BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780520|ref|YP_003064933.1| flagellar basal body rod modification protein [Candidatus Liberibacter asiaticus str. psy62] (131 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780520|ref|YP_003064933.1| flagellar basal body rod modification protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040197|gb|ACT56993.1| flagellar basal body rod modification protein [Candidatus Liberibacter asiaticus str. psy62] Length = 131 Score = 261 bits (667), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 131/131 (100%), Positives = 131/131 (100%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM Sbjct: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 Query: 61 EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120 EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE Sbjct: 61 EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120 Query: 121 IPITTGIRISN 131 IPITTGIRISN Sbjct: 121 IPITTGIRISN 131 >gi|315122289|ref|YP_004062778.1| flagellar basal body rod modification protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495691|gb|ADR52290.1| flagellar basal body rod modification protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 125 Score = 191 bits (486), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 94/124 (75%), Positives = 105/124 (84%) Query: 7 VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66 +N TQ+E SK +G DAF KLLI Q+KHQDPTEPMKASEQVAQLAVFSQMEQSVQM Sbjct: 1 MNSTQKESLPSKPNTMMGHDAFFKLLIAQMKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 60 Query: 67 NSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTG 126 N+ L+ELL SNNLAQASSYIGKNI N DGS+SG+V A+QVSSTGLTAIT +N EIPI TG Sbjct: 61 NTNLKELLNSNNLAQASSYIGKNIENVDGSMSGIVKAVQVSSTGLTAITAENQEIPIKTG 120 Query: 127 IRIS 130 IR+S Sbjct: 121 IRVS 124 >gi|227820880|ref|YP_002824850.1| flagellar basal body rod modification protein [Sinorhizobium fredii NGR234] gi|227339879|gb|ACP24097.1| predicted flagellar hook capping protein FlgD [Sinorhizobium fredii NGR234] Length = 148 Score = 130 bits (327), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 63/108 (58%), Positives = 84/108 (77%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82 L +FLKLLI Q+++QDPT+PM A+EQ++QLA FSQ+EQS++ NS L+ LL S +L QA Sbjct: 33 LNYQSFLKLLIAQMQNQDPTDPMDATEQISQLATFSQVEQSIKTNSNLESLLASESLTQA 92 Query: 83 SSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 S+YIGK IT++DG SGVV ++V+S G+TAIT D EI I TGI +S Sbjct: 93 STYIGKTITSSDGKTSGVVAEVEVTSDGVTAITTDGKEIAIETGISVS 140 >gi|86356335|ref|YP_468227.1| flagellar basal body rod modification protein [Rhizobium etli CFN 42] gi|86280437|gb|ABC89500.1| flagellar basal-body rod protein [Rhizobium etli CFN 42] Length = 142 Score = 127 bits (320), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 60/115 (52%), Positives = 88/115 (76%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 ++SK TL D FL+LLI Q+K+QDPT+PM ASEQVAQLA FSQ+EQ++Q N+ L LL S Sbjct: 21 AQSKATLNYDNFLQLLIAQMKNQDPTDPMDASEQVAQLATFSQVEQTIQTNTKLDTLLAS 80 Query: 77 NNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 ++L QASSY+GK + +ADG++ GV+++++V S G+ A T D +I + GI +++ Sbjct: 81 SSLTQASSYVGKYMESADGTVKGVIDSVKVYSDGIIATTTDGDKILVQAGITVAD 135 >gi|190890387|ref|YP_001976929.1| flagellar basal-body rod protein [Rhizobium etli CIAT 652] gi|190695666|gb|ACE89751.1| flagellar basal-body rod protein [Rhizobium etli CIAT 652] gi|327193064|gb|EGE59976.1| flagellar basal-body rod protein [Rhizobium etli CNPAF512] Length = 141 Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 59/112 (52%), Positives = 85/112 (75%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79 K TL D FL+LLI Q+K+QDPT+PM ASEQVAQLA FSQ+EQ++Q N+ L LL S++L Sbjct: 23 KATLNYDNFLQLLIAQMKNQDPTDPMDASEQVAQLATFSQVEQTIQTNTKLDTLLASSSL 82 Query: 80 AQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 QASSY+GK + +ADG++ GV+++++V S G+ A T D +I + GI +++ Sbjct: 83 TQASSYVGKYMESADGTVKGVIDSVKVYSDGIIATTTDGGKILVQAGITVAD 134 >gi|218506521|ref|ZP_03504399.1| flagellar basal body rod modification protein [Rhizobium etli Brasil 5] Length = 118 Score = 123 bits (309), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 58/110 (52%), Positives = 84/110 (76%) Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ 81 TL D FL+LLI Q+K+QDPT+PM ASEQVAQLA FSQ+EQ++Q N+ L LL S++L Q Sbjct: 2 TLNYDNFLQLLIAQMKNQDPTDPMDASEQVAQLATFSQVEQTIQTNTKLDTLLASSSLTQ 61 Query: 82 ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 ASSY+GK + +ADG++ GV+++++V S G+ A T D +I + GI +++ Sbjct: 62 ASSYVGKYMESADGTVKGVIDSVKVYSDGIIATTTDGGKILVQAGITVAD 111 >gi|116250505|ref|YP_766343.1| flagellar basal body rod modification protein [Rhizobium leguminosarum bv. viciae 3841] gi|115255153|emb|CAK06227.1| putative hook formation protein [Rhizobium leguminosarum bv. viciae 3841] Length = 142 Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 57/115 (49%), Positives = 85/115 (73%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 ++SK TL D FL+LLI Q+K+QDPT+P+ ASEQ++QLA FSQ+EQ++Q N+ L LL S Sbjct: 21 AQSKATLNYDNFLQLLIAQMKNQDPTDPVDASEQMSQLASFSQVEQTIQTNTKLDTLLAS 80 Query: 77 NNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 ++L QASSY+GK + +ADG++ G + +++V S G+ A T D I + GI I++ Sbjct: 81 SSLTQASSYVGKYMESADGTVKGTIESVKVYSDGIIATTTDGGNILVQAGITIAD 135 >gi|237817497|ref|ZP_04596488.1| flagellar basal body rod modification protein [Brucella abortus str. 2308 A] gi|294852963|ref|ZP_06793635.1| flagellar hook capping protein [Brucella sp. NVSL 07-0026] gi|237787332|gb|EEP61549.1| flagellar basal body rod modification protein [Brucella abortus str. 2308 A] gi|294818618|gb|EFG35618.1| flagellar hook capping protein [Brucella sp. NVSL 07-0026] Length = 151 Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 56/111 (50%), Positives = 82/111 (73%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79 K ++ D+FLKLL+TQ+++QDPT+PM ++ V+QLA FS +EQSVQMNS L+ L+ + +L Sbjct: 41 KASVDYDSFLKLLVTQMQNQDPTQPMDPTQYVSQLATFSNVEQSVQMNSKLETLIANTSL 100 Query: 80 AQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 QA +IG+ +TNADGSISGVV ++ + S+G+ A D + I G+RIS Sbjct: 101 TQAEGWIGRTLTNADGSISGVVKSVTIQSSGMLAELEDGKTLTIGEGVRIS 151 >gi|17988508|ref|NP_541141.1| flagellar basal body rod modification protein [Brucella melitensis bv. 1 str. 16M] gi|23500849|ref|NP_700289.1| flagellar basal body rod modification protein [Brucella suis 1330] gi|62317952|ref|YP_223805.1| flagellar basal body rod modification protein [Brucella abortus bv. 1 str. 9-941] gi|83269929|ref|YP_419220.1| flagellar basal body rod modification protein [Brucella melitensis biovar Abortus 2308] gi|148557915|ref|YP_001257999.1| flagellar basal body rod modification protein [Brucella ovis ATCC 25840] gi|161621177|ref|YP_001595063.1| flagellar basal body rod modification protein [Brucella canis ATCC 23365] gi|163845452|ref|YP_001623107.1| flagellar basal body rod modification protein [Brucella suis ATCC 23445] gi|189023203|ref|YP_001932944.1| flagellar basal body rod modification protein [Brucella abortus S19] gi|225628424|ref|ZP_03786458.1| flagellar basal body rod modification protein [Brucella ceti str. Cudo] gi|225686880|ref|YP_002734852.1| flagellar basal body rod modification protein [Brucella melitensis ATCC 23457] gi|254691616|ref|ZP_05154870.1| flagellar basal body rod modification protein [Brucella abortus bv. 6 str. 870] gi|254695088|ref|ZP_05156916.1| flagellar basal body rod modification protein [Brucella abortus bv. 3 str. Tulya] gi|254698184|ref|ZP_05160012.1| flagellar basal body rod modification protein [Brucella abortus bv. 2 str. 86/8/59] gi|254699258|ref|ZP_05161086.1| flagellar basal body rod modification protein [Brucella suis bv. 5 str. 513] gi|254702378|ref|ZP_05164206.1| flagellar basal body rod modification protein [Brucella suis bv. 3 str. 686] gi|254706501|ref|ZP_05168329.1| flagellar basal body rod modification protein [Brucella pinnipedialis M163/99/10] gi|254711214|ref|ZP_05173025.1| flagellar basal body rod modification protein [Brucella pinnipedialis B2/94] gi|254711813|ref|ZP_05173624.1| flagellar basal body rod modification protein [Brucella ceti M644/93/1] gi|254714882|ref|ZP_05176693.1| flagellar basal body rod modification protein [Brucella ceti M13/05/1] gi|254731629|ref|ZP_05190207.1| flagellar basal body rod modification protein [Brucella abortus bv. 4 str. 292] gi|256015893|ref|YP_003105902.1| flagellar basal body rod modification protein [Brucella microti CCM 4915] gi|256030157|ref|ZP_05443771.1| flagellar basal body rod modification protein [Brucella pinnipedialis M292/94/1] gi|256042861|ref|ZP_05445807.1| flagellar basal body rod modification protein [Brucella melitensis bv. 1 str. Rev.1] gi|256059809|ref|ZP_05450004.1| flagellar basal body rod modification protein [Brucella neotomae 5K33] gi|256112181|ref|ZP_05453102.1| flagellar basal body rod modification protein [Brucella melitensis bv. 3 str. Ether] gi|256158336|ref|ZP_05456240.1| flagellar basal body rod modification protein [Brucella ceti M490/95/1] gi|256252730|ref|ZP_05458266.1| flagellar basal body rod modification protein [Brucella ceti B1/94] gi|256256803|ref|ZP_05462339.1| flagellar basal body rod modification protein [Brucella abortus bv. 9 str. C68] gi|256261983|ref|ZP_05464515.1| flagellar hook capping protein [Brucella melitensis bv. 2 str. 63/9] gi|260166791|ref|ZP_05753602.1| flagellar basal body rod modification protein [Brucella sp. F5/99] gi|260544137|ref|ZP_05819958.1| flagellar hook capping protein [Brucella abortus NCTC 8038] gi|260564098|ref|ZP_05834583.1| flagellar hook capping protein [Brucella melitensis bv. 1 str. 16M] gi|260568719|ref|ZP_05839188.1| flagellar hook capping protein [Brucella suis bv. 4 str. 40] gi|260757247|ref|ZP_05869595.1| flagellar hook capping protein [Brucella abortus bv. 6 str. 870] gi|260759388|ref|ZP_05871736.1| flagellar hook capping protein [Brucella abortus bv. 4 str. 292] gi|260762631|ref|ZP_05874963.1| flagellar hook capping protein [Brucella abortus bv. 2 str. 86/8/59] gi|260883051|ref|ZP_05894665.1| flagellar hook capping protein [Brucella abortus bv. 9 str. C68] gi|261215439|ref|ZP_05929720.1| flagellar hook capping protein [Brucella abortus bv. 3 str. Tulya] gi|261216572|ref|ZP_05930853.1| flagellar hook capping protein [Brucella ceti M13/05/1] gi|261219808|ref|ZP_05934089.1| flagellar hook capping protein [Brucella ceti B1/94] gi|261313955|ref|ZP_05953152.1| flagellar hook capping protein [Brucella pinnipedialis M163/99/10] gi|261318805|ref|ZP_05958002.1| flagellar hook capping protein [Brucella pinnipedialis B2/94] gi|261319442|ref|ZP_05958639.1| flagellar hook capping protein [Brucella ceti M644/93/1] gi|261323789|ref|ZP_05962986.1| flagellar hook capping protein [Brucella neotomae 5K33] gi|261749697|ref|ZP_05993406.1| flagellar hook capping protein [Brucella suis bv. 5 str. 513] gi|261752941|ref|ZP_05996650.1| flagellar hook capping protein [Brucella suis bv. 3 str. 686] gi|261756168|ref|ZP_05999877.1| flagellar hook capping protein [Brucella sp. F5/99] gi|265987188|ref|ZP_06099745.1| flagellar hook capping protein [Brucella pinnipedialis M292/94/1] gi|265989296|ref|ZP_06101853.1| flagellar hook capping protein [Brucella melitensis bv. 1 str. Rev.1] gi|265993608|ref|ZP_06106165.1| flagellar hook capping protein [Brucella melitensis bv. 3 str. Ether] gi|265996851|ref|ZP_06109408.1| flagellar hook capping protein [Brucella ceti M490/95/1] gi|297250156|ref|ZP_06933857.1| flagellar hook capping protein [Brucella abortus bv. 5 str. B3196] gi|17984300|gb|AAL53405.1| basal-body rod modification protein flgd [Brucella melitensis bv. 1 str. 16M] gi|23464513|gb|AAN34294.1| basal-body rod modification protein FlgD, putative [Brucella suis 1330] gi|62198145|gb|AAX76444.1| hypothetical FlgD basal-body rod modification protein [Brucella abortus bv. 1 str. 9-941] gi|82940203|emb|CAJ13259.1| ATP/GTP-binding site motif A (P-loop):Flagellar hook capping protein [Brucella melitensis biovar Abortus 2308] gi|148369200|gb|ABQ62072.1| putative basal-body rod modification protein FlgD [Brucella ovis ATCC 25840] gi|161337988|gb|ABX64292.1| flagellar hook capping protein [Brucella canis ATCC 23365] gi|163676175|gb|ABY40285.1| Hypothetical protein, conserved [Brucella suis ATCC 23445] gi|189021777|gb|ACD74498.1| Flagellar hook capping protein [Brucella abortus S19] gi|225616270|gb|EEH13318.1| flagellar basal body rod modification protein [Brucella ceti str. Cudo] gi|225642985|gb|ACO02898.1| flagellar hook capping protein [Brucella melitensis ATCC 23457] gi|255998553|gb|ACU50240.1| flagellar basal body rod modification protein [Brucella microti CCM 4915] gi|260097408|gb|EEW81282.1| flagellar hook capping protein [Brucella abortus NCTC 8038] gi|260151741|gb|EEW86834.1| flagellar hook capping protein [Brucella melitensis bv. 1 str. 16M] gi|260155384|gb|EEW90465.1| flagellar hook capping protein [Brucella suis bv. 4 str. 40] gi|260669706|gb|EEX56646.1| flagellar hook capping protein [Brucella abortus bv. 4 str. 292] gi|260673052|gb|EEX59873.1| flagellar hook capping protein [Brucella abortus bv. 2 str. 86/8/59] gi|260677355|gb|EEX64176.1| flagellar hook capping protein [Brucella abortus bv. 6 str. 870] gi|260872579|gb|EEX79648.1| flagellar hook capping protein [Brucella abortus bv. 9 str. C68] gi|260917046|gb|EEX83907.1| flagellar hook capping protein [Brucella abortus bv. 3 str. Tulya] gi|260918392|gb|EEX85045.1| flagellar hook capping protein [Brucella ceti B1/94] gi|260921661|gb|EEX88229.1| flagellar hook capping protein [Brucella ceti M13/05/1] gi|261292132|gb|EEX95628.1| flagellar hook capping protein [Brucella ceti M644/93/1] gi|261298028|gb|EEY01525.1| flagellar hook capping protein [Brucella pinnipedialis B2/94] gi|261299769|gb|EEY03266.1| flagellar hook capping protein [Brucella neotomae 5K33] gi|261302981|gb|EEY06478.1| flagellar hook capping protein [Brucella pinnipedialis M163/99/10] gi|261736152|gb|EEY24148.1| flagellar hook capping protein [Brucella sp. F5/99] gi|261739450|gb|EEY27376.1| flagellar hook capping protein [Brucella suis bv. 5 str. 513] gi|261742694|gb|EEY30620.1| flagellar hook capping protein [Brucella suis bv. 3 str. 686] gi|262551148|gb|EEZ07309.1| flagellar hook capping protein [Brucella ceti M490/95/1] gi|262764478|gb|EEZ10510.1| flagellar hook capping protein [Brucella melitensis bv. 3 str. Ether] gi|262999965|gb|EEZ12655.1| flagellar hook capping protein [Brucella melitensis bv. 1 str. Rev.1] gi|263091467|gb|EEZ16003.1| flagellar hook capping protein [Brucella melitensis bv. 2 str. 63/9] gi|264659385|gb|EEZ29646.1| flagellar hook capping protein [Brucella pinnipedialis M292/94/1] gi|297174025|gb|EFH33389.1| flagellar hook capping protein [Brucella abortus bv. 5 str. B3196] gi|326411298|gb|ADZ68362.1| flagellar basal body rod modification protein [Brucella melitensis M28] gi|326554587|gb|ADZ89226.1| flagellar basal body rod modification protein [Brucella melitensis M5-90] Length = 137 Score = 117 bits (294), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 56/111 (50%), Positives = 82/111 (73%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79 K ++ D+FLKLL+TQ+++QDPT+PM ++ V+QLA FS +EQSVQMNS L+ L+ + +L Sbjct: 27 KASVDYDSFLKLLVTQMQNQDPTQPMDPTQYVSQLATFSNVEQSVQMNSKLETLIANTSL 86 Query: 80 AQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 QA +IG+ +TNADGSISGVV ++ + S+G+ A D + I G+RIS Sbjct: 87 TQAEGWIGRTLTNADGSISGVVKSVTIQSSGMLAELEDGKTLTIGEGVRIS 137 >gi|163758037|ref|ZP_02165125.1| flagellar basal-body rod modification protein D [Hoeflea phototrophica DFL-43] gi|162284326|gb|EDQ34609.1| flagellar basal-body rod modification protein D [Hoeflea phototrophica DFL-43] Length = 133 Score = 117 bits (292), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 55/110 (50%), Positives = 81/110 (73%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79 K TL D FL LL+ Q+K+QDPT+PM ++EQ+AQLA FSQ+EQ++Q N L+ELL+S++L Sbjct: 23 KATLDYDTFLTLLVEQMKNQDPTDPMDSTEQIAQLATFSQVEQTIQTNKHLEELLQSSSL 82 Query: 80 AQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129 +QA S IG+ IT+ D ++SG + +QV S GL A+ D T++ + G+ I Sbjct: 83 SQAGSLIGRTITSNDETVSGTIEEVQVYSDGLVAVLEDGTKVVVGPGVSI 132 >gi|13472597|ref|NP_104164.1| flagellar basal body rod modification protein [Mesorhizobium loti MAFF303099] gi|14023343|dbj|BAB49950.1| flagellar hook assembly scaffolding protein; FlgD [Mesorhizobium loti MAFF303099] Length = 135 Score = 116 bits (291), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 54/115 (46%), Positives = 88/115 (76%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74 +KS SK + +FLKLLI ++K+QDPT+PM +++ VAQLA FSQ+EQSVQ N+ L +++ Sbjct: 17 TKSTSKTAVDYQSFLKLLIAEMKNQDPTKPMDSTQYVAQLATFSQVEQSVQSNTKLDQIM 76 Query: 75 KSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129 +S+ L+QA + IG++IT+ADG +G+V ++ ++S+GL A+ D T++P+ G+ I Sbjct: 77 QSSALSQADAIIGRSITSADGKTTGIVASVTLASSGLIAVLQDGTKVPVGPGVSI 131 >gi|241203129|ref|YP_002974225.1| flagellar basal body rod modification protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857019|gb|ACS54686.1| flagellar hook capping protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 144 Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 55/112 (49%), Positives = 82/112 (73%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79 K TL D FL+LLI Q+K+QDPT+P+ ASEQ++QLA FSQ+EQ++Q N+ L LL S++L Sbjct: 24 KATLNYDNFLQLLIAQMKNQDPTDPVDASEQMSQLASFSQVEQTIQTNTKLDTLLASSSL 83 Query: 80 AQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 QASSY+GK + +ADG++ G + +++V S G+ A T D I + GI +++ Sbjct: 84 TQASSYVGKYMESADGTVKGTIESVKVYSDGIIATTTDGGNILVQAGITVAD 135 >gi|254720778|ref|ZP_05182589.1| flagellar basal body rod modification protein [Brucella sp. 83/13] gi|265985836|ref|ZP_06098571.1| flagellar hook capping protein [Brucella sp. 83/13] gi|306840131|ref|ZP_07472916.1| flagellar basal body rod modification protein [Brucella sp. NF 2653] gi|306845414|ref|ZP_07477988.1| flagellar basal body rod modification protein [Brucella sp. BO1] gi|264664428|gb|EEZ34689.1| flagellar hook capping protein [Brucella sp. 83/13] gi|306274157|gb|EFM55973.1| flagellar basal body rod modification protein [Brucella sp. BO1] gi|306404776|gb|EFM61070.1| flagellar basal body rod modification protein [Brucella sp. NF 2653] Length = 137 Score = 115 bits (289), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 55/111 (49%), Positives = 82/111 (73%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79 K ++ D+FLKLL+TQ+++QDPT+PM ++ V+QLA FS +EQSVQMNS L+ L+ + +L Sbjct: 27 KASVDYDSFLKLLVTQMQNQDPTQPMDPTQYVSQLATFSNVEQSVQMNSKLETLIANTSL 86 Query: 80 AQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 QA +IG+ +T+ADGSISGVV ++ + S+G+ A D + I G+RIS Sbjct: 87 TQAEGWIGRTLTSADGSISGVVKSVTIQSSGMLAELEDGKTLTIGEGVRIS 137 >gi|306841281|ref|ZP_07473992.1| flagellar basal body rod modification protein [Brucella sp. BO2] gi|306288683|gb|EFM60014.1| flagellar basal body rod modification protein [Brucella sp. BO2] Length = 137 Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 54/111 (48%), Positives = 82/111 (73%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79 K ++ D+FLKLL+TQ+++QDPT+PM ++ V+QLA FS +EQSVQMNS L+ L+ + +L Sbjct: 27 KASVDYDSFLKLLVTQMQNQDPTQPMDPTQYVSQLATFSNVEQSVQMNSKLETLIANTSL 86 Query: 80 AQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 QA +IG+ +T+ADGSI+GVV ++ + S+G+ A D + I G+RIS Sbjct: 87 TQAEGWIGRTLTSADGSITGVVKSVTIQSSGMLAELEDGKTLTIGEGVRIS 137 >gi|239834422|ref|ZP_04682750.1| flagellar basal body rod modification protein [Ochrobactrum intermedium LMG 3301] gi|239822485|gb|EEQ94054.1| flagellar basal body rod modification protein [Ochrobactrum intermedium LMG 3301] Length = 136 Score = 114 bits (284), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 54/114 (47%), Positives = 84/114 (73%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 + +K ++ ++FLKLL+TQ+++QDPT+PM A++ V+QLA FS +EQ+VQMNS L+ L+ + Sbjct: 23 AANKASVDYNSFLKLLVTQMQNQDPTQPMDATQYVSQLATFSNVEQAVQMNSKLETLIAN 82 Query: 77 NNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 +L QA +IG+ +TNADGSISGVV ++ + S G+ A D + I G++IS Sbjct: 83 TSLTQAEGWIGRTLTNADGSISGVVKSVTIQSNGMLAELEDGKTLMIGAGVKIS 136 >gi|153011503|ref|YP_001372717.1| flagellar basal body rod modification protein [Ochrobactrum anthropi ATCC 49188] gi|151563391|gb|ABS16888.1| flagellar hook capping protein [Ochrobactrum anthropi ATCC 49188] Length = 136 Score = 114 bits (284), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 54/111 (48%), Positives = 82/111 (73%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79 K ++ ++FLKLL+TQ+++QDPT+PM A++ V+QLA FS +EQ+VQMNS L+ L+ + +L Sbjct: 26 KASVDYNSFLKLLVTQMQNQDPTQPMDATQYVSQLATFSNVEQAVQMNSKLETLIANTSL 85 Query: 80 AQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 QA +IG+ +TNADGSISGVV ++ + S G+ A D + I G++IS Sbjct: 86 TQAEGWIGRTLTNADGSISGVVKSVTIQSNGMLAELEDGKTLMIGAGVKIS 136 >gi|260466598|ref|ZP_05812786.1| flagellar hook capping protein [Mesorhizobium opportunistum WSM2075] gi|259029604|gb|EEW30892.1| flagellar hook capping protein [Mesorhizobium opportunistum WSM2075] Length = 135 Score = 111 bits (277), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 50/103 (48%), Positives = 80/103 (77%) Query: 27 AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYI 86 +FLKLLI ++K+QDPT+PM +++ VAQLA FSQ+EQSVQ N+ L+++++S+ L+QA + I Sbjct: 29 SFLKLLIAEMKNQDPTKPMDSTQYVAQLATFSQVEQSVQTNTKLEQIMQSSALSQADAII 88 Query: 87 GKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129 G+ IT+ADG +G V ++ ++S GL A+ D T++P+ G+ I Sbjct: 89 GRTITSADGKTTGTVASVTLASNGLIAVLQDGTQVPVGAGVSI 131 >gi|296445191|ref|ZP_06887151.1| flagellar hook capping protein [Methylosinus trichosporium OB3b] gi|296257365|gb|EFH04432.1| flagellar hook capping protein [Methylosinus trichosporium OB3b] Length = 134 Score = 110 bits (274), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 53/108 (49%), Positives = 78/108 (72%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82 LG D FL LL+T++++QDPT P+ +++ V+QLA FS +EQ V+ N TL +L S +L QA Sbjct: 27 LGYDQFLTLLVTEMQNQDPTNPVDSTQTVSQLASFSAVEQQVKTNDTLTSMLASQSLTQA 86 Query: 83 SSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 S+IGK +T+ADGS+SGVV ++ + S+ TA D + I +TTGI +S Sbjct: 87 QSFIGKTVTSADGSVSGVVASVTIGSSSQTATLTDGSTIDLTTGITVS 134 >gi|110632635|ref|YP_672843.1| flagellar basal body rod modification protein [Mesorhizobium sp. BNC1] gi|110283619|gb|ABG61678.1| flagellar hook capping protein [Chelativorans sp. BNC1] Length = 129 Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 56/130 (43%), Positives = 90/130 (69%), Gaps = 1/130 (0%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 M ++T V T Q + + +T+ +FL+LL+ Q+K+QDPT PM++++ VAQLA FSQ+ Sbjct: 1 MNVST-VTSTPQNQQTASAPQTVDYQSFLRLLVAQMKNQDPTSPMESTDYVAQLATFSQV 59 Query: 61 EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120 EQSVQMNS L+++L ++ L+QA IG+ IT+ADGS++G+V +++ S G+ A E Sbjct: 60 EQSVQMNSKLEQILAASALSQAGGVIGREITSADGSVTGIVKEVKLYSDGVIAKLESGQE 119 Query: 121 IPITTGIRIS 130 + + G+ IS Sbjct: 120 VVVGPGVVIS 129 >gi|218680426|ref|ZP_03528323.1| flagellar basal body rod modification protein [Rhizobium etli CIAT 894] Length = 112 Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 51/97 (52%), Positives = 73/97 (75%) Query: 35 QIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNAD 94 Q+K+QDPT+PMKASEQVAQLA FSQ+EQ+VQ N+ L LL S++L QASSY+GK + +AD Sbjct: 2 QMKNQDPTDPMKASEQVAQLATFSQVEQTVQTNTKLDTLLASSSLTQASSYVGKYMESAD 61 Query: 95 GSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 G++ G + +++V S G+ A T D I + GI +++ Sbjct: 62 GTVKGTIESVKVYSDGIIATTTDGGNILVQAGITVAD 98 >gi|319781660|ref|YP_004141136.1| flagellar hook capping protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167548|gb|ADV11086.1| flagellar hook capping protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 135 Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 52/129 (40%), Positives = 91/129 (70%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 +++ T + + + S SK + +FLKLLI ++K+QDPT+PM +++ VAQLA FSQ+ Sbjct: 3 VDMTTTIPTGANQATASTSKTAVDYQSFLKLLIAEMKNQDPTKPMDSTQYVAQLATFSQV 62 Query: 61 EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120 EQSVQ N+ L ++++S+ L+QA + IG++IT+ADG +G V +++++S GL A+ + TE Sbjct: 63 EQSVQTNTKLNQIMQSSALSQADALIGRSITSADGLTTGTVASVRLASNGLIAVLQNGTE 122 Query: 121 IPITTGIRI 129 + + G+ + Sbjct: 123 VAVGPGVSV 131 >gi|150395508|ref|YP_001325975.1| flagellar basal body rod modification protein [Sinorhizobium medicae WSM419] gi|150027023|gb|ABR59140.1| flagellar hook capping protein [Sinorhizobium medicae WSM419] Length = 138 Score = 106 bits (265), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 49/117 (41%), Positives = 82/117 (70%) Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72 E + S TL ++FLKLL+ Q+K+QDPT+PM A++Q+AQLA FSQ+EQ+++ N L+ Sbjct: 21 ESAGDASAATLNYESFLKLLVAQMKNQDPTQPMDATQQIAQLATFSQVEQTIKTNKNLES 80 Query: 73 LLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129 LL+ +L++A + IG+ +T+ADG +GVV +++ S G+ A+ E+ I G+++ Sbjct: 81 LLQRTSLSEADAVIGRTVTSADGKTTGVVKEVKLYSDGIIAVLDTGKELVIGPGVKV 137 >gi|325291967|ref|YP_004277831.1| flagellar basal body rod modification protein [Agrobacterium sp. H13-3] gi|325059820|gb|ADY63511.1| flagellar basal body rod modification protein [Agrobacterium sp. H13-3] Length = 156 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 51/117 (43%), Positives = 80/117 (68%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74 S KS +L D+FLKLLI Q+K+QDPT PM A +Q++QLA FSQ+EQ+++ N+ L+ +L Sbjct: 21 SNDKSAASLNYDSFLKLLIAQMKNQDPTSPMDAGQQMSQLASFSQVEQTIKTNTHLKSML 80 Query: 75 KSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 ++ L +AS +GK + +AD ++GVV ++V S G+ AIT ++ + G+ SN Sbjct: 81 QAEALTRASDLVGKTVKSADDKVTGVVKEVEVYSDGVVAITEAGDKVLLQAGVTFSN 137 >gi|15887924|ref|NP_353605.1| flagellar basal body rod modification protein [Agrobacterium tumefaciens str. C58] gi|15155520|gb|AAK86390.1| hook formation protein [Agrobacterium tumefaciens str. C58] Length = 157 Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 50/117 (42%), Positives = 80/117 (68%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74 S K+ +L D+FLKLLI Q+K+QDPT PM A +Q++QLA FSQ+EQ+++ N+ L+ +L Sbjct: 21 SSDKNAASLNYDSFLKLLIAQMKNQDPTSPMDAGQQMSQLASFSQVEQTIKTNTHLKSML 80 Query: 75 KSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 ++ L +AS +GK + +AD ++GVV +QV S G+ A+T ++ + G+ SN Sbjct: 81 QAEALTRASDLVGKTVMSADDKVTGVVKEVQVFSDGIVAVTEAGDKVLLQAGVVFSN 137 >gi|170744548|ref|YP_001773203.1| flagellar basal body rod modification protein [Methylobacterium sp. 4-46] gi|168198822|gb|ACA20769.1| flagellar hook capping protein [Methylobacterium sp. 4-46] Length = 142 Score = 103 bits (257), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 50/114 (43%), Positives = 80/114 (70%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 SK+ +L DAFL+LL+TQ+K+QDPT+PM ++ + +LA FS++EQS +MN+ L LL S Sbjct: 29 SKTATSLNTDAFLQLLLTQLKNQDPTKPMDSTAYMGELATFSEVEQSTKMNNKLDALLSS 88 Query: 77 NNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 N L+QA S IG+ T+ DG I+GVV ++++++ G A D ++ + G+ +S Sbjct: 89 NYLSQAESAIGRTATSDDGKITGVVASVKITTDGPLATLKDGRQLLLGNGVSLS 142 >gi|15964437|ref|NP_384790.1| flagellar basal body rod modification protein [Sinorhizobium meliloti 1021] gi|307311579|ref|ZP_07591220.1| flagellar hook capping protein [Sinorhizobium meliloti BL225C] gi|307318934|ref|ZP_07598365.1| flagellar hook capping protein [Sinorhizobium meliloti AK83] gi|10998533|gb|AAG25963.1|AF300968_5 FlgD [Sinorhizobium meliloti] gi|15073614|emb|CAC45256.1| Putative basal-body rod modification protein [Sinorhizobium meliloti 1021] gi|306895348|gb|EFN26103.1| flagellar hook capping protein [Sinorhizobium meliloti AK83] gi|306899596|gb|EFN30225.1| flagellar hook capping protein [Sinorhizobium meliloti BL225C] Length = 138 Score = 103 bits (256), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 48/109 (44%), Positives = 77/109 (70%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78 S TL ++FLKLL+ Q+K+QDPT+PM A++Q+AQLA FSQ+EQ+++ N L+ LL+ Sbjct: 27 SAATLNYESFLKLLVAQMKNQDPTQPMDATQQIAQLATFSQVEQTIKTNKNLESLLQRTA 86 Query: 79 LAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGI 127 L++A + IG+ +T+ADG +GVV +++ S G+ A+ E+ I G+ Sbjct: 87 LSEADAVIGRTVTSADGKTTGVVKEVKLYSDGIIAVLDTGKELVIGPGV 135 >gi|218671388|ref|ZP_03521058.1| flagellar basal body rod modification protein [Rhizobium etli GR56] Length = 159 Score = 100 bits (250), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 57/115 (49%), Positives = 85/115 (73%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 ++ K TL D FL+LLI Q+K+QDPT+PM ASEQ++QLA FSQ+EQ++Q N+ L LL S Sbjct: 35 AQKKATLNYDNFLQLLIAQMKNQDPTDPMDASEQMSQLASFSQVEQTIQTNTKLDTLLSS 94 Query: 77 NNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 ++L QASSY+GK + +ADG++ G V +++V S G+ A T D +I + GI +++ Sbjct: 95 SSLTQASSYVGKYMESADGTVKGTVESVKVYSDGIIATTTDGGKILVQAGITVAD 149 >gi|218662878|ref|ZP_03518808.1| flagellar basal body rod modification protein [Rhizobium etli IE4771] Length = 146 Score = 100 bits (249), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 57/112 (50%), Positives = 83/112 (74%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79 K TL D FL+LLI Q+K+QDPT+PM ASEQ++QLA FSQ+EQ++Q N+ L LL S++L Sbjct: 23 KATLNYDNFLQLLIAQMKNQDPTDPMDASEQMSQLASFSQVEQTIQTNTKLDTLLSSSSL 82 Query: 80 AQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 QASSY+GK + +ADG++ G V +++V S G+ A T D +I + GI +++ Sbjct: 83 TQASSYVGKYMESADGTVKGTVESVKVYSDGIIATTTDGGKILVQAGITVAD 134 >gi|163850128|ref|YP_001638171.1| flagellar basal body rod modification protein [Methylobacterium extorquens PA1] gi|218528732|ref|YP_002419548.1| flagellar basal body rod modification protein [Methylobacterium chloromethanicum CM4] gi|163661733|gb|ABY29100.1| flagellar hook capping protein [Methylobacterium extorquens PA1] gi|218521035|gb|ACK81620.1| flagellar hook capping protein [Methylobacterium chloromethanicum CM4] Length = 138 Score = 100 bits (248), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 49/105 (46%), Positives = 73/105 (69%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSY 85 D FL LL+ Q+++QDPT+PM ++E V QLA FSQ+EQ+ + N L LL S+ L QA + Sbjct: 34 DTFLTLLMAQLQNQDPTKPMDSTEYVGQLATFSQVEQATKTNQKLDSLLTSSFLNQADAI 93 Query: 86 IGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 IG+++T+ADG ISG V +++V+ G+ A D E+ + +GI IS Sbjct: 94 IGRSLTSADGLISGTVQSVRVTGDGVMAKLTDGREMLLASGISIS 138 >gi|222084890|ref|YP_002543419.1| flagellar basal-body rod protein [Agrobacterium radiobacter K84] gi|221722338|gb|ACM25494.1| flagellar basal-body rod protein [Agrobacterium radiobacter K84] Length = 158 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 48/103 (46%), Positives = 73/103 (70%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIG 87 FLKLLI Q+K QDPT+PM A++Q++QLA FSQ+EQ +Q NS L+ +L++ ++QAS YIG Sbjct: 33 FLKLLIAQMKTQDPTDPMDATQQISQLASFSQVEQQIQTNSHLETVLQNQWISQASDYIG 92 Query: 88 KNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 K I +ADG+ +G + + V S G+ A T +I + G+ ++ Sbjct: 93 KEIMSADGTTTGTIKEVTVYSDGIIAQTEAGDKILLQAGVTVA 135 >gi|170748120|ref|YP_001754380.1| flagellar basal body rod modification protein [Methylobacterium radiotolerans JCM 2831] gi|170654642|gb|ACB23697.1| flagellar hook capping protein [Methylobacterium radiotolerans