HHsearch alignment for GI: 254780520 and conserved domain: COG1843
>COG1843 FlgD Flagellar hook capping protein [Cell motility and secretion].
Probab=99.97 E-value=1.9e-31 Score=201.25 Aligned_cols=90 Identities=47% Similarity=0.664 Sum_probs=78.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHCCCEEEC
Q ss_conf 6677333388999999999832998999889789999999999999999999999999999997---6455322614663
Q gi|254780520|r 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL---AQASSYIGKNITN 92 (131)
Q Consensus 16 ~~~~~~~l~~d~FLkLL~aQL~nQDP~~P~d~~e~isQlAqfs~leq~~~~~~~l~~~~~~~~~---~~a~sliGk~V~~ 92 (131)
T Consensus 22 ~~~~~~~l~kd~FLkLLiaQLknQDPtnPmd~~q~isQmAQfS~vEq~~nmn~~l~~l~~~~~~~~~l~a~~lIGk~V~v 101 (222)
T COG1843 22 STSSNASLGKDDFLKLLIAQLKNQDPTNPMDNTEFISQLAQFSQVEQMENMNTTLESLSSQMTSSQTLQASNLIGKTVMV 101 (222)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 46665442688899999999742799998760479999998988999999999999999876420456777405857996
Q ss_pred CCCEEEEEEEEEE
Q ss_conf 8971899997888
Q gi|254780520|r 93 ADGSISGVVNAIQ 105 (131)
Q Consensus 93 ~~~~~~G~v~~V~ 105 (131)
T Consensus 102 ~~~~~~~~~~~~~ 114 (222)
T COG1843 102 ADGKVTLVDGTVK 114 (222)
T ss_pred ECCCEEEEEEEEE
T ss_conf 0671365200478