Query gi|254780520|ref|YP_003064933.1| flagellar basal body rod modification protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 131 No_of_seqs 110 out of 613 Neff 5.5 Searched_HMMs 33803 Date Wed Jun 1 18:04:00 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780520.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1xf1_A C5A peptidase, SCP; hy 99.4 7.4E-18 2.2E-22 122.4 -16.0 77 18-94 2-81 (213) 2 >2h1r_A Dimethyladenosine tran 74.7 2.2 6.5E-05 21.7 2.5 17 18-34 71-87 (98) 3 >1zq9_A Probable dimethyladeno 73.5 2.4 7.2E-05 21.4 2.5 18 18-35 72-89 (97) 4 >1pm3_A MTH1895; unknown funct 66.3 8.9 0.00026 18.2 7.2 54 78-131 20-88 (97) 5 >3c12_A FLGD, flagellar protei 62.7 10 0.00031 17.8 4.4 32 98-130 106-138 (138) 6 >1rzh_H Reaction center protei 41.2 24 0.0007 15.7 4.7 37 80-116 28-66 (145) 7 >1eys_H Photosynthetic reactio 36.2 28 0.00084 15.3 4.8 37 80-116 29-67 (142) 8 >2wjn_H Reaction center protei 34.7 30 0.00089 15.1 4.8 37 81-117 36-74 (146) 9 >2jk8_A BEPA, putative cell fi 25.3 44 0.0013 14.2 2.6 34 24-57 35-68 (79) 10 >2e70_A Transcription elongati 25.0 32 0.00095 15.0 1.3 41 83-123 17-59 (71) 11 >3htr_A Uncharacterized PRC-ba 24.2 46 0.0014 14.0 5.1 32 85-116 1-34 (101) 12 >1a4p_A S100A10; S100 family, 22.3 43 0.0013 14.2 1.5 37 17-53 19-57 (63) No 1 >>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* (A:616-828) Probab=99.44 E-value=7.4e-18 Score=122.44 Aligned_cols=77 Identities=5% Similarity=-0.003 Sum_probs=67.7 Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHCCCEEECCC Q ss_conf 7733338899999999983299899988978999999999999999999999999999---9997645532261466389 Q gi|254780520|r 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK---SNNLAQASSYIGKNITNAD 94 (131) Q Consensus 18 ~~~~~l~~d~FLkLL~aQL~nQDP~~P~d~~e~isQlAqfs~leq~~~~~~~l~~~~~---~~~~~~a~sliGk~V~~~~ 94 (131) +.++.++++.||+||++||+||||++|||+++|++|+|||+++|++.++++.+..+.. ..+..++.+++|+.+...+ T Consensus 2 ~~~~~~~~~~Fl~ll~~q~~nqdp~~p~~~~~f~~q~aq~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 81 (213) T 1xf1_A 2 PIYDSKDGSSYYHEANSDAKDQLDGDGLQFYALKNNFTALTTESNPWTIIKAVKEGVENIEDIESSEITETIFAGTFAKQ 81 (213) T ss_dssp CGGGCSSSCCSSCCCCTTCTTBCCCSTTSCCTTSSCSSEEEEEECCHHHHHHHHHTCSCSTTSSCCCCCEEEETTEEECS T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC T ss_conf 33235666531024566665554554431234555446441223454212222344211244555555542112410001 No 2 >>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} (A:202-299) Probab=74.69 E-value=2.2 Score=21.69 Aligned_cols=17 Identities=41% Similarity=0.669 Sum_probs=13.9 Q ss_pred CCCCCCCHHHHHHHHHH Q ss_conf 77333388999999999 Q gi|254780520|r 18 KSKKTLGQDAFLKLLIT 34 (131) Q Consensus 18 ~~~~~l~~d~FLkLL~a 34 (131) +-...||.||||+||.