthetic protein FliQ [Escherichia coli NC101]
gi|307136837|ref|ZP_07496193.1| flagellar biosynthetic protein FliQ [Escherichia coli H736]
gi|331640693|ref|ZP_08341840.1| putative flagellar biosynthetic protein FliQ [Escherichia coli
H736]
gi|331645396|ref|ZP_08346500.1| putative flagellar biosynthetic protein FliQ [Escherichia coli
M605]
gi|59889761|emb|CAH19116.1| Lateral flagellar export/assembly protein (FliQ-like)
[Escherichia coli]
gi|169756308|gb|ACA79007.1| export protein FliQ family 3 [Escherichia coli ATCC 8739]
gi|188490847|gb|EDU65950.1| lateral flagellar FliQ family export/assembly protein
[Escherichia coli 53638]
gi|218430602|emb|CAR11468.1| Lateral flagellar export/assembly protein (FliQ-like)
[Escherichia coli UMN026]
gi|284920025|emb|CBG33081.1| lateral flagellar export/assembly protein (FliQ-like)
[Escherichia coli 042]
gi|291429189|gb|EFF02209.1| conserved hypothetical protein [Escherichia coli FVEC1412]
gi|298280060|gb|EFI21564.1| flagellar biosynthetic protein FliQ [Escherichia coli FVEC1302]
gi|300358239|gb|EFJ74109.1| flagellar biosynthesis protein FliQ [Escherichia coli MS 198-1]
gi|301075025|gb|EFK89831.1| flagellar biosynthesis protein FliQ [Escherichia coli MS 146-1]
gi|305854089|gb|EFM54528.1| flagellar biosynthetic protein FliQ [Escherichia coli NC101]
gi|315616848|gb|EFU97465.1| bacterial export protein, family 3 [Escherichia coli 3431]
gi|327254530|gb|EGE66146.1| bacterial export protein, family 3 [Escherichia coli STEC_7v]
gi|331040067|gb|EGI12275.1| putative flagellar biosynthetic protein FliQ [Escherichia coli
H736]
gi|331045558|gb|EGI17684.1| putative flagellar biosynthetic protein FliQ [Escherichia coli
M605]
Length = 90
Score = 42.2 bits (98), Expect = 0.025, Method: Composition-based stats.
Identities = 16/83 (19%), Positives = 44/83 (53%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
+ +I + + ++ + ++ ++ +G+L++ QA+TQI E TL+F+P++I +
Sbjct: 2 LTVDVAADIVASGIKVVILLVSVLVVPSLLVGLLVSVFQAVTQINEQTLSFLPRLIVTLV 61
Query: 61 TLIISAPFIGGQISSFVTLVLSR 83
L + ++ Q+ + ++
Sbjct: 62 VLGVCGKWMIIQLHDLCIHLFTQ 84
>gi|260866393|ref|YP_003232795.1| putative lateral flagellar biosynthesis protein [Escherichia coli
O111:H- str. 11128]
gi|332281370|ref|ZP_08393783.1| lateral flagellar export/assembly protein [Shigella sp. D9]
gi|257762749|dbj|BAI34244.1| predicted lateral flagellar biosynthesis protein [Escherichia
coli O111:H- str. 11128]
gi|323158014|gb|EFZ44115.1| bacterial export s, family 3 family protein [Escherichia coli
EPECa14]
gi|323171040|gb|EFZ56689.1| bacterial export protein, family 3 [Escherichia coli LT-68]
gi|323178515|gb|EFZ64093.1| bacterial export protein, family 3 [Escherichia coli 1180]
gi|323181526|gb|EFZ66946.1| bacterial export protein, family 3 [Escherichia coli 1357]
gi|332103722|gb|EGJ07068.1| lateral flagellar export/assembly protein [Shigella sp. D9]
Length = 90
Score = 41.8 bits (97), Expect = 0.032, Method: Composition-based stats.
