HHsearch alignment for GI: 254780520 and conserved domain: PRK06655
>PRK06655 flgD flagellar basal body rod modification protein; Reviewed.
Probab=99.97 E-value=3.9e-30 Score=193.67 Aligned_cols=80 Identities=38% Similarity=0.517 Sum_probs=70.8
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHCCCEEECCC
Q ss_conf 773333889999999998329989998897899999999999999999999999999---99997645532261466389
Q gi|254780520|r 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNLAQASSYIGKNITNAD 94 (131)
Q Consensus 18 ~~~~~l~~d~FLkLL~aQL~nQDP~~P~d~~e~isQlAqfs~leq~~~~~~~l~~~~---~~~~~~~a~sliGk~V~~~~ 94 (131)
T Consensus 26 ~~~~~~~qd~FL~LL~tQLqNQDPl~PmDn~~f~aQLAQfSsvE~~~~~n~~l~~l~~~~~~~q~l~a~slIGk~V~v~g 105 (225)
T PRK06655 26 GSSAADLQDDFLTLLVAQLKNQDPLNPMDNSQMTSQLAQFSTVSGIEKLNTTLGSLASQMTSSQALQASSLVGRGVLVPG 105 (225)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC
T ss_conf 88778889999999999985189999887799999999999999999999999999999988899888764163589866
Q ss_pred CEE
Q ss_conf 718
Q gi|254780520|r 95 GSI 97 (131)
Q Consensus 95 ~~~ 97 (131)
T Consensus 106 ~~~ 108 (225)
T PRK06655 106 DTV 108 (225)
T ss_pred CEE
T ss_conf 557