JCM 2831] Length = 139 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 47/91 (51%), Positives = 69/91 (75%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82 L D FLKLL+ Q+K+Q+PT+PMK+++ +AQLA FSQ+EQSV MNS L LL S+ L+QA Sbjct: 32 LNYDNFLKLLLAQMKNQNPTDPMKSTDYMAQLATFSQVEQSVNMNSKLDALLTSSTLSQA 91 Query: 83 SSYIGKNITNADGSISGVVNAIQVSSTGLTA 113 +G +T+AD +++G V +++V+S GL A Sbjct: 92 GGLVGHTVTSADKTLTGTVVSVEVASNGLLA 122 >gi|323136996|ref|ZP_08072076.1| flagellar hook capping protein [Methylocystis sp. ATCC 49242] gi|322397757|gb|EFY00279.1| flagellar hook capping protein [Methylocystis sp. ATCC 49242] Length = 136 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 74/105 (70%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSY 85 +AFL+LL+T+++HQDP +PM ++ V QLA F+ +EQ++Q NS L L +++ L+QASS Sbjct: 32 NAFLQLLVTELRHQDPMKPMDPTQTVTQLATFASVEQAIQTNSLLASLNENSALSQASSL 91 Query: 86 IGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 IG+ +++ADG SGVV ++ + G+ A+ D ++ + G+ IS Sbjct: 92 IGRTVSSADGKTSGVVKSVMIDDGGMIAVLADGRKVLLGPGVTIS 136 >gi|255610098|ref|XP_002539132.1| conserved hypothetical protein [Ricinus communis] gi|223508457|gb|EEF23251.1| conserved hypothetical protein [Ricinus communis] Length = 228 Score = 98.2 bits (243), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 48/103 (46%), Positives = 73/103 (70%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIG 87 FL+LLI Q+++QDPT+PM AS+Q++QLA FSQ+EQ +Q NS L+ +L++ ++QAS YIG Sbjct: 33 FLQLLIAQMQNQDPTDPMDASQQISQLASFSQVEQQIQTNSHLETVLQNQWISQASDYIG 92 Query: 88 KNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 K I +ADG +G + + V + G+ A T +I I G+ I+ Sbjct: 93 KQIMSADGKTTGTIKEVTVYTDGIIAQTDAGDKILIQAGVTIA 135 >gi|188579930|ref|YP_001923375.1| flagellar basal body rod modification protein [Methylobacterium populi BJ001] gi|179343428|gb|ACB78840.1| flagellar hook capping protein [Methylobacterium populi BJ001] Length = 138 Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 48/105 (45%), Positives = 73/105 (69%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSY 85 D FL+LL+ Q+++QDPT+PM ++E V QLA FSQ+EQ+ + N L LL S+ L QA + Sbjct: 34 DTFLQLLMAQLQNQDPTKPMDSTEYVGQLASFSQVEQATKTNQKLDSLLASSFLNQADAI 93 Query: 86 IGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 IG++IT+ADG +G V +++V+ G+ A D E+ + +GI IS Sbjct: 94 IGRSITSADGLTTGTVQSVRVTGDGVMAKLTDGREMLLASGISIS 138 >gi|254559273|ref|YP_003066368.1| Basal body rod modification protein FlgD [Methylobacterium extorquens DM4] gi|254266551|emb|CAX22315.1| FlgD ( BASAL-BODY ROD MODIFICATION PROTEIN)/hook formation protein [Methylobacterium extorquens DM4] Length = 138 Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 48/105 (45%), Positives = 72/105 (68%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSY 85 D FL LL+ Q+++QDPT+PM ++E V QLA FSQ+EQ+ + N L LL S+ L QA + Sbjct: 34 DTFLTLLMAQLQNQDPTKPMDSTEYVGQLATFSQVEQATKTNQKLDSLLTSSFLNQADAI 93 Query: 86 IGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 IG+++T+ADG SG V +++V+ G+ A D E+ + +GI IS Sbjct: 94 IGRSLTSADGLTSGTVQSVRVTGDGVMAKLTDGREMLLASGISIS 138 >gi|240137262|ref|YP_002961731.1| FlgD (basal-body rod modification protein)/hook formation protein [Methylobacterium extorquens AM1] gi|240007228|gb|ACS38454.1| FlgD (basal-body rod modification protein)/hook formation protein [Methylobacterium extorquens AM1] Length = 135 Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 48/105 (45%), Positives = 72/105 (68%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSY 85 D FL LL+ Q+++QDPT+PM ++E V QLA FSQ+EQ+ + N L LL S+ L QA + Sbjct: 31 DTFLTLLMAQLQNQDPTKPMDSTEYVGQLATFSQVEQATKTNQKLDSLLTSSFLNQADAI 90 Query: 86 IGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 IG+++T+ADG SG V +++V+ G+ A D E+ + +GI IS Sbjct: 91 IGRSLTSADGLTSGTVQSVRVTGDGVMAKLTDGREMLLASGISIS 135 >gi|300024583|ref|YP_003757194.1| flagellar hook capping protein [Hyphomicrobium denitrificans ATCC 51888] gi|299526404|gb|ADJ24873.1| flagellar hook capping protein [Hyphomicrobium denitrificans ATCC 51888] Length = 136 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 44/106 (41%), Positives = 77/106 (72%) Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ 81 TL + FLKL++ Q+++QDP P +++ ++Q+A FS +EQ + N+ L +LL ++N++Q Sbjct: 26 TLNYNDFLKLMVAQLRNQDPLNPTDSTQYMSQIAQFSSVEQGINTNAKLDQLLVNSNISQ 85 Query: 82 ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGI 127 AS+ IG ++T+ADGS+SG+V ++++ STG TAI + E+ I G+ Sbjct: 86 ASTMIGLSLTSADGSVSGIVTSVRIDSTGSTAILNNGKEVRIDQGV 131 >gi|222147594|ref|YP_002548551.1| flagellar basal body rod modification protein [Agrobacterium vitis S4] gi|221734582|gb|ACM35545.1| hook formation protein [Agrobacterium vitis S4] Length = 151 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 43/106 (40%), Positives = 76/106 (71%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSY 85 ++FL+LLI Q+++QDPT+PM A+EQV+QLA +SQ+EQS++ N+ L+ +L++ L +A Sbjct: 44 NSFLQLLIAQLQNQDPTDPMSATEQVSQLATYSQVEQSIKTNTLLRSMLQAEALTRAGDI 103 Query: 86 IGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 +GK +T++DG +GVV+ ++V+ +T T + + TG+ S+ Sbjct: 104 VGKTVTSSDGETTGVVSNVKVADDAVTLTTSSGGTVELQTGVNFSS 149 >gi|209547951|ref|YP_002279868.1| flagellar basal body rod modification protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533707|gb|ACI53642.1| flagellar hook capping protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 147 Score = 94.7 bits (234), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 54/112 (48%), Positives = 83/112 (74%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79 K TL D FL+LLI Q+K+QDPT+P+ ASEQ++QLA FSQ+EQ++Q N+ L LL S++L Sbjct: 24 KATLNYDNFLQLLIAQMKNQDPTDPVDASEQMSQLASFSQVEQTIQTNTKLDTLLSSSSL 83 Query: 80 AQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 QASSY+GK + +ADG++ G + +++V S G+ A T + +I + GI +++ Sbjct: 84 TQASSYVGKYMESADGTVKGTIESVKVYSDGIIATTTNGGKILVQAGITVAD 135 >gi|182680452|ref|YP_001834598.1| flagellar basal body rod modification protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182636335|gb|ACB97109.1| flagellar hook capping protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 141 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 49/110 (44%), Positives = 73/110 (66%) Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ 81 T+ +FL+LL+ ++K+QDPT P ++ ++QLA FS +EQ VQ NS L LL +++L Q Sbjct: 32 TVDYSSFLQLLVAELKNQDPTSPTDPTQYMSQLASFSSVEQQVQTNSKLDSLLTASSLGQ 91 Query: 82 ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 A + IGK IT+ADGSISG V ++ VSS TA + ++ + GI I + Sbjct: 92 AETVIGKTITSADGSISGKVQSVTVSSGTATATLDNGGQVKLADGISIGS 141 >gi|118589961|ref|ZP_01547365.1| flagellar basal-body rod modification protein D [Stappia aggregata IAM 12614] gi|118437458|gb|EAV44095.1| flagellar basal-body rod modification protein D [Stappia aggregata IAM 12614] Length = 131 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 54/127 (42%), Positives = 85/127 (66%), Gaps = 5/127 (3%) Query: 7 VNPTQQEFSKSKSKK--TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 V+ T+ S + ++K T+ D FL L++ Q+++QDPT PM ASEQ+AQLA FSQ+EQS+ Sbjct: 7 VSATEGAASPATAQKQLTVDYDTFLHLMMAQMQNQDPTNPMDASEQLAQLASFSQVEQSI 66 Query: 65 QMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE-IPI 123 Q N+ L+ LL + + Q IG+ +T+A+G+ +GVV ++V S G T + +DN + I + Sbjct: 67 QTNAKLETLLTNLSFGQVDDLIGRTVTDANGT-TGVVEKVEVYSDG-TVLALDNGKGILL 124 Query: 124 TTGIRIS 130 G+ IS Sbjct: 125 GPGVTIS 131 >gi|254503888|ref|ZP_05116039.1| flagellar hook capping protein [Labrenzia alexandrii DFL-11] gi|222439959|gb|EEE46638.1| flagellar hook capping protein [Labrenzia alexandrii DFL-11] Length = 134 Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 47/110 (42%), Positives = 80/110 (72%), Gaps = 3/110 (2%) Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ 81 T+ +AFL+L++TQ+K+QDPT+PM ASEQ++QLA FSQ+EQ++Q NS L+ +L + + Q Sbjct: 27 TVDYNAFLQLMMTQMKNQDPTKPMDASEQLSQLATFSQVEQAIQTNSKLETMLTNMSFGQ 86 Query: 82 ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE-IPITTGIRIS 130 IG+ +T+++G+ +GVV +++ S G T + +DN + + + G+ IS Sbjct: 87 VDDLIGRTVTDSNGT-TGVVEKVEIYSDG-TILGLDNGKGVLLGPGVSIS 134 >gi|121602800|ref|YP_989378.1| flagellar hook capping protein [Bartonella bacilliformis KC583] gi|120614977|gb|ABM45578.1| flagellar hook capping protein [Bartonella bacilliformis KC583] Length = 190 Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 48/113 (42%), Positives = 75/113 (66%), Gaps = 4/113 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 QQ+ + +KK D F+KLL+ Q+K+QDPT PM ++E VAQLA FS +EQ+++MN L Sbjct: 19 QQDTPDTGAKKNTDYDTFVKLLVAQMKNQDPTNPMNSTEFVAQLASFSMVEQAIKMNDKL 78 Query: 71 QELLKSNNLAQASSYIGKNI--TNADGS-ISGVVNAIQVSSTGLTAITVDNTE 120 +++L + ++ A Y+GK I + DG+ I G V ++ + S G+ A T+DN E Sbjct: 79 EQVLANGAISGAEGYVGKYIQFEDKDGNIIEGYVKSVDIYSDGIVA-TLDNGE 130 >gi|319898661|ref|YP_004158754.1| flagellar hook capping protein [Bartonella clarridgeiae 73] gi|319402625|emb|CBI76170.1| Flagellar hook capping protein (fragment) [Bartonella clarridgeiae 73] Length = 169 Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 49/115 (42%), Positives = 75/115 (65%), Gaps = 5/115 (4%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78 +KK D F+KLL+ Q+K+QDPT+PM ++E VAQLA FS +EQ+++MN TL ++L + + Sbjct: 25 AKKNADYDTFIKLLVAQMKNQDPTKPMDSTEFVAQLASFSSVEQAIKMNETLTQMLSNGS 84 Query: 79 LAQASSYIGKNI---TNADGSISGVVNAIQVSSTGLTAITVDNTE-IPITTGIRI 129 + A Y+GK I D I G V +I + S G+ A T+DN E + I G+++ Sbjct: 85 INGAEGYVGKYIQFTDEKDKIIEGYVVSIDIYSDGIVA-TLDNGEKVVIGPGVKV 138 >gi|319405426|emb|CBI79045.1| Flagellar hook capping protein [Bartonella sp. AR 15-3] Length = 169 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 49/115 (42%), Positives = 77/115 (66%), Gaps = 5/115 (4%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78 +KK D F+KLL+ Q+K+QDPT+PM ++E VA LA FS +EQ+++MN TL ++L + + Sbjct: 25 AKKNADYDTFIKLLVAQMKNQDPTKPMDSTEFVAHLASFSSVEQAIKMNETLAQMLSNGS 84 Query: 79 LAQASSYIGKNI--TNADGS-ISGVVNAIQVSSTGLTAITVDNTE-IPITTGIRI 129 + A Y+GK I T+ G+ I G V +I + S G+ A T+DN E + I G+++ Sbjct: 85 INGAEGYVGKYIQFTDEKGTVIEGYVVSIDIYSDGIVA-TLDNGEKVVIGPGVKV 138 >gi|319406999|emb|CBI80636.1| Flagellar hook capping protein (fragment) [Bartonella sp. 1-1C] Length = 170 Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 48/115 (41%), Positives = 74/115 (64%), Gaps = 5/115 (4%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78 +KK D F+KLL+ Q+K+QDPT+PM ++E V+QLA FS +EQ+++MN TL ++L + Sbjct: 26 AKKNADYDMFIKLLVAQMKNQDPTKPMDSTEFVSQLASFSSVEQAIKMNETLSQMLSNGL 85 Query: 79 LAQASSYIGKNI---TNADGSISGVVNAIQVSSTGLTAITVDNTE-IPITTGIRI 129 + A Y+GK I D I G V +I + S G+ A T+DN E + I G+++ Sbjct: 86 INGAEGYVGKYIQFTDEKDKVIEGYVVSIDIYSDGIVA-TLDNGEKVVIGPGVKV 139 >gi|304392488|ref|ZP_07374428.1| flagellar hook capping protein [Ahrensia sp. R2A130] gi|303295118|gb|EFL89478.1| flagellar hook capping protein [Ahrensia sp. R2A130] Length = 131 Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 42/105 (40%), Positives = 70/105 (66%), Gaps = 2/105 (1%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79 K + D+FLKLL+ ++++QDPT+PM++SE VAQLA FS +EQS+Q N+ L LL N L Sbjct: 23 KAQVDYDSFLKLLVAELENQDPTKPMESSEFVAQLATFSGVEQSIQTNTKLDALLAGNVL 82 Query: 80 AQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPIT 124 QA + IG+ +T D ++G+V+++ + S + + D + ++ Sbjct: 83 GQAGTMIGRTVTAGD--VTGLVDSVAIESGSASLVLDDGRRVALS 125 >gi|319403983|emb|CBI77571.1| hypothetical protein BARRO_30152 [Bartonella rochalimae ATCC BAA-1498] Length = 169 Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 48/115 (41%), Positives = 74/115 (64%), Gaps = 5/115 (4%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78 +KK D F+KLL+ Q+K+QDPT+PM ++E V+QLA FS +EQ+++MN TL ++L + Sbjct: 25 AKKNADYDMFIKLLVAQMKNQDPTKPMDSTEFVSQLASFSSVEQAIKMNETLSQMLSNGL 84 Query: 79 LAQASSYIGKNI---TNADGSISGVVNAIQVSSTGLTAITVDNTE-IPITTGIRI 129 + A Y+GK I D I G V +I + S G+ A T+DN E + I G+++ Sbjct: 85 INGAEGYVGKYIQFTDEKDKVIEGYVVSIDIYSDGIVA-TLDNGEKVVIGPGVKV 138 >gi|312115275|ref|YP_004012871.1| flagellar hook capping protein [Rhodomicrobium vannielii ATCC 17100] gi|311220404|gb|ADP71772.1| flagellar hook capping protein [Rhodomicrobium vannielii ATCC 17100] Length = 100 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 42/100 (42%), Positives = 68/100 (68%) Query: 31 LLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNI 90 +L+ Q+++QDPT+P ++ ++QLA FS +EQ V NS L LL ++Q +S IGK + Sbjct: 1 MLVAQLQNQDPTDPTDPTQFISQLASFSSVEQLVNANSRLDTLLTQTAISQGASLIGKTV 60 Query: 91 TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 T+ADG+ISG + +I++SS+G A D + I + +G+ IS Sbjct: 61 TSADGTISGTIASIEISSSGSVATLADGSTIELASGVVIS 100 >gi|90418360|ref|ZP_01226272.1| flagellar hook capping protein FlgD [Aurantimonas manganoxydans SI85-9A1] gi|90338032|gb|EAS51683.1| flagellar hook capping protein FlgD [Aurantimonas manganoxydans SI85-9A1] Length = 134 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 45/125 (36%), Positives = 72/125 (57%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 T Q S + K + DAFLKLL+ ++ +QDP P ++E VAQ A FS +EQ++ Sbjct: 9 TSATAAQTGISAATQKTGMDYDAFLKLLVAEMSNQDPLNPTDSTEYVAQFASFSSVEQAI 68 Query: 65 QMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPIT 124 Q N L ++ + L QA+S IG+ T+ADG++SG V A++ + + AI +P+ Sbjct: 69 QTNKKLDSMMTVSALTQANSLIGQTATSADGTLSGKVAAVRAVNGVVEAILESGDSLPLI 128 Query: 125 TGIRI 129 +G + Sbjct: 129 SGTTV 133 >gi|328545486|ref|YP_004305595.1| flagellar hook capping protein [polymorphum gilvum SL003B-26A1] gi|326415227|gb|ADZ72290.1| Flagellar hook capping protein [Polymorphum gilvum SL003B-26A1] Length = 131 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 45/110 (40%), Positives = 79/110 (71%), Gaps = 3/110 (2%) Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ 81 TL +AFL+L++ Q+K+QDPT+P+ +++Q+AQLA FSQ+EQ+++ N+ L+ +L + + Q Sbjct: 24 TLDYNAFLQLMLAQMKNQDPTDPVDSTQQLAQLATFSQVEQAMKTNTKLEAMLTNMSFGQ 83 Query: 82 ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE-IPITTGIRIS 130 IG+ T+A G+ +GVV +++V S G T + +DN + I + G++IS Sbjct: 84 VDDLIGRTATDAIGT-TGVVTSVEVYSDG-TLLGLDNGKGILLGPGVKIS 131 >gi|220932519|ref|YP_002509427.1| flagellar hook capping protein [Halothermothrix orenii H 168] gi|219993829|gb|ACL70432.1| flagellar hook capping protein [Halothermothrix orenii H 168] Length = 142 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 44/112 (39%), Positives = 66/112 (58%), Gaps = 4/112 (3%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82 L +DAF KLLITQ++HQDP +PM+ E +AQ+A FS +EQ MN L ++ +L+Q Sbjct: 31 LDKDAFFKLLITQLRHQDPLKPMEDREFIAQMAEFSSLEQMANMNENLSTFMRMESLSQG 90 Query: 83 SSYIGKNITNADGS----ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 ++ IG+N+ D +SG V + S L A ++ +IP+ T IS Sbjct: 91 AALIGRNVEYVDSQSGRILSGKVTKVVYESGTLYAHLDNDVKIPVDTITSIS 142 >gi|319409164|emb|CBI82808.1| Flagellar hook capping protein [Bartonella schoenbuchensis R1] Length = 160 Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 45/115 (39%), Positives = 72/115 (62%), Gaps = 3/115 (2%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77 ++KK D F+KLL+ Q+ +QDPT PM ++E VAQLA FS +EQ+++ N L ++L + Sbjct: 26 EAKKDTDFDTFIKLLVAQMNNQDPTNPMDSTEFVAQLASFSVVEQTIKTNDKLDQILSNG 85 Query: 78 NLAQASSYIGKNI--TNADGS-ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129 ++ A Y+GK I +ADG I G V +I + + G+ A +N ++ I GI + Sbjct: 86 SINGAEGYVGKYIQFEDADGKIIEGYVESIDIYTDGMVATLDNNEKVLIGPGITV 140 >gi|158422276|ref|YP_001523568.1| flagellar basal body rod modification protein [Azorhizobium caulinodans ORS 571] gi|158329165|dbj|BAF86650.1| flagellar hook assembly scaffolding protein [Azorhizobium caulinodans ORS 571] Length = 138 Score = 83.6 bits (205), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 42/105 (40%), Positives = 69/105 (65%), Gaps = 1/105 (0%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIG 87 FL+LL+ Q+K+QDPT+PM ++ ++QLA FSQ+EQ N L LL ++ L A + IG Sbjct: 34 FLQLLVAQLKNQDPTQPMDSTAYLSQLASFSQVEQQTNTNKKLDTLLSASALQSADAAIG 93 Query: 88 KNITNADGSISGVVNAIQVSSTGLTAITV-DNTEIPITTGIRISN 131 K +T+ADG++SG V ++ + S G T+ D +++ + + + IS Sbjct: 94 KTVTSADGTVSGTVASVSLVSGGAPIATLKDGSKVTLDSSVSISG 138 >gi|217976245|ref|YP_002360392.1| flagellar basal body rod modification protein [Methylocella silvestris BL2] gi|217501621|gb|ACK49030.1| flagellar hook capping protein [Methylocella silvestris BL2] Length = 135 Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 46/104 (44%), Positives = 69/104 (66%), Gaps = 5/104 (4%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIG 87 FL+LLIT++K+QDPT P ++ ++QLA FS +EQ V+ NS L LL + QA + IG Sbjct: 34 FLQLLITELKNQDPTSPTDPTQYMSQLASFSSVEQQVKTNSALDALLAT----QAGALIG 89 Query: 88 KNITNADGSISGVVNAIQVSSTG-LTAITVDNTEIPITTGIRIS 130 K T+ADG ISGV+ ++ S+ G +TA + + I + +G+ IS Sbjct: 90 KTATSADGKISGVIASVTTSAGGDVTATLKNGSAITLGSGVTIS 133 >gi|114706623|ref|ZP_01439524.1| flagellar basal-body rod modification protein D [Fulvimarina pelagi HTCC2506] gi|114538015|gb|EAU41138.1| flagellar basal-body rod modification protein D [Fulvimarina pelagi HTCC2506] Length = 136 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 38/105 (36%), Positives = 66/105 (62%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSY 85 DAFL+LL+ Q+K+QDP P +++E +AQ A F+ +EQS+Q N+ L+ ++ + L QA + Sbjct: 32 DAFLQLLVAQMKNQDPLNPAESTEYIAQFATFANVEQSIQTNTRLESMMTVSALTQADAL 91 Query: 86 IGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 IG+ +T+ DG+ G V +I+ G+ A I + G+ ++ Sbjct: 92 IGRTLTSLDGATRGTVTSIRAVDGGIQATIEGGETIMLGDGVSVA 136 >gi|323703175|ref|ZP_08114828.1| flagellar hook capping protein [Desulfotomaculum nigrificans DSM 574] gi|323531834|gb|EGB21720.1| flagellar hook capping protein [Desulfotomaculum nigrificans DSM 574] Length = 138 Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 40/105 (38%), Positives = 61/105 (58%), Gaps = 2/105 (1%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74 S K KTL +DAFL++++ Q+K+QDPT PM + + Q+A F+ +EQ +NS ++L Sbjct: 17 SPRKPVKTLDKDAFLQIMVAQLKYQDPTSPMDNDKMIEQIAQFTTLEQITNLNSNFEKLY 76 Query: 75 KSNNLAQASSYIGKNIT--NADGSISGVVNAIQVSSTGLTAITVD 117 L SS IG +T N D +ISG V + + +TG+ D Sbjct: 77 SLQQLGYGSSLIGYGVTLQNGDENISGTVQKVTMDATGVKIWVAD 121 >gi|323490148|ref|ZP_08095368.1| flagellar basal body rod modification protein [Planococcus donghaensis MPA1U2] gi|323396196|gb|EGA89022.1| flagellar basal body rod modification protein [Planococcus donghaensis MPA1U2] Length = 143 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 45/121 (37%), Positives = 74/121 (61%), Gaps = 6/121 (4%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74 +K + LGQDAFLK+L+TQ+KHQDP EP+K +E + Q+A F+ +EQ +N T+ + + Sbjct: 18 TKEEPTNALGQDAFLKILVTQMKHQDPMEPLKDTEFIGQMAQFTSLEQLTNLNKTMTQFV 77 Query: 75 K---SNNLAQASSYIGKNIT--NADGSISGVVNAIQVSSTGLTA-ITVDNTEIPITTGIR 128 S++LA + IG ++ + GS G+V A+ + L A + +T++PI + I Sbjct: 78 SNQGSSSLADYAHLIGTSVKWESETGSGEGMVKALSSKNGELLAELEGSDTKVPIASIIH 137 Query: 129 I 129 I Sbjct: 138 I 138 >gi|27381964|ref|NP_773493.1| flagellar basal body rod modification protein [Bradyrhizobium japonicum USDA 110] gi|27355134|dbj|BAC52118.1| hook formation protein [Bradyrhizobium japonicum USDA 110] Length = 140 Score = 76.6 bits (187), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 43/106 (40%), Positives = 68/106 (64%), Gaps = 3/106 (2%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIG 87 FL+LL+ ++K+QDPT PM S+ ++Q A S +EQ++Q N+ L LL S +L+QA IG Sbjct: 33 FLQLLVAEMKNQDPTNPMDTSQYMSQFAQLSTVEQAMQTNTKLDALLSSQSLSQADGLIG 92 Query: 88 KNI--TNADGS-ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 K + T+A G+ SG V +I ++S G A + T++ + G+ IS Sbjct: 93 KTVSFTDATGATFSGKVKSISINSDGSVATLENGTKVAVGPGLTIS 138 >gi|254473493|ref|ZP_05086890.1| flagellar hook capping protein [Pseudovibrio sp. JE062] gi|211957609|gb|EEA92812.1| flagellar hook capping protein [Pseudovibrio sp. JE062] Length = 152 Score = 76.6 bits (187), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 42/112 (37%), Positives = 70/112 (62%), Gaps = 4/112 (3%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82 L +AFL L + +K QDPT+P+ +E + QLA FS +EQS + N+ L +L+ +++ QA Sbjct: 29 LDYNAFLMLFMESLKSQDPTDPLDTAEYMGQLAQFSAVEQSTKTNTHLTAMLQQHSINQA 88 Query: 83 SSYIGK--NITNADG--SISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 ++ IG + NADG + +GV+ ++Q+ + G A D T++ + GI IS Sbjct: 89 NNLIGATVEVPNADGTETTTGVIKSVQILTDGSIATLEDGTKVALVPGIEIS 140 >gi|256750747|ref|ZP_05491632.1| flagellar hook capping protein [Thermoanaerobacter ethanolicus CCSD1] gi|256750330|gb|EEU63349.1| flagellar hook capping protein [Thermoanaerobacter ethanolicus CCSD1] Length = 131 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 51/130 (39%), Positives = 74/130 (56%), Gaps = 14/130 (10%) Query: 1 MEINTEVNPTQQEFSK-SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59 M+INT N T ++ + SK LG+D FLKLL+TQ+K+QDP PM E +AQLA FS Sbjct: 1 MDINTNYNITTVYTNRVTTSKDQLGKDDFLKLLVTQLKNQDPLNPMDDREFIAQLAQFST 60 Query: 60 MEQSVQMNSTLQELLKSNNLAQASSYIGKN----ITNADGSISGVVNAIQV--SSTGLTA 113 +EQ MNS++ N +A + IGKN IT+ +G+ V+ + V G Sbjct: 61 LEQMQNMNSSI-------NAIRAINLIGKNIYATITDNNGNSRTVIGKVDVVYKQNGEYF 113 Query: 114 ITVDNTEIPI 123 + V+ +IP+ Sbjct: 114 LEVNGIDIPL 123 >gi|307264874|ref|ZP_07546436.1| flagellar hook capping protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306920132|gb|EFN50344.1| flagellar hook capping protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 131 Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 50/131 (38%), Positives = 76/131 (58%), Gaps = 16/131 (12%) Query: 1 MEINTEVNPTQQEFSK-SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59 M+INT N T ++ + SK LG+D FLKLL+TQ+K+QDP +PM E +AQLA FS Sbjct: 1 MDINTNYNITTVYTNRVTTSKDQLGKDDFLKLLVTQLKNQDPLKPMDDREFIAQLAQFST 60 Query: 60 MEQSVQMNSTLQELLKSNNLAQASSYIGKN----ITNADG---SISGVVNAIQVSSTGLT 112 +EQ MNS+ N +A + IGKN IT+ +G +++G V+ + G Sbjct: 61 LEQMQNMNSSF-------NAVRAINLIGKNIYATITDNNGNSRTVTGKVDVV-YKQNGEY 112 Query: 113 AITVDNTEIPI 123 + V+ ++P+ Sbjct: 113 FLQVNGIDVPV 123 >gi|46579855|ref|YP_010663.1| basal-body rod modification protein FlgD [Desulfovibrio vulgaris str. Hildenborough] gi|120602679|ref|YP_967079.1| flagellar hook capping protein [Desulfovibrio vulgaris DP4] gi|46449271|gb|AAS95922.1| basal-body rod modification protein FlgD [Desulfovibrio vulgaris str. Hildenborough] gi|120562908|gb|ABM28652.1| flagellar hook capping protein [Desulfovibrio vulgaris DP4] gi|311234144|gb|ADP86998.1| flagellar hook capping protein [Desulfovibrio vulgaris RCH1] Length = 265 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 41/108 (37%), Positives = 62/108 (57%), Gaps = 6/108 (5%) Query: 3 INTEVNPTQQEFS---KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59 +N + + EF K LG+DAFL+LL+TQ+KHQDP PM E VAQLA F+ Sbjct: 5 VNNILGQAENEFQSAVKKSGNADLGKDAFLQLLVTQLKHQDPLNPMDDKEFVAQLAQFTS 64 Query: 60 MEQSVQMN---STLQELLKSNNLAQASSYIGKNITNADGSISGVVNAI 104 +EQ + +N +++ E K + A SYIGK++ + IS + + + Sbjct: 65 LEQLMGINTGVTSMNEAFKQQQMMNAVSYIGKDVLASGDQISKIKDGV 112 >gi|328948414|ref|YP_004365751.1| flagellar hook capping protein [Treponema succinifaciens DSM 2489] gi|328448738|gb|AEB14454.1| flagellar hook capping protein [Treponema succinifaciens DSM 2489] Length = 149 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 44/92 (47%), Positives = 60/92 (65%), Gaps = 8/92 (8%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77 K ++ LG+D FLKLLITQ+ +QDPT PM+ +E +AQ+A FS +EQ MN QE K N Sbjct: 35 KVQRDLGKDDFLKLLITQLSNQDPTSPMENTEFIAQMAQFSSLEQMTNMN---QEFAKMN 91 Query: 78 NL---AQASSYIGK--NITNADGSISGVVNAI 104 ++ +QA IGK +IT D +GVV A+ Sbjct: 92 SMLVSSQAVGTIGKTVDITLGDTKTTGVVEAV 123 >gi|56964027|ref|YP_175758.1| flagellar basal body rod modification protein [Bacillus clausii KSM-K16] gi|56910270|dbj|BAD64797.1| flagellar basal-body rod modification protein FlgD [Bacillus clausii KSM-K16] Length = 144 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 42/102 (41%), Positives = 64/102 (62%), Gaps = 6/102 (5%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNL 79 LGQDAFLKLLITQ+++QDP+ P++ E +AQLA FSQ+EQ ++NST++ + KS L Sbjct: 24 LGQDAFLKLLITQLQNQDPSNPIEDREFIAQLATFSQLEQLTKLNSTMEYMYYEQKSQQL 83 Query: 80 AQASSYIGKNIT--NADGSIS-GVVNAIQVSSTGLTAITVDN 118 S IGK++ N + V ++ S +G + +D+ Sbjct: 84 MALSELIGKSVEWLNEKEKVEQATVTGVKYSESGDLLVQIDD 125 >gi|326389476|ref|ZP_08211043.1| flagellar hook capping protein [Thermoanaerobacter ethanolicus JW 200] gi|325994481|gb|EGD52906.1| flagellar hook capping protein [Thermoanaerobacter ethanolicus JW 200] Length = 131 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 50/131 (38%), Positives = 75/131 (57%), Gaps = 16/131 (12%) Query: 1 MEINTEVNPTQQEFSK-SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59 M+INT N T ++ + SK LG+D FLKLL+TQ+K+QDP PM E +AQLA FS Sbjct: 1 MDINTNYNITTVYTNRVTTSKDQLGKDDFLKLLVTQLKNQDPLNPMDDREFIAQLAQFST 60 Query: 60 MEQSVQMNSTLQELLKSNNLAQASSYIGKN----ITNADG---SISGVVNAIQVSSTGLT 112 +EQ MNS+ N +A + IGKN IT+ +G +++G V+ + G Sbjct: 61 LEQMQNMNSSF-------NAVRAINLIGKNIYATITDNNGNSQTVTGKVDVV-YKQNGEY 112 Query: 113 AITVDNTEIPI 123 + V+ ++P+ Sbjct: 113 FLQVNGIDVPV 123 >gi|269836574|ref|YP_003318802.1| flagellar hook capping protein [Sphaerobacter thermophilus DSM 20745] gi|269785837|gb|ACZ37980.1| flagellar hook capping protein [Sphaerobacter thermophilus DSM 20745] Length = 150 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 42/105 (40%), Positives = 64/105 (60%), Gaps = 5/105 (4%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82 LG+ FL LL Q+++QDP PM+ +E +AQLA + +EQ QMN TL L++ + LAQ Sbjct: 28 LGKQEFLMLLTAQLRNQDPLRPMEDTEFIAQLAQLNSLEQMQQMNETLSTLVEMSVLAQT 87 Query: 83 SSYIGKNITNAD----GSISGVVNAIQVSSTGLTAITVDNTEIPI 123 +S IG+++T D G I GVV+ + + G + V T +P+ Sbjct: 88 ASLIGRHVTALDPSGGGVIKGVVSDVTIHE-GTPVLNVGGTAVPL 131 >gi|317129202|ref|YP_004095484.1| flagellar hook capping protein [Bacillus cellulosilyticus DSM 2522] gi|315474150|gb|ADU30753.1| flagellar hook capping protein [Bacillus cellulosilyticus DSM 2522] Length = 149 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 44/127 (34%), Positives = 72/127 (56%), Gaps = 14/127 (11%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75 K+++ L +DAFL++LITQ+++QDP PM+ E +AQ+A F+ +EQ MN+ LQ+ L Sbjct: 19 KARNTGDLDKDAFLRILITQLQNQDPLNPMEDKEFIAQMAQFTSLEQMTNMNTNLQKFLD 78 Query: 76 S--NNLAQASSYIGKNI------TNADGS-----ISGVVNAIQVSSTGLTAITVDNTEIP 122 S N S IGK + N DGS + GVV +++ + G ++ +D+ Sbjct: 79 SHQNQFVSHSELIGKEVQWERERVNEDGSKRMEVVEGVVTSVKFQN-GSASLVIDDQHTV 137 Query: 123 ITTGIRI 129 T I++ Sbjct: 138 STKDIQV 144 >gi|332298238|ref|YP_004440160.1| flagellar hook capping protein [Treponema brennaborense DSM 12168] gi|332181341|gb|AEE17029.1| flagellar hook capping protein [Treponema brennaborense DSM 12168] Length = 146 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 40/84 (47%), Positives = 58/84 (69%), Gaps = 2/84 (2%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82 LG+D FLKLL+TQ+ +QDPT PM+ +E +AQ+A FS +EQ M+S +L N +A Sbjct: 37 LGKDDFLKLLLTQLSNQDPTSPMENTEFIAQMAQFSSLEQMTNMSSEFTKLANMLNSNEA 96 Query: 83 SSYIGKNI-TNA-DGSISGVVNAI 104 S +GKN+ NA D ++SGVV ++ Sbjct: 97 VSLLGKNVELNAGDAAVSGVVESV 120 >gi|315186382|gb|EFU20142.1| flagellar hook capping protein [Spirochaeta thermophila DSM 6578] Length = 145 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 39/88 (44%), Positives = 55/88 (62%), Gaps = 2/88 (2%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79 K+ LG+D FLKLL+ Q+ HQDPT+P++ E +AQ+A FS +EQ M+ +L Sbjct: 33 KQELGKDDFLKLLVAQLTHQDPTQPLEDKEFIAQMAQFSTLEQMTNMSQEFSKLALRLQS 92 Query: 80 AQASSYIGKN--ITNADGSISGVVNAIQ 105 +QA S +GK I N D ISGVV ++ Sbjct: 93 SQAFSLLGKTVVIKNGDEEISGVVEEVR 120 >gi|309388824|gb|ADO76704.1| flagellar hook capping protein [Halanaerobium praevalens DSM 2228] Length = 168 Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 44/106 (41%), Positives = 64/106 (60%), Gaps = 5/106 (4%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82 LGQDAF KLLITQ+++QDP PM+ E V+Q+A FS +E++ ++ S L++ L SN + Sbjct: 36 LGQDAFFKLLITQLQNQDPLNPMEDREFVSQMAEFSSLEKTEKLYSLLEDKLSSNQVINN 95 Query: 83 SSYIGKNIT-NADG----SISGVVNAIQVSSTGLTAITVDNTEIPI 123 S IGK IT N D + GVV +I+ + A + E+ I Sbjct: 96 SHLIGKEITANVDEGNSTGVKGVVESIKSQGDQIFAALDNGLEVDI 141 >gi|15639715|ref|NP_219165.1| flagellar basal body rod modification protein [Treponema pallidum subsp. pallidum str. Nichols] gi|189025953|ref|YP_001933725.1| flagellar basal body rod modification protein [Treponema pallidum subsp. pallidum SS14] gi|2196902|gb|AAB61259.1| FlgD [Treponema pallidum] gi|3323034|gb|AAC65697.1| flagellar hook assembly scaffolding protein (flgD) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018528|gb|ACD71146.1| flagellar hook assembly scaffolding protein [Treponema pallidum subsp. pallidum SS14] gi|291060092|gb|ADD72827.1| flagellar hook capping protein [Treponema pallidum subsp. pallidum str. Chicago] Length = 153 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 38/106 (35%), Positives = 65/106 (61%), Gaps = 2/106 (1%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 +E++ V Q E +K+ LG+D FL LLI Q+ HQDPT PM+ ++ +AQ+A FS + Sbjct: 19 LEMDVRVINKQLEAGARSAKRELGKDDFLHLLIAQLTHQDPTAPMQDTQFIAQMAQFSSL 78 Query: 61 EQSVQMNSTLQELLKSNNLAQASSYIGK--NITNADGSISGVVNAI 104 EQ M++ +++L +A +GK +T AD ++ G+++A+ Sbjct: 79 EQMANMSAQVEKLGTLFGNTEALQAVGKMVEVTEADNTVRGLISAV 124 >gi|303326941|ref|ZP_07357383.1| basal-body rod modification protein FlgD [Desulfovibrio sp. 3_1_syn3] gi|302862929|gb|EFL85861.1| basal-body rod modification protein FlgD [Desulfovibrio sp. 3_1_syn3] Length = 282 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 43/104 (41%), Positives = 67/104 (64%), Gaps = 13/104 (12%) Query: 7 VNPTQQEFSKSKSKK---TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 +N T EF+ + SK+ + +D+F+ LL+TQ K+QDP PM+ E +AQLA FS +EQ Sbjct: 8 LNQTNNEFNSALSKQKGSNMDKDSFMLLLVTQFKYQDPLNPMEDKEFIAQLAQFSSLEQL 67 Query: 64 VQMNSTLQELLKSNN---LAQASSYIGKNITNADGSISGVVNAI 104 + +N++++ L + N + A+SYIGKN+ S+SG NAI Sbjct: 68 MNLNTSMEGLTDATNNQQMINATSYIGKNV-----SVSG--NAI 104 >gi|206889592|ref|YP_002248122.1| flagellar hook capping protein [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741530|gb|ACI20587.1| flagellar hook capping protein [Thermodesulfovibrio yellowstonii DSM 11347] Length = 137 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 41/95 (43%), Positives = 59/95 (62%), Gaps = 6/95 (6%) Query: 8 NP--TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65 NP T QE + + + ++AFLKLL Q+K+QDP PM +E V QLA+FS +EQ + Sbjct: 10 NPLYTVQEKTTATGNSQIDKEAFLKLLTAQLKYQDPLNPMDNTEFVGQLAMFSALEQVIN 69 Query: 66 MNSTLQEL----LKSNNLAQASSYIGKNITNADGS 96 +N+TL++L + SN L S+ IGK I DG+ Sbjct: 70 INNTLEQLANSQVYSNALMIGSTIIGKTIVTTDGT 104 >gi|220904529|ref|YP_002479841.1| flagellar hook capping protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868828|gb|ACL49163.1| flagellar hook capping protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 284 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 41/109 (37%), Positives = 67/109 (61%), Gaps = 6/109 (5%) Query: 7 VNPTQQEFSKSKSKK---TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 +N T EF+ + SK+ L +D+F+ LL+TQ K+QDP PM+ E +AQ+A FS +EQ Sbjct: 8 LNRTNNEFNTALSKQKGSNLDKDSFMLLLVTQFKYQDPLNPMEDKEFIAQMAQFSSLEQL 67 Query: 64 VQMNSTLQELLKSNN---LAQASSYIGKNITNADGSISGVVNAIQVSST 109 + +N++++ L + N + A+SYIGK +T + +I V + ST Sbjct: 68 MNLNTSMEGLTNATNNQQMINATSYIGKQVTVSGNTIGKVTDETTKEST 116 >gi|167037662|ref|YP_001665240.1| flagellar hook capping protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167040323|ref|YP_001663308.1| flagellar hook capping protein [Thermoanaerobacter sp. X514] gi|300914407|ref|ZP_07131723.1| flagellar hook capping protein [Thermoanaerobacter sp. X561] gi|307724357|ref|YP_003904108.1| flagellar hook capping protein [Thermoanaerobacter sp. X513] gi|320116077|ref|YP_004186236.1| flagellar hook capping protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166854563|gb|ABY92972.1| flagellar hook capping protein [Thermoanaerobacter sp. X514] gi|166856496|gb|ABY94904.1| flagellar hook capping protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|300889342|gb|EFK84488.1| flagellar hook capping protein [Thermoanaerobacter sp. X561] gi|307581418|gb|ADN54817.1| flagellar hook capping protein [Thermoanaerobacter sp. X513] gi|319929168|gb|ADV79853.1| flagellar hook capping protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 131 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 50/130 (38%), Positives = 72/130 (55%), Gaps = 14/130 (10%) Query: 1 MEINTEVNPTQQEFSK-SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59 M+INT N T ++ S LG+D FLKLL+TQ+K+QDP PM E +AQLA FS Sbjct: 1 MDINTNYNVTSIYNNRVSTLNSQLGKDDFLKLLVTQLKNQDPLNPMDDREFIAQLAQFST 60 Query: 60 MEQSVQMNSTLQELLKSNNLAQASSYIGKN----ITNADGSISGVVNAIQV--SSTGLTA 113 +EQ MNS++ N +A + IGKN IT+ +G+ V+ + V G Sbjct: 61 LEQMQNMNSSI-------NAIRAINLIGKNIYATITDNNGNSRTVIGKVDVVYKQNGEYF 113 Query: 114 ITVDNTEIPI 123 + V+ +IP+ Sbjct: 114 LEVNGIDIPL 123 >gi|269792938|ref|YP_003317842.1| flagellar hook capping protein [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100573|gb|ACZ19560.1| flagellar hook capping protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 134 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 43/127 (33%), Positives = 69/127 (54%), Gaps = 9/127 (7%) Query: 5 TEVNPTQQEFSKSKS-----KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59 EVN Q S + KK LG+D FLK+LI Q+ HQDP +P+K + +AQ+A FS Sbjct: 2 AEVNGVTQAASGGQEATRAVKKELGKDDFLKILIAQLTHQDPLDPLKDRDFIAQMAQFSA 61 Query: 60 MEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADG---SISGVVNAIQVSSTGLTAITV 116 +EQ + + ++ L K ++A A +Y+G+ + D +GVV +++ +T Sbjct: 62 LEQQMNIAKGIEGLSKL-SMASAVNYVGRTVGYTDDQGQEAAGVVKFVEMKDGSVTLHLA 120 Query: 117 DNTEIPI 123 D IP+ Sbjct: 121 DGNSIPM 127 >gi|329929292|ref|ZP_08283045.1| flagellar hook capping protein [Paenibacillus sp. HGF5] gi|328936661|gb|EGG33104.1| flagellar hook capping protein [Paenibacillus sp. HGF5] Length = 186 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 47/125 (37%), Positives = 76/125 (60%), Gaps = 11/125 (8%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74 +K+ + + LG+D FL +LITQ++HQDP +PM+ E +AQ+A F+ +EQ + +N+ L + Sbjct: 22 TKNGNGQELGKDQFLSILITQLRHQDPLQPMQDREFIAQMAQFTSLEQLMNINTQLTAM- 80 Query: 75 KSNNLAQASSYIGKNIT----NADGSI----SGVVNAIQVSSTGLTAITVDNTEIPITTG 126 S +L ASS IGK I+ DGS SG+V++I V G+ V +E+ + Sbjct: 81 -SQSLGAASSLIGKQISWMFKPEDGSDSVMKSGLVDSIIVRE-GVHYAKVGESEVSLDQI 138 Query: 127 IRISN 131 ++I N Sbjct: 139 VKIEN 143 >gi|302392389|ref|YP_003828209.1| flagellar hook capping protein [Acetohalobium arabaticum DSM 5501] gi|302204466|gb|ADL13144.1| flagellar hook capping protein [Acetohalobium arabaticum DSM 5501] Length = 138 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 37/92 (40%), Positives = 55/92 (59%), Gaps = 4/92 (4%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82 +G+D FL+L +TQ+K+Q+P EPM E +AQ A F+ MEQ MN L++ L L Q Sbjct: 27 MGKDEFLELFVTQLKNQNPLEPMDNKEFIAQTAQFTSMEQMKNMNQNLEKFLGMQKLTQV 86 Query: 83 SSYIGKNITNADGS----ISGVVNAIQVSSTG 110 SS IGK + D I+G V ++++ +G Sbjct: 87 SSLIGKEVKALDSDSGEEITGEVEKVKMADSG 118 >gi|312126826|ref|YP_003991700.1| flagellar hook capping protein [Caldicellulosiruptor hydrothermalis 108] gi|311776845|gb|ADQ06331.1| flagellar hook capping protein [Caldicellulosiruptor hydrothermalis 108] Length = 164 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 46/123 (37%), Positives = 73/123 (59%), Gaps = 13/123 (10%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 NT V+ + Q + S +K LG+ FL LL+TQ+++QDP +PM+ E VAQLA FS +EQ Sbjct: 9 NTNVSNSTQSLAASSAKNVLGKQEFLNLLVTQLRYQDPLKPMEDKEFVAQLAQFSALEQM 68 Query: 64 VQMNSTLQELLKSNNLAQASSYIGKNIT-----NADGSISGVVNAIQVSSTGLTAITVDN 118 +N ++ ELLK A S IG+ + +A I G V++I++ + + + V+ Sbjct: 69 QNLNESV-ELLK------AQSMIGRYVVATSPQDASKLIEGRVDSIKIDGSKVY-LKVNG 120 Query: 119 TEI 121 TE+ Sbjct: 121 TEV 123 >gi|261407977|ref|YP_003244218.1| flagellar hook capping protein [Paenibacillus sp. Y412MC10] gi|261284440|gb|ACX66411.1| flagellar hook capping protein [Paenibacillus sp. Y412MC10] Length = 186 Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 47/125 (37%), Positives = 75/125 (60%), Gaps = 11/125 (8%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74 +K+ + + LG+D FL +LITQ++HQDP +PM+ E +AQ+A F+ +EQ + +N+ L + Sbjct: 22 TKNGNGQELGKDQFLSILITQLRHQDPLQPMQDREFIAQMAQFTSLEQLMNINTQLTAM- 80 Query: 75 KSNNLAQASSYIGKNIT----NADGSI----SGVVNAIQVSSTGLTAITVDNTEIPITTG 126 S +L ASS IGK I+ DGS SG+V++I V G+ V E+ + Sbjct: 81 -SQSLGAASSLIGKQISWMFKPEDGSDSVMKSGLVDSIIVRD-GVHYAKVGENEVSLDQI 138 Query: 127 IRISN 131 ++I N Sbjct: 139 VKIEN 143 >gi|315648131|ref|ZP_07901232.1| flagellar hook capping protein [Paenibacillus vortex V453] gi|315276777|gb|EFU40120.1| flagellar hook capping protein [Paenibacillus vortex V453] Length = 188 Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 46/125 (36%), Positives = 75/125 (60%), Gaps = 12/125 (9%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75 K+ + + LG+D FL +LITQ++HQDP +PM+ E +AQ+A F+ +EQ + +N+ L + Sbjct: 23 KNGNGQELGKDQFLSILITQLRHQDPLQPMQDREFIAQMAQFTSLEQLMNINTQLTAM-- 80 Query: 76 SNNLAQASSYIGKNIT----NADGS-----ISGVVNAIQVSSTGLTAITVDNTEIPITTG 126 S +L ASS IGK I+ DGS SG+V++I V G+ + +E+ + Sbjct: 81 SQSLGAASSLIGKQISWMFKPEDGSENTVMKSGIVDSIIVRD-GIHYAKIGESEVALDQI 139 Query: 127 IRISN 131 ++I N Sbjct: 140 LKIEN 144 >gi|312876504|ref|ZP_07736487.1| flagellar hook capping protein [Caldicellulosiruptor lactoaceticus 6A] gi|311796715|gb|EFR13061.1| flagellar hook capping protein [Caldicellulosiruptor lactoaceticus 6A] Length = 164 Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 49/122 (40%), Positives = 72/122 (59%), Gaps = 13/122 (10%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 T V + Q + S +K LG+ FL LL+TQ+++QDP +PM+ E VAQLA FS +EQ Sbjct: 10 TNVPSSTQGLATSSTKNVLGKQEFLNLLVTQLRYQDPLKPMEDKEFVAQLAQFSALEQMQ 69 Query: 65 QMNSTLQELLKSNNLAQASSYIGKNI--TNADGS---ISGVVNAIQVSSTGLTAITVDNT 119 +N + ELLK+ N+ IG+ I TN S I G V +++V + + + V+NT Sbjct: 70 NLNESF-ELLKAQNM------IGRYIVATNPQDSSKQIEGRVESVKVDGSKVY-LKVNNT 121 Query: 120 EI 121 EI Sbjct: 122 EI 123 >gi|242280468|ref|YP_002992597.1| flagellar hook capping protein [Desulfovibrio salexigens DSM 2638] gi|242123362|gb|ACS81058.1| flagellar hook capping protein [Desulfovibrio salexigens DSM 2638] Length = 242 Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 37/84 (44%), Positives = 54/84 (64%), Gaps = 3/84 (3%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77 K K LGQD FLKLL+TQ+++QDP PM+ E +AQ+A FS +EQ Q+NS ++ ++ +N Sbjct: 24 KHKNQLGQDDFLKLLLTQMQNQDPANPMEDKEYMAQMAQFSSLEQLTQVNSNIKTMIDNN 83 Query: 78 ---NLAQASSYIGKNITNADGSIS 98 + A +IGK + SIS Sbjct: 84 AQDQMVSAVGFIGKEVKAEGYSIS 107 >gi|308273520|emb|CBX30122.1| hypothetical protein N47_D29310 [uncultured Desulfobacterium sp.] Length = 113 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 46/107 (42%), Positives = 59/107 (55%), Gaps = 14/107 (13%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL------LKS 76 +G+D FL LL+TQ+K+QDP PM+ E AQLA FS +EQ MN+TL + K Sbjct: 1 MGKDEFLNLLVTQLKYQDPLNPMEGQEFSAQLAQFSSLEQLTNMNTTLTGIKDSVGEKKQ 60 Query: 77 NNLAQASSYIGKNITNAD---GSISGVV--NAIQVSSTGLTAITVDN 118 +NL YIGKNI +D G ++GV N I G I DN Sbjct: 61 DNLL---DYIGKNIKTSDDETGEVTGVTYQNGIGYLMVGENKILPDN 104 >gi|91204390|emb|CAJ70890.1| similar to flagellar hook assembly protein [Candidatus Kuenenia stuttgartiensis] Length = 137 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 39/115 (33%), Positives = 64/115 (55%), Gaps = 11/115 (9%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL-------LKSNN 78 D+FL L TQ+++QDP +P SE ++QLA F+ +EQ+ Q L +L L+ + Sbjct: 16 DSFLTLFTTQMRYQDPLDPQDNSEFLSQLAQFTTLEQTSQQTEYLADLSSLDTASLQLDQ 75 Query: 79 LAQASSYIGKNITNAD----GSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129 + AS +IGK IT +D G SGVV +++ G + +D + I+ I++ Sbjct: 76 IGIASGFIGKTITYSDDDGEGEYSGVVEGVKLEEDGTVSFVIDGESVSISNFIQV 130 >gi|320538207|ref|ZP_08038102.1| flagellar hook capping protein [Treponema phagedenis F0421] gi|2196891|gb|AAB61250.1| FlgD [Treponema phagedenis] gi|320145024|gb|EFW36745.1| flagellar hook capping protein [Treponema phagedenis F0421] Length = 163 Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 44/108 (40%), Positives = 65/108 (60%), Gaps = 8/108 (7%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 +E++ Q E K K+ LG++ FL+LLI Q+ HQDPT PM+ ++ VAQ+A F+ + Sbjct: 26 LELDVNAFNKQIEIDGRKPKQELGKNDFLQLLIAQLSHQDPTAPMEDTQFVAQMAQFTSL 85 Query: 61 EQSVQMNSTLQELLKSNNL---AQASSYIGKNITNADGSI--SGVVNA 103 E QM + Q K NNL ++A + +GK + DGSI SGV+ A Sbjct: 86 E---QMTNVSQSFEKLNNLLSGSEAVNAVGKQVNIEDGSIKVSGVITA 130 >gi|297617145|ref|YP_003702304.1| flagellar hook capping protein [Syntrophothermus lipocalidus DSM 12680] gi|297144982|gb|ADI01739.1| flagellar hook capping protein [Syntrophothermus lipocalidus DSM 12680] Length = 171 Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 45/114 (39%), Positives = 66/114 (57%), Gaps = 14/114 (12%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--------- 73 LG+D F KLLIT++K+QDP EPMK E +AQ+A FS +EQ MN+ LQ L Sbjct: 24 LGKDDFFKLLITELKYQDPLEPMKDREFIAQMASFSSLEQMYNMNTNLQSLSTALNSYVS 83 Query: 74 -LKSN-NLAQASSYIGKNI--TNADGSISGVVNAIQVSSTGLTAITVDNTEIPI 123 L SN + +A + +G+ I A G+ G V +I V G+ +TV+ ++ + Sbjct: 84 TLSSNLSWQEALALLGQEIEFETAAGTACGRVESI-VLKDGVPYLTVNGEQVSL 136 >gi|289523566|ref|ZP_06440420.1| flagellar hook capping protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503258|gb|EFD24422.1| flagellar hook capping protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 142 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 39/88 (44%), Positives = 52/88 (59%), Gaps = 1/88 (1%) Query: 7 VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66 VN + K + K LG+D FLKLLITQ+ HQDP EP+ +E +AQ+A FS +EQ + Sbjct: 9 VNQSYYNEGKREIKNELGKDDFLKLLITQLTHQDPLEPVSDTEFIAQMAQFSTLEQMTNV 68 Query: 67 NSTLQELLKSNNLAQASSYIGKNITNAD 94 ++ LL L A SYIGK + D Sbjct: 69 AKGVESLLSVTKL-NAQSYIGKEVIYYD 95 >gi|307718605|ref|YP_003874137.1| flagellar hook assembly protein [Spirochaeta thermophila DSM 6192] gi|306532330|gb|ADN01864.1| flagellar hook assembly protein [Spirochaeta thermophila DSM 6192] Length = 145 Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 38/88 (43%), Positives = 54/88 (61%), Gaps = 2/88 (2%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79 K+ LG+D FLKLL+ Q+ HQDPT+P++ E +AQ+A FS +EQ M+ +L Sbjct: 33 KQELGKDDFLKLLVAQLTHQDPTQPLEDKEFIAQMAQFSTLEQMTNMSQEFSKLALRLQS 92 Query: 80 AQASSYIGKN--ITNADGSISGVVNAIQ 105 +QA S +GK I N ISGVV ++ Sbjct: 93 SQAFSLLGKTVVIKNGGQEISGVVEEVR 120 >gi|134300241|ref|YP_001113737.1| flagellar hook capping protein [Desulfotomaculum reducens MI-1] gi|134052941|gb|ABO50912.1| flagellar hook capping protein [Desulfotomaculum reducens MI-1] Length = 185 Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 35/93 (37%), Positives = 60/93 (64%), Gaps = 4/93 (4%) Query: 1 MEINTEVNPTQQEFSKSKSK---KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVF 57 ME+N + N + + K+K KTL +DAFL+++I Q+++QDP+ PM +S+ + Q+A+F Sbjct: 1 MEVN-QTNNSDLYYENRKTKESVKTLDKDAFLQIMIAQLRYQDPSSPMDSSKFIEQMAMF 59 Query: 58 SQMEQSVQMNSTLQELLKSNNLAQASSYIGKNI 90 + +EQ +N+ ++ L L ASS IGK + Sbjct: 60 TTLEQMTNLNTNMERLYHLQELNHASSLIGKRV 92 >gi|319649560|ref|ZP_08003716.1| flagellar basal body rod modification protein D [Bacillus sp. 2_A_57_CT2] gi|317398722|gb|EFV79404.1| flagellar basal body rod modification protein D [Bacillus sp. 2_A_57_CT2] Length = 150 Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 34/83 (40%), Positives = 59/83 (71%), Gaps = 7/83 (8%) Query: 16 KSKSKKT----LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 +S+++KT LG+D FLK+L+TQ+++QDP PM+ + +AQ+A FS +EQ MN T++ Sbjct: 15 QSQTRKTGSDILGKDDFLKILMTQLQNQDPMNPMQDKDFIAQMATFSSLEQMTNMNKTME 74 Query: 72 ELL---KSNNLAQASSYIGKNIT 91 +L+ + N L ++++GKN+T Sbjct: 75 KLVAFQEQNQLMTYNNFLGKNVT 97 >gi|94987009|ref|YP_594942.1| flagellar hook capping protein [Lawsonia intracellularis PHE/MN1-00] gi|94731258|emb|CAJ54621.1| Flagellar hook capping protein [Lawsonia intracellularis PHE/MN1-00] Length = 279 Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 35/80 (43%), Positives = 50/80 (62%), Gaps = 3/80 (3%) Query: 14 FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73 FS+ K LG++ FLKLL+TQ K+QDP PM+ E +AQLA FS +EQ + N ++ L Sbjct: 16 FSQQAGKSELGKEDFLKLLVTQFKYQDPLNPMEDKEFIAQLAQFSALEQQMSTNEKMESL 75 Query: 74 LK---SNNLAQASSYIGKNI 90 L + A+S+IGK + Sbjct: 76 LNLQTQQQMISAASFIGKEV 95 >gi|317154734|ref|YP_004122782.1| flagellar hook capping protein [Desulfovibrio aespoeensis Aspo-2] gi|316944985|gb|ADU64036.1| flagellar hook capping protein [Desulfovibrio aespoeensis Aspo-2] Length = 247 Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 34/75 (45%), Positives = 50/75 (66%), Gaps = 3/75 (4%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LK 75 SK +LGQ FL LL+ Q+ HQDP PM+ ++ +QLA FS +EQ ++N +Q L + Sbjct: 26 SKASLGQADFLTLLVAQLTHQDPLNPMQDTDMTSQLAQFSSLEQLTKINDGVQSLNTVMG 85 Query: 76 SNNLAQASSYIGKNI 90 ++L A+SYIGK+I Sbjct: 86 KSDLLSAASYIGKDI 100 >gi|15615014|ref|NP_243317.1| flagellar basal body rod modification protein [Bacillus halodurans C-125] gi|10175071|dbj|BAB06170.1| flagellar hook assembly protein [Bacillus halodurans C-125] Length = 171 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 47/72 (65%), Gaps = 3/72 (4%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK---SNNL 79 LG+D FL++LI Q+++QDP PM E +AQ+A FS +EQ MNS +Q+ +K S L Sbjct: 26 LGKDDFLRILIAQLQYQDPLNPMDDREFIAQMAQFSSLEQMTNMNSAIQQFVKQQTSQTL 85 Query: 80 AQASSYIGKNIT 91 Q S IGK +T Sbjct: 86 VQHSELIGKRVT 97 >gi|224534247|ref|ZP_03674825.1| flagellar hook capping protein [Borrelia spielmanii A14S] gi|224514349|gb|EEF84665.1| flagellar hook capping protein [Borrelia spielmanii A14S] Length = 147 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 39/93 (41%), Positives = 58/93 (62%), Gaps = 3/93 (3%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78 +K LG+D FLKLLITQ+++QDPT PMK E +AQ+A FS +EQ M+ + ++L S Sbjct: 32 NKVNLGKDDFLKLLITQLRYQDPTNPMKDKEFIAQMAQFSALEQMANMSKSFEKLSSSLE 91 Query: 79 LAQASSYIGKNIT--NADGSI-SGVVNAIQVSS 108 + + +GK I + DG I G V +I+ + Sbjct: 92 IRKDLDLLGKVIKFQHGDGEIVKGRVTSIKTGA 124 >gi|111115109|ref|YP_709727.1| flagellar basal body rod modification protein [Borrelia afzelii PKo] gi|110890383|gb|ABH01551.1| flagellar hook assembly protein [Borrelia afzelii PKo] Length = 147 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 39/90 (43%), Positives = 57/90 (63%), Gaps = 3/90 (3%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78 +K LG+D FLKLLITQ+++QDPT PMK E +AQ+A FS +EQ M+ + ++L S Sbjct: 32 NKVNLGKDDFLKLLITQLRYQDPTNPMKDKEFIAQMAQFSALEQMANMSKSFEKLSSSLE 91 Query: 79 LAQASSYIGKNIT--NADGSI-SGVVNAIQ 105 + + +GK I + DG I G V +I+ Sbjct: 92 IRKDLDLLGKVIKFQHGDGEIVEGRVTSIK 121 >gi|78043304|ref|YP_359846.1| flagellar hook assembly protein [Carboxydothermus hydrogenoformans Z-2901] gi|77995419|gb|ABB14318.1| flagellar hook assembly protein [Carboxydothermus hydrogenoformans Z-2901] Length = 135 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 36/96 (37%), Positives = 60/96 (62%), Gaps = 3/96 (3%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74 + S++K L +DAFLK+ + Q+++QDP P +E +A+LA F +EQ + L +LL Sbjct: 18 AASQTKLNLDKDAFLKIFLAQLQYQDPLNPADGTEFIAELAQFGMLEQLTNLTDALTKLL 77 Query: 75 KSNNLAQASSYIGKNI---TNADGSISGVVNAIQVS 107 + AQA++ IGK + T A+ + GVV+A++ S Sbjct: 78 QFEQKAQAAALIGKTVKIATAAETLVEGVVSAVRWS 113 >gi|216264944|ref|ZP_03436936.1| flagellar hook capping protein [Borrelia burgdorferi 156a] gi|224533148|ref|ZP_03673748.1| flagellar hook capping protein [Borrelia burgdorferi WI91-23] gi|215981417|gb|EEC22224.1| flagellar hook capping protein [Borrelia burgdorferi 156a] gi|224511875|gb|EEF82276.1| flagellar hook capping protein [Borrelia burgdorferi WI91-23] gi|312148217|gb|ADQ30876.1| flagellar hook capping protein [Borrelia burgdorferi JD1] gi|312149592|gb|ADQ29663.1| flagellar hook capping protein [Borrelia burgdorferi N40] Length = 147 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 36/81 (44%), Positives = 52/81 (64%), Gaps = 2/81 (2%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78 +K LG+D FLKLLITQ+++QDPT PMK E +AQ+A FS +EQ M+ + ++L S Sbjct: 32 NKVNLGKDDFLKLLITQLRYQDPTNPMKDKEFIAQMAQFSALEQMANMSRSFEKLSSSLE 91 Query: 79 LAQASSYIGKNIT--NADGSI 97 + + +GK I + DG I Sbjct: 92 IRKDLDLLGKVIKFQHGDGEI 112 >gi|224531754|ref|ZP_03672386.1| flagellar hook capping protein [Borrelia valaisiana VS116] gi|224511219|gb|EEF81625.1| flagellar hook capping protein [Borrelia valaisiana VS116] Length = 147 Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 36/81 (44%), Positives = 52/81 (64%), Gaps = 2/81 (2%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78 +K LG+D FLKLLITQ+++QDPT PMK E +AQ+A FS +EQ M+ + ++L S Sbjct: 32 NKVNLGKDDFLKLLITQLRYQDPTNPMKDKEFIAQMAQFSSLEQMANMSKSFEKLSSSLE 91 Query: 79 LAQASSYIGKNIT--NADGSI 97 + + +GK I + DG I Sbjct: 92 IRKDLDLLGKVIKFQHGDGEI 112 >gi|15594629|ref|NP_212418.1| flagellar basal body rod modification protein [Borrelia burgdorferi B31] gi|195941362|ref|ZP_03086744.1| flagellar basal body rod modification protein [Borrelia burgdorferi 80a] gi|218249522|ref|YP_002374807.1| flagellar hook capping protein [Borrelia burgdorferi ZS7] gi|221217794|ref|ZP_03589262.1| flagellar hook capping protein [Borrelia burgdorferi 72a] gi|223888939|ref|ZP_03623530.1| flagellar hook capping protein [Borrelia burgdorferi 64b] gi|224533832|ref|ZP_03674420.1| flagellar hook capping protein [Borrelia burgdorferi CA-11.2a] gi|225549019|ref|ZP_03769994.1| flagellar hook capping protein [Borrelia burgdorferi 94a] gi|225550075|ref|ZP_03771035.1| flagellar hook capping protein [Borrelia burgdorferi 118a] gi|226320585|ref|ZP_03796145.1| flagellar hook capping protein [Borrelia burgdorferi 29805] gi|226321602|ref|ZP_03797128.1| flagellar hook capping protein [Borrelia burgdorferi Bol26] gi|1165268|gb|AAA85607.1| YlxG [Borrelia burgdorferi] gi|1196325|gb|AAB51417.1| flagellar hook assembly protein [Borrelia burgdorferi] gi|2688182|gb|AAC66664.1| flagellar hook assembly protein (flgD) [Borrelia burgdorferi B31] gi|218164710|gb|ACK74771.1| flagellar hook capping protein [Borrelia burgdorferi ZS7] gi|221192471|gb|EEE18690.1| flagellar hook capping protein [Borrelia burgdorferi 72a] gi|223885755|gb|EEF56854.1| flagellar hook capping protein [Borrelia burgdorferi 64b] gi|224513125|gb|EEF83488.1| flagellar hook capping protein [Borrelia burgdorferi CA-11.2a] gi|225369187|gb|EEG98640.1| flagellar hook capping protein [Borrelia burgdorferi 118a] gi|225370245|gb|EEG99683.1| flagellar hook capping protein [Borrelia burgdorferi 94a] gi|226232791|gb|EEH31544.1| flagellar hook capping protein [Borrelia burgdorferi Bol26] gi|226234004|gb|EEH32725.1| flagellar hook capping protein [Borrelia burgdorferi 29805] Length = 147 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 36/81 (44%), Positives = 52/81 (64%), Gaps = 2/81 (2%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78 +K LG+D FLKLLITQ+++QDPT PMK E +AQ+A FS +EQ M+ + ++L S Sbjct: 32 NKVNLGKDDFLKLLITQLRYQDPTNPMKDKEFIAQMAQFSALEQMANMSRSFEKLSSSLE 91 Query: 79 LAQASSYIGKNIT--NADGSI 97 + + +GK I + DG I Sbjct: 92 IRKDLDLLGKVIKFQHGDGEI 112 >gi|288553058|ref|YP_003424993.1| flagellar basal body rod modification protein [Bacillus pseudofirmus OF4] gi|288544218|gb|ADC48101.1| flagellar basal body rod modification protein [Bacillus pseudofirmus OF4] Length = 169 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 35/71 (49%), Positives = 49/71 (69%), Gaps = 3/71 (4%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK---SNNL 79 LG+D FLKLLITQ+++QDP+ PM E +AQ+A FS +EQ MN+T+Q+ + S +L Sbjct: 25 LGKDDFLKLLITQLQNQDPSNPMDDREFIAQMAQFSSLEQMTNMNNTIQKFVDVQTSQSL 84 Query: 80 AQASSYIGKNI 90 Q S IGK + Sbjct: 85 VQFSELIGKEV 95 >gi|225552001|ref|ZP_03772941.1| flagellar hook capping protein [Borrelia sp. SV1] gi|225370999|gb|EEH00429.1| flagellar hook capping protein [Borrelia sp. SV1] Length = 147 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 36/81 (44%), Positives = 52/81 (64%), Gaps = 2/81 (2%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78 +K LG+D FLKLLITQ+++QDPT PMK E +AQ+A FS +EQ M+ + ++L S Sbjct: 32 NKVNLGKDDFLKLLITQLRYQDPTNPMKDKEFIAQMAQFSALEQMANMSRSFEKLSSSLE 91 Query: 79 LAQASSYIGKNIT--NADGSI 97 + + +GK I + DG I Sbjct: 92 IRKDLDLLGKVIKFQHGDGEI 112 >gi|257457612|ref|ZP_05622779.1| flagellar hook capping protein [Treponema vincentii ATCC 35580] gi|257444998|gb|EEV20074.1| flagellar hook capping protein [Treponema vincentii ATCC 35580] Length = 159 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 41/106 (38%), Positives = 67/106 (63%), Gaps = 6/106 (5%) Query: 1 MEINTEVNPTQQEFSKS-KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59 ME++T +N +Q F + K K+ LG+D FL+LL+ Q+ HQDPT PM+ ++ VAQ+A F+ Sbjct: 29 MEVDT-IN--KQNFPEGRKPKQELGKDDFLQLLVAQLTHQDPTSPMEDTQFVAQMAQFTS 85 Query: 60 MEQSVQMNSTLQELLKSNNLAQASSYIGK--NITNADGSISGVVNA 103 +EQ MN + L + + A + +GK +I + G++SG + A Sbjct: 86 LEQLTNMNQSFGTLNRLIGDSSAVNVVGKQVDIEQSGGTVSGTITA 131 >gi|296330842|ref|ZP_06873317.1| flagellar basal body rod modification protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674360|ref|YP_003866032.1| flagellar basal body rod modification protein [Bacillus subtilis subsp. spizizenii str. W23] gi|296151847|gb|EFG92721.1| flagellar basal body rod modification protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412604|gb|ADM37723.1| flagellar basal body rod modification protein [Bacillus subtilis subsp. spizizenii str. W23] Length = 140 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 35/104 (33%), Positives = 62/104 (59%), Gaps = 5/104 (4%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN-LAQ 81 LG+D FLK+L+TQ+++QDP P+ E ++Q+A FS +EQ + MN T+ + +++ + Sbjct: 24 LGKDEFLKILMTQVQNQDPLNPVDDKEFISQMATFSSLEQMMNMNKTMTQFVENQDPFTS 83 Query: 82 ASSYIGKNITNADG----SISGVVNAIQVSSTGLTAITVDNTEI 121 ++GK ++ DG +G V++++ S I D TEI Sbjct: 84 YVDWLGKEVSWTDGQSTTDKTGTVSSVKHSKGSYYLILDDGTEI 127 >gi|258514009|ref|YP_003190231.1| flagellar hook capping protein [Desulfotomaculum acetoxidans DSM 771] gi|257777714|gb|ACV61608.1| flagellar hook capping protein [Desulfotomaculum acetoxidans DSM 771] Length = 134 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 38/95 (40%), Positives = 61/95 (64%), Gaps = 3/95 (3%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74 S + S L ++AFLKL I Q+K+QDP P + + Q+A FS MEQ + +N+++ +L+ Sbjct: 17 STNASGMVLDKEAFLKLFIEQLKNQDPLSPQDPNAFMNQMAQFSVMEQLMNLNTSITQLI 76 Query: 75 KSNNLAQASSYIGKN--ITNADGS-ISGVVNAIQV 106 NL +A+S +G+ +T ADG+ ISG V +Q+ Sbjct: 77 DLQNLTEAASLVGRTVMVTGADGTEISGTVEKVQI 111 >gi|312792654|ref|YP_004025577.1| flagellar hook capping protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179794|gb|ADQ39964.1| flagellar hook capping protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 164 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 47/115 (40%), Positives = 68/115 (59%), Gaps = 13/115 (11%) Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 Q + S +K LG+ FL LL+TQ+++QDP +PM+ E VAQLA FS +EQ +N + Sbjct: 17 QGLATSSTKNVLGKQEFLNLLVTQLRYQDPLKPMEDKEFVAQLAQFSALEQMQNLNESF- 75 Query: 72 ELLKSNNLAQASSYIGKNI--TNADGS---ISGVVNAIQVSSTGLTAITVDNTEI 121 ELLK A S IG+ + TN S I G V +++V + + + V+NTEI Sbjct: 76 ELLK------AQSMIGRYVVATNPQDSSKQIEGRVESVKVDGSKVY-LKVNNTEI 123 >gi|51598544|ref|YP_072732.1| flagellar basal body rod modification protein [Borrelia garinii PBi] gi|51573115|gb|AAU07140.1| flagellar hook assembly protein [Borrelia garinii PBi] Length = 147 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 35/81 (43%), Positives = 52/81 (64%), Gaps = 2/81 (2%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78 SK LG+D FLKLLITQ+++QDPT PMK E ++Q+A FS +EQ M+ + ++L S Sbjct: 32 SKVNLGKDDFLKLLITQLRYQDPTNPMKDKEFISQMAQFSALEQMTNMSKSFEKLSSSLG 91 Query: 79 LAQASSYIGKNIT--NADGSI 97 + + +GK I + DG + Sbjct: 92 IRRDLDLLGKVIKFQHGDGEV 112 >gi|182412239|ref|YP_001817305.1| flagellar hook capping protein [Opitutus terrae PB90-1] gi|177839453|gb|ACB73705.1| flagellar hook capping protein [Opitutus terrae PB90-1] Length = 155 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 61/96 (63%), Gaps = 3/96 (3%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74 + + K TL Q+ FLKLL Q + QDP PM+ +E +AQ+A F+ ++QS + + +++ Sbjct: 25 TPAPKKTTLDQNDFLKLLTVQFQQQDPMSPMEDTEFIAQMAQFTALDQSKALLTQMKQFS 84 Query: 75 KSNNLAQASSYIGKNITNAD---GSISGVVNAIQVS 107 + A A+SYIG+ +T AD + +GVV+ ++++ Sbjct: 85 TMQDAATANSYIGRQVTFADENGATATGVVSGVEIT 120 >gi|312135847|ref|YP_004003185.1| flagellar hook capping protein [Caldicellulosiruptor owensensis OL] gi|311775898|gb|ADQ05385.1| flagellar hook capping protein [Caldicellulosiruptor owensensis OL] Length = 170 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 46/110 (41%), Positives = 70/110 (63%), Gaps = 13/110 (11%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 S +K LG+ FL LL+TQ+++QDP +PM+ E VAQLA FS +EQ +N++ E LK Sbjct: 22 SANKNILGKQEFLNLLVTQLRYQDPLKPMEDKEFVAQLAQFSALEQMQNLNNSF-EFLK- 79 Query: 77 NNLAQASSYIGKNI--TNA-DGS--ISGVVNAIQVSSTGLTAITVDNTEI 121 A S IG+ + TNA DG+ I G V++I+V + + + V++TE+ Sbjct: 80 -----AQSMIGRYVIATNAQDGARQIEGRVDSIRVDGSKVF-LKVNDTEV 123 >gi|304404251|ref|ZP_07385913.1| flagellar hook capping protein [Paenibacillus curdlanolyticus YK9] gi|304347229|gb|EFM13061.1| flagellar hook capping protein [Paenibacillus curdlanolyticus YK9] Length = 163 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 42/120 (35%), Positives = 70/120 (58%), Gaps = 15/120 (12%) Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 Q+ + +K TLG+D FLK+L+TQ+++QDP++P++ + +AQ+A FS +EQ + M+ + Sbjct: 21 QKAAATKKDTTLGKDDFLKILVTQLRNQDPSQPLQDRDFIAQMAQFSSVEQLMNMSEEMT 80 Query: 72 ELLKSNNLAQASSYIGKNI-------TNADGSISGVVNAI------QVSSTGLTAITVDN 118 +L + NL ASS IG + T + SG+V AI Q + G + VD+ Sbjct: 81 KLRQ--NLGSASSMIGMTVEWNGMSDTGIGTTYSGLVEAISIKDGVQYAKVGDKTVKVDD 138 >gi|157692307|ref|YP_001486769.1| flagellar basal body rod modification protein [Bacillus pumilus SAFR-032] gi|157681065|gb|ABV62209.1| flagellar basal body rod modification protein [Bacillus pumilus SAFR-032] Length = 148 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 43/108 (39%), Positives = 62/108 (57%), Gaps = 12/108 (11%) Query: 10 TQQEFSKSKSKKT--LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67 TQ + S KKT LG+D FLK+L+TQ+++QDPT P+ E V QLA FS +EQ MN Sbjct: 12 TQTDTSSKAEKKTDTLGKDQFLKILLTQLQNQDPTNPLDDREFVTQLATFSSLEQQTNMN 71 Query: 68 STLQEL--LKSNNLAQAS------SYIGKNITNA--DGSISGVVNAIQ 105 ++ +L L S +A +IGK ++ D ISG V +++ Sbjct: 72 DSITKLNQLMSTFVAHQDPFTTYVGWIGKEVSGKLDDKDISGTVKSVK 119 >gi|295399816|ref|ZP_06809797.1| flagellar hook capping protein [Geobacillus thermoglucosidasius C56-YS93] gi|312111672|ref|YP_003989988.1| flagellar hook capping protein [Geobacillus sp. Y4.1MC1] gi|294978219|gb|EFG53816.1| flagellar hook capping protein [Geobacillus thermoglucosidasius C56-YS93] gi|311216773|gb|ADP75377.1| flagellar hook capping protein [Geobacillus sp. Y4.1MC1] Length = 140 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 34/87 (39%), Positives = 58/87 (66%), Gaps = 5/87 (5%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN---L 79 LG+D FLK+L+ Q+++QDP PM+ E +AQ+A FS +EQ + ++S + L+++ N L Sbjct: 26 LGKDDFLKILLVQLQNQDPLNPMEDKEFIAQMANFSTLEQMINISSMFERLMQTQNNQAL 85 Query: 80 AQASSYIGKNIT--NADGSISGVVNAI 104 + S +IGKN+ + + SGVV ++ Sbjct: 86 LRYSEWIGKNVYWQEEENTKSGVVKSV 112 >gi|216263922|ref|ZP_03435916.1| flagellar hook capping protein [Borrelia afzelii ACA-1] gi|215979966|gb|EEC20788.1| flagellar hook capping protein [Borrelia afzelii ACA-1] Length = 147 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 37/90 (41%), Positives = 56/90 (62%), Gaps = 3/90 (3%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78 +K LG+D FLKLLITQ+++QDPT PMK E +AQ+A FS +EQ M+ + ++L S Sbjct: 32 NKVNLGKDDFLKLLITQLRYQDPTNPMKDKEFIAQMAQFSALEQMANMSKSFEKLSSSLE 91 Query: 79 LAQASSYIGKNITNADGS---ISGVVNAIQ 105 + + +GK I G+ + G V +I+ Sbjct: 92 IRKDLDLLGKVIKFQHGNGEIVEGRVTSIK 121 >gi|203287744|ref|YP_002222759.1| flagellar hook assembly protein [Borrelia recurrentis A1] gi|201084964|gb|ACH94538.1| flagellar hook assembly protein [Borrelia recurrentis A1] Length = 146 Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 29/51 (56%), Positives = 39/51 (76%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73 LG+D FLKLL+TQ+K+QDPTEPMK E ++Q+A FS +EQ MN + + L Sbjct: 35 LGRDDFLKLLLTQLKYQDPTEPMKDKEFISQMAQFSALEQMTNMNKSFENL 85 >gi|114566391|ref|YP_753545.1| flagellar hook capping protein-like protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337326|gb|ABI68174.1| Flagellar hook capping protein-like protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 180 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 41/126 (32%), Positives = 72/126 (57%), Gaps = 13/126 (10%) Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67 N Q S + K L ++AFLKLL+T++K+QDP EP+K E ++Q+A FS +EQ +N Sbjct: 16 NEPQSSKSSKEINKGLDKEAFLKLLLTELKYQDPIEPVKDKEFISQMANFSSLEQMTNLN 75 Query: 68 STLQELLKSNN--------LAQASSYIGKNITNAD----GSISGVVNAIQVSSTGLTAIT 115 S+ +L + N + Q+S+ +G+ + D S +G+++++ V G+ Sbjct: 76 SSFNKLSATLNSGILPGLVMQQSSTMVGREVFYTDPDSGASSNGIISSV-VFREGIPYYV 134 Query: 116 VDNTEI 121 +D+ EI Sbjct: 135 IDDKEI 140 >gi|194014528|ref|ZP_03053145.1| flagellar hook capping protein [Bacillus pumilus ATCC 7061] gi|194013554|gb|EDW23119.1| flagellar hook capping protein [Bacillus pumilus ATCC 7061] Length = 148 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 39/98 (39%), Positives = 57/98 (58%), Gaps = 10/98 (10%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--LK 75 K TLG+D FLK+L+TQ+++QDPT P+ E V QLA FS +EQ MN ++ +L L Sbjct: 22 KKTDTLGKDQFLKILLTQLQNQDPTNPLDDREFVTQLATFSSLEQQTNMNDSITKLNQLM 81 Query: 76 SNNLAQAS------SYIGKNITNA--DGSISGVVNAIQ 105 S +A +IGK ++ D ISG V +++ Sbjct: 82 STFVAHQDPFTTYVGWIGKEVSGKLDDKDISGTVKSVK 119 >gi|94264100|ref|ZP_01287899.1| Flagellar hook capping protein [delta proteobacterium MLMS-1] gi|93455516|gb|EAT05706.1| Flagellar hook capping protein [delta proteobacterium MLMS-1] Length = 223 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 42/108 (38%), Positives = 60/108 (55%), Gaps = 8/108 (7%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDA-----FLKLLITQIKHQDPTEPMKASEQVAQLA 55 M I++ + P K +G D+ F+KL ITQ+++QDP EPM + E +QLA Sbjct: 1 MAIDSMMGPGVPMAEPPNPNKPVGSDSLDRADFMKLFITQLQYQDPMEPMDSYEMASQLA 60 Query: 56 VFSQMEQSVQMNSTLQELL---KSNNLAQASSYIGKNITNADGSISGV 100 FS ME +++M+ +++LL KS N Q IGKNI A IS V Sbjct: 61 QFSNMEATMKMSDNMEKLLDYQKSQNNLQLLGLIGKNIETAGNEISMV 108 >gi|254446081|ref|ZP_05059557.1| flagellar hook capping protein [Verrucomicrobiae bacterium DG1235] gi|198260389|gb|EDY84697.1| flagellar hook capping