Identities = 16/83 (19%), Positives = 44/83 (53%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
+ +I + + ++ + ++ ++ +G+L++ QA+TQI E TL+F+P++I +
Sbjct: 2 LTIDVAADIVASGIKVVILLVSVLVVPSLLVGLLVSVFQAVTQINEQTLSFLPRLIVTLV 61
Query: 61 TLIISAPFIGGQISSFVTLVLSR 83
L + ++ Q+ + ++
Sbjct: 62 VLGVCGKWMIIQLHDLCIHLFTQ 84
>gi|17549080|ref|NP_522420.1| Hrp conserved HRCS transmembrane protein [Ralstonia solanacearum
GMI1000]
gi|83747861|ref|ZP_00944894.1| HrcS [Ralstonia solanacearum UW551]
gi|207724579|ref|YP_002254976.1| hrp protein hrcs [Ralstonia solanacearum MolK2]
gi|207739215|ref|YP_002257608.1| hrp protein hrcs [Ralstonia solanacearum IPO1609]
gi|300693805|ref|YP_003749778.1| type III secretion protein hrcs [Ralstonia solanacearum PSI07]
gi|300697460|ref|YP_003748121.1| type III secretion protein HrcS [Ralstonia solanacearum CFBP2957]
gi|6066700|emb|CAB58246.1| HrpU protein [Ralstonia solanacearum]
gi|17431331|emb|CAD18010.1| hrp conserved hrcs transmembrane protein [Ralstonia solanacearum
GMI1000]
gi|83725508|gb|EAP72653.1| HrcS [Ralstonia solanacearum UW551]
gi|206589801|emb|CAQ36762.1| hrp conserved protein hrcs [Ralstonia solanacearum MolK2]
gi|206592588|emb|CAQ59494.1| hrp conserved protein hrcs [Ralstonia solanacearum IPO1609]
gi|219566949|dbj|BAH04980.1| Hrp conserved transmembrane protein [Ralstonia solanacearum]
gi|299069225|emb|CBJ40485.1| Type III secretion protein HrcS [Ralstonia solanacearum CMR15]
gi|299074184|emb|CBJ53729.1| Type III secretion protein HrcS [Ralstonia solanacearum CFBP2957]
gi|299075842|emb|CBJ35151.1| Type III secretion protein HrcS [Ralstonia solanacearum PSI07]
gi|1097279|prf||2113360E hrpU gene
Length = 86
Score = 41.4 bits (96), Expect = 0.038, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 45/82 (54%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ ++ + A+ L S P + A G+LI+FLQA+T +Q+ +++ K+I V +
Sbjct: 1 MDYDNITRLTSTALLLCLLVSLPAVGVAAIAGLLISFLQAITSLQDSSISHGLKLIIVSL 60
Query: 61 TLIISAPFIGGQISSFVTLVLS 82
++++AP+ I F ++
Sbjct: 61 VIVVAAPWGAAAILQFANSIMQ 82
>gi|331671781|ref|ZP_08372577.1| putative flagellar biosynthetic protein FliQ [Escherichia coli
TA280]
gi|331070770|gb|EGI42129.1| putative flagellar biosynthetic protein FliQ [Escherichia coli
TA280]
Length = 90
Score = 41.4 bits (96), Expect = 0.038, Method: Composition-based stats.
Identities = 15/83 (18%), Positives = 44/83 (53%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
+ +I + + ++ + ++ ++ +G+L++ Q++TQI E TL+F+P++I +
Sbjct: 2 LTVDVAADIVASGIKVVILLVSVLVVPSLLVGLLVSVFQSVTQINEQTLSFLPRLIVTLV 61
Query: 61 TLIISAPFIGGQISSFVTLVLSR 83
L + ++ Q+ + ++
Sbjct: 62 VLGVCGKWMIIQLHDLCIHLFTQ 84
>gi|16802719|ref|NP_464204.1| flagellar biosynthesis protein FliQ [Listeria monocytogenes
EGD-e]
gi|46906928|ref|YP_013317.1| flagellar biosynthesis protein FliQ [Listeria monocytogenes
serotype 4b str. F2365]
gi|47091640|ref|ZP_00229436.1| flagellar biosynthetic protein FliQ [Listeria monocytogenes str.
4b H7858]
gi|47095242|ref|ZP_00232853.1| flagellar biosynthetic protein FliQ [Listeria monocytogenes str.
