RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780519|ref|YP_003064932.1| flagellar biosynthesis protein
FliQ [Candidatus Liberibacter asiaticus str. psy62]
(88 letters)
>gnl|CDD|180349 PRK06010, fliQ, flagellar biosynthesis protein FliQ; Reviewed.
Length = 88
Score = 110 bits (276), Expect = 1e-25
Identities = 50/88 (56%), Positives = 68/88 (77%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNEAD L+I R A+WT+L +S P + +AM +G+ IA QALTQIQE+TLTFVPKI+A+F+
Sbjct: 1 MNEADALDIVRDAIWTVLVASGPAVLAAMVVGVAIALFQALTQIQEMTLTFVPKIVAIFV 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
TL+++ PF+G QIS+F L+ SRI
Sbjct: 61 TLLLTLPFMGAQISAFTLLIYSRIAGGF 88
>gnl|CDD|139219 PRK12781, fliQ, flagellar biosynthesis protein FliQ; Reviewed.
Length = 88
Score = 88.7 bits (220), Expect = 3e-19
Identities = 48/86 (55%), Positives = 64/86 (74%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MNE D LE+ RAA+WTI+ +S P + +AM +GI IA LQALTQIQEVTLTFVPKI+ + I
Sbjct: 1 MNERDALELVRAAIWTIIVASGPAVGAAMLVGIAIALLQALTQIQEVTLTFVPKIVVILI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86
+ ++ F+G QI +F +V RI+S
Sbjct: 61 VMAVTGSFVGAQIYAFTEMVYGRIES 86
>gnl|CDD|130469 TIGR01402, fliQ, flagellar biosynthetic protein FliQ. This model
describes FliQ, a protein involved in biosynthesis of
bacterial flagella. A related family of proteins,
excluded from this model, participates in bacterial
type III protein secretion systems.
Length = 88
Score = 71.5 bits (176), Expect = 5e-14
Identities = 36/85 (42%), Positives = 54/85 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M E VL++ R A+W L SAPVL A+ +G++I+ QA TQIQE TL+F+PKIIA+ +
Sbjct: 1 MTEETVLDLGREAIWLTLLLSAPVLLVALVVGLVISIFQAATQIQEQTLSFIPKIIAILL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85
L + P++ ++ F + RI
Sbjct: 61 ALALLGPWMLTKLLDFTREIFQRIP 85
>gnl|CDD|180210 PRK05700, fliQ, flagellar biosynthesis protein FliQ; Validated.
Length = 89
Score = 67.6 bits (166), Expect = 6e-13
Identities = 32/84 (38%), Positives = 53/84 (63%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
M V+++ R AM L +AP+L A+ +G++++ QA TQI E TL+F+PKI+AV +
Sbjct: 1 MTPESVMDLFREAMKVALMLAAPLLLVALVVGLVVSIFQAATQINEQTLSFIPKILAVLL 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
TLII+ P++ + + + S I
Sbjct: 61 TLIIAGPWMLNTLLDYTRTLFSNI 84
>gnl|CDD|185248 PRK15350, PRK15350, type III secretion system protein SsaS;
Provisional.
Length = 88
Score = 53.5 bits (128), Expect = 1e-08
Identities = 29/84 (34%), Positives = 58/84 (69%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
MN++++ + +W +L +S PV+ A +G++++ +QALTQIQ+ TL F+ K++A+ I
Sbjct: 1 MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI 60
Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84
TL++S P++ G + ++ ++ RI
Sbjct: 61 TLMVSYPWLSGILLNYTRQIMLRI 84
>gnl|CDD|130470 TIGR01403, fliQ_rel_III, type III secretion protein, HrpO family.
This model represents one of several families of
proteins related to bacterial flagellar biosynthesis
proteins and involved in bacterial type III protein
secretion systems. This family is homologous to, but
distinguished from, flagellar biosynthetic protein
FliQ. This model may not identify all type III
secretion system FliQ homologs.
Length = 81
Score = 53.1 bits (128), Expect = 1e-08
Identities = 31/80 (38%), Positives = 54/80 (67%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
D++++ A+ +L S P + A +G+L++ LQALTQ+Q+ TL F K+IAVFITL++
Sbjct: 1 DIVQLTNQALLLVLILSLPPVLVAAIVGLLVSLLQALTQLQDQTLPFAIKLIAVFITLML 60
Query: 65 SAPFIGGQISSFVTLVLSRI 84
+A ++G +I +F + + I
Sbjct: 61 TAGWLGAEILNFANQIFTMI 80
>gnl|CDD|185233 PRK15333, PRK15333, type III secretion system protein SpaQ;
Provisional.