protein [Verrucomicrobiae bacterium DG1235] Length = 205 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 51/86 (59%), Gaps = 1/86 (1%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79 +K LGQD F KLL TQ+ QDP EPM+ + +AQ+A FS++E + + + + Sbjct: 31 QKALGQDEFFKLLTTQLASQDPLEPMEDTAFIAQMASFSELEMTSNLTKSFDNFNSTQQF 90 Query: 80 AQASSYIGKNITNADGSISGVVNAIQ 105 A A YIGK ++ + G + G V +++ Sbjct: 91 ASAHGYIGKTVSLSSGEV-GEVTSVE 115 >gi|297584042|ref|YP_003699822.1| flagellar hook capping protein [Bacillus selenitireducens MLS10] gi|297142499|gb|ADH99256.1| flagellar hook capping protein [Bacillus selenitireducens MLS10] Length = 161 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 42/123 (34%), Positives = 68/123 (55%), Gaps = 14/123 (11%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74 +K +G+DAFLKLLITQ+++QDP +PM+ E ++Q+A FS +EQ MN + + L Sbjct: 23 AKGTGDSEMGKDAFLKLLITQLQNQDPLDPMEDKEFISQMANFSSLEQMTNMNENMNKFL 82 Query: 75 KSNNLAQASSY---IGKNI------TNADG-----SISGVVNAIQVSSTGLTAITVDNTE 120 +S +Q S+ IGK I N +G ++S +V A++ T +T E Sbjct: 83 ESQQQSQFFSHSDMIGKQIEWQEEVKNENGDKRMETMSAIVQAVKFKDGIATILTESGKE 142 Query: 121 IPI 123 + + Sbjct: 143 LSV 145 >gi|330809243|ref|YP_004353705.1| flagellar hook capping protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377351|gb|AEA68701.1| Putative flagellar hook capping protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 140 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 43/131 (32%), Positives = 72/131 (54%), Gaps = 8/131 (6%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 I E++ T E ++S+ LGQ+ F+KL +T++ QDP EP+ E +AQ+A F+ +EQ Sbjct: 6 IGNELSSTTSELAQSR----LGQEDFIKLFLTELTFQDPLEPINNREFLAQMAQFANLEQ 61 Query: 63 SVQMNSTLQELLKSNNLAQASSYIGKNI---TNADGSISGVVNAIQVSSTGLTAITVDNT 119 + N L+ N +Q+ +G+ + G+ G V AI SSTG ++V T Sbjct: 62 TRITNENTDNLVSMNATSQSLGLLGRQVEVSITTGGTAIGSVTAIAFSSTG-PVLSVKRT 120 Query: 120 EIPITTGIRIS 130 + + T +R+S Sbjct: 121 DGTVLTDVRLS 131 >gi|119953083|ref|YP_945292.1| flagellar basal body rod modification protein [Borrelia turicatae 91E135] gi|119861854|gb|AAX17622.1| basal-body rod modification protein FlgD [Borrelia turicatae 91E135] Length = 144 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 38/93 (40%), Positives = 55/93 (59%), Gaps = 7/93 (7%) Query: 12 QEFSKSKSKK-----TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66 +E S SK ++ LG+D FLKLLITQ+K+QDPT+PMK E +AQ+A FS +EQ M Sbjct: 17 KEISNSKVQRGVKGNNLGRDDFLKLLITQLKYQDPTDPMKDKEFIAQMAQFSALEQMTNM 76 Query: 67 NSTLQELLKSNNLAQASSYIGK--NITNADGSI 97 + + + L + + +GK + DG I Sbjct: 77 SKSFESLSSVLGINKDLDLLGKIVEFEHVDGEI 109 >gi|90422629|ref|YP_530999.1| flagellar basal body rod modification protein [Rhodopseudomonas palustris BisB18] gi|90104643|gb|ABD86680.1| flagellar hook capping protein [Rhodopseudomonas palustris BisB18] Length = 135 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 40/111 (36%), Positives = 65/111 (58%), Gaps = 3/111 (2%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82 +G + FL+LLI Q+++QDPT P S+ ++Q A S +EQ++Q N L LL ++ L+QA Sbjct: 25 IGYNDFLQLLIAQMRNQDPTSPTDMSQYMSQFAQLSSVEQAIQTNLKLDALLSTSALSQA 84 Query: 83 SSYIGK--NITNADG-SISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 IG+ + T DG S +G + A+ + G A + ++ + GI IS Sbjct: 85 EGLIGRTASFTAEDGQSSTGKITAVHIIQGGAVATLDNGVQVQLGPGITIS 135 >gi|119477954|ref|ZP_01618054.1| Flagellar hook capping protein [marine gamma proteobacterium HTCC2143] gi|119448867|gb|EAW30109.1| Flagellar hook capping protein [marine gamma proteobacterium HTCC2143] Length = 224 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 40/110 (36%), Positives = 67/110 (60%), Gaps = 12/110 (10%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKS 76 K+ LGQD FL+L++TQ+++Q+P +P SE VAQLA FS +E ++N+T++ +S Sbjct: 26 KQELGQDVFLELMVTQMRNQNPLDPQDNSEFVAQLAQFSSVEGLDKLNNTMEGFVGSFQS 85 Query: 77 NNLAQASSYIGKNIT--------NADGSISGVVNAIQVSSTGLTAITVDN 118 N QAS+ +G+++ ADG ++G + Q S+ L+ I D+ Sbjct: 86 NQALQASALVGRSVKVDSDTSYLAADGRVAGTIELPQ-STDDLSVIVYDS 134 >gi|225620906|ref|YP_002722164.1| flagellar hook capping protein [Brachyspira hyodysenteriae WA1] gi|225215726|gb|ACN84460.1| flagellar hook capping protein [Brachyspira hyodysenteriae WA1] Length = 264 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 4/117 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 Q F + ++ +LG+DAFLKLL Q+ HQDP PM + +AQLA FS +EQ ++N L Sbjct: 27 QHNFQRDPTQNSLGKDAFLKLLTVQMSHQDPLSPMDNRDMIAQLAQFSSVEQMTEVNKNL 86 Query: 71 QELLKSNNLAQASSYIGKNI---TNADGSISGVVNAIQVSSTGLT-AITVDNTEIPI 123 + + S +GK++ A G V + + TG+ A+ DN I + Sbjct: 87 DSMKTFYSSQTGYSMLGKSVEVMDEAGNRFLGPVEMVMENDTGVALAVRTDNGLITV 143 >gi|219684639|ref|ZP_03539582.1| flagellar hook capping protein [Borrelia garinii PBr] gi|219672001|gb|EED29055.1| flagellar hook capping protein [Borrelia garinii PBr] Length = 147 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 2/81 (2%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78 +K LG+D FLKLLITQ+++QDPT PMK E ++Q+A FS +EQ M+ + + L S Sbjct: 32 NKVNLGKDDFLKLLITQLRYQDPTNPMKDKEFISQMAQFSALEQMTNMSKSFERLSSSLG 91 Query: 79 LAQASSYIGKNIT--NADGSI 97 + + +GK I + DG + Sbjct: 92 IRRDLDLLGKVIKFQHGDGEV 112 >gi|154686044|ref|YP_001421205.1| flagellar basal body rod modification protein [Bacillus amyloliquefaciens FZB42] gi|154351895|gb|ABS73974.1| YlxG [Bacillus amyloliquefaciens FZB42] Length = 146 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 53/77 (68%), Gaps = 1/77 (1%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78 S LG+D FLK+L+TQ+++QDP P+ E ++Q+A FS +EQ + MN+T+ + +++ + Sbjct: 27 SSTNLGKDEFLKILMTQVQNQDPLNPVDDKEFISQMATFSSLEQMMNMNTTMTKFVENQD 86 Query: 79 -LAQASSYIGKNITNAD 94 ++IGKN+T +D Sbjct: 87 PFTMYVNWIGKNVTFSD 103 >gi|219685744|ref|ZP_03540555.1| flagellar hook capping protein [Borrelia garinii Far04] gi|219672683|gb|EED29711.1| flagellar hook capping protein [Borrelia garinii Far04] Length = 147 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 34/81 (41%), Positives = 52/81 (64%), Gaps = 2/81 (2%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78 +K LG+D FLKLLITQ+++QDPT PMK E ++Q+A FS +EQ M+ + ++L S Sbjct: 32 NKVNLGKDDFLKLLITQLRYQDPTNPMKDKEFISQMAQFSALEQMTNMSKSFEKLSSSLG 91 Query: 79 LAQASSYIGKNIT--NADGSI 97 + + +GK I + DG + Sbjct: 92 IRRDLDLLGKVIKFQHGDGEV 112 >gi|323700160|ref|ZP_08112072.1| flagellar hook capping protein [Desulfovibrio sp. ND132] gi|323460092|gb|EGB15957.1| flagellar hook capping protein [Desulfovibrio desulfuricans ND132] Length = 250 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 36/85 (42%), Positives = 51/85 (60%), Gaps = 10/85 (11%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN- 67 PT+ E S L QDAFL +L+ Q+ HQDP PM+ +E +QLA FS +EQ +N Sbjct: 24 PTEHETS-------LDQDAFLSILVAQLTHQDPLNPMEDTEMTSQLAEFSSLEQLTNIND 76 Query: 68 --STLQELLKSNNLAQASSYIGKNI 90 STL E + +++ A S+IGK + Sbjct: 77 GISTLNETMSQSDILTAVSFIGKEV 101 >gi|212639560|ref|YP_002316080.1| flagellar basal body rod modification protein [Anoxybacillus flavithermus WK1] gi|212561040|gb|ACJ34095.1| Flagellar hook capping protein [Anoxybacillus flavithermus WK1] Length = 163 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 68/129 (52%), Gaps = 31/129 (24%) Query: 5 TEVNPT-----QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59 T ++P+ +Q + K +LG+D FLK+LI Q++HQDP PM+ E ++Q+A FS Sbjct: 10 TAIDPSLLLSQRQVAQRETGKSSLGKDDFLKILIAQLQHQDPLNPMEDREFISQMANFSS 69 Query: 60 MEQSVQMNSTLQELLKSN------------------------NLAQASSYIGKNITNADG 95 +EQ V M++ L + +++ +LAQ S +IGK +T + Sbjct: 70 LEQMVNMSNMLSKFIETQTGTSEKLVGTLDALQKLIQQQSAPSLAQYSEWIGKTVTWDEQ 129 Query: 96 SISGVVNAI 104 SGVV A+ Sbjct: 130 --SGVVRAV 136 >gi|288573022|ref|ZP_06391379.1| flagellar hook capping protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568763|gb|EFC90320.1| flagellar hook capping protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 150 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 48/72 (66%), Gaps = 1/72 (1%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79 K + +D FLKL I Q+K+QDP EPM +E AQ + F+ +EQ + MNS+++E+L S L Sbjct: 23 KSAMDKDDFLKLYIEQLKNQDPLEPMDTNEMAAQFSQFTTVEQLMNMNSSMEEML-SLQL 81 Query: 80 AQASSYIGKNIT 91 A SYIG +T Sbjct: 82 GNAVSYIGFEVT 93 >gi|303248691|ref|ZP_07334945.1| flagellar hook capping protein [Desulfovibrio fructosovorans JJ] gi|302489947|gb|EFL49873.1| flagellar hook capping protein [Desulfovibrio fructosovorans JJ] Length = 245 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 33/72 (45%), Positives = 50/72 (69%), Gaps = 3/72 (4%) Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ 81 +LGQDAFL+LL+TQ+++QDP PM + VA+LA FS +EQ ++N+ + +L N +Q Sbjct: 25 SLGQDAFLQLLVTQLQYQDPLSPMDDKDFVAELAQFSSLEQLTEINTGIDKLADLNTQSQ 84 Query: 82 ---ASSYIGKNI 90 A ++IGK I Sbjct: 85 VMGAVNFIGKTI 96 >gi|302338084|ref|YP_003803290.1| flagellar hook capping protein [Spirochaeta smaragdinae DSM 11293] gi|301635269|gb|ADK80696.1| flagellar hook capping protein [Spirochaeta smaragdinae DSM 11293] Length = 149 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 38/89 (42%), Positives = 59/89 (66%), Gaps = 8/89 (8%) Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK-SNNL 79 ++LG+D FLKLL+TQ+++QDPT+PM+ E +AQ+A FS +E QMN+ Q+ + N L Sbjct: 34 QSLGKDDFLKLLLTQLQYQDPTKPMEDKEFIAQMAQFSSLE---QMNNLSQQFVSVKNTL 90 Query: 80 AQASSY--IGK--NITNADGSISGVVNAI 104 + ++Y IG+ +I D I G V A+ Sbjct: 91 GRNAAYDLIGRQVDILQGDQKIHGTVEAV 119 >gi|330953720|gb|EGH53980.1| flagellar basal body rod modification protein [Pseudomonas syringae Cit 7] Length = 229 Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 38/91 (41%), Positives = 60/91 (65%), Gaps = 6/91 (6%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 +NT NPT +K+ S TLG+D+FL+LL+TQ+K+Q+P +P ++ VAQLA FS +E Sbjct: 16 LNTLQNPTP---TKTDSTGTLGKDSFLQLLVTQMKNQNPLDPQDNTQFVAQLAQFSSLES 72 Query: 63 SVQMNSTLQEL---LKSNNLAQASSYIGKNI 90 + ST+ + KS+ QASS +G+++ Sbjct: 73 MQNLTSTVDTIASSYKSSQALQASSLVGRSV 103 >gi|302872564|ref|YP_003841200.1| flagellar hook capping protein [Caldicellulosiruptor obsidiansis OB47] gi|302575423|gb|ADL43214.1| flagellar hook capping protein [Caldicellulosiruptor obsidiansis OB47] Length = 171 Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 46/116 (39%), Positives = 68/116 (58%), Gaps = 13/116 (11%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 +Q + S K LG+ FL LL+TQ+++QDP +PM+ E VAQLA FS +EQ +N + Sbjct: 17 KQGLAVSSEKNILGKQEFLNLLVTQLRYQDPLKPMEDKEFVAQLAQFSALEQMQNLNQSF 76 Query: 71 QELLKSNNLAQASSYIGKNI---TNADG--SISGVVNAIQVSSTGLTAITVDNTEI 121 ELLK A S IG+ I + DG I G V++I+V + + + V+ TE+ Sbjct: 77 -ELLK------AQSMIGRYIVATSTQDGLKQIEGRVDSIRVDGSKV-FLKVNGTEV 124 >gi|94267502|ref|ZP_01290901.1| Flagellar hook capping protein [delta proteobacterium MLMS-1] gi|93451979|gb|EAT02689.1| Flagellar hook capping protein [delta proteobacterium MLMS-1] Length = 223 Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 41/108 (37%), Positives = 62/108 (57%), Gaps = 8/108 (7%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDA-----FLKLLITQIKHQDPTEPMKASEQVAQLA 55 M I++ + P + + K +G D+ F+KL ITQ+++QDP +PM + E +QLA Sbjct: 1 MAIDSMMGPGVPMAEPAGAIKPVGSDSLDRADFMKLFITQLQYQDPMQPMDSYEMASQLA 60 Query: 56 VFSQMEQSVQMNSTLQELL---KSNNLAQASSYIGKNITNADGSISGV 100 FS ME +++M+ +++LL KS N Q IGKNI A IS V Sbjct: 61 QFSNMEATMKMSDNMEKLLDYQKSQNNLQLLGLIGKNIETAGNEISMV 108 >gi|239826620|ref|YP_002949244.1| flagellar basal body rod modification protein [Geobacillus sp. WCH70] gi|239806913|gb|ACS23978.1| flagellar hook capping protein [Geobacillus sp. WCH70] Length = 140 Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 59/87 (67%), Gaps = 5/87 (5%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN---L 79 LG+D FLK+L+ Q+++QDP PM+ E +AQ+A FS +EQ + ++S +++ +K+ + L Sbjct: 26 LGKDDFLKILLVQLQNQDPLNPMEDKEFIAQMASFSSLEQMINISSMIEQFIKTQHDHAL 85 Query: 80 AQASSYIGKNIT--NADGSISGVVNAI 104 + S +IGKN+ + + SG+V ++ Sbjct: 86 LRYSEWIGKNVYWQEDENTKSGIVQSV 112 >gi|114320056|ref|YP_741739.1| flagellar hook capping protein [Alkalilimnicola ehrlichii MLHE-1] gi|114226450|gb|ABI56249.1| flagellar hook capping protein [Alkalilimnicola ehrlichii MLHE-1] Length = 222 Score = 66.6 bits (161), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 39/108 (36%), Positives = 63/108 (58%), Gaps = 16/108 (14%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVF---SQME 61 + PTQ+E LGQD FLKL+ITQ+++QDP PM++ E ++Q+A F S M+ Sbjct: 12 SRAQPTQRE-----PAGELGQDDFLKLMITQLQNQDPMNPMESGEFMSQIASFTTASGMD 66 Query: 62 QSVQMNSTLQELLKSNNLAQASSYIGKNI--------TNADGSISGVV 101 Q + S Q+ +++N QA+S +G+ + ADG ++G+V Sbjct: 67 QLQKSFSEFQQDMRANQALQAASLVGREVLVETDAGRLPADGEMTGIV 114 >gi|222530132|ref|YP_002574014.1| flagellar hook capping protein [Caldicellulosiruptor bescii DSM 6725] gi|222456979|gb|ACM61241.1| flagellar hook capping protein [Caldicellulosiruptor bescii DSM 6725] Length = 164 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/123 (39%), Positives = 73/123 (59%), Gaps = 13/123 (10%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 NT ++ + Q + S K LG+ FL LL+TQ+++QDP +PM+ E VAQLA FS +EQ Sbjct: 9 NTNISNSTQGSATSLGKNVLGKQEFLNLLVTQLRYQDPLKPMEDKEFVAQLAQFSALEQM 68 Query: 64 VQMNSTLQELLKSNNLAQASSYIGKNI--TN-ADGS--ISGVVNAIQVSSTGLTAITVDN 118 +N + E LK A S IG+ + TN AD S I G +++I+V + + + V+ Sbjct: 69 QNLNESF-EFLK------AQSMIGRYVVATNPADTSKTIEGRIDSIRVDGSKV-YLKVNG 120 Query: 119 TEI 121 TE+ Sbjct: 121 TEV 123 >gi|15022423|dbj|BAB62244.1| flagellar protein [Treponema medium] Length = 159 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 40/106 (37%), Positives = 66/106 (62%), Gaps = 6/106 (5%) Query: 1 MEINTEVNPTQQEFSKS-KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59 ME++T +N +Q F + K K+ LG+D FL+LL+ Q+ HQDPT P++ ++ VAQ+A F+ Sbjct: 29 MEVDT-IN--KQNFPEGRKPKQELGKDDFLQLLVAQLTHQDPTSPLEDTQFVAQMAQFTS 85 Query: 60 MEQSVQMNSTLQELLKSNNLAQASSYIGK--NITNADGSISGVVNA 103 +EQ MN L + + A + +GK +I + G++SG + A Sbjct: 86 LEQLTNMNQNFGMLNRLIGDSSAVNVVGKQVDIEQSSGTVSGTITA 131 >gi|187918158|ref|YP_001883721.1| flagellar basal body rod modification protein [Borrelia hermsii DAH] gi|119861006|gb|AAX16801.1| basal-body rod modification protein FlgD [Borrelia hermsii DAH] Length = 144 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 29/51 (56%), Positives = 39/51 (76%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73 LG+D FLKLLITQ+K+QDPT+PMK E +AQ+A FS +EQ M+ + + L Sbjct: 33 LGRDDFLKLLITQLKYQDPTDPMKDKEFIAQMAQFSALEQMTNMSKSFESL 83 >gi|77460470|ref|YP_349977.1| flagellar basal body rod modification protein [Pseudomonas fluorescens Pf0-1] gi|77384473|gb|ABA75986.1| flagellar biosynthesis protein, initiation of hook assembly [Pseudomonas fluorescens Pf0-1] Length = 242 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 34/71 (47%), Positives = 49/71 (69%), Gaps = 3/71 (4%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA-- 80 LG+DAFL+LL+TQ+K+Q+P +P S VAQLA FS +E +NST+ L + N + Sbjct: 44 LGKDAFLQLLVTQLKNQNPLDPQDNSAFVAQLAQFSSLEGITTLNSTVSSLAGNYNSSQA 103 Query: 81 -QASSYIGKNI 90 QASS +G+N+ Sbjct: 104 LQASSLVGRNV 114 >gi|71737896|ref|YP_275564.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|289627762|ref|ZP_06460716.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651648|ref|ZP_06482991.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. aesculi str. 2250] gi|298487858|ref|ZP_07005898.1| Flagellar basal-body rod modification protein flgD [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|71558449|gb|AAZ37660.1| flagellar basal-body rod modification protein FlgD [Pseudomonas syringae pv. phaseolicola 1448A] gi|298157583|gb|EFH98663.1| Flagellar basal-body rod modification protein flgD [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320325092|gb|EFW81161.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. glycinea str. B076] gi|320329351|gb|EFW85344.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330866421|gb|EGH01130.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330880521|gb|EGH14670.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330889086|gb|EGH21747.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. mori str. 301020] gi|330986467|gb|EGH84570.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. lachrymans str. M301315] Length = 228 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 38/91 (41%), Positives = 59/91 (64%), Gaps = 6/91 (6%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 +NT NPT + + S TLG+DAFL+LL+TQ+K+Q+P +P ++ VAQLA FS +E Sbjct: 15 LNTLQNPTP---TATNSTGTLGKDAFLQLLVTQMKNQNPLDPQDNTQFVAQLAQFSSLES 71 Query: 63 SVQMNSTLQEL---LKSNNLAQASSYIGKNI 90 + ST+ + KS+ QASS +G+++ Sbjct: 72 MQNLTSTVDTIATSYKSSQALQASSLVGRSV 102 >gi|126653742|ref|ZP_01725660.1| flagellar basal body rod modification protein D [Bacillus sp. B14905] gi|126589706|gb|EAZ83842.1| flagellar basal body rod modification protein D [Bacillus sp. B14905] Length = 229 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 33/71 (46%), Positives = 46/71 (64%), Gaps = 3/71 (4%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82 LG+DAFL+LLITQ++HQDPT PM E ++Q+A FS +EQ M ++ LL S Q Sbjct: 35 LGKDAFLQLLITQLQHQDPTNPMNDREFISQMAQFSSLEQMQNMTKAVESLLASQQQTQM 94 Query: 83 SSY---IGKNI 90 +Y +GK + Sbjct: 95 MNYATFVGKEV 105 >gi|257484950|ref|ZP_05638991.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331011041|gb|EGH91097.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 228 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 38/91 (41%), Positives = 59/91 (64%), Gaps = 6/91 (6%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 +NT NPT + + S TLG+DAFL+LL+TQ+K+Q+P +P ++ VAQLA FS +E Sbjct: 15 LNTLQNPTP---TATNSTGTLGKDAFLQLLVTQMKNQNPLDPQDNTQFVAQLAQFSSLES 71 Query: 63 SVQMNSTLQEL---LKSNNLAQASSYIGKNI 90 + ST+ + KS+ QASS +G+++ Sbjct: 72 MQNLTSTVDTIATSYKSSQALQASSLVGRSV 102 >gi|312621575|ref|YP_004023188.1| flagellar hook capping protein [Caldicellulosiruptor kronotskyensis 2002] gi|312202042|gb|ADQ45369.1| flagellar hook capping protein [Caldicellulosiruptor kronotskyensis 2002] Length = 164 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/123 (39%), Positives = 73/123 (59%), Gaps = 13/123 (10%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 NT ++ + Q + S K LG+ FL LL+TQ+++QDP +PM+ E VAQLA FS +EQ Sbjct: 9 NTNISNSTQGSATSLGKNVLGKQEFLNLLVTQLRYQDPLKPMEDKEFVAQLAQFSALEQM 68 Query: 64 VQMNSTLQELLKSNNLAQASSYIGKNI--TN-ADGS--ISGVVNAIQVSSTGLTAITVDN 118 +N + E LK A S IG+ + TN AD S I G +++I+V + + + V+ Sbjct: 69 QNLNESF-EFLK------AQSMIGRYVVATNPADTSKTIEGRIDSIRVDGSKV-YLKVNG 120 Query: 119 TEI 121 TE+ Sbjct: 121 TEV 123 >gi|169827127|ref|YP_001697285.1| hypothetical protein Bsph_1557 [Lysinibacillus sphaericus C3-41] gi|168991615|gb|ACA39155.1| Hypothetical ylxG protein [Lysinibacillus sphaericus C3-41] Length = 228 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 33/71 (46%), Positives = 46/71 (64%), Gaps = 3/71 (4%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82 LG+DAFL+LLITQ++HQDPT PM E ++Q+A FS +EQ M ++ LL S Q Sbjct: 34 LGKDAFLQLLITQLQHQDPTNPMNDREFISQMAQFSSLEQMQNMTKAVESLLASQQQTQM 93 Query: 83 SSY---IGKNI 90 +Y +GK + Sbjct: 94 MNYATFVGKEV 104 >gi|203284205|ref|YP_002221945.1| flagellar hook assembly protein [Borrelia duttonii Ly] gi|201083648|gb|ACH93239.1| flagellar hook assembly protein [Borrelia duttonii Ly] Length = 146 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 28/51 (54%), Positives = 39/51 (76%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73 LG+D FLKLL+TQ+K+QDPTEPMK E ++Q+A FS +EQ M+ + + L Sbjct: 35 LGRDDFLKLLLTQLKYQDPTEPMKDKEFISQMAQFSALEQMTNMSKSFENL 85 >gi|45657071|ref|YP_001157.1| flagellar hook assembly scaffolding protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45600308|gb|AAS69794.1| flagellar hook assembly scaffolding protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 264 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 41/107 (38%), Positives = 62/107 (57%), Gaps = 8/107 (7%) Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA 80 K+LG+D FLKLLITQ+ QDPT P+K + +AQ+A FS +E QMN+ + K N Sbjct: 50 KSLGKDDFLKLLITQLSSQDPTNPVKDQDFIAQMAQFSSLE---QMNNISNGIQKMGN-R 105 Query: 81 QASSYIGKNITNAD----GSISGVVNAIQVSSTGLTAITVDNTEIPI 123 Q+ S +GK ++ D +I+G+ A+ G T + V+ I + Sbjct: 106 QSFSLVGKLVSGPDFVNGENIAGIAGALFFDGEGKTFVRVNGRSIDV 152 >gi|300870372|ref|YP_003785243.1| flagellar hook capping protein FlgD [Brachyspira pilosicoli 95/1000] gi|300688071|gb|ADK30742.1| flagellar hook capping protein, FlgD [Brachyspira pilosicoli 95/1000] Length = 233 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 36/104 (34%), Positives = 55/104 (52%), Gaps = 3/104 (2%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 Q F + +K +LG+D FLKLL Q+ HQDP PM + +AQLA FS +EQ ++N L Sbjct: 27 QHNFERDPAKNSLGKDDFLKLLTVQMSHQDPLSPMDNRDMIAQLAQFSSVEQMTEVNKNL 86 Query: 71 QELLKSNNLAQASSYIGKNI---TNADGSISGVVNAIQVSSTGL 111 + + + S +GK++ A G V + + TG+ Sbjct: 87 ESMKTFYSSQSGYSMLGKSVEVMDEAGNRFLGPVEMVMENDTGV 130 >gi|24215549|ref|NP_713030.1| flagellar hook assembly scaffolding protein [Leptospira interrogans serovar Lai str. 56601] gi|24196694|gb|AAN50048.1| flagellar hook assembly scaffolding protein [Leptospira interrogans serovar Lai str. 56601] Length = 264 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 41/107 (38%), Positives = 62/107 (57%), Gaps = 8/107 (7%) Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA 80 K+LG+D FLKLLITQ+ QDPT P+K + +AQ+A FS +E QMN+ + K N Sbjct: 50 KSLGKDDFLKLLITQLSSQDPTNPVKDQDFIAQMAQFSSLE---QMNNISNGIQKMGN-R 105 Query: 81 QASSYIGKNITNAD----GSISGVVNAIQVSSTGLTAITVDNTEIPI 123 Q+ S +GK ++ D +I+G+ A+ G T + V+ I + Sbjct: 106 QSFSLVGKLVSGPDFVNGENIAGIAGALFFDGEGKTFVRVNGRSIDV 152 >gi|158320519|ref|YP_001513026.1| flagellar hook capping protein [Alkaliphilus oremlandii OhILAs] gi|158140718|gb|ABW19030.1| flagellar hook capping protein [Alkaliphilus oremlandii OhILAs] Length = 141 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 40/114 (35%), Positives = 67/114 (58%), Gaps = 8/114 (7%) Query: 12 QEFSKSKSKK---TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 +++S ++ KK LG+DAFL LL+TQ+K+QDP PM + +AQ+A FS +EQ +N+ Sbjct: 15 RDYSGNQEKKQTDALGKDAFLNLLVTQLKNQDPLNPMDDRDFIAQMAQFSSLEQMQNLNT 74 Query: 69 TLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIP 122 TL +N + +I + N S + +V+ + + GL +T +N E+P Sbjct: 75 TL-----TNTQSSIMEHITQMNNNFVKSQTNIVDQLVKINEGLRKLTGENPEVP 123 >gi|308068659|ref|YP_003870264.1| flagellar hook capping protein [Paenibacillus polymyxa E681] gi|305857938|gb|ADM69726.1| Flagellar hook capping protein [Paenibacillus polymyxa E681] Length = 177 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 33/77 (42%), Positives = 54/77 (70%), Gaps = 2/77 (2%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74 + +K KT+G+D FLK+LITQ+++QDP +P++ E +AQ+A FS +EQ + +++ L L Sbjct: 25 ASAKDTKTMGKDQFLKILITQLQNQDPMQPLEDKEFIAQMAQFSSVEQLMNISTQLNALG 84 Query: 75 KSNNLAQASSYIGKNIT 91 +S L AS IGK ++ Sbjct: 85 QS--LGTASGLIGKEVS 99 >gi|310641550|ref|YP_003946308.1| flagellar hook capping protein [Paenibacillus polymyxa SC2] gi|309246500|gb|ADO56067.1| Flagellar hook capping protein [Paenibacillus polymyxa SC2] Length = 177 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 33/77 (42%), Positives = 54/77 (70%), Gaps = 2/77 (2%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74 + +K KT+G+D FLK+LITQ+++QDP +P++ E +AQ+A FS +EQ + +++ L L Sbjct: 25 ASAKDTKTMGKDQFLKILITQLQNQDPMQPLEDKEFIAQMAQFSSVEQLMNISTQLNALG 84 Query: 75 KSNNLAQASSYIGKNIT 91 +S L AS IGK ++ Sbjct: 85 QS--LGTASGLIGKEVS 99 >gi|167464162|ref|ZP_02329251.1| Flagellar hook capping protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 197 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/123 (34%), Positives = 69/123 (56%), Gaps = 10/123 (8%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75 +S +LG+D FLK+LI Q+ +Q+P +PM E +AQ+A F+ +EQ M + +L + Sbjct: 34 RSGGNSSLGKDDFLKILIAQLVNQNPMDPMNDKEFIAQMAQFTAVEQMTFMAEQMYDLRQ 93 Query: 76 SNNLAQASSYIGKNIT----NADGSI---SGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128 S L AS+ IGK+++ N + GVV+AI + G+ + + EIPI R Sbjct: 94 S--LGGASTLIGKHVSYLTVNEKQEVITKQGVVDAI-IMKNGMAHVVIGKEEIPIDLITR 150 Query: 129 ISN 131 + + Sbjct: 151 VGD 153 >gi|297544703|ref|YP_003677005.1| flagellar hook capping protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842478|gb|ADH60994.1| flagellar hook capping protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 131 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 47/131 (35%), Positives = 74/131 (56%), Gaps = 16/131 (12%) Query: 1 MEINTEVNPTQ-QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59 ME+NT + + S++ S LG+D FL+LL+ Q+++QDP +PM E +AQLA FS Sbjct: 1 MEVNTNYSFSNVYNTSETTSNDQLGKDDFLQLLVVQLENQDPLDPMDDKELIAQLAQFSI 60 Query: 60 MEQSVQMNSTLQELLKSNNLAQASSYIGKN----ITNADG---SISGVVNAIQVSSTGLT 112 +EQ +Q L S N +A + IGKN IT+ +G S+ G V+A+ G Sbjct: 61 LEQ-------MQNLNVSFNAVRAINLIGKNVYATITDDNGNSTSVVGNVDAV-YKQNGEY 112 Query: 113 AITVDNTEIPI 123 + V+ ++P+ Sbjct: 113 YLEVNGIDVPL 123 >gi|330811236|ref|YP_004355698.1| basal-body rod modification protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379344|gb|AEA70694.1| Putative basal-body rod modification protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 240 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 34/74 (45%), Positives = 50/74 (67%), Gaps = 3/74 (4%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79 KK LG+DAFL+LL+TQ+K+Q+P EP E VAQLA FS +E +N T+ + + N Sbjct: 40 KKELGKDAFLQLLVTQLKNQNPLEPQDNGEFVAQLAQFSSLEGITTLNETVSGIAGNYNS 99 Query: 80 A---QASSYIGKNI 90 + QASS +G+++ Sbjct: 100 SQALQASSLVGRSV 113 >gi|42524756|ref|NP_970136.1| basal-body rod modification protein flgD [Bdellovibrio bacteriovorus HD100] gi|39576966|emb|CAE78195.1| basal-body rod modification protein flgD [Bdellovibrio bacteriovorus HD100] Length = 334 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 38/83 (45%), Positives = 52/83 (62%), Gaps = 6/83 (7%) Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNN 78 +L +DAF KL++TQ+K+QDPT P+K+ E AQLA FS +EQ MN +L E+ K + Sbjct: 67 SLDKDAFFKLMLTQMKNQDPTNPLKSHEMAAQLASFSSLEQMQNMNKSLDEMKNGQKPSE 126 Query: 79 LAQASSYIGKNITNADGSISGVV 101 QA + IGK + G S VV Sbjct: 127 NFQALNLIGKAVA---GDSSKVV 146 >gi|146296287|ref|YP_001180058.1| flagellar hook capping protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409863|gb|ABP66867.1| flagellar hook capping protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 169 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 56/88 (63%), Gaps = 2/88 (2%) Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ 81 TLG+ FL LL+TQ+++QDP +PM+ E VAQLA FS +EQ +N + EL+K+ N+ Sbjct: 29 TLGKQEFLNLLVTQLRYQDPLKPMEDKEFVAQLAQFSALEQMQNLNESF-ELIKAQNMI- 86 Query: 82 ASSYIGKNITNADGSISGVVNAIQVSST 109 + N ++ ++ G V++I+V + Sbjct: 87 GRYVVATNPSDTSKTVEGRVDSIRVDGS 114 >gi|239815262|ref|YP_002944172.1| flagellar hook capping protein [Variovorax paradoxus S110] gi|239801839|gb|ACS18906.1| flagellar hook capping protein [Variovorax paradoxus S110] Length = 133 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 59/88 (67%), Gaps = 2/88 (2%) Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ 81 +LG + FLK+L+TQ+ +QDP +PM E +AQ+A F+ +EQ+ Q+N+ ++ L+ + Q Sbjct: 18 SLGMEDFLKILLTQLTYQDPLKPMDNQEFMAQMAQFTSLEQTQQLNNKIETLITNQAALQ 77 Query: 82 ASSYIGK--NITNADGSISGVVNAIQVS 107 + IGK ++ G+++G V+A+ +S Sbjct: 78 SVGLIGKTVDVNTPTGAVTGTVSALSLS 105 >gi|239906012|ref|YP_002952751.1| flagellar basal-body rod modification protein FlgD [Desulfovibrio magneticus RS-1] gi|239795876|dbj|BAH74865.1| flagellar basal-body rod modification protein FlgD [Desulfovibrio magneticus RS-1] Length = 232 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 33/71 (46%), Positives = 47/71 (66%), Gaps = 3/71 (4%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS---TLQELLKSNNL 79 LG DAFL+LL+TQ+++QDP +PM E VA+LA FS +EQ ++NS L L + + Sbjct: 27 LGMDAFLQLLVTQLQYQDPLDPMDDKEFVAELAQFSSLEQLTEINSGIEGLSTLTQEQQM 86 Query: 80 AQASSYIGKNI 90 A ++IGK I Sbjct: 87 IGAVNFIGKTI 97 >gi|242277988|ref|YP_002990117.1| flagellar hook capping protein [Desulfovibrio salexigens DSM 2638] gi|242120882|gb|ACS78578.1| flagellar hook capping protein [Desulfovibrio salexigens DSM 2638] Length = 220 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 33/73 (45%), Positives = 46/73 (63%), Gaps = 3/73 (4%) Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA 80 K L +DAFLKL +TQ+K+QDP PM EQ+AQLA FS +E+ ++ + L K+ N Sbjct: 22 KDLNKDAFLKLFVTQLKNQDPVNPMDNKEQLAQLAQFSTVERLTNISKAMDGLTKTVNAM 81 Query: 81 ---QASSYIGKNI 90 A+ YIGK + Sbjct: 82 MGLNATGYIGKTV 94 >gi|160880842|ref|YP_001559810.1| flagellar hook capping protein [Clostridium phytofermentans ISDg] gi|160429508|gb|ABX43071.1| flagellar hook capping protein [Clostridium phytofermentans ISDg] Length = 275 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 39/92 (42%), Positives = 59/92 (64%), Gaps = 14/92 (15%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82 LG+DAFL+LL+ Q+++QDP P +E V+QLA FSQ+E+ LQ L S + +QA Sbjct: 33 LGKDAFLQLLVCQMQNQDPLNPSTDTEFVSQLATFSQLEE-------LQNLTASTDKSQA 85 Query: 83 SSYIGKNI----TNADGS---ISGVVNAIQVS 107 S +GK++ T+++G ISG V+ I +S Sbjct: 86 FSLVGKDVILNATDSNGRTTYISGTVDFINMS 117 >gi|70731824|ref|YP_261566.1| flagellar basal body rod modification protein [Pseudomonas fluorescens Pf-5] gi|68346123|gb|AAY93729.1| basal-body rod modification protein FlgD [Pseudomonas fluorescens Pf-5] Length = 242 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 35/90 (38%), Positives = 56/90 (62%), Gaps = 3/90 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 NT + + + K++LG+DAFLKLL+TQ+ +Q+P +P S VAQLA FS +E Sbjct: 25 NTSADGLAAATNSATGKQSLGKDAFLKLLVTQLNNQNPLDPQDNSAFVAQLAQFSTLEGI 84 Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNI 90 +NS++ + KS+ QASS +G+++ Sbjct: 85 TTLNSSVNAITGNYKSSQALQASSLVGRSV 114 >gi|16078691|ref|NP_389510.1| flagellar basal body rod modification protein [Bacillus subtilis subsp. subtilis str. 168] gi|221309505|ref|ZP_03591352.1| flagellar basal body rod modification protein [Bacillus subtilis subsp. subtilis str. 168] gi|221313829|ref|ZP_03595634.1| flagellar basal body rod modification protein [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318752|ref|ZP_03600046.1| flagellar basal body rod modification protein [Bacillus subtilis subsp. subtilis str. JH642] gi|221323024|ref|ZP_03604318.1| flagellar basal body rod modification protein [Bacillus subtilis subsp. subtilis str. SMY] gi|321315394|ref|YP_004207681.1| flagellar basal body rod modification protein [Bacillus subtilis BSn5] gi|140659|sp|P23455|YLXG_BACSU RecName: Full=FlaA locus uncharacterized protein ylxG; AltName: Full=ORF 8 gi|39911|emb|CAA39527.1| unnamed protein product [Bacillus subtilis subsp. subtilis str. 168] gi|2634000|emb|CAB13501.1| flagellar hook assembly protein [Bacillus subtilis subsp. subtilis str. 168] gi|320021668|gb|ADV96654.1| flagellar basal body rod modification protein [Bacillus subtilis BSn5] Length = 140 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 65/110 (59%), Gaps = 5/110 (4%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 S + +LG+D FLK+L+TQ+++QDP P+ E ++Q+A FS +EQ + +N+T+ + +++ Sbjct: 18 STNNSSLGKDEFLKILMTQVQNQDPLNPIDDKEFISQMATFSSLEQMMNLNTTMTQFVEN 77 Query: 77 NN-LAQASSYIGKNITNADG----SISGVVNAIQVSSTGLTAITVDNTEI 121 + ++GK ++ DG +G V++++ + D TEI Sbjct: 78 QDPFTTYVDWMGKEVSWTDGKSATDKTGTVSSVKHFKGNYYLVLDDGTEI 127 >gi|289679030|ref|ZP_06499920.