1/2a F6854]
gi|116872066|ref|YP_848847.1| flagellar biosynthesis protein FliQ [Listeria welshimeri serovar
6b str. SLCC5334]
gi|224498760|ref|ZP_03667109.1| flagellar biosynthesis protein FliQ [Listeria monocytogenes
Finland 1988]
gi|224502018|ref|ZP_03670325.1| flagellar biosynthesis protein FliQ [Listeria monocytogenes FSL
R2-561]
gi|226223308|ref|YP_002757415.1| flagellar biosynthesis protein FliQ [Listeria monocytogenes
Clip81459]
gi|254824043|ref|ZP_05229044.1| flagellar biosynthetic protein FliQ [Listeria monocytogenes FSL
J1-194]
gi|254829334|ref|ZP_05234021.1| flagellar biosynthetic protein FliQ [Listeria monocytogenes FSL
N3-165]
gi|254853118|ref|ZP_05242466.1| flagellar biosynthetic protein FliQ [Listeria monocytogenes FSL
R2-503]
gi|254900087|ref|ZP_05260011.1| flagellar biosynthesis protein FliQ [Listeria monocytogenes
J0161]
gi|254911360|ref|ZP_05261372.1| flagellar biosynthesis protein FliQ [Listeria monocytogenes
J2818]
gi|254932043|ref|ZP_05265402.1| flagellar biosynthetic protein FliQ [Listeria monocytogenes
HPB2262]
gi|254935687|ref|ZP_05267384.1| flagellar biosynthetic protein FliQ [Listeria monocytogenes
F6900]
gi|254992442|ref|ZP_05274632.1| flagellar biosynthesis protein FliQ [Listeria monocytogenes FSL
J2-064]
gi|255028551|ref|ZP_05300502.1| flagellar biosynthesis protein FliQ [Listeria monocytogenes LO28]
gi|255521626|ref|ZP_05388863.1| flagellar biosynthesis protein FliQ [Listeria monocytogenes FSL
J1-175]
gi|284801007|ref|YP_003412872.1| flagellar biosynthesis protein FliQ [Listeria monocytogenes
08-5578]
gi|284994149|ref|YP_003415917.1| flagellar biosynthesis protein FliQ [Listeria monocytogenes
08-5923]
gi|300764488|ref|ZP_07074481.1| flagellar biosynthetic protein FliQ [Listeria monocytogenes FSL
N1-017]
gi|16410066|emb|CAC98755.1| lmo0677 [Listeria monocytogenes EGD-e]
gi|46880194|gb|AAT03494.1| flagellar biosynthetic protein FliQ [Listeria monocytogenes
serotype 4b str. F2365]
gi|47016313|gb|EAL07235.1| flagellar biosynthetic protein FliQ [Listeria monocytogenes str.
1/2a F6854]
gi|47019959|gb|EAL10696.1| flagellar biosynthetic protein FliQ [Listeria monocytogenes str.
4b H7858]
gi|116740944|emb|CAK20064.1| flagellar biosynthetic protein FliQ, putative [Listeria
welshimeri serovar 6b str. SLCC5334]
gi|225875770|emb|CAS04473.1| Putative flagellar biosynthesis protein FliQ [Listeria
monocytogenes serotype 4b str. CLIP 80459]
gi|258601746|gb|EEW15071.1| flagellar biosynthetic protein FliQ [Listeria monocytogenes FSL
N3-165]
gi|258606469|gb|EEW19077.1| flagellar biosynthetic protein FliQ [Listeria monocytogenes FSL
R2-503]
gi|258608269|gb|EEW20877.1| flagellar biosynthetic protein FliQ [Listeria monocytogenes
F6900]
gi|284056569|gb|ADB67510.1| flagellar biosynthesis protein FliQ [Listeria monocytogenes
08-5578]
gi|284059616|gb|ADB70555.1| flagellar biosynthesis protein FliQ [Listeria monocytogenes
08-5923]
gi|293583596|gb|EFF95628.1| flagellar biosynthetic protein FliQ [Listeria monocytogenes
HPB2262]
gi|293589296|gb|EFF97630.1| flagellar biosynthesis protein FliQ [Listeria monocytogenes
J2818]
gi|293593272|gb|EFG01033.1| flagellar biosynthetic protein FliQ [Listeria monocytogenes FSL
J1-194]
gi|300514842|gb|EFK41896.1| flagellar biosynthetic protein FliQ [Listeria monocytogenes FSL
N1-017]
gi|328467246|gb|EGF38326.1| flagellar biosynthesis protein FliQ [Listeria monocytogenes 1816]
gi|328475642|gb|EGF46391.1| flagellar biosynthesis protein FliQ [Listeria monocytogenes 220]
gi|332311102|gb|EGJ24197.1| Export protein FliQ family 3 [Listeria monocytogenes str. Scott
A]
Length = 90
Score = 41.4 bits (96), Expect = 0.041, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 47/85 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN + +I + ++ L+ PV + + I++A L A+ QIQ+ +LTF+PKI+A +
Sbjct: 1 MNLTPITQIFQDFFYSGLALILPVSLICIVVVIVVAILMAMMQIQDQSLTFLPKIVAFVV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
L I P++ ++ + S++
Sbjct: 61 ALFILGPWMFEHMTDLFVGIFSKLP 85
>gi|255027835|ref|ZP_05299821.1| flagellar biosynthesis protein FliQ [Listeria monocytogenes FSL
J2-003]
Length = 87
Score = 41.4 bits (96), Expect = 0.043, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 47/85 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN + +I + ++ L+ PV + + I++A L A+ QIQ+ +LTF+PKI+A +
Sbjct: 1 MNLTPITQIFQDFFYSGLALILPVSLICIVVVIVVAILMAMMQIQDQSLTFLPKIVAFVV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
L I P++ ++ + S++
Sbjct: 61 ALFILGPWMFEHMTDLFVGIFSKLP 85
>gi|220917691|ref|YP_002492995.1| export protein FliQ family 3 [Anaeromyxobacter dehalogenans
2CP-1]
gi|219955545|gb|ACL65929.1| export protein FliQ family 3 [Anaeromyxobacter dehalogenans
2CP-1]
Length = 83
Score = 41.4 bits (96), Expect = 0.043, Method: Composition-based stats.
