HHsearch alignment for GI: 254780520 and conserved domain: PRK06655

>PRK06655 flgD flagellar basal body rod modification protein; Reviewed.
Probab=99.97  E-value=3.9e-30  Score=193.67  Aligned_cols=80  Identities=38%  Similarity=0.517  Sum_probs=70.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHCCCEEECCC
Q ss_conf             773333889999999998329989998897899999999999999999999999999---99997645532261466389
Q gi|254780520|r   18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNLAQASSYIGKNITNAD   94 (131)
Q Consensus        18 ~~~~~l~~d~FLkLL~aQL~nQDP~~P~d~~e~isQlAqfs~leq~~~~~~~l~~~~---~~~~~~~a~sliGk~V~~~~   94 (131)
T Consensus        26 ~~~~~~~qd~FL~LL~tQLqNQDPl~PmDn~~f~aQLAQfSsvE~~~~~n~~l~~l~~~~~~~q~l~a~slIGk~V~v~g  105 (225)
T PRK06655         26 GSSAADLQDDFLTLLVAQLKNQDPLNPMDNSQMTSQLAQFSTVSGIEKLNTTLGSLASQMTSSQALQASSLVGRGVLVPG  105 (225)
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC
T ss_conf             88778889999999999985189999887799999999999999999999999999999988899888764163589866


Q ss_pred             CEE
Q ss_conf             718
Q gi|254780520|r   95 GSI   97 (131)
Q Consensus        95 ~~~   97 (131)
T Consensus       106 ~~~  108 (225)
T PRK06655        106 DTV  108 (225)
T ss_pred             CEE
T ss_conf             557