BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780519|ref|YP_003064932.1| flagellar biosynthesis protein
FliQ [Candidatus Liberibacter asiaticus str. psy62]
         (88 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780519|ref|YP_003064932.1| flagellar biosynthesis protein FliQ [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 88

 Score =  167 bits (422), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 88/88 (100%), Positives = 88/88 (100%)

Query: 1  MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60
          MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI
Sbjct: 1  MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60

Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88
          TLIISAPFIGGQISSFVTLVLSRIQSSL
Sbjct: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88


>gi|254780666|ref|YP_003065079.1| Fmu (Sun) domain protein [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 445

 Score = 21.9 bits (45), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 46 EVTLTFVPKIIAVFITLIISA 66
           VTL F+P+I AV   ++IS+
Sbjct: 54 NVTLRFLPRIDAVLDFVLISS 74


>gi|254781213|ref|YP_003065626.1| head-to-tail joining protein, putative [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 556

 Score = 21.2 bits (43), Expect = 4.0,   Method: Composition-based stats.
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 66  APFIGGQISSFVTLVLSR 83
            P IGG  S F+  ++SR
Sbjct: 392 GPLIGGLQSEFIGAMISR 409


>gi|254781088|ref|YP_003065501.1| F0F1 ATP synthase subunit A [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 250

 Score = 20.8 bits (42), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 11/40 (27%), Positives = 20/40 (50%)

Query: 31  LGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIG 70
           LGI  +FL  L  +    L F    +  +I ++++  +IG
Sbjct: 203 LGIAFSFLPVLANVAVTGLEFFVAFMQAYIFMVLACVYIG 242


>gi|254780546|ref|YP_003064959.1| hypothetical protein CLIBASIA_02165 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 423

 Score = 20.0 bits (40), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 9/17 (52%), Positives = 11/17 (64%)

Query: 58  VFITLIISAPFIGGQIS 74
           +F  L +SA   GGQIS
Sbjct: 264 LFYLLRVSAAICGGQIS 280


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.330    0.139    0.373 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,107
Number of Sequences: 1233
Number of extensions: 1212
Number of successful extensions: 11
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of query: 88
length of database: 328,796
effective HSP length: 56
effective length of query: 32
effective length of database: 259,748
effective search space:  8311936
effective search space used:  8311936
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 31 (16.5 bits)