Identities = 15/67 (22%), Positives = 36/67 (53%)
Query: 20 SSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTL 79
PVL + + +G+++ LQA TQ+ + + F+P+ A + + + ++ ++S F+
Sbjct: 16 VGGPVLGALLLVGLVVGVLQAATQVNDAAVGFLPRAAAAGVVIWLLGGWMMDRLSGFLAQ 75
Query: 80 VLSRIQS 86
+ R+
Sbjct: 76 CIVRMAG 82
>gi|197122899|ref|YP_002134850.1| export protein FliQ family 3 [Anaeromyxobacter sp. K]
gi|196172748|gb|ACG73721.1| export protein FliQ family 3 [Anaeromyxobacter sp. K]
Length = 83
Score = 41.4 bits (96), Expect = 0.045, Method: Composition-based stats.
Identities = 15/67 (22%), Positives = 36/67 (53%)
Query: 20 SSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTL 79
PVL + + +G+++ LQA TQ+ + + F+P+ A + + + ++ ++S F+
Sbjct: 16 VGGPVLGALLLVGLVVGVLQAATQVNDAAVGFLPRAAAAGVVIWLLGGWMMDRLSGFLAQ 75
Query: 80 VLSRIQS 86
+ R+
Sbjct: 76 CILRMAG 82
>gi|16799760|ref|NP_470028.1| flagellar biosynthesis protein FliQ [Listeria innocua Clip11262]
gi|217965225|ref|YP_002350903.1| flagellar biosynthesis protein [Listeria monocytogenes HCC23]
gi|254830332|ref|ZP_05234987.1| flagellar biosynthesis protein FliQ [Listeria monocytogenes
10403S]
gi|289433955|ref|YP_003463827.1| flagellar biosynthetic protein FliQ [Listeria seeligeri serovar
1/2b str. SLCC3954]
gi|290892877|ref|ZP_06555868.1| flagellar biosynthesis protein FliQ [Listeria monocytogenes FSL
J2-071]
gi|315281328|ref|ZP_07869976.1| flagellar biosynthesis protein FliQ [Listeria marthii FSL S4-120]
gi|315301907|ref|ZP_07872920.1| flagellar biosynthesis protein FliQ [Listeria ivanovii FSL
F6-596]
gi|16413137|emb|CAC95917.1| lin0685 [Listeria innocua Clip11262]
gi|217334495|gb|ACK40289.1| flagellar biosynthesis protein [Listeria monocytogenes HCC23]
gi|289170199|emb|CBH26739.1| flagellar biosynthetic protein FliQ [Listeria seeligeri serovar
1/2b str. SLCC3954]
gi|290557689|gb|EFD91212.1| flagellar biosynthesis protein FliQ [Listeria monocytogenes FSL
J2-071]
gi|307570216|emb|CAR83395.1| flagellar biosynthetic protein [Listeria monocytogenes L99]
gi|313615026|gb|EFR88522.1| flagellar biosynthesis protein FliQ [Listeria marthii FSL S4-120]
gi|313620097|gb|EFR91602.1| flagellar biosynthesis protein FliQ [Listeria innocua FSL S4-378]
gi|313624919|gb|EFR94827.1| flagellar biosynthesis protein FliQ [Listeria innocua FSL J1-023]
gi|313629723|gb|EFR97843.1| flagellar biosynthesis protein FliQ [Listeria ivanovii FSL
F6-596]
gi|313634414|gb|EFS01001.1| flagellar biosynthesis protein FliQ [Listeria seeligeri FSL
N1-067]
gi|313639092|gb|EFS04068.1| flagellar biosynthesis protein FliQ [Listeria seeligeri FSL
S4-171]
Length = 90
Score = 41.4 bits (96), Expect = 0.045, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 47/85 (55%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN + +I + ++ L+ PV + + I++A L A+ QIQ+ +LTF+PKIIA +
Sbjct: 1 MNLTPITQIFQDFFYSGLALILPVSLICIVVVIVVAILMAMMQIQDQSLTFLPKIIAFVV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
L I P++ ++ + S++