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. syringae FF5] gi|330899400|gb|EGH30819.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. japonica str. M301072PT] gi|330943206|gb|EGH45613.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. pisi str. 1704B] gi|330975975|gb|EGH76041.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 229 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 37/91 (40%), Positives = 59/91 (64%), Gaps = 6/91 (6%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 +NT NPT + + S TLG+D+FL+LL+TQ+K+Q+P +P ++ VAQLA FS +E Sbjct: 16 LNTLQNPTP---TATNSTGTLGKDSFLQLLVTQMKNQNPLDPQDNTQFVAQLAQFSSLES 72 Query: 63 SVQMNSTLQEL---LKSNNLAQASSYIGKNI 90 + ST+ + KS+ QASS +G+++ Sbjct: 73 MQNLTSTVDTIASSYKSSQALQASSLVGRSV 103 >gi|301168106|emb|CBW27692.1| putative basal-body rod modification protein [Bacteriovorax marinus SJ] Length = 281 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 3/82 (3%) Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 Q+F +K LG+D FLKLL Q+ +QDP +PM + A LA FSQ+EQ MN+ + Sbjct: 44 QKFVDAKEHNKLGKDGFLKLLSHQMANQDPMKPMDQKQFAADLAQFSQLEQLTNMNTKMD 103 Query: 72 ELLKSN---NLAQASSYIGKNI 90 + K++ N A+S+IGK I Sbjct: 104 GMQKNDTTENKFMAASFIGKEI 125 >gi|302389665|ref|YP_003825486.1| flagellar hook capping protein [Thermosediminibacter oceani DSM 16646] gi|302200293|gb|ADL07863.1| flagellar hook capping protein [Thermosediminibacter oceani DSM 16646] Length = 129 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 37/105 (35%), Positives = 57/105 (54%), Gaps = 9/105 (8%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78 + LG+D FLKLLITQ+K+Q+P EP+ + E +AQLA FS +EQ +NS + + Sbjct: 22 GRAQLGKDDFLKLLITQLKYQNPLEPLDSKEYIAQLATFSSLEQLQNLNSQISAM----- 76 Query: 79 LAQASSYIGK--NITNADGSISGVVNAIQVSSTGLTAITVDNTEI 121 A S+IGK + +SG++ + L I D ++ Sbjct: 77 --SAVSFIGKTGKARIEEEYVSGIIKGVTFDKGNLNLIIGDEEKL 119 >gi|160901598|ref|YP_001567179.1| flagellar hook capping protein [Petrotoga mobilis SJ95] gi|160359242|gb|ABX30856.1| flagellar hook capping protein [Petrotoga mobilis SJ95] Length = 220 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 38/91 (41%), Positives = 58/91 (63%), Gaps = 6/91 (6%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN-- 77 KK L ++AFL+LL+T++++QDPT+PM+ + VAQL+ S EQ M+ +QE++ S Sbjct: 24 KKELDKEAFLELLVTELQNQDPTQPMENKDLVAQLSQLSSTEQITNMSQAIQEMVNSQMS 83 Query: 78 -NLAQASSYIGKNITNADGSI---SGVVNAI 104 N QA+S IGK + D +I SGV + Sbjct: 84 LNKLQAASLIGKTVVVNDNTIDLQSGVAEGL 114 >gi|183220586|ref|YP_001838582.1| basal-body rod modification protein FlgD [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910694|ref|YP_001962249.1| endoflagellar hook capping protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775370|gb|ABZ93671.1| Endoflagellar hook capping protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779008|gb|ABZ97306.1| Basal-body rod modification protein FlgD [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 194 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 36/109 (33%), Positives = 63/109 (57%), Gaps = 8/109 (7%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79 +K LG+D FLKLL+TQ+ HQDPT P++ + +AQ+A FS +EQ ++S + + Sbjct: 51 QKELGKDDFLKLLLTQLSHQDPTNPVQDKDFIAQMAQFSSLEQMKNISSGIARM----ES 106 Query: 80 AQASSYIGKNITNAD----GSISGVVNAIQVSSTGLTAITVDNTEIPIT 124 Q+ S +GK ++ D ++G+ AI + G T + V+ + ++ Sbjct: 107 KQSYSVVGKIVSGPDLVTGEDVTGLAGAILFDNEGKTYVRVNGRMLDVS 155 >gi|291484180|dbj|BAI85255.1| flagellar basal body rod modification protein [Bacillus subtilis subsp. natto BEST195] Length = 140 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 65/110 (59%), Gaps = 5/110 (4%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 S + +LG+D FLK+L+TQ+++QDP P+ E ++Q+A FS +EQ + +N+T+ + +++ Sbjct: 18 STNNSSLGKDEFLKILMTQVQNQDPLNPVDDKEFISQMATFSSLEQMMNLNTTMTQFVEN 77 Query: 77 NN-LAQASSYIGKNITNADG----SISGVVNAIQVSSTGLTAITVDNTEI 121 + ++GK ++ DG +G V++++ + D TEI Sbjct: 78 QDPFTTYVDWMGKEVSWTDGKSATDKTGTVSSVKHFKGNYYLVLDDGTEI 127 >gi|66046708|ref|YP_236549.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. syringae B728a] gi|63257415|gb|AAY38511.1| Flagellar hook capping protein [Pseudomonas syringae pv. syringae B728a] gi|330972412|gb|EGH72478.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 229 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 37/91 (40%), Positives = 59/91 (64%), Gaps = 6/91 (6%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 +NT NPT + + S TLG+D+FL+LL+TQ+K+Q+P +P ++ VAQLA FS +E Sbjct: 16 LNTLQNPTP---TATNSTGTLGKDSFLQLLVTQMKNQNPLDPQDNTQFVAQLAQFSSLES 72 Query: 63 SVQMNSTLQEL---LKSNNLAQASSYIGKNI 90 + ST+ + KS+ QASS +G+++ Sbjct: 73 MQNLTSTVDTIASSYKSSQALQASSLVGRSV 103 >gi|52080230|ref|YP_079021.1| flagellar basal body rod modification protein [Bacillus licheniformis ATCC 14580] gi|52785607|ref|YP_091436.1| flagellar basal body rod modification protein [Bacillus licheniformis ATCC 14580] gi|319645991|ref|ZP_08000221.1| YlxG protein [Bacillus sp. BT1B_CT2] gi|52003441|gb|AAU23383.1| Flagellar hook capping protein [Bacillus licheniformis ATCC 14580] gi|52348109|gb|AAU40743.1| YlxG [Bacillus licheniformis ATCC 14580] gi|317391741|gb|EFV72538.1| YlxG protein [Bacillus sp. BT1B_CT2] Length = 155 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 31/77 (40%), Positives = 49/77 (63%), Gaps = 1/77 (1%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75 K+ S LG+D FLKLL+ Q+++QDP PM+ E +AQ+A FS +EQ +N+T+ + Sbjct: 33 KAGSGSNLGKDEFLKLLMKQLQYQDPLNPMEDREFIAQMATFSSLEQLTNLNTTMSTFVG 92 Query: 76 -SNNLAQASSYIGKNIT 91 + + S+IGK +T Sbjct: 93 LQDPMTMYVSWIGKEVT 109 >gi|116328902|ref|YP_798622.1| endoflagellar hook capping protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330491|ref|YP_800209.1| endoflagellar hook capping protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116121646|gb|ABJ79689.1| Endoflagellar hook capping protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124180|gb|ABJ75451.1| Endoflagellar hook capping protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 271 Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 40/107 (37%), Positives = 62/107 (57%), Gaps = 8/107 (7%) Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA 80 K+LG+D FLKLLITQ+ QDPT P+K + +AQ+A FS +E QMN+ + K N Sbjct: 50 KSLGKDDFLKLLITQLSSQDPTNPVKDQDFIAQMAQFSSLE---QMNNISTGIQKMGN-R 105 Query: 81 QASSYIGKNITNAD----GSISGVVNAIQVSSTGLTAITVDNTEIPI 123 Q+ S +GK ++ D +++G+ A+ G T + V+ I + Sbjct: 106 QSFSLVGKLVSGPDFVTGENVAGIAGALFFDGEGKTFVRVNGRSIDV 152 >gi|261856361|ref|YP_003263644.1| flagellar hook capping protein [Halothiobacillus neapolitanus c2] gi|261836830|gb|ACX96597.1| flagellar hook capping protein [Halothiobacillus neapolitanus c2] Length = 245 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 75/135 (55%), Gaps = 28/135 (20%) Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST---LQELLKSN 77 ++L ++F+KLL TQ+++QDPT P S+ +AQLA FS ++ Q+N+T Q L+S+ Sbjct: 38 ESLDMNSFMKLLTTQLQNQDPTNPTDNSQMIAQLAQFSSLQGISQLNTTVNGFQSTLQSS 97 Query: 78 NLAQASSYIGK------------NITNADGSI--SGVVNAIQVSSTGLTAIT-------- 115 + QA++ +GK N T ADG+ SG++ A+ + TG T+++ Sbjct: 98 QIMQAAALVGKAAIVKGDTAHMYNSTAADGTTKASGILGAVDI-PTGATSVSVSITNASG 156 Query: 116 --VDNTEIPITTGIR 128 VD +P++ R Sbjct: 157 QVVDTQSVPVSGSAR 171 >gi|259417403|ref|ZP_05741322.1| flagellar basal body rod modification protein [Silicibacter sp. TrichCH4B] gi|259346309|gb|EEW58123.1| flagellar basal body rod modification protein [Silicibacter sp. TrichCH4B] Length = 231 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 30/68 (44%), Positives = 46/68 (67%), Gaps = 3/68 (4%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS---NNLAQA 82 + FL+L+ TQ K+QDP EPM +S+ AQLA FS +EQ V N TL +L + +N++Q Sbjct: 34 ETFLRLMTTQAKYQDPLEPMDSSDYTAQLAQFSSVEQQVLTNETLTSMLTALSLSNMSQL 93 Query: 83 SSYIGKNI 90 + ++GK + Sbjct: 94 TGWVGKEV 101 >gi|157364670|ref|YP_001471437.1| flagellar hook capping protein [Thermotoga lettingae TMO] gi|157315274|gb|ABV34373.1| flagellar hook capping protein [Thermotoga lettingae TMO] Length = 219 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 37/73 (50%), Positives = 49/73 (67%), Gaps = 3/73 (4%) Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--LKSNNL 79 TL +DAFL LLITQ+K+QDP EPM + +AQL FS +EQ M +++QE L+ L Sbjct: 22 TLDKDAFLLLLITQLKNQDPLEPMDNKDFIAQLTQFSTLEQITNMTNSIQEFLTLQEGAL 81 Query: 80 -AQASSYIGKNIT 91 AQ++S IGK T Sbjct: 82 QAQSASLIGKYAT 94 >gi|154252633|ref|YP_001413457.1| flagellar hook capping protein [Parvibaculum lavamentivorans DS-1] gi|154156583|gb|ABS63800.1| flagellar hook capping protein [Parvibaculum lavamentivorans DS-1] Length = 226 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 36/81 (44%), Positives = 49/81 (60%), Gaps = 10/81 (12%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN---NLAQA 82 D FLKLL TQ++HQDPT PM + + QL S +EQS+Q N L+ L+ +N N +Q+ Sbjct: 31 DTFLKLLTTQLQHQDPTNPMSSDQFTQQLVQMSGVEQSIQTNRYLETLITANAIQNASQS 90 Query: 83 SSYIGKNITN-------ADGS 96 S +GK +T ADGS Sbjct: 91 VSLLGKEVTGSGTGTLLADGS 111 >gi|148546705|ref|YP_001266807.1| flagellar basal body rod modification protein [Pseudomonas putida F1] gi|148510763|gb|ABQ77623.1| flagellar hook capping protein [Pseudomonas putida F1] Length = 234 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 50/72 (69%), Gaps = 3/72 (4%) Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNN 78 +LG+DAFL+LL+TQ++HQ+P +P SE VAQLA FS +E +N S++ + S+ Sbjct: 37 SLGKDAFLQLLVTQMQHQNPLDPQDNSEFVAQLAQFSSLEGITSLNDSVSSITSAMASSQ 96 Query: 79 LAQASSYIGKNI 90 QASS +G+++ Sbjct: 97 ALQASSLVGRSV 108 >gi|302185584|ref|ZP_07262257.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. syringae 642] Length = 229 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 39/99 (39%), Positives = 62/99 (62%), Gaps = 6/99 (6%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 +N+ NPT + + S TLG+D+FL+LL+TQ+K+Q+P +P ++ VAQLA FS +E Sbjct: 16 LNSLQNPTP---TATNSTGTLGKDSFLQLLVTQMKNQNPLDPQDNTQFVAQLAQFSSLES 72 Query: 63 SVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSIS 98 + ST+ + KS+ QASS +G+++ GS S Sbjct: 73 MQNLTSTVDTIATSYKSSQALQASSLVGRSVIIDSGSTS 111 >gi|217077694|ref|YP_002335412.1| basal-body rod modification protein FlgD [Thermosipho africanus TCF52B] gi|217037549|gb|ACJ76071.1| basal-body rod modification protein FlgD [Thermosipho africanus TCF52B] Length = 222 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 34/76 (44%), Positives = 53/76 (69%), Gaps = 3/76 (3%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75 K + KK L ++AFL+LL+TQ+K+QDP EP+K E +AQ+ S +EQ M+ ++Q+ ++ Sbjct: 19 KQEIKKELDKEAFLELLVTQLKNQDPLEPLKDREFIAQMTQLSTLEQITNMSESVQKFVE 78 Query: 76 SN---NLAQASSYIGK 88 S+ AQASS +GK Sbjct: 79 SSASLYRAQASSMVGK 94 >gi|78356755|ref|YP_388204.1| basal-body rod modification protein FlgD [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219160|gb|ABB38509.1| basal-body rod modification protein FlgD [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 263 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 37/92 (40%), Positives = 52/92 (56%), Gaps = 4/92 (4%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69 T ++K K LG++ FL LL+TQ+ HQDP PM E VAQLA FS +EQ ++ Sbjct: 16 TNDPYAKRKGAD-LGKEDFLTLLVTQLSHQDPLNPMDDKEFVAQLAQFSSLEQLTNISGG 74 Query: 70 LQELLKSNNLAQ---ASSYIGKNITNADGSIS 98 + L ++N Q A +IGK + A S+S Sbjct: 75 IDNLNDASNQGQMISAVGFIGKEVRAAGNSLS 106 >gi|89098637|ref|ZP_01171519.1| flagellar basal body rod modification protein D [Bacillus sp. NRRL B-14911] gi|89086599|gb|EAR65718.1| flagellar basal body rod modification protein D [Bacillus sp. NRRL B-14911] Length = 211 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 43/126 (34%), Positives = 71/126 (56%), Gaps = 20/126 (15%) Query: 16 KSKSKKT----LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 K +KT LG+D FLK+L+ Q+++QDP+ P++ + +AQ+A FS +EQ MN+++Q Sbjct: 15 KKDERKTGSDILGKDDFLKILMVQLQNQDPSNPLQDKDFIAQMATFSSLEQMTNMNTSIQ 74 Query: 72 ELL---KSNNLAQASSYIGKNIT----------NADGSI---SGVVNAIQVSSTGLTAIT 115 +L+ + ++L S + GK I NA SI +G V++IQ + I Sbjct: 75 KLVQMQEQDSLIAYSEFAGKEIKWHKVAESDDPNAQPSIEEGTGRVSSIQFKNGNAVFIL 134 Query: 116 VDNTEI 121 D TE+ Sbjct: 135 EDGTEL 140 >gi|330875982|gb|EGH10131.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330967089|gb|EGH67349.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 229 Score = 64.7 bits (156), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 36/86 (41%), Positives = 56/86 (65%), Gaps = 6/86 (6%) Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67 NPT + + S TLG+DAFL+LL+TQ+K+Q+P +P ++ VAQLA FS +E + Sbjct: 21 NPTP---TATNSTGTLGKDAFLQLLVTQMKNQNPLDPQDNTQFVAQLAQFSSLESMQNLT 77 Query: 68 STLQEL---LKSNNLAQASSYIGKNI 90 ST+ + KS+ QASS +G+++ Sbjct: 78 STVDTIATSYKSSQALQASSLVGRSV 103 >gi|283850851|ref|ZP_06368137.1| flagellar hook capping protein [Desulfovibrio sp. FW1012B] gi|283573774|gb|EFC21748.1| flagellar hook capping protein [Desulfovibrio sp. FW1012B] Length = 235 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 33/71 (46%), Positives = 46/71 (64%), Gaps = 3/71 (4%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNL 79 LGQDAFL+LL+TQ+++QDP PM E VA+LA FS +EQ ++N+ + L L Sbjct: 28 LGQDAFLQLLVTQLQYQDPLNPMDDKEFVAELAQFSSLEQLTEINTGIDNLAIQGTQQQL 87 Query: 80 AQASSYIGKNI 90 A ++IGK I Sbjct: 88 LGAVNFIGKTI 98 >gi|219670135|ref|YP_002460570.1| flagellar hook capping protein [Desulfitobacterium hafniense DCB-2] gi|219540395|gb|ACL22134.1| flagellar hook capping protein [Desulfitobacterium hafniense DCB-2] Length = 184 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 33/93 (35%), Positives = 57/93 (61%), Gaps = 7/93 (7%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE------ 72 +K+ LG+D FLKLL+ ++ +QDP PM + + Q+A FS +EQ M+ +++ Sbjct: 28 TKEVLGKDDFLKLLVAELTNQDPLSPMDNKDMITQMAQFSSLEQMNNMSKSMENLVGAFG 87 Query: 73 -LLKSNNLAQASSYIGKNITNADGSISGVVNAI 104 L +++ L+Q ++ IGK++ A+ SG VN I Sbjct: 88 ALFQNSLLSQGAALIGKHVEGANIDGSGFVNGI 120 >gi|20807882|ref|NP_623053.1| flagellar hook capping protein [Thermoanaerobacter tengcongensis MB4] gi|20516447|gb|AAM24657.1| Flagellar hook capping protein [Thermoanaerobacter tengcongensis MB4] Length = 131 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 50/133 (37%), Positives = 73/133 (54%), Gaps = 20/133 (15%) Query: 1 MEINTEVN---PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVF 57 M +NT + P+ Q +KSK LG+D FL LL+TQ+K+QDP P+ E +AQLA F Sbjct: 1 MNVNTNYSVLPPSNQNKVTTKSK--LGKDDFLMLLVTQLKNQDPLNPVDDKEFLAQLAQF 58 Query: 58 SQMEQSVQMNSTLQELLKSNNLAQASSYIGKNI--TNADGS-----ISGVVNAIQVSSTG 110 S +EQ +Q L +S N +A + IGKN+ T DG+ + G V+A+ G Sbjct: 59 SALEQ-------MQNLNESFNSVKAIALIGKNVYATINDGNGNYKEVFGKVDAV-YRENG 110 Query: 111 LTAITVDNTEIPI 123 + V +IP+ Sbjct: 111 QYFLKVKGLDIPL 123 >gi|296123338|ref|YP_003631116.1| flagellar hook capping protein [Planctomyces limnophilus DSM 3776] gi|296015678|gb|ADG68917.1| flagellar hook capping protein [Planctomyces limnophilus DSM 3776] Length = 139 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 36/112 (32%), Positives = 68/112 (60%), Gaps = 4/112 (3%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82 L +AF+KLLITQ+++QDP+ PM E ++Q++ + +++ L+ L S L + Sbjct: 27 LDTEAFMKLLITQLQNQDPSNPMSNEELLSQISQMRNLTSDIELTDALEGLTLSQQLNSS 86 Query: 83 SSYIGKNI--TNADGS-ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 ++++GK I T A+G+ +SGVV+ + V + + V + E+P+T ++N Sbjct: 87 TAFLGKEIKGTTANGTEVSGVVDRVYVKDKA-SFLVVGDKEVPLTNVTDVTN 137 >gi|218778869|ref|YP_002430187.1| flagellar hook capping protein [Desulfatibacillum alkenivorans AK-01] gi|218760253|gb|ACL02719.1| Flagellar basal body rod modification protein [Desulfatibacillum alkenivorans AK-01] Length = 230 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 38/94 (40%), Positives = 56/94 (59%), Gaps = 8/94 (8%) Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67 NPT + + LGQ+ FL+LLI Q+K+QDP PM+ ++ AQLA FS +EQ + Sbjct: 17 NPTTE-----STGTGLGQEDFLQLLIAQLKNQDPLNPMEGTDFTAQLAQFSSLEQLFGIG 71 Query: 68 STLQELL--KSNNLAQASSY-IGKNITNADGSIS 98 +L+E+L +SNN Y +GK I D S++ Sbjct: 72 DSLEEMLSIQSNNGTGDVGYLLGKVIVAEDDSLT 105 >gi|251797438|ref|YP_003012169.1| flagellar hook capping protein [Paenibacillus sp. JDR-2] gi|247545064|gb|ACT02083.1| flagellar hook capping protein [Paenibacillus sp. JDR-2] Length = 182 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 43/123 (34%), Positives = 67/123 (54%), Gaps = 9/123 (7%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75 K K LG+DAFL+LL+TQ+K+QDP +P + + Q+A F+ +EQ + M+ L L Sbjct: 23 KDTDKNALGKDAFLELLVTQLKNQDPLQPQDNAAFITQMAQFTSVEQLMNMSDQLS--LL 80 Query: 76 SNNLAQASSYIGKNITNADGSISG-------VVNAIQVSSTGLTAITVDNTEIPITTGIR 128 + NL ASS IGK ++ + +G VN+I L A D T I ++ + Sbjct: 81 NQNLGTASSIIGKTVSWYELDDAGQTKLMYDAVNSIVSQDGTLYAKFADETMIKLSDVVT 140 Query: 129 ISN 131 +S+ Sbjct: 141 VSD 143 >gi|237799205|ref|ZP_04587666.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|237806224|ref|ZP_04592928.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022060|gb|EGI02117.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331027337|gb|EGI07392.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 229 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 39/99 (39%), Positives = 61/99 (61%), Gaps = 6/99 (6%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 +NT NPT + + S TLG+D+FL+LL+TQ+K+Q+P +P ++ VAQLA FS +E Sbjct: 16 LNTLQNPTP---TATNSTGTLGKDSFLQLLVTQMKNQNPLDPQDNTQFVAQLAQFSSLES 72 Query: 63 SVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSIS 98 + T+ + KS+ QASS +G+++ GS S Sbjct: 73 MQNLTKTVDTIAGSYKSSQALQASSLVGRSVIIDSGSTS 111 >gi|296133042|ref|YP_003640289.1| flagellar hook capping protein [Thermincola sp. JR] gi|296031620|gb|ADG82388.1| flagellar hook capping protein [Thermincola potens JR] Length = 146 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 12/121 (9%) Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST-- 69 QE K LG+D FLKLL+TQ+K+QDP EP + +AQ+A FS +EQ M+ Sbjct: 16 QEAVSRTVKNVLGKDDFLKLLLTQLKYQDPLEPTDNKDFIAQMAQFSALEQMTNMSDGFT 75 Query: 70 ----LQE-LLKSNNLAQASSYIGKNI----TNADGSISGVVNAIQVSSTGLTAITVDNTE 120 +QE L + + ++QA IGK + + + ++G V A+++ G + V+ E Sbjct: 76 KLVQMQETLFRESTVSQAVGLIGKKVEATLPDQNEPLTGFVTAMKIVD-GEPRVVVNGKE 134 Query: 121 I 121 I Sbjct: 135 I 135 >gi|99082818|ref|YP_614972.1| flagellar basal body rod modification protein [Ruegeria sp. TM1040] gi|99039098|gb|ABF65710.1| flagellar basal-body rod modification protein FlgD [Ruegeria sp. TM1040] Length = 231 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 32/76 (42%), Positives = 48/76 (63%), Gaps = 4/76 (5%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS---NNLAQASS 84 FL+L+ TQ K+QDP EPM +S+ AQLA FS +EQ V N TL +L + +N++Q + Sbjct: 36 FLRLMTTQAKYQDPLEPMDSSDYTAQLAQFSSVEQQVLTNETLTSMLTALSLSNMSQLTG 95 Query: 85 YIGKNI-TNADGSISG 99 ++G+ + A G G Sbjct: 96 WVGREVRAQAAGYFDG 111 >gi|78224297|ref|YP_386044.1| flagellar hook capping protein [Geobacter metallireducens GS-15] gi|78195552|gb|ABB33319.1| Flagellar hook capping protein [Geobacter metallireducens GS-15] Length = 218 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 36/81 (44%), Positives = 52/81 (64%), Gaps = 6/81 (7%) Query: 20 KKTLG--QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77 KK+ G +D FLKL +TQ++HQDP P +SE + QLA +Q+EQ+ NS L +++ Sbjct: 17 KKSTGMNKDDFLKLFVTQLQHQDPLNPADSSEFIGQLAQLTQVEQAYNTNSNLTKIIDLF 76 Query: 78 NLA---QASSYIGKNIT-NAD 94 N A + SYIGK++T N D Sbjct: 77 NGATSLSSVSYIGKSVTANGD 97 >gi|167034945|ref|YP_001670176.1| flagellar basal body rod modification protein [Pseudomonas putida GB-1] gi|166861433|gb|ABY99840.1| flagellar hook capping protein [Pseudomonas putida GB-1] Length = 233 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 32/71 (45%), Positives = 50/71 (70%), Gaps = 3/71 (4%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNL 79 LG+DAFL+LL+TQ+K+Q+P +P + E VAQLA FS +E +N ++ + L+S+ Sbjct: 36 LGKDAFLQLLVTQMKNQNPLDPQENGEFVAQLAQFSSLESMQSLNDSVTYIAAGLQSSQA 95 Query: 80 AQASSYIGKNI 90 QASS +G+N+ Sbjct: 96 LQASSLVGRNV 106 >gi|325289232|ref|YP_004265413.1| flagellar hook capping protein [Syntrophobotulus glycolicus DSM 8271] gi|324964633|gb|ADY55412.1| flagellar hook capping protein [Syntrophobotulus glycolicus DSM 8271] Length = 263 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 69/125 (55%), Gaps = 7/125 (5%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 +N+ T S + +L ++ FL LL+TQ+K+QDP P ++E V+QLA FS +EQ Sbjct: 6 VNSTSYTTAGTASSRDTSTSLDKEDFLNLLVTQLKYQDPLNPSDSTEYVSQLAQFSLLEQ 65 Query: 63 SVQMNSTLQELLKSNNLAQASSYIGKNITNADG---SISGVVNAIQVSSTGLTAITVDNT 119 MN++L+ L L YI ++T + G ++ G V+++ +S+ G A+ V Sbjct: 66 MTNMNTSLEAL---EALTMTGKYITASVTGSSGETTTVEGTVDSVTMSN-GEAALVVGGK 121 Query: 120 EIPIT 124 I ++ Sbjct: 122 SIELS 126 >gi|296126536|ref|YP_003633788.1| flagellar hook capping protein [Brachyspira murdochii DSM 12563] gi|296018352|gb|ADG71589.1| flagellar hook capping protein [Brachyspira murdochii DSM 12563] Length = 263 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 36/104 (34%), Positives = 55/104 (52%), Gaps = 3/104 (2%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 Q F + ++ +LG+DAFLKLL Q+ HQDP PM + +AQLA FS +EQ ++N L Sbjct: 27 QNNFQRDPTQNSLGKDAFLKLLTVQMSHQDPLSPMDNRDMIAQLAQFSSVEQMTEVNKNL 86 Query: 71 QELLKSNNLAQASSYIGKNI---TNADGSISGVVNAIQVSSTGL 111 + + S +GK++ A G V + + TG+ Sbjct: 87 DSMKTFYSSQTGYSMLGKSVEVMDEAGNRFLGPVEMVMENDTGV 130 >gi|149178722|ref|ZP_01857305.1| probable basal-body rod modification protein FlgD [Planctomyces maris DSM 8797] gi|148842420|gb|EDL56800.1| probable basal-body rod modification protein FlgD [Planctomyces maris DSM 8797] Length = 145 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 31/102 (30%), Positives = 66/102 (64%), Gaps = 4/102 (3%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSY 85 ++F+KLLIT++++QDPTEP+ + +AQ++ +++ +++++ TL+E+ +L QA++ Sbjct: 34 ESFMKLLITELQNQDPTEPLGNEQLLAQISSMRELQSNIELSDTLKEITTGQSLTQAAAL 93 Query: 86 IGKNITNADG---SISGVVNAIQVSSTGLTAITVDNTEIPIT 124 IGK + +G ++GVV V G + + + E+P++ Sbjct: 94 IGKEVEGQEGQQNPVAGVVERAFVRD-GKSYVGIGAFELPVS 134 >gi|42528269|ref|NP_973367.1| flagellar basal body rod modification protein [Treponema denticola ATCC 35405] gi|4580017|gb|AAD24205.1|AF049342_3 flagellar hook assembly protein FlgD [Treponema denticola ATCC 33520] gi|4426942|gb|AAD20616.1| flagellar hook assembly scaffolding protein FlgD [Treponema denticola] gi|41819539|gb|AAS13286.1| flagellar hook assembly scaffolding protein [Treponema denticola ATCC 35405] gi|325474541|gb|EGC77727.1| flagellar hook assembly protein FlgD [Treponema denticola F0402] Length = 169 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 38/99 (38%), Positives = 62/99 (62%), Gaps = 9/99 (9%) Query: 11 QQEFSKSK-SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN-- 67 +Q F++++ K+ LG+D FL+LLI Q+ HQDPT PM+ ++ + Q+A FS +EQ MN Sbjct: 45 KQNFAETRVPKQQLGKDDFLQLLIAQLTHQDPTSPMEDTQFIGQMAQFSSLEQMTNMNKN 104 Query: 68 -STLQELLKSNNLAQASSYIGKNITNADGS--ISGVVNA 103 + L EL+ ++ A +GK + GS +SG ++A Sbjct: 105 FAALNELMTGSSAVNA---VGKKVDLDLGSSQVSGYISA 140 >gi|56419761|ref|YP_147079.1| flagellar basal body rod modification protein [Geobacillus kaustophilus HTA426] gi|297530599|ref|YP_003671874.1| flagellar hook capping protein [Geobacillus sp. C56-T3] gi|56379603|dbj|BAD75511.1| flagellar hook capping protein [Geobacillus kaustophilus HTA426] gi|297253851|gb|ADI27297.1| flagellar hook capping protein [Geobacillus sp. C56-T3] Length = 142 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 34/101 (33%), Positives = 64/101 (63%), Gaps = 6/101 (5%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN---L 79 LG+D FLK+L+ Q+++QDP PM+ + +AQ+A FS +EQ + + + +Q+ +++++ L Sbjct: 27 LGKDDFLKILLAQLENQDPLNPMEDKDFIAQMASFSSLEQMMNIANLMQQWMQASSRDAL 86 Query: 80 AQASSYIGKNITNADGS--ISGVVNAIQVSSTGLTAITVDN 118 + S +IGK + DG +S VV ++ + G + +DN Sbjct: 87 LRYSEWIGKTVHWQDGETMMSAVVQSV-MQKDGQVTLGLDN 126 >gi|315281357|ref|ZP_07869997.1| flagellar hook capping protein [Listeria marthii FSL S4-120] gi|313614996|gb|EFR88500.1| flagellar hook capping protein [Listeria marthii FSL S4-120] Length = 140 Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 39/111 (35%), Positives = 68/111 (61%), Gaps = 7/111 (6%) Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77 KTLG+D F+KL +T +++QDP+ P+ +E ++Q+A S MEQ M + + +L +++ Sbjct: 24 KTLGKDDFMKLFLTSLQYQDPSSPLDTNEMMSQMAQLSLMEQVANMTTAVDKLSEQAQNS 83 Query: 78 NLAQASSYIGKNITNA--DGS-ISGVVNAIQVSSTGLTAITVDNTE-IPIT 124 L A ++IGK+I +G ISG V ++Q ++ G+ DN +P+T Sbjct: 84 ALQSAVNFIGKDIKGVSLNGEVISGKVESVQQTTNGVMLKLKDNDSLVPMT 134 >gi|16802738|ref|NP_464223.1| flagellar basal body rod modification protein [Listeria monocytogenes EGD-e] gi|47095262|ref|ZP_00232873.1| flagellar hook assembly protein FlgD [Listeria monocytogenes str. 1/2a F6854] gi|116872085|ref|YP_848866.1| flagellar basal body rod modification protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|224498778|ref|ZP_03667127.1| flagellar basal body rod modification protein [Listeria monocytogenes Finland 1988] gi|224501999|ref|ZP_03670306.1| flagellar basal body rod modification protein [Listeria monocytogenes FSL R2-561] gi|254829353|ref|ZP_05234040.1| flgD [Listeria monocytogenes FSL N3-165] gi|254830313|ref|ZP_05234968.1| flagellar basal body rod modification protein [Listeria monocytogenes 10403S] gi|254900068|ref|ZP_05259992.1| flagellar basal body rod modification protein [Listeria monocytogenes J0161] gi|254911379|ref|ZP_05261391.1| flagellar hook assembly protein FlgD [Listeria monocytogenes J2818] gi|254935706|ref|ZP_05267403.1| flgD [Listeria monocytogenes F6900] gi|255028842|ref|ZP_05300793.1| flagellar basal body rod modification protein [Listeria monocytogenes LO28] gi|284801026|ref|YP_003412891.1| flagellar basal body rod modification protein [Listeria monocytogenes 08-5578] gi|284994168|ref|YP_003415936.1| flagellar basal body rod modification protein [Listeria monocytogenes 08-5923] gi|16410085|emb|CAC98774.1| lmo0696 [Listeria monocytogenes EGD-e] gi|47016333|gb|EAL07255.1| flagellar hook assembly protein FlgD [Listeria monocytogenes str. 1/2a F6854] gi|116740963|emb|CAK20083.1| flagellar hook assembly protein FlgD [Listeria welshimeri serovar 6b str. SLCC5334] gi|258601766|gb|EEW15091.1| flgD [Listeria monocytogenes FSL N3-165] gi|258608289|gb|EEW20897.1| flgD [Listeria monocytogenes F6900] gi|284056588|gb|ADB67529.1| flagellar basal body rod modification protein [Listeria monocytogenes 08-5578] gi|284059635|gb|ADB70574.1| flagellar basal body rod modification protein [Listeria monocytogenes 08-5923] gi|293589316|gb|EFF97650.1| flagellar hook assembly protein FlgD [Listeria monocytogenes J2818] Length = 140 Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 39/111 (35%), Positives = 68/111 (61%), Gaps = 7/111 (6%) Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77 KTLG+D F+KL +T +++QDP+ P+ +E ++Q+A S MEQ M + + +L +++ Sbjct: 24 KTLGKDDFMKLFLTSLQYQDPSSPLDTNEMMSQMAQLSLMEQVANMTTAVDKLSEQAQNS 83 Query: 78 NLAQASSYIGKNITNA--DGS-ISGVVNAIQVSSTGLTAITVDNTE-IPIT 124 L A ++IGK+I +G ISG V ++Q ++ G+ DN +P+T Sbjct: 84 ALQSAVNFIGKDIKGVSLNGEVISGKVESVQQTTNGVMLKLKDNDSLVPMT 134 >gi|260893869|ref|YP_003239966.1| flagellar hook capping protein [Ammonifex degensii KC4] gi|260866010|gb|ACX53116.1| flagellar hook capping protein [Ammonifex degensii KC4] Length = 136 Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 70/130 (53%), Gaps = 8/130 (6%) Query: 1 MEINTEVNPTQQEFSKSKSKKT-----LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55 M+++T + PT + S ++ +D FLK+L+ Q+ H DP P K +++++ Sbjct: 1 MDVSTLMAPTAGTSAASTTEAASSLFRWSKDTFLKILVAQLSHPDPFSPPKPETIISEMS 60 Query: 56 VFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNIT-NADGS-ISGVVNAIQVSSTGLTA 113 + +EQ +++ S+L + L Q +S +GK +T ADGS ++G V +++ G Sbjct: 61 NLALLEQMMRLTSSLDSFSRWLELGQGASLVGKRVTVEADGSAVTGTVEKVRLED-GKIR 119 Query: 114 ITVDNTEIPI 123 + +D E P+ Sbjct: 120 LVIDGREYPL 129 >gi|46906947|ref|YP_013336.1| flagellar basal body rod modification protein [Listeria monocytogenes serotype 4b str. F2365] gi|47091658|ref|ZP_00229454.1| flagellar hook assembly protein FlgD [Listeria monocytogenes str. 4b H7858] gi|217965206|ref|YP_002350884.1| flagellar hook capping protein [Listeria monocytogenes HCC23] gi|226223327|ref|YP_002757434.1| flagellar hook assembly protein [Listeria monocytogenes Clip81459] gi|254824024|ref|ZP_05229025.1| flagellar hook assembly protein FlgD [Listeria monocytogenes FSL J1-194] gi|254853100|ref|ZP_05242448.1| flagellar hook assembly protein FlgD [Listeria monocytogenes FSL R2-503] gi|254932024|ref|ZP_05265383.1| flagellar hook assembly protein FlgD [Listeria monocytogenes HPB2262] gi|254994098|ref|ZP_05276288.1| flagellar basal body rod modification protein [Listeria monocytogenes FSL J2-064] gi|255521909|ref|ZP_05389146.1| flagellar basal body rod modification protein [Listeria monocytogenes FSL J1-175] gi|290893993|ref|ZP_06556968.1| flagellar hook assembly protein FlgD [Listeria monocytogenes FSL J2-071] gi|300764508|ref|ZP_07074501.1| flagellar hook assembly protein FlgD [Listeria monocytogenes FSL N1-017] gi|46880213|gb|AAT03513.1| flagellar hook assembly protein FlgD [Listeria monocytogenes serotype 4b str. F2365] gi|47019977|gb|EAL10714.1| flagellar hook assembly protein FlgD [Listeria monocytogenes str. 4b H7858] gi|217334476|gb|ACK40270.1| flagellar hook capping protein [Listeria monocytogenes HCC23] gi|225875789|emb|CAS04492.1| Putative flagellar hook assembly protein [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258606449|gb|EEW19057.1| flagellar hook assembly protein FlgD [Listeria monocytogenes FSL R2-503] gi|290556439|gb|EFD89978.1| flagellar hook assembly protein FlgD [Listeria monocytogenes FSL J2-071] gi|293583576|gb|EFF95608.1| flagellar hook assembly protein FlgD [Listeria monocytogenes HPB2262] gi|293593252|gb|EFG01013.1| flagellar hook assembly protein FlgD [Listeria monocytogenes FSL J1-194] gi|300514862|gb|EFK41916.1| flagellar hook assembly protein FlgD [Listeria monocytogenes FSL N1-017] gi|307570235|emb|CAR83414.1| flagellar hook assembly protein [Listeria monocytogenes L99] gi|313610130|gb|EFR85449.1| flagellar hook capping protein [Listeria monocytogenes FSL F2-208] gi|328467263|gb|EGF38343.1| flagellar basal body rod modification protein [Listeria monocytogenes 1816] gi|328475659|gb|EGF46408.1| flagellar basal body rod modification protein [Listeria monocytogenes 220] gi|332311121|gb|EGJ24216.1| Flagellar hook assembly protein FlgD [Listeria monocytogenes str. Scott A] Length = 140 Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 39/111 (35%), Positives = 68/111 (61%), Gaps = 7/111 (6%) Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77 KTLG+D F+KL +T +++QDP+ P+ +E ++Q+A S MEQ M + + +L +++ Sbjct: 24 KTLGKDDFMKLFLTSLQYQDPSSPLDTNEMMSQMAQLSLMEQVANMTTAVDKLSEQAQNS 83 Query: 78 NLAQASSYIGKNITNA--DGS-ISGVVNAIQVSSTGLTAITVDNTE-IPIT 124 L A ++IGK+I +G ISG V ++Q ++ G+ DN +P+T Sbjct: 84 ALQSAVNFIGKDIKGVSLNGEVISGKVESVQQTTNGVMLKLKDNDSLVPMT 134 >gi|115523198|ref|YP_780109.1| flagellar basal body rod modification protein [Rhodopseudomonas palustris BisA53] gi|115517145|gb|ABJ05129.1| flagellar hook capping protein [Rhodopseudomonas palustris BisA53] Length = 135 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 37/112 (33%), Positives = 64/112 (57%), Gaps = 3/112 (2%) Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ 81 T+G + FL+LLI Q+K+QDP+ P ++ ++Q A S +EQ++Q N+ L LL ++ L+Q Sbjct: 24 TVGYNEFLQLLIAQMKNQDPSNPTDMAQYMSQFAQLSSVEQAIQTNAKLDTLLSTSALSQ 83 Query: 82 ASSYIGKNITNAD---GSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 A IG+ + D S +G + ++ + G A ++ + GI IS Sbjct: 84 AEGLIGRTASFTDEAGHSATGKIASVSIIQGGAVATLDTGVQVLLGPGITIS 135 >gi|330961195|gb|EGH61455.