Length = 86
Score = 32.7 bits (74), Expect = 0.022
Identities = 20/72 (27%), Positives = 38/72 (52%)
Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64
D++ A++ +L S A +G+L+ Q +TQ+QE TL F K++ V + L +
Sbjct: 3 DLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFL 62
Query: 65 SAPFIGGQISSF 76
+ + G + S+
Sbjct: 63 LSGWYGEVLLSY 74
>gnl|CDD|178775 PLN03237, PLN03237, DNA topoisomerase 2; Provisional.
Length = 1465
Score = 31.0 bits (70), Expect = 0.069
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTL 79
G+LI F+ + +L VP + FIT I+ A G ++ SF ++
Sbjct: 545 GLLINFIHSFWP----SLLKVPSFLVEFITPIVKATRRGKKVLSFYSM 588
>gnl|CDD|162131 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein.
Length = 1394
Score = 27.8 bits (62), Expect = 0.61
Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 17 ILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSF 76
+ S +F+A+F+G F + T +Q + ++ AVF+ ++ P I + F
Sbjct: 1098 LYSKFFLTIFAALFIGF--TFFKVGTSLQGLQ----NQMFAVFMATVLFNPLIQQYLPPF 1151
Query: 77 VTL 79
V
Sbjct: 1152 VAQ 1154
>gnl|CDD|180212 PRK05702, flhB, flagellar biosynthesis protein FlhB; Reviewed.
Length = 359
Score = 26.3 bits (59), Expect = 1.9
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 7/57 (12%)
Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIA 57
+ DVL + + L + P+L + +L LQ L F PK +
Sbjct: 73 FDPNDVLSLFLLLLLEALLALLPILLLLVLAALLAPVLQ-------GGLLFSPKALK 122
>gnl|CDD|167418 PRK02726, PRK02726, molybdopterin-guanine dinucleotide
biosynthesis protein A; Provisional.
Length = 200
Score = 25.0 bits (55), Expect = 4.7
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 32 GILIAFLQALTQIQ 45
G L+AF Q L QI+
Sbjct: 79 GPLVAFAQGLPQIK 92
>gnl|CDD|180519 PRK06298, PRK06298, type III secretion system protein; Validated.
Length = 356
Score = 24.8 bits (54), Expect = 4.8
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 11 RAAMWTILSSSAPVLFSAMFLGILIAFL 38
+ + IL++S P+L + F+G+L+ FL
Sbjct: 77 KNCLILILTASLPLLGAVAFVGVLVGFL 104
>gnl|CDD|161839 TIGR00361, ComEC_Rec2, DNA internalization-related competence
protein ComEC/Rec2. The role for this protein in
species that are not naturally transformable is unknown.
Length = 662
Score = 24.9 bits (54), Expect = 4.9
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 34 LIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLV 80
LI+F + + T VP I+A + L +S F Q S F L+
Sbjct: 321 LISFPANMLAVPFYTFCIVPLILAAVLLLSLSGSFGRLQGSWFDLLI 367
>gnl|CDD|178105 PLN02487, PLN02487, zeta-carotene desaturase.
Length = 569
Score = 24.8 bits (54), Expect = 5.9
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 65 SAPFIGGQISSFV 77
S PFIGG++ SFV
Sbjct: 106 SRPFIGGKVGSFV 118
>gnl|CDD|180034 PRK05352, PRK05352, Na(+)-translocating NADH-quinone reductase
subunit A; Provisional.
Length = 448
Score = 24.4 bits (54), Expect = 6.6
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 11/42 (26%)
Query: 52 VPKIIAVFITLIISAPF-------IGGQISSFVT--LVLSRI 84
P+ A+F+T + + P I Q +F VLSR+
Sbjct: 146 TPR--AIFVTAMDTNPLAADPEVIIAEQEEAFQAGLTVLSRL 185
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.330 0.139 0.373
Gapped
Lambda K H
0.267 0.0726 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,355,116
Number of extensions: 74919
Number of successful extensions: 436
Number of sequences better than 10.0: 1
Number of HSP's gapped: 430
Number of HSP's successfully gapped: 100
Length of query: 88
Length of database: 5,994,473
Length adjustment: 57
Effective length of query: 31
Effective length of database: 4,762,817
Effective search space: 147647327
Effective search space used: 147647327
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 50 (23.0 bits)