Sbjct: 61 ALFILGPWMFEHMTDLFVGIFSKLP 85
>gi|73532642|dbj|BAE19879.1| type III secretion apparatus [Edwardsiella tarda]
Length = 67
Score = 41.4 bits (96), Expect = 0.046, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 44/67 (65%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +A ++++A +W +L S PV+ A +G+L+ +QALTQIQ+ T++F K++A +
Sbjct: 1 MGKAQLVQLASELLWLVLILSLPVVLVASLVGVLVGLVQALTQIQDQTVSFAIKLVAASV 60
Query: 61 TLIISAP 67
TL ++
Sbjct: 61 TLALTYH 67
>gi|171316781|ref|ZP_02905992.1| type III secretion protein, HrpO family [Burkholderia ambifaria
MEX-5]
gi|171098039|gb|EDT42855.1| type III secretion protein, HrpO family [Burkholderia ambifaria
MEX-5]
Length = 87
Score = 41.0 bits (95), Expect = 0.053, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 42/83 (50%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ ++ M + S P++ A +G+ +FLQA+T IQ+ TL+ K+IA +
Sbjct: 1 MDMNTLVGFTTRGMLLCMYVSLPIVAVAALVGLATSFLQAVTSIQDQTLSHAVKLIAATV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSR 83
++I+AP I T ++
Sbjct: 61 AVMITAPASASAILRLATEIMQM 83
>gi|1648937|gb|AAB17685.1| putative [Sinorhizobium fredii]
gi|52631922|gb|AAU85372.1| RhcS [Sinorhizobium fredii]
Length = 92
Score = 41.0 bits (95), Expect = 0.058, Method: Composition-based stats.
Identities = 15/85 (17%), Positives = 39/85 (45%)
Query: 2 NEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFIT 61
+ ++ + ++ + P L +++ +G+ I +QA TQIQ+ +L K++ V
Sbjct: 3 TGSSIVSLMSQSLVVFMIWILPPLIASVIVGLTIGIIQAATQIQDESLPLTVKLLVVVAV 62
Query: 62 LIISAPFIGGQISSFVTLVLSRIQS 86
+ + AP + + + + +
Sbjct: 63 IGLFAPVLSAPLIELADQIFTEFPA 87
>gi|150020820|ref|YP_001306174.1| flagellar biosynthetic protein FliQ [Thermosipho melanesiensis
BI429]
gi|149793341|gb|ABR30789.1| flagellar biosynthetic protein FliQ [Thermosipho melanesiensis
BI429]
Length = 88
Score = 40.6 bits (94), Expect = 0.065, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 45/83 (54%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M L++ + T+L+ P L ++ +G+LI+ QA TQI E TLTF P+II +F+
Sbjct: 1 MTIEVFLDVFGLGIKTLLTVILPPLLISLLVGLLISIFQAATQINEQTLTFAPRIIVLFL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSR 83
TL+ ++ + +L +
Sbjct: 61 TLLFLGGWMIQTLVDLARNILEK 83
>gi|256020208|ref|ZP_05434073.1| Lateral flagellar export/assembly protein (FliQ-like) [Shigella
sp. D9]
gi|260853447|ref|YP_003227338.1| putative lateral flagellar biosynthesis protein [Escherichia coli
O26:H11 str. 11368]
gi|307315217|ref|ZP_07594796.1| export protein FliQ family 3 [Escherichia coli W]
gi|257752096|dbj|BAI23598.1| predicted lateral flagellar biosynthesis protein [Escherichia
coli O26:H11 str. 11368]
gi|306905398|gb|EFN35935.1| export protein FliQ family 3 [Escherichia coli W]
gi|315059468|gb|ADT73795.1| Lateral flagellar export/assembly protein [Escherichia coli W]
gi|323379974|gb|ADX52242.1| export protein FliQ family 3 [Escherichia coli KO11]
Length = 91
Score = 40.6 bits (94), Expect = 0.066, Method: Composition-based stats.