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 214 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 36/91 (39%), Positives = 59/91 (64%), Gaps = 6/91 (6%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 +NT NPT + + S TLG+D+FL+LL+TQ+K+Q+P +P ++ VAQLA FS +E Sbjct: 1 MNTLQNPTP---TATNSTGTLGKDSFLQLLVTQMKNQNPLDPQDNTQFVAQLAQFSSLES 57 Query: 63 SVQMNSTLQEL---LKSNNLAQASSYIGKNI 90 + +T+ + KS+ QASS +G+++ Sbjct: 58 MQNLTTTVDTIASSYKSSQALQASSLVGRSV 88 >gi|121533755|ref|ZP_01665582.1| flagellar hook capping protein [Thermosinus carboxydivorans Nor1] gi|121307746|gb|EAX48661.1| flagellar hook capping protein [Thermosinus carboxydivorans Nor1] Length = 136 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 39/105 (37%), Positives = 60/105 (57%), Gaps = 10/105 (9%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77 K LG+D FLKLL+ Q+++QDP +PM+ E +AQ+A FS +EQ +NST+ + Sbjct: 22 KKNDQLGKDDFLKLLVAQLRYQDPMKPMEDKEFIAQMAQFSSLEQIQNLNSTMVTM---- 77 Query: 78 NLAQASSYIGKNIT--NADGS-ISGVVNAIQVSSTGLTAITVDNT 119 QA IGK + N +G+ +G V A+++S + D T Sbjct: 78 ---QAMGLIGKTVRWQNENGAEQAGNVRAVKISDRQPYIVVGDTT 119 >gi|225181605|ref|ZP_03735046.1| flagellar hook capping protein [Dethiobacter alkaliphilus AHT 1] gi|225167713|gb|EEG76523.1| flagellar hook capping protein [Dethiobacter alkaliphilus AHT 1] Length = 141 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 35/101 (34%), Positives = 67/101 (66%), Gaps = 5/101 (4%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69 TQQ + + + + +D FL+LL+TQ+++QDP +P SE VAQ+A F+ +EQ +N+T Sbjct: 13 TQQSNKATGAMQEMDKDMFLQLLVTQLRYQDPLDPQDNSEFVAQMAQFTSLEQMQNLNNT 72 Query: 70 LQELL--KSNNLAQASSYIGKNITNADGS---ISGVVNAIQ 105 + +LL +S+ A +++G ++T D + ++G+V+A++ Sbjct: 73 MAKLLDIQSSLHNSAPAFLGLSVTVKDDNGLPLTGIVSAVE 113 >gi|149182510|ref|ZP_01860983.1| flagellar basal body rod modification protein D [Bacillus sp. SG-1] gi|148849770|gb|EDL63947.1| flagellar basal body rod modification protein D [Bacillus sp. SG-1] Length = 211 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 54/83 (65%), Gaps = 3/83 (3%) Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 Q+ + K LG+D F+K+L+TQ+++QDP PM+ + +AQ+A FS +EQ ++ +++ Sbjct: 15 QQKQREGGKDVLGKDDFMKILMTQLQNQDPLNPMQDKDFIAQMATFSTLEQITNLSKSME 74 Query: 72 ELLKS---NNLAQASSYIGKNIT 91 +++ NNL + ++GK IT Sbjct: 75 TFIEAQGQNNLIAYNQFVGKEIT 97 >gi|295696120|ref|YP_003589358.1| flagellar hook capping protein [Bacillus tusciae DSM 2912] gi|295411722|gb|ADG06214.1| flagellar hook capping protein [Bacillus tusciae DSM 2912] Length = 151 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 36/112 (32%), Positives = 68/112 (60%), Gaps = 4/112 (3%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82 L +++FL+LL+ Q+K+QDP +PM +++ ++QLA FS +EQ + ++ + + A Sbjct: 30 LDKNSFLQLLVAQLKNQDPLQPMDSTQFISQLAQFSALEQMTNVAEGQEKAATATEMQAA 89 Query: 83 SSYIGKNITNAD--GSI-SGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 + +IGK I+ D G+I SGV A+QV GL + + +P ++ + + + Sbjct: 90 AEWIGKRISYLDDKGNIQSGVAQAMQVKE-GLVYLDLGGLSVPWSSILEVGD 140 >gi|261419426|ref|YP_003253108.1| flagellar basal body rod modification protein [Geobacillus sp. Y412MC61] gi|319766241|ref|YP_004131742.1| flagellar hook capping protein [Geobacillus sp. Y412MC52] gi|261375883|gb|ACX78626.1| flagellar hook capping protein [Geobacillus sp. Y412MC61] gi|317111107|gb|ADU93599.1| flagellar hook capping protein [Geobacillus sp. Y412MC52] Length = 142 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 34/108 (31%), Positives = 66/108 (61%), Gaps = 6/108 (5%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75 + + LG+D FLK+L+ Q+++QDP PM+ + +AQ+A FS +EQ + + + +Q+ ++ Sbjct: 20 RKTGNQILGKDDFLKILLAQLENQDPLNPMEDKDFIAQMANFSSLEQMMNIANLMQQWMQ 79 Query: 76 SNN---LAQASSYIGKNITNADGS--ISGVVNAIQVSSTGLTAITVDN 118 +++ L + S +IGK + DG +S VV ++ + G + +DN Sbjct: 80 ASSRDALLRYSEWIGKTVHWQDGETMMSAVVQSV-MQKDGQVTLGLDN 126 >gi|170722893|ref|YP_001750581.1| flagellar basal body rod modification protein [Pseudomonas putida W619] gi|169760896|gb|ACA74212.1| flagellar hook capping protein [Pseudomonas putida W619] Length = 235 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 49/71 (69%), Gaps = 3/71 (4%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNL 79 LG+DAFL+LL+TQ++HQ+P +P + E VAQLA FS +E +N S++ + S+ Sbjct: 39 LGKDAFLQLLVTQMQHQNPLDPQENGEFVAQLAQFSSLEGITSLNESVSSITNAMASSQA 98 Query: 80 AQASSYIGKNI 90 QASS +G+++ Sbjct: 99 LQASSLVGRSV 109 >gi|260432283|ref|ZP_05786254.1| flagellar basal body rod modification protein [Silicibacter lacuscaerulensis ITI-1157] gi|260416111|gb|EEX09370.1| flagellar basal body rod modification protein [Silicibacter lacuscaerulensis ITI-1157] Length = 221 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 35/78 (44%), Positives = 49/78 (62%), Gaps = 7/78 (8%) Query: 20 KKTLGQ----DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL-- 73 KKT G + FLK+L Q ++QDP EP+ +SE AQLA FS +EQ VQ N L L Sbjct: 21 KKTSGLASDFETFLKMLTAQARNQDPLEPLDSSEYAAQLAQFSMVEQQVQTNELLDGLAG 80 Query: 74 -LKSNNLAQASSYIGKNI 90 L + NL + +++IGK++ Sbjct: 81 TLSAANLTEMAAWIGKDV 98 >gi|297569154|ref|YP_003690498.1| flagellar hook capping protein [Desulfurivibrio alkaliphilus AHT2] gi|296925069|gb|ADH85879.1| flagellar hook capping protein [Desulfurivibrio alkaliphilus AHT2] Length = 251 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 39/91 (42%), Positives = 57/91 (62%), Gaps = 5/91 (5%) Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK---SNN 78 +L + F+ L ITQ++HQDP +PM++ E +QLA FS ME ++QM+ +++LL S N Sbjct: 28 SLDRQDFMTLFITQLQHQDPMKPMESYEMASQLAQFSSMEATMQMSDNMEKLLSYQMSQN 87 Query: 79 LAQASSYIGKNITNADGSISGVVNAIQVSST 109 Q S IGK I DG+ GV + QV+ T Sbjct: 88 NLQLLSLIGKTI-ETDGNEIGVTDG-QVART 116 >gi|299534780|ref|ZP_07048110.1| hypothetical protein BFZC1_02077 [Lysinibacillus fusiformis ZC1] gi|298729868|gb|EFI70413.1| hypothetical protein BFZC1_02077 [Lysinibacillus fusiformis ZC1] Length = 230 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 3/71 (4%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ---ELLKSNNL 79 LG+DAFLKLLITQ++HQDPT PM E ++Q+A FS +EQ M ++ + + + Sbjct: 34 LGKDAFLKLLITQLQHQDPTNPMDDREFISQMAQFSSLEQMQNMTKAMESLLSSQQQSQM 93 Query: 80 AQASSYIGKNI 90 +++IGK + Sbjct: 94 MNYATFIGKEV 104 >gi|295110894|emb|CBL27644.1| Flagellar hook capping protein [Synergistetes bacterium SGP1] Length = 145 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 1/69 (1%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82 L ++AFLKLLI ++ +QDP PM+ E +AQ+A FS +EQ MN TL+ + +++ A Sbjct: 26 LDKNAFLKLLIAELSNQDPLNPMEDREFIAQMAQFSSLEQMQNMNKTLESMAQASKF-DA 84 Query: 83 SSYIGKNIT 91 SYIGK I+ Sbjct: 85 VSYIGKAIS 93 >gi|229544400|ref|ZP_04433458.1| flagellar hook capping protein [Bacillus coagulans 36D1] gi|229324885|gb|EEN90562.1| flagellar hook capping protein [Bacillus coagulans 36D1] Length = 215 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 38/112 (33%), Positives = 62/112 (55%), Gaps = 14/112 (12%) Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA 80 KTL +DAFLK+LI Q+++QDPT+PM ++ V+Q+A FS +EQ + + + L+K + + Sbjct: 27 KTLDKDAFLKILIAQLQNQDPTKPMDDTQFVSQMAQFSSLEQMTNLKNDIDNLIKLSQQS 86 Query: 81 Q---ASSYIGKNI------TNADGSIS-----GVVNAIQVSSTGLTAITVDN 118 Q + YIG+ + T DG+ S G + I T+D+ Sbjct: 87 QQIAYTQYIGRTVSWEKTETADDGTASVKSGTGTITGISFGDDNAVTFTLDD 138 >gi|56698286|ref|YP_168659.1| flagellar basal body rod modification protein [Ruegeria pomeroyi DSS-3] gi|56680023|gb|AAV96689.1| basal-body rod modification protein FlgD [Ruegeria pomeroyi DSS-3] Length = 222 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 33/79 (41%), Positives = 50/79 (63%), Gaps = 8/79 (10%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQA 82 D F+++L TQ K+Q+P EP+ +SE AQLA FS +EQ + N TL L L + ++A+ Sbjct: 32 DTFIRMLTTQAKYQNPLEPLDSSEYAAQLAQFSMVEQQTKTNDTLTALVEKLGATDMAKL 91 Query: 83 SSYIGKNI-----TNADGS 96 S++IGK + N DG+ Sbjct: 92 SNWIGKEVRAVAPANFDGT 110 >gi|308173590|ref|YP_003920295.1| flagellar hook assembly protein [Bacillus amyloliquefaciens DSM 7] gi|307606454|emb|CBI42825.1| flagellar hook assembly protein [Bacillus amyloliquefaciens DSM 7] gi|328553478|gb|AEB23970.1| flagellar basal body rod modification protein [Bacillus amyloliquefaciens TA208] gi|328911731|gb|AEB63327.1| flagellar hook assembly protein [Bacillus amyloliquefaciens LL3] Length = 143 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 53/77 (68%), Gaps = 1/77 (1%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78 S LG+D FLK+L+TQ+++QDP P+ E ++Q+A FS +EQ + +N+T+ + +++ + Sbjct: 24 SSTNLGKDEFLKILMTQVQNQDPLNPVDDKEFISQMATFSSLEQMMNLNTTMTKYVENQD 83 Query: 79 -LAQASSYIGKNITNAD 94 ++IGK++T +D Sbjct: 84 PFTMYVNWIGKSVTFSD 100 >gi|289578427|ref|YP_003477054.1| flagellar hook capping protein [Thermoanaerobacter italicus Ab9] gi|289528140|gb|ADD02492.1| flagellar hook capping protein [Thermoanaerobacter italicus Ab9] Length = 131 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 42/112 (37%), Positives = 66/112 (58%), Gaps = 15/112 (13%) Query: 1 MEINTEVNPTQ-QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59 ME+NT + + S+ SKK LG+D FLKLL+ Q+K+Q+P PM E +AQLA FS Sbjct: 1 MEVNTNYSFSNVYNNSEITSKKQLGKDDFLKLLVAQLKNQNPLNPMDDKEFIAQLAQFST 60 Query: 60 MEQSVQMNSTLQELLKSNNLAQASSYIGKNI----TNADG---SISGVVNAI 104 +EQ +N++ + +A + +GKNI T+ +G ++ G V+A+ Sbjct: 61 LEQMQNLNTSFSAV-------RAINLLGKNIYATVTDNNGESKAVEGKVDAV 105 >gi|256830200|ref|YP_003158928.1| flagellar hook capping protein [Desulfomicrobium baculatum DSM 4028] gi|256579376|gb|ACU90512.1| flagellar hook capping protein [Desulfomicrobium baculatum DSM 4028] Length = 226 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 36/79 (45%), Positives = 52/79 (65%), Gaps = 8/79 (10%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ- 81 LG+DAFLKLL+TQ+++QDP P+ E +AQLA FS +EQ ++ ++ L S+ AQ Sbjct: 24 LGKDAFLKLLVTQLQNQDPLNPLDDKEFIAQLAQFSSLEQMTNISEGIKGL--SDKTAQQ 81 Query: 82 ----ASSYIGKNIT-NADG 95 A +YIGK +T + DG Sbjct: 82 DMLSAVNYIGKEVTASGDG 100 >gi|150021172|ref|YP_001306526.1| flagellar hook capping protein [Thermosipho melanesiensis BI429] gi|149793693|gb|ABR31141.1| flagellar hook capping protein [Thermosipho melanesiensis BI429] Length = 221 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 50/72 (69%), Gaps = 3/72 (4%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN-- 77 KK L ++AFL+LL+TQ+K+QDP EP+K E +AQ+ S +EQ M+ ++Q+ ++S+ Sbjct: 22 KKELDKEAFLELLVTQLKNQDPLEPLKDREFIAQMTQLSTLEQITNMSESVQKFVESSAS 81 Query: 78 -NLAQASSYIGK 88 AQ SS +GK Sbjct: 82 LYRAQVSSMVGK 93 >gi|238916753|ref|YP_002930270.1| flagellar basal-body rod modification protein FlgD [Eubacterium eligens ATCC 27750] gi|238872113|gb|ACR71823.1| flagellar basal-body rod modification protein FlgD [Eubacterium eligens ATCC 27750] Length = 185 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 39/110 (35%), Positives = 66/110 (60%), Gaps = 15/110 (13%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 ++NT ++ T + S S +K TL + FL+L++ ++++QDP EP S+ +AQLA F+Q+E Sbjct: 22 DVNTNISSTGKNNS-SGNKTTLDVNEFLQLMVAEMQNQDPLEPTDNSDYMAQLATFTQVE 80 Query: 62 QSVQMNS-TLQELLKSNNLAQASSYIGKNIT-----NADGSISGVVNAIQ 105 + +MN+ TLQ + AS +GK + N+DG I G V+ + Sbjct: 81 ATKEMNTNTLQGM--------ASDLVGKQVIMTTNQNSDGFIGGTVDYWE 122 >gi|154250213|ref|YP_001411038.1| flagellar hook capping protein [Fervidobacterium nodosum Rt17-B1] gi|154154149|gb|ABS61381.1| flagellar hook capping protein [Fervidobacterium nodosum Rt17-B1] Length = 218 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/88 (43%), Positives = 53/88 (60%), Gaps = 6/88 (6%) Query: 7 VNPTQQEFSKSK---SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 VN FS S +KK L ++AFLKLLITQ+K QDP EPMK + +AQ++ S +EQ Sbjct: 5 VNSMSNLFSTSTDRTTKKDLDKEAFLKLLITQLKSQDPLEPMKDRDFIAQMSQLSSLEQV 64 Query: 64 VQMNSTLQELLKSN---NLAQASSYIGK 88 + M+ ++Q + + QA S IGK Sbjct: 65 MNMSKSVQSFVDTAAQLYRTQAVSMIGK 92 >gi|15895425|ref|NP_348774.1| flagellar hook assembly protein FlgD [Clostridium acetobutylicum ATCC 824] gi|15025149|gb|AAK80114.1|AE007716_3 Flagellar hook assembly protein FlgD [Clostridium acetobutylicum ATCC 824] gi|325509571|gb|ADZ21207.1| Flagellar hook assembly protein FlgD [Clostridium acetobutylicum EA 2018] Length = 239 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 7/70 (10%) Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ 81 TLGQDAFLK+LI ++ HQDPT +++ +AQLA FS +EQ +N T+ + Sbjct: 35 TLGQDAFLKILIAEMSHQDPTSQQDSTQYIAQLAQFSNLEQMTNLNRTM-------TFSG 87 Query: 82 ASSYIGKNIT 91 ASS +G +T Sbjct: 88 ASSLMGGTVT 97 >gi|254510795|ref|ZP_05122862.1| basal-body rod modification protein FlgD [Rhodobacteraceae bacterium KLH11] gi|221534506|gb|EEE37494.1| basal-body rod modification protein FlgD [Rhodobacteraceae bacterium KLH11] Length = 221 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 45/66 (68%), Gaps = 3/66 (4%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQASS 84 FL++L Q ++QDP EP+ +SE +QLA FS +EQ VQ N+ L +L L S NL Q +S Sbjct: 33 FLRMLTVQARNQDPLEPLDSSEYASQLAQFSMVEQQVQANALLSDLSLTLGSVNLNQLAS 92 Query: 85 YIGKNI 90 ++G ++ Sbjct: 93 WVGMDV 98 >gi|163793270|ref|ZP_02187245.1| Flagellar hook capping protein [alpha proteobacterium BAL199] gi|159181072|gb|EDP65587.1| Flagellar hook capping protein [alpha proteobacterium BAL199] Length = 222 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 32/68 (47%), Positives = 44/68 (64%), Gaps = 3/68 (4%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE---LLKSNNLAQA 82 D FL LL TQ+K+QDP +PM SE V QL FS +EQ + N L++ LL S + A + Sbjct: 26 DMFLTLLTTQLKNQDPLDPMDNSEMVNQLVQFSNVEQQIAQNKNLEQMILLLNSQSAASS 85 Query: 83 SSYIGKNI 90 SYIG+++ Sbjct: 86 VSYIGRDV 93 >gi|104782844|ref|YP_609342.1| flagellar basal body rod modification protein [Pseudomonas entomophila L48] gi|95111831|emb|CAK16555.1| flagellar Basal-body rod modification protein FlgD [Pseudomonas entomophila L48] Length = 234 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 49/71 (69%), Gaps = 3/71 (4%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNL 79 LG+DAFL+LL+TQ++HQ+P +P E VAQLA FS +E +NS++ + + S+ Sbjct: 38 LGKDAFLQLLVTQMQHQNPLDPQDNGEFVAQLAQFSSLEGIQTLNSSVNSIITGMGSSQA 97 Query: 80 AQASSYIGKNI 90 QASS +G+++ Sbjct: 98 LQASSLVGRSV 108 >gi|146277709|ref|YP_001167868.1| flagellar hook capping protein [Rhodobacter sphaeroides ATCC 17025] gi|145555950|gb|ABP70563.1| flagellar hook capping protein [Rhodobacter sphaeroides ATCC 17025] Length = 225 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 34/79 (43%), Positives = 51/79 (64%), Gaps = 3/79 (3%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ--- 71 +++K LGQ+ FLKLL TQ+++QDP +PM+ E +AQ+A FS + Q+N TL Sbjct: 21 TQAKGSSNLGQEDFLKLLTTQLQNQDPFQPMENGEFLAQMAQFSTVSGIEQLNGTLSGIG 80 Query: 72 ELLKSNNLAQASSYIGKNI 90 E L S A A+S IG+++ Sbjct: 81 EGLGSFRTATAASLIGRSV 99 >gi|138894747|ref|YP_001125200.1| flagellar basal body rod modification protein [Geobacillus thermodenitrificans NG80-2] gi|196247631|ref|ZP_03146333.1| flagellar hook capping protein [Geobacillus sp. G11MC16] gi|134266260|gb|ABO66455.1| Flagellar hook assembly protein [Geobacillus thermodenitrificans NG80-2] gi|196212415|gb|EDY07172.1| flagellar hook capping protein [Geobacillus sp. G11MC16] Length = 142 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 59/94 (62%), Gaps = 5/94 (5%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75 + + LG+D FLK+L+ Q+++QDP PM+ E +AQ+A FS +EQ + + + +Q+ ++ Sbjct: 20 RKTGDQILGKDDFLKILLAQLQNQDPLNPMEDREFIAQMASFSSLEQMMNIANLMQQWMQ 79 Query: 76 S---NNLAQASSYIGKNIT--NADGSISGVVNAI 104 + + L + S +IGK + D ++S VV ++ Sbjct: 80 ASGRDALLRYSEWIGKTVHWQEDDSTMSAVVQSV 113 >gi|296283233|ref|ZP_06861231.1| flagellar hook capping protein [Citromicrobium bathyomarinum JL354] Length = 215 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 54/78 (69%), Gaps = 4/78 (5%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS---NNLAQA 82 D FLKLL TQ+++QDP +PM+ SE QL +SQ+EQS+Q + L+++L + ++AQ+ Sbjct: 23 DMFLKLLTTQMQNQDPLDPMETSEYTQQLTQYSQVEQSIQQTAALKDILSALSTQDIAQS 82 Query: 83 SSYIGKNITNADGSISGV 100 ++++G+ D S +G+ Sbjct: 83 ANFLGQR-AELDSSTAGL 99 >gi|310816816|ref|YP_003964780.1| flagellar hook capping protein, putative [Ketogulonicigenium vulgare Y25] gi|308755551|gb|ADO43480.1| flagellar hook capping protein, putative [Ketogulonicigenium vulgare Y25] Length = 217 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 43/66 (65%), Gaps = 3/66 (4%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS---NNLAQASS 84 FLK+L+ Q+++QDP P+ ++E AQLA FS +EQ VQ N L +L+ NL S Sbjct: 31 FLKMLVAQVQNQDPLNPIDSNEYAAQLATFSGVEQQVQTNQLLNQLIAQTGIGNLGAMSG 90 Query: 85 YIGKNI 90 +IGK++ Sbjct: 91 WIGKDV 96 >gi|307944134|ref|ZP_07659475.1| flagellar hook capping protein [Roseibium sp. TrichSKD4] gi|307772480|gb|EFO31700.1| flagellar hook capping protein [Roseibium sp. TrichSKD4] Length = 219 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 48/72 (66%), Gaps = 3/72 (4%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS--- 84 FL LL TQI++QDP +P+ ++E QL +S +EQ++Q N L +++++ QASS Sbjct: 29 FLSLLTTQIQYQDPLDPLDSAEYTKQLVQYSSVEQAIQSNQHLAKMVEAMQAGQASSYVN 88 Query: 85 YIGKNITNADGS 96 YIG +IT + G+ Sbjct: 89 YIGSDITASGGT 100 >gi|16799779|ref|NP_470047.1| flagellar basal body rod modification protein [Listeria innocua Clip11262] gi|16413156|emb|CAC95936.1| lin0704 [Listeria innocua Clip11262] gi|313620065|gb|EFR91578.1| flagellar hook capping protein [Listeria innocua FSL S4-378] Length = 140 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 39/111 (35%), Positives = 68/111 (61%), Gaps = 7/111 (6%) Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST---LQELLKSN 77 KTLG+D F+KL +T +++QDP+ P+ +E ++Q+A S MEQ M + L E +++ Sbjct: 24 KTLGKDDFMKLFLTSLQYQDPSSPLDTNEMMSQMAQLSLMEQVANMTTAVDKLSEQAQNS 83 Query: 78 NLAQASSYIGKNITNA--DGS-ISGVVNAIQVSSTG-LTAITVDNTEIPIT 124 L A ++IGK+I +G ISG V ++Q ++ G + I ++ +P+T Sbjct: 84 ALQSAVNFIGKDIKGVSLNGEVISGQVESVQQTTNGVMLKIKDQDSLVPMT 134 >gi|221636049|ref|YP_002523925.1| flagellar hook capping protein [Thermomicrobium roseum DSM 5159] gi|221158205|gb|ACM07323.1| flagellar hook capping protein [Thermomicrobium roseum DSM 5159] Length = 146 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 36/107 (33%), Positives = 59/107 (55%), Gaps = 4/107 (3%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82 L + AFL LL+ Q+K+QDP PM+ E +AQLA + +EQ Q+N T+ + + L Q Sbjct: 25 LDKQAFLMLLVAQLKNQDPMNPMQDREFIAQLAQLNTLEQLQQLNETVAAMAQHAALGQV 84 Query: 83 SSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129 + Y+G+ ++ D + +V V +T L V + ++ G RI Sbjct: 85 AGYLGRVVSGLDRTSGDLVTGTVVRATILDGAAV----LELSGGQRI 127 >gi|256004790|ref|ZP_05429765.1| flagellar hook capping protein [Clostridium thermocellum DSM 2360] gi|255991240|gb|EEU01347.1| flagellar hook capping protein [Clostridium thermocellum DSM 2360] gi|316940771|gb|ADU74805.1| flagellar hook capping protein [Clostridium thermocellum DSM 1313] Length = 323 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 39/124 (31%), Positives = 67/124 (54%), Gaps = 16/124 (12%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74 S ++ LG+D FL LLITQ+++QDP P+ E ++Q+A FS +EQ +Q L Sbjct: 23 STQRNTGELGKDEFLNLLITQLQYQDPLNPVDDKEFISQMAQFSALEQ-------MQNLN 75 Query: 75 KSNNLAQASSYIGKNITN--------ADGSISGVVNAIQVSSTGLTAITVDNTEIPITTG 126 KS + +A IGK IT G + G+V ++++ + G + V+ ++P+ Sbjct: 76 KSFSATKAFGMIGKYITGTTSNGSDSGAGFVEGIVRSVKMEN-GKILLEVNGLDVPVDNV 134 Query: 127 IRIS 130 + +S Sbjct: 135 LSVS 138 >gi|313624711|gb|EFR94666.1| flagellar hook capping protein [Listeria innocua FSL J1-023] Length = 140 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 39/111 (35%), Positives = 68/111 (61%), Gaps = 7/111 (6%) Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST---LQELLKSN 77 KTLG+D F+KL +T +++QDP+ P+ +E ++Q+A S MEQ M + L E +++ Sbjct: 24 KTLGKDDFMKLFLTSLQYQDPSSPLDTNEMMSQMAQLSLMEQVANMTTAVDKLSEQAQNS 83 Query: 78 NLAQASSYIGKNITNA--DGS-ISGVVNAIQVSSTG-LTAITVDNTEIPIT 124 L A ++IGK+I +G ISG V ++Q ++ G + I ++ +P+T Sbjct: 84 ALQSAVNFIGKDIKGVSLNGEVISGQVESVQQTTNGVMLKIKDQDSLVPMT 134 >gi|126462485|ref|YP_001043599.1| flagellar hook capping protein [Rhodobacter sphaeroides ATCC 17029] gi|126104149|gb|ABN76827.1| flagellar hook capping protein [Rhodobacter sphaeroides ATCC 17029] Length = 223 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 52/82 (63%), Gaps = 3/82 (3%) Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 Q +++K K LGQ FL LL TQ+++QDP +PM+ E +AQ+A FS + Q+NSTL Sbjct: 16 QTSTQAKGKSNLGQQDFLTLLTTQLQNQDPFQPMENGEFLAQMAQFSTVSGIEQLNSTLT 75 Query: 72 EL---LKSNNLAQASSYIGKNI 90 + L + A A+S IGK++ Sbjct: 76 GIGDGLGAFRTATAASLIGKSV 97 >gi|220929461|ref|YP_002506370.1| flagellar hook capping protein [Clostridium cellulolyticum H10] gi|219999789|gb|ACL76390.1| flagellar hook capping protein [Clostridium cellulolyticum H10] Length = 285 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/86 (38%), Positives = 53/86 (61%), Gaps = 7/86 (8%) Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65 E ++QE + K+ LG++ FL LL+TQ+++QDP +P+ E +AQ+A FS +EQ Sbjct: 18 ESTKSKQEAAARKTGGELGKNDFLNLLVTQLRYQDPLQPVDDKEFIAQMAQFSSLEQMQN 77 Query: 66 MNSTLQELLKSNNLAQASSYIGKNIT 91 MN ++ + +QA + IGK IT Sbjct: 78 MNGSMTK-------SQAFNLIGKVIT 96 >gi|83309604|ref|YP_419868.1| flagellar hook capping protein [Magnetospirillum magneticum AMB-1] gi|82944445|dbj|BAE49309.1| Flagellar hook capping protein [Magnetospirillum magneticum AMB-1] Length = 274 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 39/98 (39%), Positives = 56/98 (57%), Gaps = 10/98 (10%) Query: 20 KKTLGQD--AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77 K TLG + FL +L TQ+KHQDP PM +++ QL FS +EQ + NS L++L+K Sbjct: 24 KATLGSNFNTFLTMLTTQLKHQDPLSPMDSTQFTNQLVQFSSVEQQINANSNLEKLIKLQ 83 Query: 78 NLAQAS---SYIGKNITNADGSISGVVNAIQVSSTGLT 112 AQ S SY+G+ + +SG +Q S+ LT Sbjct: 84 QTAQTSQGISYLGQTV-----EVSGTDLPLQDSAASLT 116 >gi|125972993|ref|YP_001036903.1| flagellar hook capping protein [Clostridium thermocellum ATCC 27405] gi|281417204|ref|ZP_06248224.1| flagellar hook capping protein [Clostridium thermocellum JW20] gi|125713218|gb|ABN51710.1| flagellar hook capping protein [Clostridium thermocellum ATCC 27405] gi|281408606|gb|EFB38864.1| flagellar hook capping protein [Clostridium thermocellum JW20] Length = 323 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 39/124 (31%), Positives = 67/124 (54%), Gaps = 16/124 (12%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74 S ++ LG+D FL LLITQ+++QDP P+ E ++Q+A FS +EQ +Q L Sbjct: 23 STQRNTGELGKDEFLNLLITQLQYQDPLNPVDDKEFISQMAQFSALEQ-------MQNLN 75 Query: 75 KSNNLAQASSYIGKNITN--------ADGSISGVVNAIQVSSTGLTAITVDNTEIPITTG 126 KS + +A IGK IT G + G+V ++++ + G + V+ ++P+ Sbjct: 76 KSFSATKAFGMIGKYITGTTSNGSDSGAGFVEGIVRSVKMEN-GKILLEVNGLDVPVDNV 134 Query: 127 IRIS 130 + +S Sbjct: 135 LSVS 138 >gi|325274801|ref|ZP_08140829.1| flagellar basal body rod modification protein [Pseudomonas sp. TJI-51] gi|324100069|gb|EGB97887.1| flagellar basal body rod modification protein [Pseudomonas sp. TJI-51] Length = 233 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 32/79 (40%), Positives = 51/79 (64%), Gaps = 3/79 (3%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL- 73 S + LG+DAFL+LL+TQ+++Q+P +P + E VAQLA FS +E +N + + Sbjct: 28 STGAAGSALGKDAFLQLLVTQMQNQNPLDPQENGEFVAQLAQFSSLESMQSLNDAVTYIA 87 Query: 74 --LKSNNLAQASSYIGKNI 90 L+S+ QASS +G+N+ Sbjct: 88 AGLQSSQALQASSLVGRNV 106 >gi|26991078|ref|NP_746503.1| flagellar basal body rod modification protein [Pseudomonas putida KT2440] gi|24986113|gb|AAN69967.1|AE016635_3 flagellar basal-body rod modification protein FlgD [Pseudomonas putida KT2440] Length = 233 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 32/79 (40%), Positives = 51/79 (64%), Gaps = 3/79 (3%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL- 73 S + LG+DAFL+LL+TQ+++Q+P +P + E VAQLA FS +E +N + + Sbjct: 28 STGAAGSALGKDAFLQLLVTQMQNQNPLDPQENGEFVAQLAQFSSLESMQSLNDAVTYIA 87 Query: 74 --LKSNNLAQASSYIGKNI 90 L+S+ QASS +G+N+ Sbjct: 88 AGLQSSQALQASSLVGRNV 106 >gi|313497760|gb|ADR59126.1| FlgD [Pseudomonas putida BIRD-1] Length = 233 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 32/79 (40%), Positives = 51/79 (64%), Gaps = 3/79 (3%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL- 73 S + LG+DAFL+LL+TQ+++Q+P +P + E VAQLA FS +E +N + + Sbjct: 28 STGAAGSALGKDAFLQLLVTQMQNQNPLDPQENGEFVAQLAQFSSLESMQSLNDAVTYIA 87 Query: 74 --LKSNNLAQASSYIGKNI 90 L+S+ QASS +G+N+ Sbjct: 88 AGLQSSQALQASSLVGRNV 106 >gi|332558509|ref|ZP_08412831.1| Flagellar scaffolding protein FlgD [Rhodobacter sphaeroides WS8N] gi|6502602|gb|AAF14369.1|AF133240_3 flagellar scaffolding protein FlgD [Rhodobacter sphaeroides] gi|332276221|gb|EGJ21536.1| Flagellar scaffolding protein FlgD [Rhodobacter sphaeroides WS8N] Length = 223 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 52/82 (63%), Gaps = 3/82 (3%) Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 Q +++K K LGQ FL LL TQ+++QDP +PM+ E +AQ+A FS + Q+NSTL Sbjct: 16 QTSTQAKGKSNLGQQDFLTLLTTQLQNQDPFQPMENGEFLAQMAQFSTVSGIEQLNSTLT 75 Query: 72 EL---LKSNNLAQASSYIGKNI 90 + L + A A+S IGK++ Sbjct: 76 GIGDGLGAFRTATAASLIGKSV 97 >gi|222053609|ref|YP_002535971.1| flagellar hook capping protein [Geobacter sp. FRC-32] gi|221562898|gb|ACM18870.1| flagellar hook capping protein [Geobacter sp. FRC-32] Length = 221 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 32/71 (45%), Positives = 50/71 (70%), Gaps = 3/71 (4%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL-KSNNLA- 80 L +D FL+L +TQ+++QDP P +S+ + QLA +++EQS N+ LQ +L +SNN+A Sbjct: 24 LNKDDFLRLFVTQLQNQDPLNPQDSSQFITQLAQITEVEQSYNTNTNLQSILTQSNNMAS 83 Query: 81 -QASSYIGKNI 90 A S+IGK+I Sbjct: 84 LSAVSFIGKSI 94 >gi|77463653|ref|YP_353157.1| flagellar scaffolding protein FlgD [Rhodobacter sphaeroides 2.4.1] gi|221639496|ref|YP_002525758.1| Flagellar scaffolding protein FlgD [Rhodobacter sphaeroides KD131] gi|77388071|gb|ABA79256.1| Flagellar scaffolding protein FlgD [Rhodobacter sphaeroides 2.4.1] gi|221160277|gb|ACM01257.1| Flagellar scaffolding protein FlgD [Rhodobacter sphaeroides KD131] Length = 223 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 52/82 (63%), Gaps = 3/82 (3%) Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 Q +++K K LGQ FL LL TQ+++QDP +PM+ E +AQ+A FS + Q+NSTL Sbjct: 16 QTSTQAKGKSNLGQQDFLTLLTTQLQNQDPFQPMENGEFLAQMAQFSTVSGIEQLNSTLT 75 Query: 72 EL---LKSNNLAQASSYIGKNI 90 + L + A A+S IGK++ Sbjct: 76 GIGDGLGAFRTATAASLIGKSV 97 >gi|260886639|ref|ZP_05897902.1| flagellar hook capping protein [Selenomonas sputigena ATCC 35185] gi|330839529|ref|YP_004414109.1| flagellar hook capping protein [Selenomonas sputigena ATCC 35185] gi|260863782|gb|EEX78282.1| flagellar hook capping protein [Selenomonas sputigena ATCC 35185] gi|329747293|gb|AEC00650.1| flagellar hook capping protein [Selenomonas sputigena ATCC 35185] Length = 178 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 33/81 (40%), Positives = 49/81 (60%), Gaps = 7/81 (8%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK- 75 ++ +LG+DAFL+LL+TQ++HQDP P ++ +AQLA FS +EQ QM + + K Sbjct: 29 ARKNDSLGKDAFLQLLVTQLRHQDPLSPDDNTQYIAQLAQFSSLEQMTQMVKGFENVSKL 88 Query: 76 ------SNNLAQASSYIGKNI 90 S + S+ IGKNI Sbjct: 89 VSNIDSSVLVGSLSNMIGKNI 109 >gi|23015642|ref|ZP_00055412.1| COG1843: Flagellar hook capping protein [Magnetospirillum magnetotacticum MS-1] Length = 277 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 33/76 (43%), Positives = 47/76 (61%), Gaps = 5/76 (6%) Query: 20 KKTLGQD--AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77 K TLG + FL +L TQ+KHQDP PM +++ QL FS +EQ + NS L++L+K Sbjct: 28 KATLGSNFNTFLTMLTTQLKHQDPLSPMDSTQFTNQLVQFSSVEQQINANSNLEKLIKLQ 87 Query: 78 NLAQAS---SYIGKNI 90 AQ S SY+G+ + Sbjct: 88 QTAQTSQGISYLGQTV 103 >gi|49082024|gb|AAT50412.1| PA1079 [synthetic construct] Length = 238 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 31/76 (40%), Positives = 48/76 (63%), Gaps = 3/76 (3%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL--- 74 K LG+D FLKLL+ Q+K+QDP P + E +AQLA FS +E +N +++ +L Sbjct: 35 KGSSNLGKDEFLKLLVAQLKNQDPMSPQQNGEFIAQLAQFSTVEGVQSLNKSMESILSNY 94 Query: 75 KSNNLAQASSYIGKNI 90 +S+ QASS +G+ + Sbjct: 95 QSSQALQASSLVGRKV 110 >gi|289433974|ref|YP_003463846.1| flagellar hook assembly protein FlgD [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170218|emb|CBH26758.1| flagellar hook assembly protein FlgD [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 140 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 38/111 (34%), Positives = 69/111 (62%), Gaps = 7/111 (6%) Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST---LQELLKSN 77 KTLG+D F+KL +T +++QDP+ P+ +E ++Q+A S MEQ M + L E +++ Sbjct: 24 KTLGKDDFMKLFLTSLQYQDPSSPLDTNEMMSQMAQLSLMEQVANMTTAVDKLSEQAQNS 83 Query: 78 NLAQASSYIGKNI--TNADGS-ISGVVNAIQVSSTG-LTAITVDNTEIPIT 124 L A ++IGK+I + +G ISG V ++Q ++ G + + ++ +P+T Sbjct: 84 ALQSAVNFIGKDIKGVSLNGEVISGQVESVQQTTNGVMLKLKEQDSLVPLT 134 >gi|312879591|ref|ZP_07739391.1| flagellar hook capping protein [Aminomonas paucivorans DSM 12260] gi|310782882|gb|EFQ23280.1| flagellar hook capping protein [Aminomonas paucivorans DSM 12260] Length = 139 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 34/107 (31%), Positives = 59/107 (55%), Gaps = 4/107 (3%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79 K LG+D FLKLLI Q+ +QDP +P+K + +AQ+A F+ +EQ+ M ++ L K ++ Sbjct: 27 KNELGKDDFLKLLIAQLTNQDPLDPLKDQDFIAQMAQFTALEQTTNMAKGIETLTKL-SM 85 Query: 80 AQASSYIGKNITNADG---SISGVVNAIQVSSTGLTAITVDNTEIPI 123 A Y+G+ + D S +G V ++ +T D + + + Sbjct: 86 TSAVGYVGRVVGYTDDEGNSKAGTVQYVEFKDGAVTLKLTDGSSLAL 132 >gi|116049008|ref|YP_792190.1| flagellar basal body rod modification protein [Pseudomonas aeruginosa UCBPP-PA14] gi|296390557|ref|ZP_06880032.1| flagellar basal body rod modification protein [Pseudomonas aeruginosa PAb1] gi|115584229|gb|ABJ10244.1| flagellar basal-body rod modification protein FlgD [Pseudomonas aeruginosa UCBPP-PA14] Length = 237 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 31/76 (40%), Positives = 48/76 (63%), Gaps = 3/76 (3%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL--- 74 K LG+D FLKLL+ Q+K+QDP P + E +AQLA FS +E +N +++ +L Sbjct: 35 KGSSNLGKDEFLKLLVAQLKNQDPMSPQQNGEFIAQLAQFSTVEGVQSLNKSMESILSNY 94 Query: 75 KSNNLAQASSYIGKNI 90 +S+ QASS +G+ + Sbjct: 95 QSSQALQASSLVGRKV 110 >gi|315301939|ref|ZP_07872941.1| flagellar hook capping protein [Listeria ivanovii FSL F6-596] gi|313629692|gb|EFR97823.1| flagellar hook capping protein [Listeria ivanovii FSL F6-596] gi|313634373|gb|EFS00968.1| flagellar hook capping protein [Listeria seeligeri FSL N1-067] gi|313639058|gb|EFS04045.1| flagellar hook capping protein [Listeria seeligeri FSL S4-171] Length = 140 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 36/97 (37%), Positives = 62/97 (63%), Gaps = 6/97 (6%) Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST---LQELLKSN 77 KTLG+D F+KL +T +++QDP+ P+ +E ++Q+A S MEQ M + L E +++ Sbjct: 24 KTLGKDDFMKLFLTSLQYQDPSSPLDTNEMMSQMAQLSLMEQVANMTTAVDKLSEQAQNS 83 Query: 78 NLAQASSYIGKNI--TNADGS-ISGVVNAIQVSSTGL 111 L A ++IGK+I + +G ISG V ++Q ++ G+ Sbjct: 84 