+ T Consensus 71 kRa~kmDidDfL~LL~~ 87 (98) T 2h1r_A 71 KRSINLDENDFLKLLLE 87 (98) T ss_dssp CBGGGCCHHHHHHHHHH T ss_pred CCHHHCCHHHHHHHHHH T ss_conf 58133999999999999 No 3 >>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} (A:189-285) Probab=73.48 E-value=2.4 Score=21.41 Aligned_cols=18 Identities=28% Similarity=0.497 Sum_probs=14.2 Q ss_pred CCCCCCCHHHHHHHHHHH Q ss_conf 773333889999999998 Q gi|254780520|r 18 KSKKTLGQDAFLKLLITQ 35 (131) Q Consensus 18 ~~~~~l~~d~FLkLL~aQ 35 (131) +-...||.||||+||.+= T Consensus 72 kRa~kmD~dDfL~LL~~F 89 (97) T 1zq9_A 72 KRARSMDIDDFIRLLHGF 89 (97) T ss_dssp CBGGGCCHHHHHHHHHHH T ss_pred CCHHHCCHHHHHHHHHHH T ss_conf 880449999999999999 No 4 >>1pm3_A MTH1895; unknown function, structural genomics, PSI, protein structure initiative; 3.15A {Methanothermobacterthermautotrophicus} (A:) Probab=66.28 E-value=8.9 Score=18.18 Aligned_cols=54 Identities=13% Similarity=0.345 Sum_probs=39.1 Q ss_pred HHHHHHHHCCCEEECCCCEEEEEEEEEEEC-CCCEE-EEEEC--CE-----------EEECCCCEEEEC Q ss_conf 976455322614663897189999788862-79669-99978--97-----------896231058609 Q gi|254780520|r 78 NLAQASSYIGKNITNADGSISGVVNAIQVS-STGLT-AITVD--NT-----------EIPITTGIRISN 131 (131) Q Consensus 78 ~~~~a~sliGk~V~~~~~~~~G~v~~V~~~-~~g~~-~~~v~--~~-----------~v~~~~v~~V~d 131 (131) ....+..|+||.|...+|..-|.|..+.+. +.|.+ .+.+. +. .+|.+.+..|+| T Consensus 20 ~~~~~s~L~gk~V~~~~G~~iG~V~Dv~iD~~~G~i~~lvv~~~g~~~~l~~~~~~v~IP~~~V~~vgd 88 (97) T 1pm3_A 20 HMRIVEEMVGKEVLDSSAKVIGKVKDVEVDIESQAIESLVLGKGGISEGLGLSKGETIVPYEMVKKIGD 88 (97) T ss_dssp CEETTTTSSSCEEECTTSCEEEEEEEEEEETTTTEEEEEEEECCC---------CEEEEEGGGEEEESS T ss_pred CEEEHHHHCCCEEECCCCCEEEEEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCEEEEEHHHEEEECC T ss_conf 247889828997799999898899889997899999999991698403100289479999687449898 No 5 >>3c12_A FLGD, flagellar protein; HOOK capping, IG-like domain, FN-III domain, tudor-like domain, flagellar biogenesis, flagellum; 2.51A {Xanthomonas campestris PV} (A:) Probab=62.69 E-value=10 Score=17.78 Aligned_cols=32 Identities=13% Similarity=0.277 Sum_probs=20.4 Q ss_pred EEEEEEEEECCCCEEEEEE-CCEEEECCCCEEEE Q ss_conf 9999788862796699997-89789623105860 Q gi|254780520|r 98 SGVVNAIQVSSTGLTAITV-DNTEIPITTGIRIS 130 (131) Q Consensus 98 ~G~v~~V~~~~~g~~~~~v-~~~~v~~~~v~~V~ 130 (131) .|.|++|.+ ++|.+.+.+ ++..+++..|.+|+ T Consensus 106 ~~~V~~V~~-~~g~~~l~l~~~~~v~~~~i~~is 138 (138) T 3c12_A 106 DAPVDSVTI-GSDGLYLNLTGLGTSPLANVLRVS 138 (138) T ss_dssp EEEEEEEEE-ETTEEEEEETTTEEEETTSCCBCC T ss_pred EEEEEEEEE-CCCEEEEEECCCCEEEHHHEEECC T ss_conf 999999997-599179998699599589909839 No 6 >>1rzh_H Reaction center protein H chain; bacterial photosynthesis, proton transfer pathway, revertant, X-RAY crystallography; HET: BCL BPH BPB U10 SPO LDA HTO CDL; 1.80A {Rhodobacter sphaeroides} (H:116-260) Probab=41.23 E-value=24 Score=15.73 Aligned_cols=37 Identities=24% Similarity=0.286 Sum_probs=27.9 Q ss_pred HHHHHHCCCEEECCCCEEEEEEEEEEECC-CCEE-EEEE Q ss_conf 64553226146638971899997888627-9669-9997 Q gi|254780520|r 80 AQASSYIGKNITNADGSISGVVNAIQVSS-TGLT-AITV 116 (131) Q Consensus 80 ~~a~sliGk~V~~~~~~~~G~v~~V~~~~-~g~~-~~~v 116 (131) ..