Identities = 16/83 (19%), Positives = 44/83 (53%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
+ +I + + ++ + ++ ++ +G+L++ QA+TQI E TL+F+P++I +
Sbjct: 3 LTIDVAADIVASGIKVVILLVSVLVVPSLLVGLLVSVFQAVTQINEQTLSFLPRLIVTLV 62
Query: 61 TLIISAPFIGGQISSFVTLVLSR 83
L + ++ Q+ + ++
Sbjct: 63 VLGVCGKWMIIQLHDLCIHLFTQ 85
>gi|222833216|gb|EEE71693.1| predicted protein [Populus trichocarpa]
Length = 314
Score = 40.6 bits (94), Expect = 0.068, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 22 APVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAP 67
PVL + +G+ ++ QA+TQ+ E TL FVPK+I+ + I+
Sbjct: 1 MPVLGVVLAVGLAVSVFQAVTQVHEATLAFVPKLISAVLVFAIAGG 46
>gi|331666526|ref|ZP_08367400.1| putative flagellar biosynthetic protein FliQ [Escherichia coli
TA271]
gi|331065750|gb|EGI37634.1| putative flagellar biosynthetic protein FliQ [Escherichia coli
TA271]
Length = 91
Score = 40.6 bits (94), Expect = 0.070, Method: Composition-based stats.
Identities = 16/83 (19%), Positives = 43/83 (51%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
+ +I + ++ + ++ ++ +G+L++ QA+TQI E TL+F+P++I +
Sbjct: 3 LTIDVAADIVAGGIKVVILLVSVLVVPSLLVGLLVSVFQAVTQINEQTLSFLPRLIVTLV 62
Query: 61 TLIISAPFIGGQISSFVTLVLSR 83
L + ++ Q+ + ++
Sbjct: 63 VLGVCGKWMIIQLHDLCIHLFTQ 85
>gi|127512308|ref|YP_001093505.1| flagellar biosynthetic protein FliQ [Shewanella loihica PV-4]
gi|126637603|gb|ABO23246.1| flagellar biosynthetic protein FliQ [Shewanella loihica PV-4]
Length = 89
Score = 40.6 bits (94), Expect = 0.077, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 45/85 (52%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +++I R A+ I++ + ++ + +G+++A QA T I E TL+F+P+++
Sbjct: 1 MTPEALIDIFREALSVIVTIVSMIIVPGLVVGLVVAVFQAATSINEQTLSFLPRLLTTLF 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
L+I + + F +++ I
Sbjct: 61 ALMILGHLLVQTMMEFFLQMVNLIP 85
>gi|254463558|ref|ZP_05076974.1| flagellar biosynthetic protein FliQ [Rhodobacterales bacterium
HTCC2083]
gi|206680147|gb|EDZ44634.1| flagellar biosynthetic protein FliQ [Rhodobacteraceae bacterium
HTCC2083]
Length = 71
Score = 40.2 bits (93), Expect = 0.096, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 39/62 (62%)
Query: 18 LSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFV 77
++ S P+L +A+ G+ + LQALT +QE+TLTFVPK+ A+ + ++ F+ + ++
Sbjct: 1 MAMSIPILSAALIAGVSVGLLQALTSVQEMTLTFVPKLCAIVVVFWMTMNFMTQTLVTYF 60
Query: 78 TL 79
Sbjct: 61 HT 62
>gi|330879021|gb|EGH13170.1| type III secretion component [Pseudomonas syringae pv. glycinea
str. race 4]
Length = 67
Score = 40.2 bits (93), Expect = 0.10, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 40/67 (59%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M + L + A+ T+L SAP L A+ +G+ + LQALTQIQ+ TL V K++AV +
Sbjct: 1 MGQDVFLSLMNKALMTVLLLSAPALVVAIVVGLSVGLLQALTQIQDQTLPQVVKLVAVLL 60
Query: 61 TLIISAP 67
++ P
Sbjct: 61 VIVFVGP 67
>gi|13475306|ref|NP_106870.1| hypothetical protein msr8694 [Mesorhizobium loti MAFF303099]
gi|14026057|dbj|BAB52656.1| msr8694 [Mesorhizobium loti MAFF303099]
Length = 82
Score = 39.8 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 15/77 (19%), Positives = 36/77 (46%)
Query: 10 ARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFI 69
++ + P L +++ +G++I +QA TQIQ+ +L K++ V + + AP +
Sbjct: 1 MSQSLVVFMIWILPPLIASVVVGLVIGIIQAATQIQDESLPLTVKLLVVVAVIGLFAPVL 60
Query: 70 GGQISSFVTLVLSRIQS 86
+ + + +
Sbjct: 61 SAPLIELTDQIFTEFPA 77
>gi|320103854|ref|YP_004179445.1| export protein FliQ family 3 [Isosphaera pallida ATCC 43644]
gi|319751136|gb|ADV62896.1| export protein FliQ family 3 [Isosphaera pallida ATCC 43644]
Length = 89
Score = 39.5 bits (91), Expect = 0.15, Method: Composition-based stats.
