HHsearch alignment for GI: 254780520 and conserved domain: PRK09619
>PRK09619 flgD flagellar basal body rod modification protein; Reviewed.
Probab=99.96 E-value=3.1e-29 Score=188.49 Aligned_cols=78 Identities=23% Similarity=0.397 Sum_probs=69.7
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHCCCEEECCCC
Q ss_conf 7333388999999999832998999889789999999999999999999999999---9999976455322614663897
Q gi|254780520|r 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADG 95 (131)
Q Consensus 19 ~~~~l~~d~FLkLL~aQL~nQDP~~P~d~~e~isQlAqfs~leq~~~~~~~l~~~---~~~~~~~~a~sliGk~V~~~~~ 95 (131)
T Consensus 26 ~g~~~~qddFL~LL~aQLqNQDPl~PmDn~ef~aQLAQFStvE~i~~ln~~l~~l~~~~~s~q~lqaaslVGk~V~v~g~ 105 (220)
T PRK09619 26 PGAEQLNNQFMTLLVAQIQNQDPLNPADGTEFVSQLAQLSQVQSTENMAKLMKSNTVLMDNMQTLATANLVGQQVMVESH 105 (220)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCC
T ss_conf 74146799999999999852899998877899999998988999999999999999998878999999754987996476
Q ss_pred E
Q ss_conf 1
Q gi|254780520|r 96 S 96 (131)
Q Consensus 96 ~ 96 (131)
T Consensus 106 ~ 106 (220)
T PRK09619 106 E 106 (220)
T ss_pred E
T ss_conf 3