+..|+|+.|...+|..-|.|..+-+.. +|.+ .+++ T Consensus 28 ~~a~~l~G~~V~~~~ge~IG~V~dl~id~~~g~v~~~vV 66 (145) T 1rzh_H 28 SAGKNPIGLPVRGCDLEIAGKVVDIWVDIPEQMARFLEV 66 (145) T ss_dssp EESCCCTTCEEEETTSCEEEEEEEEEEETTTTEEEEEEE T ss_pred ECCCCCCCCEEECCCCCCCCEEEEEEEECCCCEEEEEEE T ss_conf 068885678448689985127889898188785889999 No 7 >>1eys_H Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} (H:118-259) Probab=36.24 E-value=28 Score=15.27 Aligned_cols=37 Identities=22% Similarity=0.316 Sum_probs=27.8 Q ss_pred HHHHHHCCCEEECCCCEEEEEEEEEEEC-CCCEE-EEEE Q ss_conf 6455322614663897189999788862-79669-9997 Q gi|254780520|r 80 AQASSYIGKNITNADGSISGVVNAIQVS-STGLT-AITV 116 (131) Q Consensus 80 ~~a~sliGk~V~~~~~~~~G~v~~V~~~-~~g~~-~~~v 116 (131) ..+..|+|+.|...+|..-|.|+.+-+. .+|.+ .+++ T Consensus 29 ~~a~~l~G~~V~~~dge~IG~V~div~d~~~g~v~~vvv 67 (142) T 1eys_H 29 EGDPDPRGMTVVGLDGEVAGTVSDVWVDRSEPQIRYLEV 67 (142) T ss_dssp TTSCCCTTCEEECSSSCEEEEEEEEEEETTTTEEEEEEE T ss_pred CCCCCCCCCEEECCCCCEEEEEEEEEEECCCCEEEEEEE T ss_conf 899899989868689996778989999899892889999 No 8 >>2wjn_H Reaction center protein H chain; bacteriochlorophyll, lipidic-sponge phase, photosynthesis, electron transport, cell membrane; HET: HEM FME BCB BPB MPG MQ7 NS5; 1.86A {Rhodopseudomonas viridis} PDB: 1prc_H* 1r2c_H* 1vrn_H* 1dxr_H* 2jbl_H* 2prc_H* 2i5n_H* 2wjm_H* 3d38_H* 3prc_H* 5prc_H* 6prc_H* 7prc_H* 3g7f_H* (H:113-258) Probab=34.73 E-value=30 Score=15.12 Aligned_cols=37 Identities=19% Similarity=0.212 Sum_probs=28.0 Q ss_pred HHHHHCCCEEECCCCEEEEEEEEEEECC-CCEE-EEEEC Q ss_conf 4553226146638971899997888627-9669-99978 Q gi|254780520|r 81 QASSYIGKNITNADGSISGVVNAIQVSS-TGLT-AITVD 117 (131) Q Consensus 81 ~a~sliGk~V~~~~~~~~G~v~~V~~~~-~g~~-~~~v~ 117 (131) .+..|+|++|...+|..-|.|..+-+.. +|.+ .++++ T Consensus 36 ~~~~l~G~~V~~~~G~~iG~V~dv~~d~~~g~v~~~Vv~ 74 (146) T 2wjn_H 36 GDVDPRGLPVVAADGVEAGTVTDLWVDRSEHYFRYLELS 74 (146) T ss_dssp TSCCCTTCEEECTTSCEEEEEEEEEEETTTTEEEEEEEE T ss_pred CCCCCCCCEEECCCCCCCCEEEEEEEECCCCEEEEEEEE T ss_conf 889855673486899860457689997898848999999 No 9 >>2jk8_A BEPA, putative cell filamentation protein (BEPA protein); T4SS, OB fold, FIC domain, substrate protein, protein translocation; 2.8A {Bartonella henselae} PDB: 2vy3_A 2vza_A* (A:84-162) Probab=25.30 E-value=44 Score=14.16 Aligned_cols=34 Identities=9% Similarity=0.033 Sum_probs=30.1 Q ss_pred CHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH Q ss_conf 8899999999983299899988978999999999 Q gi|254780520|r 24 GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVF 57 (131) Q Consensus 24 ~~d~FLkLL~aQL~nQDP~~P~d~~e~isQlAqf 57 (131) ..