Identities = 16/88 (18%), Positives = 41/88 (46%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M+ + R A+ P+L + +G+++ +Q +TQ+ + + VP+++A+
Sbjct: 1 MDATTATQWTRDAILMAFWLGGPLLTVGLVVGLVVGAMQTMTQLNDPVVGLVPRLLAIAA 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
+ AP++ +F ++ + L
Sbjct: 61 AIFALAPWMAATWGTFAARLIESLPDYL 88
>gi|194292011|ref|YP_002007918.1| scts: non flagellar t3S system conserved transmembrane protein.
belongs to the fliq/mopd/spaq family. [Cupriavidus
taiwanensis LMG 19424]
gi|193225915|emb|CAQ71862.1| SctS: non flagellar T3S system conserved transmembrane protein.
Belongs to the fliQ/mopD/spaQ family [Cupriavidus
taiwanensis LMG 19424]
Length = 88
Score = 39.5 bits (91), Expect = 0.15, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 48/82 (58%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M +L+I R A+ +L + PV+ + +++A LQA+TQIQ+ ++ ++IAV +
Sbjct: 1 MGADTILDITRQALLVVLWVTLPVVLIGTLVALVVAVLQAVTQIQDQSIGTSARLIAVLV 60
Query: 61 TLIISAPFIGGQISSFVTLVLS 82
+L++ ++GG++ F L
Sbjct: 61 SLVLLGGWLGGEVMRFAQRALQ 82
>gi|313610167|gb|EFR85469.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL
F2-208]
Length = 83
Score = 39.5 bits (91), Expect = 0.15, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 44/78 (56%)
Query: 8 EIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAP 67
+I + ++ L+ PV + + I++A L A+ QIQ+ +LTF+PKIIA + L I P
Sbjct: 1 QIFQDFFYSGLALILPVSLICIVVVIVVAILMAMMQIQDQSLTFLPKIIAFVVALFILGP 60
Query: 68 FIGGQISSFVTLVLSRIQ 85
++ ++ + S++
Sbjct: 61 WMFEHMTDLFVGIFSKLP 78
>gi|330947802|gb|EGH48224.1| flagellar biosynthesis protein FliQ [Pseudomonas syringae pv.
pisi str. 1704B]
Length = 54
Score = 39.5 bits (91), Expect = 0.17, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 32/53 (60%)
Query: 36 AFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSRIQSSL 88
A QA TQI E TL+F+P+++ + ITLI+ P++ ++ + + I + +
Sbjct: 1 AMFQAATQINEQTLSFLPRLLVMLITLIVIGPWLLKIFMEYMLSLYTSIPTLI 53
>gi|110632473|ref|YP_672681.1| export protein FliQ [Mesorhizobium sp. BNC1]
gi|110283457|gb|ABG61516.1| export protein FliQ, family 3 [Chelativorans sp. BNC1]
Length = 79
Score = 39.5 bits (91), Expect = 0.18, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 42/76 (55%)
Query: 9 IARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPF 68
+AR A+ + S P++ +A +G+++A +Q L Q+QE T+ F K+ AV + L S
Sbjct: 1 MARNAIVLVFYLSMPLIIAATVVGLMVAIVQTLIQLQEQTVAFAAKLTAVVLILSFSIGG 60
Query: 69 IGGQISSFVTLVLSRI 84
+ + S V++ I
Sbjct: 61 MSSHLLSLFEQVMNEI 76
>gi|21230682|ref|NP_636599.1| HrcS protein [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66769323|ref|YP_244085.1| HrcS protein [Xanthomonas campestris pv. campestris str. 8004]
gi|21112270|gb|AAM40523.1| HrcS protein [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66574655|gb|AAY50065.1| HrcS protein [Xanthomonas campestris pv. campestris str. 8004]
Length = 80
Score = 39.5 bits (91), Expect = 0.18, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 40/76 (52%)
Query: 7 LEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISA 66
+ A+ L S PV+ A G+LIAF+QA+ +Q+ +++F K++ V + ++A
Sbjct: 1 MRFTSEALLLCLKVSLPVVGVAAVAGLLIAFIQAVMSLQDASISFALKLVVVVAAIAVTA 60
Query: 67 PFIGGQISSFVTLVLS 82
P+ I F ++
Sbjct: 61 PWGASAIMQFGQALMQ 76