ALQSAVNFIGKDIKGVSLNGEVISGQVESVQQTTNGV 120 >gi|15596276|ref|NP_249770.1| flagellar basal body rod modification protein [Pseudomonas aeruginosa PAO1] gi|107100524|ref|ZP_01364442.1| hypothetical protein PaerPA_01001549 [Pseudomonas aeruginosa PACS2] gi|218892957|ref|YP_002441826.1| flagellar basal body rod modification protein [Pseudomonas aeruginosa LESB58] gi|254234215|ref|ZP_04927538.1| flagellar basal-body rod modification protein FlgD [Pseudomonas aeruginosa C3719] gi|254239437|ref|ZP_04932759.1| flagellar basal-body rod modification protein FlgD [Pseudomonas aeruginosa 2192] gi|313106034|ref|ZP_07792293.1| flagellar basal-body rod modification protein FlgD [Pseudomonas aeruginosa 39016] gi|9946995|gb|AAG04468.1|AE004539_10 flagellar basal-body rod modification protein FlgD [Pseudomonas aeruginosa PAO1] gi|126166146|gb|EAZ51657.1| flagellar basal-body rod modification protein FlgD [Pseudomonas aeruginosa C3719] gi|126192815|gb|EAZ56878.1| flagellar basal-body rod modification protein FlgD [Pseudomonas aeruginosa 2192] gi|218773185|emb|CAW28997.1| flagellar basal-body rod modification protein FlgD [Pseudomonas aeruginosa LESB58] gi|310878795|gb|EFQ37389.1| flagellar basal-body rod modification protein FlgD [Pseudomonas aeruginosa 39016] Length = 237 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 31/76 (40%), Positives = 48/76 (63%), Gaps = 3/76 (3%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL--- 74 K LG+D FLKLL+ Q+K+QDP P + E +AQLA FS +E +N +++ +L Sbjct: 35 KGSSNLGKDEFLKLLVAQLKNQDPMSPQQNGEFIAQLAQFSTVEGVQSLNKSMESILSNY 94 Query: 75 KSNNLAQASSYIGKNI 90 +S+ QASS +G+ + Sbjct: 95 QSSQALQASSLVGRKV 110 >gi|220913725|ref|YP_002489034.1| flagellar hook capping protein [Arthrobacter chlorophenolicus A6] gi|219860603|gb|ACL40945.1| flagellar hook capping protein [Arthrobacter chlorophenolicus A6] Length = 138 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 34/106 (32%), Positives = 63/106 (59%), Gaps = 4/106 (3%) Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA 80 ++L D F+KLL+TQ+K+QDP PM ++ +AQ S ME+ ++++ +E Sbjct: 22 QSLDSDTFMKLLVTQLKYQDPGAPMDTNQMMAQSVQLSMMEKMTELSTGAKESFSLQMRT 81 Query: 81 QASSYIGKNI--TNADGSI-SGVVNAIQVSSTGLTAITVDNTEIPI 123 A+ +G + T DG+ SG+ +A+ +TG+ +TV N+++P+ Sbjct: 82 AAAQIVGSEVAYTLPDGTAGSGIASAVSF-TTGVPVVTVGNSKVPL 126 >gi|328542761|ref|YP_004302870.1| flagellar hook capping protein [polymorphum gilvum SL003B-26A1] gi|326412507|gb|ADZ69570.1| Flagellar hook capping protein [Polymorphum gilvum SL003B-26A1] Length = 220 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 34/79 (43%), Positives = 50/79 (63%), Gaps = 5/79 (6%) Query: 18 KSKKTL--GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75 KS++TL D FL LL TQIK+QDP +P+ ++ QL +S +EQS+ N+ L++L+ Sbjct: 19 KSRETLLGSYDLFLTLLTTQIKNQDPLDPLDTAQFTNQLVQYSSVEQSILTNTYLEQLMA 78 Query: 76 SNNLAQAS---SYIGKNIT 91 S QAS SY+G +T Sbjct: 79 SVKSGQASGYVSYLGAEVT 97 >gi|152989628|ref|YP_001349651.1| flagellar basal body rod modification protein [Pseudomonas aeruginosa PA7] gi|150964786|gb|ABR86811.1| flagellar basal-body rod modification protein FlgD [Pseudomonas aeruginosa PA7] Length = 227 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 31/76 (40%), Positives = 48/76 (63%), Gaps = 3/76 (3%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL--- 74 K LG+D FLKLL+ Q+K+QDP P + E +AQLA FS +E +N +++ +L Sbjct: 25 KGSSNLGKDEFLKLLVAQLKNQDPMSPQQNGEFIAQLAQFSTVEGVQSLNKSMESILSNY 84 Query: 75 KSNNLAQASSYIGKNI 90 +S+ QASS +G+ + Sbjct: 85 QSSQALQASSLVGRKV 100 >gi|23099017|ref|NP_692483.1| flagellar basal body rod modification protein [Oceanobacillus iheyensis HTE831] gi|22777245|dbj|BAC13518.1| flagellar hook assembly protein [Oceanobacillus iheyensis HTE831] Length = 172 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 39/110 (35%), Positives = 66/110 (60%), Gaps = 13/110 (11%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA-- 80 LG+D FLKLL+ Q+++QDPT+PM S+ ++Q+A FS +EQ + M++++ E+L +N+L Sbjct: 23 LGKDEFLKLLMVQLQNQDPTKPMDDSQFMSQMATFSSLEQMMNMSNSI-EMLVNNSLVSP 81 Query: 81 --QASSYIGKNIT-----NADGSISGVVNAIQVSST---GLTAITVDNTE 120 Q S IG+ ++ G +G+ +I V T G ++N E Sbjct: 82 VLQYSHMIGEEVSYMTFDEETGKETGIETSIVVGVTQNEGWAVFELENGE 131 >gi|332187922|ref|ZP_08389655.1| flagellar hook capping family protein [Sphingomonas sp. S17] gi|332012083|gb|EGI54155.1| flagellar hook capping family protein [Sphingomonas sp. S17] Length = 231 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 37/90 (41%), Positives = 51/90 (56%), Gaps = 7/90 (7%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--- 73 +K TL Q AFL LL Q+K+QDP PM ++ VAQ+A FS + +MN+TL + Sbjct: 30 AKKSTTLDQSAFLTLLTAQLKNQDPFAPMDNTQMVAQMAQFSSVAGISEMNTTLASIATK 89 Query: 74 LKSNNLAQASSYIGKNI----TNADGSISG 99 L + A A +Y+GK + T A G SG Sbjct: 90 LNATTPADAMNYVGKTVLTEGTTAYGRTSG 119 >gi|238924163|ref|YP_002937679.1| flagellar hook capping protein [Eubacterium rectale ATCC 33656] gi|238875838|gb|ACR75545.1| flagellar hook capping protein [Eubacterium rectale ATCC 33656] Length = 237 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 37/107 (34%), Positives = 56/107 (52%), Gaps = 7/107 (6%) Query: 5 TEVNPTQQEFSKSK--SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 T PTQ + S S LG D FLKLL ++++QDP EP ++ VAQ+A FSQ+E Sbjct: 15 TNTTPTQNRKTSSAKASGSNLGYDDFLKLLSAEMQYQDPLEPTSNTDYVAQMATFSQLEA 74 Query: 63 SVQMNSTLQELLKSNNLAQASSYIGKNI-----TNADGSISGVVNAI 104 ++ M ++ + A S +GK + +A G SG V+ + Sbjct: 75 TLSMKESMSSSYDQTTKSAALSLVGKEVIVTDKDSASGYYSGKVDYV 121 >gi|323705439|ref|ZP_08117014.1| flagellar hook capping protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323535341|gb|EGB25117.1| flagellar hook capping protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 134 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 35/95 (36%), Positives = 60/95 (63%), Gaps = 13/95 (13%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82 LG+D FL+LL+TQ+++QDP PM E +AQ+A FS +EQ +Q L +S + +A Sbjct: 28 LGKDQFLQLLVTQLENQDPLNPMDDKEFIAQMAQFSALEQ-------MQNLNESFSAVKA 80 Query: 83 SSYIGKNIT---NADGS---ISGVVNAIQVSSTGL 111 S +GK +T +++GS ++G V++++ + L Sbjct: 81 YSLLGKTVTASVDSNGSSSTVTGKVDSVKFDGSNL 115 >gi|218885351|ref|YP_002434672.1| flagellar hook capping protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756305|gb|ACL07204.1| flagellar hook capping protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 263 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 46/128 (35%), Positives = 67/128 (52%), Gaps = 12/128 (9%) Query: 11 QQEFSKSKSKKT----LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66 +Q F+ KT L + AFL LL+ Q+ HQDP PM E VAQLA F+ +EQ + Sbjct: 11 EQTFNNYLGAKTKNDELDKQAFLNLLVAQLSHQDPLNPMDDKEFVAQLAQFTSLEQLTNI 70 Query: 67 NSTLQEL---LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPI 123 ++ + +L K ++ A YIGK +T + IS Q STG T +V + + Sbjct: 71 STGITDLNASAKQQQMSAAVGYIGKEVTASGYEIS---KTSQKDSTGATVNSV--STVYF 125 Query: 124 TTGIRISN 131 TT ++SN Sbjct: 126 TTQEQVSN 133 >gi|148554190|ref|YP_001261772.1| flagellar hook capping protein [Sphingomonas wittichii RW1] gi|148499380|gb|ABQ67634.1| flagellar hook capping protein [Sphingomonas wittichii RW1] Length = 226 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 37/95 (38%), Positives = 58/95 (61%), Gaps = 11/95 (11%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS- 76 KS ++L Q+ FLKLL TQ++ QDP P+ ++ VAQ+A FSQ +MN +L+ +++S Sbjct: 26 KSNESLSQNDFLKLLTTQMQTQDPFNPVDNTQMVAQMAQFSQTTGIAEMNQSLKSMVQSL 85 Query: 77 --NNLAQASSYIGKNI--------TNADGSISGVV 101 + +A A+++IGK ADGS +G V Sbjct: 86 QQSRVADAANWIGKAALLPSKAASALADGSFAGNV 120 >gi|89056698|ref|YP_512149.1| flagellar basal body rod modification protein [Jannaschia sp. CCS1] gi|88866247|gb|ABD57124.1| basal-body rod modification protein FlgD [Jannaschia sp. CCS1] Length = 221 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 30/65 (46%), Positives = 42/65 (64%), Gaps = 3/65 (4%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQA 82 D FL+LL TQ+++QDP P ++E AQLA FS +EQ V+ N L++L S N+ Q Sbjct: 31 DMFLRLLTTQMQNQDPLNPSDSTEYTAQLATFSGVEQQVETNDLLRDLQASFASMNMGQL 90 Query: 83 SSYIG 87 S +IG Sbjct: 91 SGWIG 95 >gi|327398497|ref|YP_004339366.1| flagellar hook capping protein [Hippea maritima DSM 10411] gi|327181126|gb|AEA33307.1| flagellar hook capping protein [Hippea maritima DSM 10411] Length = 226 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 3/82 (3%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKS 76 K T+ ++ FLKLL+ Q+++QDP PM + + + +FSQ+EQ + M+ ++ + LK Sbjct: 25 KATIDKEGFLKLLVAQLRYQDPLNPMNNDQFIQENTMFSQLEQLMNMSKSMNKFMGDLKG 84 Query: 77 NNLAQASSYIGKNITNADGSIS 98 N A+SY+GK I+ + I+ Sbjct: 85 NPKEYAASYLGKYISTGENKIN 106 >gi|254504946|ref|ZP_05117097.1| flagellar hook capping protein, putative [Labrenzia alexandrii DFL-11] gi|222441017|gb|EEE47696.1| flagellar hook capping protein, putative [Labrenzia alexandrii DFL-11] Length = 196 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 3/72 (4%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE---LLKSNNLAQASS 84 FL +L TQI++QDP +P+ ++E QL +S +EQS+Q N L+E LL SN + + Sbjct: 8 FLSMLTTQIQNQDPLDPLDSAEYTNQLVQYSNVEQSIQTNKNLEEMISLLSSNQSSAYVN 67 Query: 85 YIGKNITNADGS 96 YIG +T A G+ Sbjct: 68 YIGTEVTAAGGT 79 >gi|291286228|ref|YP_003503044.1| flagellar hook capping protein [Denitrovibrio acetiphilus DSM 12809] gi|290883388|gb|ADD67088.1| flagellar hook capping protein [Denitrovibrio acetiphilus DSM 12809] Length = 232 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 45/133 (33%), Positives = 68/133 (51%), Gaps = 24/133 (18%) Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65 E N TQ E S+S FL L ITQ+++QDPT+PM S + Q A F+Q+E Sbjct: 20 EYNNTQGELSQSD---------FLNLFITQLQNQDPTDPMDDSAMMEQTATFTQVELLTS 70 Query: 66 MNSTLQELL-KSNNL------AQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDN 118 M +L E+ ++NL AS YIGK + DG+ + + S G+ A++ + Sbjct: 71 MEKSLSEIAGGASNLNTQQLMMSASGYIGK-LVEFDGNNTYL-------SDGVAAVSFEA 122 Query: 119 TEIPITTGIRISN 131 E+P T + I + Sbjct: 123 EEVPFKTTVTIKD 135 >gi|291538501|emb|CBL11612.1| Flagellar hook capping protein [Roseburia intestinalis XB6B4] Length = 251 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 35/86 (40%), Positives = 51/86 (59%), Gaps = 6/86 (6%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82 LG D FL+LL ++++QDP EP +E VAQLA FSQME ++ M ST++ SN A Sbjct: 28 LGYDQFLQLLCAEMQYQDPLEPTSNTEYVAQLATFSQMEATLGMQSTIE---SSNANALV 84 Query: 83 SSYIGKNITNADG---SISGVVNAIQ 105 Y+ T++ G + G V+ +Q Sbjct: 85 GKYVIIKTTSSTGETTATEGFVDYVQ 110 >gi|253573525|ref|ZP_04850868.1| flagellar hook capping protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251847053|gb|EES75058.1| flagellar hook capping protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 167 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 48/136 (35%), Positives = 72/136 (52%), Gaps = 22/136 (16%) Query: 8 NPTQQEFSKSKSKKT-LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66 N +Q K+ +K LG+DAFLKL+I Q+++QDP PM ++ VAQ+A F+ +EQ + Sbjct: 13 NYSQSNVQKASTKSNELGKDAFLKLMIAQMQNQDPLSPMDNTQMVAQIAQFTSVEQLTNI 72 Query: 67 NSTLQELLKSNNLAQASSYIGKNIT--------NADGSI----------SGVVNAIQVSS 108 + + L +S L S IGK +T N D S SG+V +I V S Sbjct: 73 SEQIAALGES--LGNDSGLIGKEVTWVTETKTGNYDVSTGKAEVIIEKESGIVESIIVRS 130 Query: 109 TGLTAITVDNTEIPIT 124 G+ + V + EI I+ Sbjct: 131 -GVHYVKVGDKEIKIS 145 >gi|220917664|ref|YP_002492968.1| flagellar hook capping protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219955518|gb|ACL65902.1| flagellar hook capping protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 225 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 35/83 (42%), Positives = 47/83 (56%), Gaps = 11/83 (13%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74 + + + LG+DAFLKLL TQ++HQDP PM + VAQLA FS +EQ + L L Sbjct: 19 APAPASSALGKDAFLKLLTTQLQHQDPLSPMDSQAFVAQLAQFSSVEQLGALGDKLDTL- 77 Query: 75 KSNNLAQASS-------YIGKNI 90 +AQASS +GK + Sbjct: 78 ---AMAQASSNQLGTAALVGKEV 97 >gi|292670235|ref|ZP_06603661.1| flagellar Basal-body rod modification protein FlgD [Selenomonas noxia ATCC 43541] gi|292648187|gb|EFF66159.1| flagellar Basal-body rod modification protein FlgD [Selenomonas noxia ATCC 43541] Length = 174 Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 34/80 (42%), Positives = 49/80 (61%), Gaps = 7/80 (8%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK-- 75 K LG+DAFL+LL+TQ+K+QDP +P SE ++QLA FS +EQ ++ L E+ K Sbjct: 34 KRNDALGKDAFLQLLVTQMKYQDPLDPQDNSEYLSQLAQFSALEQMTNVSKGLSEVSKIV 93 Query: 76 -----SNNLAQASSYIGKNI 90 S + Q SS IG+ + Sbjct: 94 DNINSSVLIGQLSSMIGQPV 113 >gi|320354324|ref|YP_004195663.1| flagellar hook capping protein [Desulfobulbus propionicus DSM 2032] gi|320122826|gb|ADW18372.1| flagellar hook capping protein [Desulfobulbus propionicus DSM 2032] Length = 226 Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 41/121 (33%), Positives = 64/121 (52%), Gaps = 21/121 (17%) Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA 80 K LGQD FL LL+ Q+++QDP P A+E AQLA +SQ+EQ +N + EL + + Sbjct: 20 KALGQDDFLTLLVAQLQNQDPMNPADATEFTAQLAQYSQLEQLFNLNDAMDELTSATTES 79 Query: 81 Q---ASSYIGKNIT-----------------NADGSISGVVNAIQVSSTGLTAITVDNTE 120 Q S IG+++ DGS+SG+ I+ +S+G T T+ ++ Sbjct: 80 QNISTLSLIGQDVVVEGAKFTLGEAPVQIGYKVDGSVSGLSIFIK-NSSGKTVATLSASD 138 Query: 121 I 121 + Sbjct: 139 L 139 >gi|240145499|ref|ZP_04744100.1| basal-body rod modification protein FlgD [Roseburia intestinalis L1-82] gi|257202314|gb|EEV00599.1| basal-body rod modification protein FlgD [Roseburia intestinalis L1-82] gi|291536009|emb|CBL09121.1| Flagellar hook capping protein [Roseburia intestinalis M50/1] Length = 251 Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 35/86 (40%), Positives = 51/86 (59%), Gaps = 6/86 (6%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82 LG D FL+LL ++++QDP EP +E VAQLA FSQME ++ M ST++ SN A Sbjct: 28 LGYDQFLQLLCAEMQYQDPLEPTSNTEYVAQLATFSQMEATLGMQSTIE---SSNANALV 84 Query: 83 SSYIGKNITNADG---SISGVVNAIQ 105 Y+ T++ G + G V+ +Q Sbjct: 85 GKYVIIKTTSSTGETTATEGFVDYVQ 110 >gi|311068149|ref|YP_003973072.1| flagellar basal body rod modification protein [Bacillus atrophaeus 1942] gi|310868666|gb|ADP32141.1| flagellar basal body rod modification protein [Bacillus atrophaeus 1942] Length = 142 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 62/104 (59%), Gaps = 5/104 (4%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN-LAQ 81 LG+D FLK+L+ Q+++QDP P+ E ++Q+A FS +EQ + +N+T+ + + + Sbjct: 26 LGKDEFLKILMKQVQNQDPLNPVDDKEFISQMATFSSLEQMMNLNTTMTKFVDYQDPFTT 85 Query: 82 ASSYIGKNITNADGSI----SGVVNAIQVSSTGLTAITVDNTEI 121 ++IGK+++ ++G +G V++++ S + D EI Sbjct: 86 YVNWIGKDVSWSEGQDGKEQTGKVSSVKHSKGEYFLVLEDGKEI 129 >gi|299822272|ref|ZP_07054158.1| flagellar hook capping protein [Listeria grayi DSM 20601] gi|299815801|gb|EFI83039.1| flagellar hook capping protein [Listeria grayi DSM 20601] Length = 145 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 72/117 (61%), Gaps = 7/117 (5%) Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNN 78 +L +D F+KL +T +++QDP+ P+ ++ ++Q++ + MEQ M+S + +L +S+ Sbjct: 29 SLNKDDFMKLFLTSLQYQDPSSPLDTNQMMSQMSQLAMMEQVSNMSSAVNKLSDQAQSSA 88 Query: 79 LAQASSYIGKNI--TNADGS-ISGVVNAIQVSSTGLTAITVDN-TEIPITTGIRISN 131 + A +IGK+I N +G +SG+V +IQ ++ G+ DN T +P+T ++N Sbjct: 89 MQSAVGFIGKSIKGVNLNGDVVSGLVESIQQTTNGVMLKLKDNDTVVPLTYITEVNN 145 >gi|90021856|ref|YP_527683.1| flagellar basal-body rod modification protein FlgD [Saccharophagus degradans 2-40] gi|89951456|gb|ABD81471.1| flagellar hook capping protein [Saccharophagus degradans 2-40] Length = 238 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 34/87 (39%), Positives = 52/87 (59%), Gaps = 9/87 (10%) Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67 NPT+ + LGQ AFL+L+ITQ+++QDP P + SE +AQLA FS +E ++N Sbjct: 21 NPTEPQ------SNELGQSAFLELMITQLENQDPLSPQENSEFIAQLAQFSSVESLDKLN 74 Query: 68 STLQELLKS---NNLAQASSYIGKNIT 91 + S N QAS+ +G+++T Sbjct: 75 NNFDSFANSFVANQALQASTLVGRSVT 101 >gi|304321137|ref|YP_003854780.1| putative FlgD protein [Parvularcula bermudensis HTCC2503] gi|303300039|gb|ADM09638.1| putative FlgD protein [Parvularcula bermudensis HTCC2503] Length = 202 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 35/86 (40%), Positives = 51/86 (59%), Gaps = 3/86 (3%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82 DAFL LL Q+K+QDP P+ +++ V QLA FS +EQ VQ N T+ LL+S Q Sbjct: 28 DAFLNLLTAQMKNQDPFAPIDSTQFVEQLATFSSLEQQVQTNKYLETMMGLLQSTLGGQQ 87 Query: 83 SSYIGKNITNADGSISGVVNAIQVSS 108 + IG I ++ +ISG + + + S Sbjct: 88 TDVIGAQIGASEITISGAFDPLPIVS 113 >gi|197122872|ref|YP_002134823.1| flagellar hook capping protein [Anaeromyxobacter sp. K] gi|196172721|gb|ACG73694.1| flagellar hook capping protein [Anaeromyxobacter sp. K] Length = 225 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 35/83 (42%), Positives = 47/83 (56%), Gaps = 11/83 (13%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74 + + + LG+DAFLKLL TQ++HQDP PM + VAQLA FS +EQ + L L Sbjct: 19 APAPASSALGKDAFLKLLTTQLQHQDPLSPMDSQAFVAQLAQFSSVEQLGALGDKLDTL- 77 Query: 75 KSNNLAQASS-------YIGKNI 90 +AQASS +GK + Sbjct: 78 ---AMAQASSNQLGTAALVGKEV 97 >gi|315654585|ref|ZP_07907491.1| flagellar hook assembly protein FlgD [Mobiluncus curtisii ATCC 51333] gi|315491049|gb|EFU80668.1| flagellar hook assembly protein FlgD [Mobiluncus curtisii ATCC 51333] Length = 254 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 57/95 (60%), Gaps = 7/95 (7%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82 LG+D F+KLL+ +K+QDPTEPM ++ + Q + + MEQ +QM ++ ++ AQ Sbjct: 70 LGKDDFMKLLLATLKYQDPTEPMDTAKLLEQTSTMTNMEQMIQMTEASKKSFEAQQRAQG 129 Query: 83 SSYIGK----NITNADG---SISGVVNAIQVSSTG 110 ++ +GK + +A G + +G ++A++ + G Sbjct: 130 TTMVGKTAVYDAVDAQGNAVTTAGKIDAVEFLADG 164 >gi|298345997|ref|YP_003718684.1| flagellar hook capping protein [Mobiluncus curtisii ATCC 43063] gi|304390245|ref|ZP_07372199.1| flagellar hook assembly protein FlgD [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315657510|ref|ZP_07910392.1| flagellar hook assembly protein FlgD [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298236058|gb|ADI67190.1| flagellar hook capping protein [Mobiluncus curtisii ATCC 43063] gi|304326727|gb|EFL93971.1| flagellar hook assembly protein FlgD [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315491982|gb|EFU81591.1| flagellar hook assembly protein FlgD [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 254 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 57/95 (60%), Gaps = 7/95 (7%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82 LG+D F+KLL+ +K+QDPTEPM ++ + Q + + MEQ +QM ++ ++ AQ Sbjct: 70 LGKDDFMKLLLATLKYQDPTEPMDTAKLLEQTSTMTNMEQMIQMTEASKKSFEAQQRAQG 129 Query: 83 SSYIGK----NITNADG---SISGVVNAIQVSSTG 110 ++ +GK + +A G + +G ++A++ + G Sbjct: 130 TTMVGKTAVYDAVDAQGNAVTTAGKIDAVEFLADG 164 >gi|86157814|ref|YP_464599.1| flagellar hook capping protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85774325|gb|ABC81162.1| flagellar hook capping protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 225 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 34/80 (42%), Positives = 46/80 (57%), Gaps = 5/80 (6%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL- 73 + + + LG+DAFLKLL TQ++HQDP PM + VAQLA FS +EQ + L L Sbjct: 19 APAPASSALGKDAFLKLLTTQLQHQDPLSPMDSQAFVAQLAQFSSVEQLGALGDKLDTLA 78 Query: 74 ---LKSNNLAQASSYIGKNI 90 SN L A + +GK + Sbjct: 79 VAQASSNQLGTA-ALVGKEV 97 >gi|163733168|ref|ZP_02140612.1| flagellar basal-body rod modification protein, putative [Roseobacter litoralis Och 149] gi|161393703|gb|EDQ18028.1| flagellar basal-body rod modification protein, putative [Roseobacter litoralis Och 149] Length = 226 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 31/63 (49%), Positives = 41/63 (65%), Gaps = 3/63 (4%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQASS 84 FLK+L Q + QDP EP+ +SE AQLA FS +EQ V N L EL L SN++ Q ++ Sbjct: 33 FLKMLTAQARFQDPLEPIDSSEYAAQLAQFSMVEQQVLSNDLLTELGAQLGSNSIGQMAA 92 Query: 85 YIG 87 +IG Sbjct: 93 WIG 95 >gi|110677576|ref|YP_680583.1| flagellar basal body rod modification protein [Roseobacter denitrificans OCh 114] gi|109453692|gb|ABG29897.1| flagellar basal-body rod modification protein, putative [Roseobacter denitrificans OCh 114] Length = 226 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 31/63 (49%), Positives = 41/63 (65%), Gaps = 3/63 (4%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQASS 84 FLK+L Q + QDP EP+ +SE AQLA FS +EQ V N L EL L SN++ Q ++ Sbjct: 33 FLKMLTAQARFQDPLEPIDSSEYAAQLAQFSMVEQQVLSNDLLTELGAQLGSNSIGQMAA 92 Query: 85 YIG 87 +IG Sbjct: 93 WIG 95 >gi|331006030|ref|ZP_08329372.1| Flagellar basal-body rod modification protein FlgD [gamma proteobacterium IMCC1989] gi|330420159|gb|EGG94483.1| Flagellar basal-body rod modification protein FlgD [gamma proteobacterium IMCC1989] Length = 239 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 32/76 (42%), Positives = 48/76 (63%), Gaps = 3/76 (3%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LK 75 S LGQ AFL+L+ITQ+++QDP P + SE +AQLA FS +E ++N+ Sbjct: 30 SGNELGQTAFLELMITQMENQDPLSPQENSEFIAQLAQFSSVEGLERLNTNFDSFTSSFI 89 Query: 76 SNNLAQASSYIGKNIT 91 SN QASS +G++++ Sbjct: 90 SNQALQASSLVGRSVS 105 >gi|254294562|ref|YP_003060585.1| flagellar hook capping protein [Hirschia baltica ATCC 49814] gi|254043093|gb|ACT59888.1| flagellar hook capping protein [Hirschia baltica ATCC 49814] Length = 222 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/68 (44%), Positives = 44/68 (64%), Gaps = 3/68 (4%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA--- 82 D FL LL Q+++QDP EP ++E QL FS +EQ +Q N L++L+ SNN A Sbjct: 30 DTFLTLLTAQLQNQDPLEPTDSTEFTNQLVQFSGVEQQIQTNDALEQLIASNNSATGAAM 89 Query: 83 SSYIGKNI 90 SSY+G+++ Sbjct: 90 SSYLGQSV 97 >gi|68164547|gb|AAY87276.1| predicted flagellar hook capping protein [uncultured bacterium BAC17H8] Length = 231 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/119 (35%), Positives = 67/119 (56%), Gaps = 13/119 (10%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 ++E + SK TLGQ FLKL+ TQ+++QDP PM+ +E +AQ+A FS + +M + L Sbjct: 23 KKEDTARGSKDTLGQSDFLKLMTTQLQNQDPFAPMENAEFIAQMAQFSTVTGITEMGTEL 82 Query: 71 Q---ELLKSNNLAQASSYIGK------NITNAD--GSISGVVNAIQVSSTGLTAITVDN 118 + E L +A A++ +G N AD G I G++ S++G+T +T N Sbjct: 83 KAIAEQLGEFRIATAANLLGSSVMVPGNYARADDNGEIHGMIEL--PSASGITNLTFSN 139 >gi|325288802|ref|YP_004264983.1| flagellar hook capping protein [Syntrophobotulus glycolicus DSM 8271] gi|324964203|gb|ADY54982.1| flagellar hook capping protein [Syntrophobotulus glycolicus DSM 8271] Length = 144 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/122 (33%), Positives = 67/122 (54%), Gaps = 9/122 (7%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS---TLQEL 73 S + K LG++ FL+LL+ Q+K+QDP PM ++ V+Q+A FS +EQ + TL L Sbjct: 23 STASKDLGKNDFLQLLVAQLKYQDPMSPMDNTQFVSQMAQFSALEQMTNVADAIVTLTSL 82 Query: 74 LKSNNLAQASSYIGKNITNADGS-----ISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128 + L Q S+ IGK GS +G VN+I++ L + VD+ + + ++ Sbjct: 83 YSQSLLYQGSAMIGKTAAYQAGSEGQELTTGKVNSIRIQDNVL-QVQVDDQWVDLGNILQ 141 Query: 129 IS 130 +S Sbjct: 142 VS 143 >gi|291280097|ref|YP_003496932.1| flagellar basal-body rod modification protein FlgD [Deferribacter desulfuricans SSM1] gi|290754799|dbj|BAI81176.1| flagellar basal-body rod modification protein FlgD [Deferribacter desulfuricans SSM1] Length = 221 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/117 (34%), Positives = 56/117 (47%), Gaps = 13/117 (11%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN-- 77 KK L +D FL LL+TQ+K+QDP P+ SE +AQ FS +EQ + ++ +L+ + Sbjct: 23 KKELDKDDFLNLLVTQLKNQDPLNPLDNSEFIAQTTQFSSLEQLINISEKFDKLIDNEES 82 Query: 78 ---NLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 NL A S+I K I S N + D + P TT I I N Sbjct: 83 SNLNLFSAVSFIDKTINFYGNDFSADENG--------ALLRFDISGTPATTNIEIYN 131 >gi|218133667|ref|ZP_03462471.1| hypothetical protein BACPEC_01536 [Bacteroides pectinophilus ATCC 43243] gi|217991042|gb|EEC57048.1| hypothetical protein BACPEC_01536 [Bacteroides pectinophilus ATCC 43243] Length = 199 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/128 (32%), Positives = 68/128 (53%), Gaps = 15/128 (11%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 +NTE + L +DAFL+LL+ ++++QDP EP +E VAQLA F+Q+E+ Sbjct: 12 LNTEATSIYHSTTDKSYDNGLDKDAFLQLLVAEMQNQDPLEPSSNTEYVAQLATFTQVEE 71 Query: 63 SVQMNSTLQELLKSNNLAQASSYIGK----NITNADGS---ISGVVNAIQVSSTGLTAIT 115 +Q + S QA++ +GK N A G+ + GVV+ I V+S G T + Sbjct: 72 -------MQNMANSMAQNQANALVGKTVIMNTITASGTTSYVGGVVDRI-VNSNGKTYVG 123 Query: 116 VDNTEIPI 123 ++ + I Sbjct: 124 INGSLYDI 131 >gi|188586024|ref|YP_001917569.1| flagellar hook capping protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350711|gb|ACB84981.1| flagellar hook capping protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 145 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 64/122 (52%), Gaps = 11/122 (9%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 QQ + +++ LGQD F+K+L TQ++HQDP +PM E + Q+ F+Q++Q L Sbjct: 19 QQNLPQLENQDDLGQDEFIKILTTQLQHQDPLDPMDDREFIVQMTSFNQLDQ-------L 71 Query: 71 QELLKSNNLAQASSYIGKNIT--NADGS-ISGVVNAIQVSSTGLTAITVDNTEIPITTGI 127 Q L ++ + + +G+++ N DG I G V AI+ G +D ++ + Sbjct: 72 QSLNETQEQSSMLNLLGRHVVAENEDGEIIEGTVTAIR-DFNGSPGFEIDGKKVDFEDVV 130 Query: 128 RI 129 I Sbjct: 131 EI 132 >gi|269796391|ref|YP_003315846.1| flagellar hook capping protein [Sanguibacter keddieii DSM 10542] gi|269098576|gb|ACZ23012.1| flagellar hook capping protein [Sanguibacter keddieii DSM 10542] Length = 186 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 34/110 (30%), Positives = 61/110 (55%), Gaps = 4/110 (3%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 S +KK+L + F+ LL+ Q+K+QDP+ PM +E +AQ + ME+ M T+ E Sbjct: 30 STAKKSLDNETFMTLLVAQLKYQDPSSPMDTTEMMAQTTQLASMEKLTTMTDTIAESFAL 89 Query: 77 NNLAQASSYIGKNI--TNADGSI-SGVVNAIQVSSTGLTAITVDNTEIPI 123 A++ +GK + T ADG++ +GV ++ + + + VD E+ + Sbjct: 90 QMRDAAATLLGKQVSYTEADGTVKTGVAQSVSYKYS-VPMVVVDGVEVTL 138 >gi|325982372|ref|YP_004294774.1| flagellar hook capping protein [Nitrosomonas sp. AL212] gi|325531891|gb|ADZ26612.1| flagellar hook capping protein [Nitrosomonas sp. AL212] Length = 222 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/87 (41%), Positives = 57/87 (65%), Gaps = 11/87 (12%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA-- 82 QD FLKLLITQ+K+QDP +P+ +E +QLA S + ++NSTLQ+L+ S + ++ Sbjct: 30 QDRFLKLLITQMKNQDPLKPLDNAEVTSQLAQISTVTGIDKLNSTLQQLVSSADDGRSIE 89 Query: 83 -------SSYI-GKNIT-NADGSISGV 100 S+Y+ GK+IT +G+I+G+ Sbjct: 90 ALEMIGHSAYVPGKSITLEGEGAIAGI 116 >gi|303240281|ref|ZP_07326800.1| flagellar hook capping protein [Acetivibrio cellulolyticus CD2] gi|302592191|gb|EFL61920.1| flagellar hook capping protein [Acetivibrio cellulolyticus CD2] Length = 297 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/109 (34%), Positives = 62/109 (56%), Gaps = 16/109 (14%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82 LG+D F+ LL+TQ+++QDP P ++ +AQ+A FS +EQ +Q L S + QA Sbjct: 32 LGKDEFINLLVTQLQYQDPLNPQDDTQFIAQMAQFSALEQ-------MQNLNTSYSATQA 84 Query: 83 SSYIGK----NITNADGS----ISGVVNAIQVSSTGLTAITVDNTEIPI 123 IGK N+ + D S I+G V ++++ S G + V+ +IP+ Sbjct: 85 FGMIGKTVTANLKDGDSSKTNTITGEVTSVKMQS-GKAYVIVNGNDIPV 132 >gi|304316901|ref|YP_003852046.1| flagellar hook capping protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778403|gb|ADL68962.1| flagellar hook capping protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 135 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 33/93 (35%), Positives = 59/93 (63%), Gaps = 13/93 (13%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82 LG++ +L+LL+TQ+++QDP PM E +AQ+A FS +EQ + +N++ N +A Sbjct: 28 LGKNEYLQLLVTQLENQDPLNPMDDKEFIAQMAQFSALEQMLNLNNSF-------NAVKA 80 Query: 83 SSYIGKNIT---NADGS---ISGVVNAIQVSST 109 S +GK I+ +++GS I+G V+A++ + Sbjct: 81 YSLLGKTISANIDSNGSSSTITGKVDAVKFDGS 113 >gi|148266216|ref|YP_001232922.1| flagellar hook capping protein [Geobacter uraniireducens Rf4] gi|146399716|gb|ABQ28349.1| flagellar hook capping protein [Geobacter uraniireducens Rf4] Length = 221 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 49/71 (69%), Gaps = 3/71 (4%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL-KSNNLA- 80 + +D FLKL +TQ+++QDP P +S+ ++QLA +Q+EQ+ NS LQ++L ++NN Sbjct: 24 MNKDDFLKLFVTQLQNQDPMNPQDSSQFISQLAQLTQVEQAYNTNSNLQDMLNQANNTTT 83 Query: 81 -QASSYIGKNI 90 A S+IGK + Sbjct: 84 LSAVSFIGKEV 94 >gi|304310786|ref|YP_003810384.1| Flagellar basal-body rod modification protein FlgD [gamma proteobacterium HdN1] gi|301796519|emb|CBL44727.1| Flagellar basal-body rod modification protein FlgD [gamma proteobacterium HdN1] Length = 237 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 34/111 (30%), Positives = 62/111 (55%), Gaps = 11/111 (9%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE-- 72 S KS +D F++L++ Q+KHQ+P +P +E VAQLA FS +E +N ++++ Sbjct: 33 SPQKSAAATDKDMFMQLMLAQLKHQNPLDPQDGTEFVAQLAQFSSLEGITNLNDSVKDIT 92 Query: 73 -LLKSNNLAQASSYIGKNITNADGSIS--------GVVNAIQVSSTGLTAI 114 + +S+ QA++ +G+ + S++ GV+NA Q +S + I Sbjct: 93 SMYRSSQTLQATALVGREVLVDGDSVAFDGKNAALGVINAGQAASNAVMTI 143 >gi|148259133|ref|YP_001233260.1| flagellar hook capping protein [Acidiphilium cryptum JF-5] gi|326402286|ref|YP_004282367.1| putative flagellar hook capping protein [Acidiphilium multivorum AIU301] gi|146400814|gb|ABQ29341.1| flagellar hook capping protein [Acidiphilium cryptum JF-5] gi|325049147|dbj|BAJ79485.1| putative flagellar hook capping protein [Acidiphilium multivorum AIU301] Length = 253 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/67 (43%), Positives = 46/67 (68%), Gaps = 3/67 (4%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNLAQASS 84 FL +L TQ+++QDPT PM +S+ ++L FSQ+EQ + N +L +LL ++ +L QASS Sbjct: 66 FLTMLTTQLQNQDPTSPMSSSQFTSELVQFSQVEQQISTNQSLTQLLQLTQAGDLTQASS 125 Query: 85 YIGKNIT 91 +G +T Sbjct: 126 MLGSKVT 132 >gi|302037612|ref|YP_003797934.1| flagellar hook capping protein FlgD (fragment) [Candidatus Nitrospira defluvii] gi|300605676|emb|CBK42009.1| Flagellar hook capping protein FlgD (fragment) [Candidatus Nitrospira defluvii] Length = 101 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 44/68 (64%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 T+ P + K LG+D FLKLL+TQ++HQDP +PM+ + VAQ A FSQ+EQ Sbjct: 13 TQATPPDSSTPTTDGPKPLGKDDFLKLLVTQLQHQDPLKPMENEDFVAQTAQFSQLEQMS 72 Query: 65 QMNSTLQE 72 ++ S +++ Sbjct: 73 KLVSLMEK 80 >gi|302343733|ref|YP_003808262.1| flagellar hook capping protein [Desulfarculus baarsii DSM 2075] gi|301640346|gb|ADK85668.1| flagellar hook capping protein [Desulfarculus baarsii DSM 2075] Length = 282 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 47/72 (65%), Gaps = 3/72 (4%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ---ELLKSNNL 79 LGQDAFL + + Q+ +Q+P +PM +E AQLA FSQ+E+ Q+ +++ +L S + Sbjct: 28 LGQDAFLTMFMAQVTNQNPLDPMDNTEFTAQLATFSQLEKLTQIAESMEGISDLQTSMDK 87 Query: 80 AQASSYIGKNIT 91 + A Y+GK +T Sbjct: 88 SVALGYLGKEVT 99 >gi|192361923|ref|YP_001982401.1| flagellar basal-body rod modification protein FlgD [Cellvibrio japonicus Ueda107] gi|190688088|gb|ACE85766.1| flagellar basal-body rod modification protein FlgD [Cellvibrio japonicus Ueda107] Length = 231 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 1/74 (1%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77 ++ LGQ AFL+L+I Q+ +Q+P P +E VAQLA FS +E ++N + + SN Sbjct: 24 RNSNELGQAAFLELMIAQMNNQNPLSPQDNTEFVAQLAQFSSVEGLERLNKSFNSFM-SN 82 Query: 78 NLAQASSYIGKNIT 91 N QASS +G++++ Sbjct: 83 NALQASSLVGRSVS 96 >gi|86139469|ref|ZP_01058038.1| basal-body rod modification protein FlgD [Roseobacter sp. MED193] gi|85823972|gb|EAQ44178.1| basal-body rod modification protein FlgD [Roseobacter sp. MED193] Length = 231 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 41/71 (57%), Gaps = 3/71 (4%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ---ELLKSNNLAQA 82 D F+KLL Q K+QDPTEPM +E +QLA FS +EQ V N L E L N+A Sbjct: 31 DTFIKLLTAQAKYQDPTEPMDNTEYASQLAEFSMVEQQVLTNDNLGSALEQLGLGNMAAL 90 Query: 83 SSYIGKNITNA 93 + ++G + A Sbjct: 91 TGWVGMEVRAA 101 >gi|284041519|ref|YP_003391859.1| flagellar hook capping protein [Conexibacter woesei DSM 14684] gi|283945740|gb|ADB48484.1| flagellar hook capping protein [Conexibacter woesei DSM 14684] Length = 152 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/111 (33%), Positives = 61/111 (54%), Gaps = 11/111 (9%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 ++ + LG+D FLKLLI Q+++QDP P +E + Q+ FS +EQ + T Q + Sbjct: 20 TRRESFLGKDDFLKLLIGQMQNQDPLNPTDGAEYMGQMTQFSILEQITNLGQTTQAAASN 79 Query: 77 NNLAQASSYIGKNIT-----NADG-----SISGVVNAIQVSSTGLTAITVD 117 + AQA IG+ ++ N DG S +G V ++ +S+G +T+D Sbjct: 80 DYDAQAIRLIGQTVSYLARVNEDGRSVLRSFTGRVESVTFTSSG-PQLTID 129 >gi|150390480|ref|YP_001320529.1| flagellar hook capping protein [Alkaliphilus metalliredigens QYMF] gi|149950342|gb|ABR48870.1| flagellar hook capping protein [Alkaliphilus metalliredigens QYMF] Length = 134 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/98 (37%), Positives = 57/98 (58%), Gaps = 9/98 (9%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL---QE 72 K K+ L +DAFLKLL+TQ+ +QDP PM+ E ++Q+A FS +EQ +N L +E Sbjct: 19 KKKNTSDLDKDAFLKLLVTQMSNQDPLNPMEDREFISQMAQFSSLEQMQNLNDGLKDTKE 78 Query: 73 LLK------SNNLAQASSYIGKNITNADGSISGVVNAI 104 LL +NNL ++ + I + + I+ V+N I Sbjct: 79 LLADHITQMNNNLVKSQTTIADQLDLMNIQINKVLNHI 116 >gi|317051682|ref|YP_004112798.1| flagellar hook capping protein [Desulfurispirillum indicum S5] gi|316946766|gb|ADU66242.1| flagellar hook capping protein [Desulfurispirillum indicum S5] Length = 248 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 5/72 (6%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL----K 75 KK + +DAFL L+ITQ+++QDPT P S+ +AQ A FSQ+EQ M + + L+ + Sbjct: 27 KKEMDKDAFLHLMITQLRNQDPTNPQDNSQMIAQTAQFSQLEQLTNMTAAVDRLVAMQQQ 86 Query: 76 SNNLAQASSYIG 87 + N A++YIG Sbjct: 87 TMNF-NAAAYIG 97 >gi|89895711|ref|YP_519198.1| hypothetical protein DSY2965 [Desulfitobacterium hafniense Y51] gi|89335159|dbj|BAE84754.