+.-|+-+..+|+..+.+.-+|-.||+.++|.+ T Consensus 35 ~I~~~l~~~~~~l~~~~~l~gl~~~ef~~~lA~~ 68 (79) T 2jk8_A 35 EIQEGLQRLDQTLAEKNNLQGLTREEFNSEAIEL 68 (79) T ss_dssp HHHHHHHHHHHHHHHTGGGCSCCHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH T ss_conf 9999999999999976431358825699999999 No 10 >>2e70_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=25.02 E-value=32 Score=14.96 Aligned_cols=41 Identities=12% Similarity=0.392 Sum_probs=22.6 Q ss_pred HHHCCCEEECCCCEEEEEEEEEEECCCCEEEEEECC--EEEEC Q ss_conf 532261466389718999978886279669999789--78962 Q gi|254780520|r 83 SSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDN--TEIPI 123 (131) Q Consensus 83 ~sliGk~V~~~~~~~~G~v~~V~~~~~g~~~~~v~~--~~v~~ 123 (131) -.||||+|....|...|..-.|.-..+..+.+.... +.|.+ T Consensus 17 d~liGktV~I~~G~yKG~~G~Vkd~t~~~~rVeLhs~~K~v~V 59 (71) T 2e70_A 17 NELIGQTVRISQGPYKGYIGVVKDATESTARVELHSTCQTISV 59 (71) T ss_dssp TSSTTSEEEECSSTTTTCEEEEEEECSSCEEEEESSSCCEEEE T ss_pred CCCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEE T ss_conf 4445888999652768878899965288699998368849998 No 11 >>3htr_A Uncharacterized PRC-barrel domain protein; beta-barrel, photo-reaction-center domain, structural genomics, PSI-2; HET: MSE; 2.06A {Rhodopseudomonas palustris} (A:20-120) Probab=24.23 E-value=46 Score=14.04 Aligned_cols=32 Identities=16% Similarity=0.346 Sum_probs=24.6 Q ss_pred HCCCEEECCCCEEEEEEEEEEECC-CCEE-EEEE Q ss_conf 226146638971899997888627-9669-9997 Q gi|254780520|r 85 YIGKNITNADGSISGVVNAIQVSS-TGLT-AITV 116 (131) Q Consensus 85 liGk~V~~~~~~~~G~v~~V~~~~-~g~~-~~~v 116 (131) |+|++|...+|..-|.|..+-+.. +|.+ .+++ T Consensus 1 L~G~~V~~~dge~iG~V~dv~id~~~g~v~~~vv 34 (101) T 3htr_A 1 VQGTAVYGPDGEKIGSIERVXIEKVSGRVSYAVL 34 (101) T ss_dssp HTTCEEECTTSCEEEEEEEEEEETTTCBEEEEEE T ss_pred CCCCEEECCCCCEEEEEEEEEEECCCCCEEEEEE T ss_conf 3488889899898888889999889897889999 No 12 >>1a4p_A S100A10; S100 family, EF-hand protein, ligand of annexin II, calcium/phospholipid binding protein; 2.25A {Homo sapiens} (A:1-63) Probab=22.26 E-value=43 Score=14.23 Aligned_cols=37 Identities=11% Similarity=0.263 Sum_probs=25.4 Q ss_pred CCCCCCCCHHHHHHHHHHHHCC--CCCCCCCCHHHHHHH Q ss_conf 6773333889999999998329--989998897899999 Q gi|254780520|r 17 SKSKKTLGQDAFLKLLITQIKH--QDPTEPMKASEQVAQ 53 (131) Q Consensus 17 ~~~~~~l~~d~FLkLL~aQL~n--QDP~~P~d~~e~isQ 53 (131) +....+|.+.+|-+||-.||.+ +.|-+|-.-.+++.. T Consensus 19 aG~~~tLsk~Elk~Ll~~El~~fl~~~~d~~~vd~~m~~ 57 (63) T 1a4p_A 19 AGDKGYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKD 57 (63) T ss_dssp HGGGCSBCHHHHHHHHHHHCHHHHHHSCCTTHHHHHHHH T ss_pred CCCCCEEEHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH T ss_conf 699998709999999998342102233899999999999 Done!