>gi|228952150|ref|ZP_04114242.1| Flagellar biosynthesis protein fliQ [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|228958048|ref|ZP_04119783.1| Flagellar biosynthesis protein fliQ [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|228801565|gb|EEM48447.1| Flagellar biosynthesis protein fliQ [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|228807504|gb|EEM54031.1| Flagellar biosynthesis protein fliQ [Bacillus thuringiensis
serovar kurstaki str. T03a001]
Length = 73
Score = 39.1 bits (90), Expect = 0.24, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 43/70 (61%)
Query: 19 SSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVT 78
PV +M + I+IA + A+ QIQE TLTF+PK+ ++ + +II P++ ++++ +
Sbjct: 1 MILMPVAGVSMIVVIIIAVIMAMMQIQEQTLTFLPKMASIVLVIIILGPWMFQELTTLIL 60
Query: 79 LVLSRIQSSL 88
+ +I S L
Sbjct: 61 DLFDKIPSLL 70
>gi|218508019|ref|ZP_03505897.1| hypothetical protein RetlB5_10637 [Rhizobium etli Brasil 5]
gi|218512615|ref|ZP_03509455.1| hypothetical protein Retl8_02446 [Rhizobium etli 8C-3]
gi|218674846|ref|ZP_03524515.1| hypothetical protein RetlG_27065 [Rhizobium etli GR56]
gi|327192842|gb|EGE59768.1| hypothetical protein RHECNPAF_190019 [Rhizobium etli CNPAF512]
Length = 89
Score = 38.3 bits (88), Expect = 0.35, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 42/88 (47%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M E V ++ + + P+L A LG++IA QA TQIQE T+ + KI + I
Sbjct: 1 MGEDQVAAEIGMSVMATFALAGPILGLAALLGLIIAIFQAATQIQEQTIAQIVKIFVISI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
TL++ + + +L+ + +
Sbjct: 61 TLLLFGRVLATPLIEHSVHILNDFPTMV 88
>gi|255018674|ref|ZP_05290800.1| flagellar biosynthesis protein FliQ [Listeria monocytogenes FSL
F2-515]
Length = 49
Score = 36.0 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 42 TQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSRIQ 85
QIQ+ +LTF+PKI+A + L I P++ ++ + S++
Sbjct: 1 MQIQDQSLTFLPKIVAFVVALFILGPWMFEHMTDLFVGIFSKLP 44
>gi|229132595|ref|ZP_04261443.1| Flagellar biosynthesis protein fliQ [Bacillus cereus BDRD-ST196]
gi|228650827|gb|EEL06814.1| Flagellar biosynthesis protein fliQ [Bacillus cereus BDRD-ST196]
Length = 73
Score = 34.8 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 42/70 (60%)
Query: 19 SSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVT 78
P+ +M + I+IA + A+ QIQE TLTF+PK+ ++ + +II P++ +++ +
Sbjct: 1 MILMPIAVVSMIVVIIIAVIMAMMQIQEQTLTFLPKMASIVLVIIILGPWMFQELTMLIL 60
Query: 79 LVLSRIQSSL 88
+ +I S L
Sbjct: 61 DLFDKIPSLL 70
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.325 0.155 0.434
Lambda K H
0.267 0.0466 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,465,730,432
Number of Sequences: 14124377
Number of extensions: 49277677
Number of successful extensions: 354613
Number of sequences better than 10.0: 1621
Number of HSP's better than 10.0 without gapping: 2300
Number of HSP's successfully gapped in prelim test: 454
Number of HSP's that attempted gapping in prelim test: 352031
Number of HSP's gapped (non-prelim): 2853
length of query: 88
length of database: 4,842,793,630
effective HSP length: 58
effective length of query: 30
effective length of database: 4,023,579,764
effective search space: 120707392920
effective search space used: 120707392920
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.4 bits)
S2: 76 (33.7 bits)