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 193 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/97 (34%), Positives = 59/97 (60%), Gaps = 10/97 (10%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE------ 72 +K+ LG+D FLKLL+ ++ +QDP PM + + Q+A FS +EQ M+ +++ Sbjct: 31 TKEVLGKDDFLKLLVAELTNQDPLSPMDNKDMITQMAQFSSLEQMNNMSKSMENLVGAFG 90 Query: 73 -LLKSNNLAQASSYIGKNIT--NADGSI-SGVVNAIQ 105 L +++ L+Q ++ IGK + N +G I G+V ++Q Sbjct: 91 ALFQNSLLSQGAAMIGKYVAGLNTEGKIVEGLVQSVQ 127 >gi|323700470|ref|ZP_08112382.1| flagellar hook capping protein [Desulfovibrio sp. ND132] gi|323460402|gb|EGB16267.1| flagellar hook capping protein [Desulfovibrio desulfuricans ND132] Length = 225 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 46/73 (63%), Gaps = 4/73 (5%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82 D F+ LL T++++QDPTEP+ ++ V Q+ +SQ+EQ +MN TL + L + ++ Sbjct: 32 DDFITLLCTELEYQDPTEPVDNTQMVDQMTQYSQLEQLTEMNEKMDTLTDALDAQGISSG 91 Query: 83 SSYIGKNITNADG 95 Y+GK + ADG Sbjct: 92 LDYLGKEV-EADG 103 >gi|291529035|emb|CBK94621.1| Flagellar hook capping protein [Eubacterium rectale M104/1] Length = 237 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/107 (34%), Positives = 56/107 (52%), Gaps = 7/107 (6%) Query: 5 TEVNPTQQEFSKSK--SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 T PTQ + S S LG D FLKLL ++++QDP EP ++ VAQ+A FSQ+E Sbjct: 15 TNTTPTQNRKTSSAKASGSNLGYDDFLKLLSAEMQYQDPLEPTSNTDYVAQMATFSQLEA 74 Query: 63 SVQMNSTLQELLKSNNLAQASSYIGKNI-----TNADGSISGVVNAI 104 ++ M ++ + A S +GK + +A G SG V+ + Sbjct: 75 TLSMKESMASSNDQTTKSAALSLVGKEVIVTDKDSASGYYSGKVDYV 121 >gi|291524894|emb|CBK90481.1| Flagellar hook capping protein [Eubacterium rectale DSM 17629] Length = 237 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/107 (34%), Positives = 56/107 (52%), Gaps = 7/107 (6%) Query: 5 TEVNPTQQEFSKSK--SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 T PTQ + S S LG D FLKLL ++++QDP EP ++ VAQ+A FSQ+E Sbjct: 15 TNTTPTQNRKTSSAKASGSNLGYDDFLKLLSAEMQYQDPLEPTSNTDYVAQMATFSQLEA 74 Query: 63 SVQMNSTLQELLKSNNLAQASSYIGKNI-----TNADGSISGVVNAI 104 ++ M ++ + A S +GK + +A G SG V+ + Sbjct: 75 TLSMKESMASSNDQTTKSAALSLVGKEVIVTDKDSASGYYSGKVDYV 121 >gi|298530011|ref|ZP_07017413.1| flagellar hook capping protein [Desulfonatronospira thiodismutans ASO3-1] gi|298509385|gb|EFI33289.1| flagellar hook capping protein [Desulfonatronospira thiodismutans ASO3-1] Length = 241 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/90 (42%), Positives = 49/90 (54%), Gaps = 16/90 (17%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ---------SVQM 66 + + LG+ FLKLLITQ+++QDP +PM E VAQLA FS +EQ S+ Sbjct: 24 RDEDPAELGKMDFLKLLITQLENQDPLDPMDDKEFVAQLAQFSSLEQLTNISEGMESMNE 83 Query: 67 NSTLQELLKSNNLAQASSYIGKNITNADGS 96 N QE+L A +IGK I ADG Sbjct: 84 NQARQEMLG------AVGFIGKEIR-ADGD 106 >gi|85859174|ref|YP_461376.1| flagellar hook capping protein [Syntrophus aciditrophicus SB] gi|85722265|gb|ABC77208.1| flagellar hook capping protein [Syntrophus aciditrophicus SB] Length = 220 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 49/78 (62%), Gaps = 3/78 (3%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK- 75 + + K G+D FLK+LI Q+++Q+P P+ ++ AQLA FS +EQ MNSTL+ L Sbjct: 18 TSTNKLTGKDEFLKMLIAQLQNQNPLNPLDGTDFAAQLAQFSSLEQLTNMNSTLESLSAL 77 Query: 76 --SNNLAQASSYIGKNIT 91 + N A++ IG+ ++ Sbjct: 78 QTTQNGIMAANLIGRQVS 95 >gi|238926248|ref|ZP_04658008.1| possible flagellar basal body rod modification protein [Selenomonas flueggei ATCC 43531] gi|238885928|gb|EEQ49566.1| possible flagellar basal body rod modification protein [Selenomonas flueggei ATCC 43531] Length = 168 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/86 (39%), Positives = 52/86 (60%), Gaps = 7/86 (8%) Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 Q + SK LG+DAFL+LL+TQ+++QDP P +E ++QLA FS +EQ ++ L+ Sbjct: 22 QAKAASKDNSALGKDAFLQLLVTQMRYQDPLNPQDNAEYLSQLAQFSALEQMTNVSKGLE 81 Query: 72 ELLK-------SNNLAQASSYIGKNI 90 ++ K S + Q SS IG+ I Sbjct: 82 KVSKIVDNIDSSVLIGQLSSMIGQPI 107 >gi|326204619|ref|ZP_08194475.1| flagellar hook capping protein [Clostridium papyrosolvens DSM 2782] gi|325985186|gb|EGD46026.1| flagellar hook capping protein [Clostridium papyrosolvens DSM 2782] Length = 286 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 31/81 (38%), Positives = 50/81 (61%), Gaps = 7/81 (8%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 +Q + K+ LG++ FL LL+TQ+++QDP +P+ E +AQ+A FS +EQ MN ++ Sbjct: 23 KQAAAARKTGGELGKNDFLNLLVTQLRYQDPLQPVDDKEFIAQMAQFSSLEQMQNMNGSM 82 Query: 71 QELLKSNNLAQASSYIGKNIT 91 + +QA + IGK IT Sbjct: 83 TK-------SQAFTLIGKVIT 96 >gi|295706278|ref|YP_003599353.1| flagellar hook assembly protein [Bacillus megaterium DSM 319] gi|294803937|gb|ADF41003.1| flagellar hook assembly protein [Bacillus megaterium DSM 319] Length = 142 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 30/76 (39%), Positives = 48/76 (63%), Gaps = 3/76 (3%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL- 74 K +LG+D FLKLLI Q+++QDP PM+ + +AQ+A FS +EQ M+++L L Sbjct: 19 KQTGNSSLGKDDFLKLLIAQLQNQDPMNPMQDKDFIAQMAQFSSLEQMTNMSTSLNTFLT 78 Query: 75 --KSNNLAQASSYIGK 88 +++ + + S IGK Sbjct: 79 QSQASPILKGSELIGK 94 >gi|167630296|ref|YP_001680795.1| flagellar hook capping protein, putative [Heliobacterium modesticaldum Ice1] gi|167593036|gb|ABZ84784.1| flagellar hook capping protein, putative [Heliobacterium modesticaldum Ice1] Length = 188 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 25/45 (55%), Positives = 35/45 (77%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 KS LG+D FLKLL+TQ+++QDP +PM+ E +AQ+A FS +EQ Sbjct: 22 KSNSQLGKDDFLKLLVTQLRYQDPMKPMEDKEFIAQMAQFSSLEQ 66 >gi|152965623|ref|YP_001361407.1| flagellar hook capping protein [Kineococcus radiotolerans SRS30216] gi|151360140|gb|ABS03143.1| flagellar hook capping protein [Kineococcus radiotolerans SRS30216] Length = 175 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 36/98 (36%), Positives = 58/98 (59%), Gaps = 3/98 (3%) Query: 7 VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66 N T S + +K +D FLKLL+ Q+K+QDP++P ++ +AQ A FS +E ++ Sbjct: 31 ANKTDTSASAAVAKTKTDKDTFLKLLVAQLKYQDPSKPADTTQFMAQTAQFSALETMQEV 90 Query: 67 NSTLQELLKSNNLAQASSYIGK--NITNADGSI-SGVV 101 ++ +L + N QAS+ IG+ + T DG+ SGVV Sbjct: 91 AASSGSMLAAQNKLQASTLIGQIVSYTGEDGTAKSGVV 128 >gi|326791536|ref|YP_004309357.1| flagellar hook capping protein [Clostridium lentocellum DSM 5427] gi|326542300|gb|ADZ84159.1| flagellar hook capping protein [Clostridium lentocellum DSM 5427] Length = 270 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 55/92 (59%), Gaps = 1/92 (1%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77 K + L +DAF+ LL+TQ+K+QDP +P+ SE +AQLA F+ +EQ + + Q+ L + Sbjct: 23 KEQSELDKDAFINLLVTQMKYQDPLDPVDNSEMLAQLAQFTALEQMMNVAQASQKQLANG 82 Query: 78 NLAQASSYIGKNI-TNADGSISGVVNAIQVSS 108 + + Y+ K+ T + G V+ ++VS Sbjct: 83 MIGKYVEYLYKDSETGTSEYLVGKVDYVKVSG 114 >gi|320530203|ref|ZP_08031273.1| flagellar hook capping protein [Selenomonas artemidis F0399] gi|320137636|gb|EFW29548.1| flagellar hook capping protein [Selenomonas artemidis F0399] Length = 176 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 31/77 (40%), Positives = 49/77 (63%) Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 QE + +K LG+DAFL+LL+TQ+K+QDP +P S+ ++QLA FS +EQ + L Sbjct: 22 QEKAANKKNDALGKDAFLQLLVTQMKYQDPLDPQDNSQYLSQLAQFSALEQMTNVAKGLS 81 Query: 72 ELLKSNNLAQASSYIGK 88 ++ K + +S IG+ Sbjct: 82 DVQKVVDNINSSVLIGQ 98 >gi|313894826|ref|ZP_07828386.1| flagellar hook capping protein [Selenomonas sp. oral taxon 137 str. F0430] gi|312976507|gb|EFR41962.1| flagellar hook capping protein [Selenomonas sp. oral taxon 137 str. F0430] Length = 180 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 31/77 (40%), Positives = 49/77 (63%) Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 QE + +K LG+DAFL+LL+TQ+K+QDP +P S+ ++QLA FS +EQ + L Sbjct: 26 QEKAANKKNDALGKDAFLQLLVTQMKYQDPLDPQDNSQYLSQLAQFSALEQMTNVAKGLS 85 Query: 72 ELLKSNNLAQASSYIGK 88 ++ K + +S IG+ Sbjct: 86 DVQKVVDNINSSVLIGQ 102 >gi|83591886|ref|YP_425638.1| flagellar hook capping protein [Rhodospirillum rubrum ATCC 11170] gi|83574800|gb|ABC21351.1| Flagellar hook capping protein [Rhodospirillum rubrum ATCC 11170] Length = 245 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/109 (33%), Positives = 62/109 (56%), Gaps = 5/109 (4%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77 + K T + FL LL +Q+K+QDP PM ++E QL F+Q+EQ + N +++LL + Sbjct: 24 RGKLTSDMNTFLTLLTSQLKNQDPLSPMDSTEFTNQLVQFAQVEQQINTNDNMEKLLAVS 83 Query: 78 NLAQAS---SYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPI 123 +QA+ Y+GK + A+ ++ + + V + GLTA DN I + Sbjct: 84 GNSQAAMAVGYLGKYV-EAESTVVALQDGQAVFTYGLTA-AADNVTIAL 130 >gi|315497295|ref|YP_004086099.1| flagellar hook capping protein [Asticcacaulis excentricus CB 48] gi|315415307|gb|ADU11948.1| flagellar hook capping protein [Asticcacaulis excentricus CB 48] Length = 219 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 42/66 (63%), Gaps = 2/66 (3%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL--KSNNLAQASSY 85 FL LL Q+K+QDP PM ++E +QL +S +EQ ++ N L L+ +L+ A +Y Sbjct: 31 FLSLLTAQLKNQDPLSPMDSTEWTSQLVQYSSVEQQIKTNDYLSTLVAQSGGSLSSAVNY 90 Query: 86 IGKNIT 91 IGK+IT Sbjct: 91 IGKSIT 96 >gi|294500932|ref|YP_003564632.1| flagellar hook assembly protein [Bacillus megaterium QM B1551] gi|294350869|gb|ADE71198.1| flagellar hook assembly protein [Bacillus megaterium QM B1551] Length = 142 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 30/76 (39%), Positives = 48/76 (63%), Gaps = 3/76 (3%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL- 74 K +LG+D FLKLLI Q+++QDP PM+ + +AQ+A FS +EQ M+++L L Sbjct: 19 KQTGNSSLGKDDFLKLLIAQLQNQDPMNPMQDKDFIAQMAQFSSLEQMTNMSTSLNTFLT 78 Query: 75 --KSNNLAQASSYIGK 88 +++ + + S IGK Sbjct: 79 QSQASPILKGSELIGK 94 >gi|332799180|ref|YP_004460679.1| flagellar hook capping protein [Tepidanaerobacter sp. Re1] gi|332696915|gb|AEE91372.1| flagellar hook capping protein [Tepidanaerobacter sp. Re1] Length = 128 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 25/45 (55%), Positives = 34/45 (75%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67 L +D FLKLL+TQ+++QDP EPM +E +AQLA FS +EQ +N Sbjct: 23 LDKDDFLKLLVTQLRYQDPLEPMDNNEYIAQLAQFSSLEQMQNLN 67 >gi|120554032|ref|YP_958383.1| flagellar hook capping protein [Marinobacter aquaeolei VT8] gi|120323881|gb|ABM18196.1| flagellar hook capping protein [Marinobacter aquaeolei VT8] Length = 225 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 67/116 (57%), Gaps = 15/116 (12%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL- 73 K+ LG+DAF++L++ Q+K+Q+P EP + +AQLA FS +E+ ++ ++ ++ Sbjct: 22 GKTPGGNELGKDAFMELMLAQLKNQNPLEPQDNGDFIAQLAQFSSLEEMQNLSGSVDDVV 81 Query: 74 --LKSNNLAQASSYIGK--------NITNADGSISGVVNAIQV-SSTGLTAITVDN 118 +S+ QAS+ +GK I ++G I+G IQV +STG ++V N Sbjct: 82 GQFRSSQALQASAMVGKTVLAPSSVGILGSEGEITGT---IQVPASTGGLRLSVMN 134 >gi|283782099|ref|YP_003372854.1| flagellar hook capping protein [Pirellula staleyi DSM 6068] gi|283440552|gb|ADB18994.1| flagellar hook capping protein [Pirellula staleyi DSM 6068] Length = 145 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 55/94 (58%), Gaps = 3/94 (3%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75 K KS + LG D FL+L+IT++ +QDP PM ++ V Q+ ++ + +++ TL +L Sbjct: 21 KPKSLEDLGIDEFLQLMITELTNQDPLNPMDNAQMVEQIGQIREIASNDKLSRTLDSVLT 80 Query: 76 SNNLAQASSYIGKNITNAD---GSISGVVNAIQV 106 +L AS IG+ +T D ++ G+V+ + + Sbjct: 81 GQSLTTASGLIGREVTALDLNNENVEGIVDRVSI 114 >gi|311030123|ref|ZP_07708213.1| hypothetical protein Bm3-1_06191 [Bacillus sp. m3-13] Length = 217 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 3/78 (3%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 S +G+D FL+LLI Q+++QDP PM+ E +AQ+A FS +EQ +N +++ + + Sbjct: 19 SNQNNVMGKDDFLRLLIAQLQNQDPLNPMEDREFIAQMANFSSLEQMANLNKSMEGFIDT 78 Query: 77 NNLAQASS---YIGKNIT 91 N S Y+G +T Sbjct: 79 QNKMNVLSLQQYLGSELT 96 >gi|307823530|ref|ZP_07653759.1| flagellar hook capping protein [Methylobacter tundripaludum SV96] gi|307735515|gb|EFO06363.1| flagellar hook capping protein [Methylobacter tundripaludum SV96] Length = 231 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 56/104 (53%), Gaps = 11/104 (10%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69 T+ + + + K +LGQD FLKL+ TQ+ HQDPT+PM+ + + Q+A F + + + Sbjct: 17 TKNDSAATTKKTSLGQDDFLKLMTTQMTHQDPTKPMENGQFITQIAQFGTVSGIQDLQKS 76 Query: 70 LQELLKSNNLA---QASSYIG--------KNITNADGSISGVVN 102 + S N + QA+S +G K + A G I+G +N Sbjct: 77 FGDFAGSINSSQALQATSLVGRYVSAPGTKGVLEAGGDITGNIN 120 >gi|126738592|ref|ZP_01754297.1| basal-body rod modification protein FlgD [Roseobacter sp. SK209-2-6] gi|126720391|gb|EBA17097.1| basal-body rod modification protein FlgD [Roseobacter sp. SK209-2-6] Length = 228 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 3/68 (4%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82 D F+KLL Q ++QDP EPM +E +QLA FS +EQ V N ST+ E L N+A Sbjct: 33 DTFIKLLTAQAQYQDPLEPMDNTEYASQLAEFSMVEQQVLTNTNLSTVHEQLGLGNMASL 92 Query: 83 SSYIGKNI 90 + ++G + Sbjct: 93 TGWVGMEV 100 >gi|83646775|ref|YP_435210.1| flagellar hook capping protein [Hahella chejuensis KCTC 2396] gi|83634818|gb|ABC30785.1| Flagellar hook capping protein [Hahella chejuensis KCTC 2396] Length = 136 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 44/71 (61%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79 + T+G + FL++ +TQ+ QDP EP+ E +AQLA FS +E + + N ++ LL ++ Sbjct: 18 QNTVGIEDFLQIFLTQLTFQDPLEPVDNREFIAQLAQFSSLETATRTNENIEGLLDVQSV 77 Query: 80 AQASSYIGKNI 90 AQ IGK + Sbjct: 78 AQTVGLIGKTV 88 >gi|94500240|ref|ZP_01306773.1| Flagellar hook capping protein [Oceanobacter sp. RED65] gi|94427539|gb|EAT12516.1| Flagellar hook capping protein [Oceanobacter sp. RED65] Length = 262 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 50/71 (70%), Gaps = 3/71 (4%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNL 79 LG++ FLKLL+TQ+ +Q+P +P + SE VAQLA FS +E +N+T+ + L+S+ Sbjct: 30 LGRNEFLKLLVTQMNNQNPLKPQENSEFVAQLAQFSSVEGLENLNTTVDSMSDGLRSSQA 89 Query: 80 AQASSYIGKNI 90 QASS +G+++ Sbjct: 90 LQASSLVGQSV 100 >gi|229826309|ref|ZP_04452378.1| hypothetical protein GCWU000182_01681 [Abiotrophia defectiva ATCC 49176] gi|229789179|gb|EEP25293.1| hypothetical protein GCWU000182_01681 [Abiotrophia defectiva ATCC 49176] Length = 317 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 33/91 (36%), Positives = 55/91 (60%), Gaps = 14/91 (15%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82 LG+D+FLKLL Q+++QDP +P +E V+QLA +S +EQ +N+T+ +QA Sbjct: 44 LGKDSFLKLLCAQMENQDPMQPQSNTEWVSQLATYSSLEQMQNLNATIAN-------SQA 96 Query: 83 SSYIGKNIT----NADG---SISGVVNAIQV 106 IG+ + ++DG ++SG V+ + V Sbjct: 97 YGLIGQEVVMAAKDSDGHETTVSGKVDFVSV 127 >gi|83816116|ref|YP_446707.1| basal-body rod modification protein FlgD [Salinibacter ruber DSM 13855] gi|294508643|ref|YP_003572702.1| Basal-body rod modification protein flgD [Salinibacter ruber M8] gi|83757510|gb|ABC45623.1| basal-body rod modification protein FlgD [Salinibacter ruber DSM 13855] gi|294344972|emb|CBH25750.1| Basal-body rod modification protein flgD [Salinibacter ruber M8] Length = 260 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 37/102 (36%), Positives = 56/102 (54%), Gaps = 14/102 (13%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN-LAQ 81 LG++ FLKLL TQ+++QDP+ PMK + AQLA FS +EQ ++ ++E KS+ LAQ Sbjct: 61 LGKNDFLKLLTTQLQNQDPSNPMKGKDFAAQLAQFSSVEQLTNISGQIEEQGKSDGALAQ 120 Query: 82 ------ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVD 117 A+ IG+ + + N +Q + G VD Sbjct: 121 SINDSMATDLIGRTVKTSG-------NTLQWTGEGEATFGVD 155 >gi|163738073|ref|ZP_02145489.1| flagellar hook capping protein [Phaeobacter gallaeciensis BS107] gi|161388689|gb|EDQ13042.1| flagellar hook capping protein [Phaeobacter gallaeciensis BS107] Length = 230 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 36/97 (37%), Positives = 53/97 (54%), Gaps = 7/97 (7%) Query: 18 KSKKTLG----QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73 + KKT G + FLK+L Q ++QDP EP+ ++E AQLA FS +EQ VQ N L+ + Sbjct: 23 EPKKTTGIASDFETFLKMLTAQARYQDPLEPIDSTEYSAQLAQFSMVEQQVQGNEVLEGI 82 Query: 74 ---LKSNNLAQASSYIGKNITNADGSISGVVNAIQVS 107 L N+A S ++G +A + N + VS Sbjct: 83 QAQLGLANMAAMSGWVGMETRSAAPAYFDGTNPVTVS 119 >gi|148358805|ref|YP_001250012.1| flagellar basal body rod modification protein FlgD [Legionella pneumophila str. Corby] gi|296106850|ref|YP_003618550.1| flagellar basal-body rod modification protein FlgD [Legionella pneumophila 2300/99 Alcoy] gi|148280578|gb|ABQ54666.1| flagellar basal body rod modification protein FlgD [Legionella pneumophila str. Corby] gi|295648751|gb|ADG24598.1| flagellar basal-body rod modification protein FlgD [Legionella pneumophila 2300/99 Alcoy] Length = 225 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 49/77 (63%), Gaps = 3/77 (3%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--- 73 S ++ LGQ FL+L++ Q+++QDP +P E ++QLA FS + +M +LQ+L Sbjct: 22 SDKRQNLGQQDFLRLMVAQVQNQDPLQPQANGEFLSQLAQFSTNDGITKMQESLQQLASS 81 Query: 74 LKSNNLAQASSYIGKNI 90 L+SN QAS+ +G+ + Sbjct: 82 LQSNQALQASALVGRKV 98 >gi|163742531|ref|ZP_02149917.1| basal-body rod modification protein FlgD [Phaeobacter gallaeciensis 2.10] gi|161384116|gb|EDQ08499.1| basal-body rod modification protein FlgD [Phaeobacter gallaeciensis 2.10] Length = 230 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 36/97 (37%), Positives = 53/97 (54%), Gaps = 7/97 (7%) Query: 18 KSKKTLG----QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73 + KKT G + FLK+L Q ++QDP EP+ ++E AQLA FS +EQ VQ N L+ + Sbjct: 23 EPKKTTGIASDFETFLKMLTAQARYQDPLEPIDSTEYSAQLAQFSMVEQQVQGNEVLEGI 82 Query: 74 ---LKSNNLAQASSYIGKNITNADGSISGVVNAIQVS 107 L N+A S ++G +A + N + VS Sbjct: 83 QAQLGLANMAAMSGWVGMETRSAAPAYFDGTNPVTVS 119 >gi|54297181|ref|YP_123550.1| flagellar basal body rod modification protein [Legionella pneumophila str. Paris] gi|53750966|emb|CAH12377.1| Flagellar basal-body rod modification protein FlgD [Legionella pneumophila str. Paris] Length = 225 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 49/77 (63%), Gaps = 3/77 (3%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--- 73 S ++ LGQ FL+L++ Q+++QDP +P E ++QLA FS + +M +LQ+L Sbjct: 22 SDKRQNLGQQDFLRLMVAQVQNQDPLQPQANGEFLSQLAQFSTNDGITKMQESLQQLASS 81 Query: 74 LKSNNLAQASSYIGKNI 90 L+SN QAS+ +G+ + Sbjct: 82 LQSNQALQASALVGRKV 98 >gi|254785370|ref|YP_003072799.1| flagellar basal-body rod modification protein FlgD [Teredinibacter turnerae T7901] gi|237687333|gb|ACR14597.1| flagellar basal-body rod modification protein FlgD [Teredinibacter turnerae T7901] Length = 238 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 47/72 (65%), Gaps = 3/72 (4%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNL 79 LGQ AFL+L+ITQ+++QDP P + +E +AQLA FS +E ++N+ +N Sbjct: 30 LGQSAFLELMITQMENQDPLSPQENTEFIAQLAQFSSVEALDKLNNNFDSFTNNFMANQA 89 Query: 80 AQASSYIGKNIT 91 QAS+ +G+++T Sbjct: 90 LQASTLVGRSVT 101 >gi|54294162|ref|YP_126577.1| flagellar basal body rod modification protein [Legionella pneumophila str. Lens] gi|53753994|emb|CAH15465.1| Flagellar basal-body rod modification protein FlgD [Legionella pneumophila str. Lens] gi|307609976|emb|CBW99505.1| flagellar basal-body rod modification protein FlgD [Legionella pneumophila 130b] Length = 225 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 49/77 (63%), Gaps = 3/77 (3%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--- 73 S ++ LGQ FL+L++ Q+++QDP +P E ++QLA FS + +M +LQ+L Sbjct: 22 SDKRQNLGQQDFLRLMVAQVQNQDPLQPQANGEFLSQLAQFSTNDGITKMQESLQQLASS 81 Query: 74 LKSNNLAQASSYIGKNI 90 L+SN QAS+ +G+ + Sbjct: 82 LQSNQALQASALVGRKV 98 >gi|327480019|gb|AEA83329.1| flagellar basal body rod modification protein [Pseudomonas stutzeri DSM 4166] Length = 227 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 54/85 (63%), Gaps = 5/85 (5%) Query: 11 QQEFSKSKSKKT--LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 Q +F + + K LG++ FL+LL+ Q+ +Q+P EP + E + QLA FS +E ++NS Sbjct: 16 QYQFGEKREAKGNDLGKNEFLELLVAQLNNQNPLEPQENGEFIGQLAQFSTVEGVEKLNS 75 Query: 69 TLQELL---KSNNLAQASSYIGKNI 90 ++Q +L +S+ QASS +G+ + Sbjct: 76 SMQTILSGYQSSQALQASSLVGRKV 100 >gi|52841450|ref|YP_095249.1| flagellar basal body rod modification protein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628561|gb|AAU27302.1| flagellar basal body rod modification protein FlgD [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 225 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 49/77 (63%), Gaps = 3/77 (3%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--- 73 S ++ LGQ FL+L++ Q+++QDP +P E ++QLA FS + +M +LQ+L Sbjct: 22 SGKRQNLGQQDFLRLMVAQVQNQDPLQPQANGEFLSQLAQFSTNDGITKMQESLQQLASS 81 Query: 74 LKSNNLAQASSYIGKNI 90 L+SN QAS+ +G+ + Sbjct: 82 LQSNQALQASALVGRKV 98 >gi|222100887|ref|YP_002535455.1| Basal-body rod modification protein FlgD [Thermotoga neapolitana DSM 4359] gi|221573277|gb|ACM24089.1| Basal-body rod modification protein FlgD [Thermotoga neapolitana DSM 4359] Length = 223 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 28/75 (37%), Positives = 50/75 (66%), Gaps = 3/75 (4%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK--- 75 + KTL +DAFL+LL+ +++ QDP EPM+ + ++QL+ + +EQ + S +++ ++ Sbjct: 22 ASKTLDKDAFLRLLLQELEMQDPLEPMETKDMISQLSQLTSLEQITNLTSAVKDFVEAQT 81 Query: 76 SNNLAQASSYIGKNI 90 S N AQ +S IGK + Sbjct: 82 SVNPAQLASLIGKYV 96 >gi|149375035|ref|ZP_01892808.1| Flagellar hook capping protein [Marinobacter algicola DG893] gi|149360924|gb|EDM49375.1| Flagellar hook capping protein [Marinobacter algicola DG893] Length = 224 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 68/132 (51%), Gaps = 32/132 (24%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 QQE + S+ LG++ F++L+I Q+K+Q+P EP E ++QLA FS +E+ ++ ++ Sbjct: 19 QQEQTAKGSE--LGKNEFMELMIAQLKNQNPLEPQDNGEFISQLAQFSSLEEMQSLSGSV 76 Query: 71 QEL---LKSNNLAQASSYIGK--------NITNADGSISGVVNAIQVSSTGLTAITVDNT 119 ++ +S QAS+ +G+ + ADG ISG N Sbjct: 77 DDMASQFRSTQALQASAMVGRTVLAPSSIGVLGADGEISG------------------NV 118 Query: 120 EIPITT-GIRIS 130 +P TT G+RIS Sbjct: 119 SVPATTSGLRIS 130 >gi|227876746|ref|ZP_03994855.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243] gi|227842643|gb|EEJ52843.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243] Length = 336 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 63/110 (57%), Gaps = 11/110 (10%) Query: 12 QEFSKSKSKK----TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67 Q K+++KK LG+D F+KLL+ +K+QDPT+PM ++ + Q + + MEQ +QM Sbjct: 70 QRTDKAQTKKEDPTKLGKDDFMKLLLATLKYQDPTQPMDTAQLLEQTSTMTNMEQMIQMT 129 Query: 68 STLQELLKSNNLAQASSYIGK----NITNADG---SISGVVNAIQVSSTG 110 + ++ Q +S +G+ ++ + +G + +G V+A++ + G Sbjct: 130 EASKRAYEAQQRVQGASMVGRTAVYDLIDDEGNAKTTAGKVDAVEFLAEG 179 >gi|226225730|ref|YP_002759836.1| putative flagellar basal-body rod modification protein FlgD [Gemmatimonas aurantiaca T-27] gi|226088921|dbj|BAH37366.1| putative flagellar basal-body rod modification protein FlgD [Gemmatimonas aurantiaca T-27] Length = 267 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 24/48 (50%), Positives = 35/48 (72%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 +G+D FLK+L+ Q+K+QDP PM + AQLA FS +EQ ++MN +L Sbjct: 50 MGRDEFLKMLVAQLKNQDPLNPMDGKDMAAQLAQFSTVEQLLKMNESL 97 >gi|83589629|ref|YP_429638.1| flagellar hook capping protein [Moorella thermoacetica ATCC 39073] gi|83572543|gb|ABC19095.1| Flagellar hook capping protein [Moorella thermoacetica ATCC 39073] Length = 140 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 34/93 (36%), Positives = 54/93 (58%), Gaps = 6/93 (6%) Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA 80 K LG+D FLKLL Q+++QDP P+ ++ +AQ+A FS +EQ + + E L + Sbjct: 21 KGLGKDDFLKLLAAQLQNQDPLNPVSNTDFIAQMAQFSVLEQMNNLYESFNEAL----ML 76 Query: 81 QASSYIGKNITNA--DGSISGVVNAIQVSSTGL 111 QA IGK +T D +++G V+ + S G+ Sbjct: 77 QAVGLIGKEVTARINDQTLTGTVSKVNWSPEGI 109 >gi|330502733|ref|YP_004379602.1| flagellar basal body rod modification protein [Pseudomonas mendocina NK-01] gi|328917019|gb|AEB57850.1| flagellar basal body rod modification protein [Pseudomonas mendocina NK-01] Length = 221 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 50/77 (64%), Gaps = 3/77 (3%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL-- 74 +K K LG++ FL LL+ Q+ +Q+P EP E +AQLA FSQ+E ++N+++ +L Sbjct: 20 TKQNKDLGKNEFLNLLVAQLNNQNPLEPQGNGEFIAQLAQFSQVEGIEKLNTSMGSMLSS 79 Query: 75 -KSNNLAQASSYIGKNI 90 +S+ QASS +G+ + Sbjct: 80 FQSSQALQASSLVGRKV 96 >gi|306817693|ref|ZP_07451435.1| flagellar hook assembly protein FlgD [Mobiluncus mulieris ATCC 35239] gi|304649507|gb|EFM46790.1| flagellar hook assembly protein FlgD [Mobiluncus mulieris ATCC 35239] Length = 334 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 63/110 (57%), Gaps = 11/110 (10%) Query: 12 QEFSKSKSKK----TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67 Q K+++KK LG+D F+KLL+ +K+QDPT+PM ++ + Q + + MEQ +QM Sbjct: 68 QRTDKAQTKKEDPTKLGKDDFMKLLLATLKYQDPTQPMDTAQLLEQTSTMTNMEQMIQMT 127 Query: 68 STLQELLKSNNLAQASSYIGK----NITNADG---SISGVVNAIQVSSTG 110 + ++ Q +S +G+ ++ + +G + +G V+A++ + G Sbjct: 128 EASKRAYEAQQRVQGASMVGRTAVYDLIDDEGNAKTTAGKVDAVEFLAEG 177 >gi|327441048|dbj|BAK17413.1| flagellar hook capping protein [Solibacillus silvestris StLB046] Length = 231 Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 25/49 (51%), Positives = 36/49 (73%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 LG+DAFLK+LITQ+++QDPT PM E ++Q+A FS +EQ M ++ Sbjct: 29 LGKDAFLKILITQLQNQDPTSPMDDKEFISQMAQFSSLEQMQNMTKAME 77 >gi|326796598|ref|YP_004314418.1| flagellar hook capping protein [Marinomonas mediterranea MMB-1] gi|326547362|gb|ADZ92582.1| flagellar hook capping protein [Marinomonas mediterranea MMB-1] Length = 236 Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 34/102 (33%), Positives = 58/102 (56%), Gaps = 9/102 (8%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST---LQELLKSNNLAQASS 84 F++L I Q+K+QDPT P + + V+Q+A FS +EQ M+ST + E L S+ AS+ Sbjct: 48 FMELYIAQLKNQDPTAPQETGDMVSQMAEFSSLEQLTDMSSTMTSMSEALVSSQALTAST 107 Query: 85 YIGKNIT------NADGSISGVVNAIQVSSTGLTAITVDNTE 120 +GK++ + DGS + A S + T +T+ +++ Sbjct: 108 LVGKSVYVDQDTISYDGSTDAYIKATIPSDSSATTVTITDSD 149 >gi|304437041|ref|ZP_07397004.1| flagellar hook capping protein [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369992|gb|EFM23654.1| flagellar hook capping protein [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 174 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 32/80 (40%), Positives = 49/80 (61%), Gaps = 7/80 (8%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK-- 75 K LG+DAFL+LL+TQ+++QDP P +E ++QLA FS +EQ ++ L+++ K Sbjct: 34 KDNSALGKDAFLQLLVTQMRYQDPLNPQDNAEYLSQLAQFSALEQMTNVSKGLEKVSKIV 93 Query: 76 -----SNNLAQASSYIGKNI 90 S + Q SS IG+ I Sbjct: 94 DNIDSSVLIGQLSSMIGQPI 113 >gi|83647174|ref|YP_435609.1| flagellar hook capping protein [Hahella chejuensis KCTC 2396] gi|83635217|gb|ABC31184.1| Flagellar hook capping protein [Hahella chejuensis KCTC 2396] Length = 225 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 37/98 (37%), Positives = 58/98 (59%), Gaps = 12/98 (12%) Query: 16 KSKSKKT-LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL- 73 KS ++K LG++ F+ L+I Q+ +Q P +P + VAQLA FS +E +NST+ + Sbjct: 22 KSANRKNELGKNEFMDLMIAQLNNQSPLDPQDNTAFVAQLAQFSSVEGIQSLNSTVDTMA 81 Query: 74 --LKSNNLAQASSYIGKN--------ITNADGSISGVV 101 +S QAS+ +G++ I +ADGSI+GVV Sbjct: 82 SQFRSAQALQASAMVGRDVLAPMESAIKSADGSINGVV 119 >gi|319787122|ref|YP_004146597.1| flagellar hook capping protein [Pseudoxanthomonas suwonensis 11-1] gi|317465634|gb|ADV27366.1| flagellar hook capping protein [Pseudoxanthomonas suwonensis 11-1] Length = 221 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 41/126 (32%), Positives = 63/126 (50%), Gaps = 17/126 (13%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS---TLQ 71 SK KS +LGQ FL+L+ Q+KHQDP PM+ S + Q+A FS ++ +NS Q Sbjct: 20 SKDKSD-SLGQADFLRLMTEQLKHQDPLNPMENSAFLGQMAQFSTVQGIETLNSQVRAFQ 78 Query: 72 ELLKSNNLAQASSYIGKNI--------TNADGSISGVVNA-----IQVSSTGLTAITVDN 118 L S+ L + ++ +G+++ + GS G V A +Q + T TV Sbjct: 79 SALGSDQLLRGAAMVGRDVLVPSTKLALDDSGSAHGAVAAPDAGSVQFTVTDANGRTVRE 138 Query: 119 TEIPIT 124 +P T Sbjct: 139 FSVPAT 144 >gi|269976273|ref|ZP_06183269.1| putative flagellar hook capping protein [Mobiluncus mulieris 28-1] gi|269935602|gb|EEZ92140.1| putative flagellar hook capping protein [Mobiluncus mulieris 28-1] Length = 374 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 63/110 (57%), Gaps = 11/110 (10%) Query: 12 QEFSKSKSKK----TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67 Q K+++KK LG+D F+KLL+ +K+QDPT+PM ++ + Q + + MEQ +QM Sbjct: 99 QRTDKAQTKKEDPTKLGKDDFMKLLLATLKYQDPTQPMDTAQLLEQTSTMTNMEQMIQMT 158 Query: 68 STLQELLKSNNLAQASSYIGK----NITNADG---SISGVVNAIQVSSTG 110 + ++ Q +S +G+ ++ + +G + +G V+A++ + G Sbjct: 159 EASKRAYEAQQRVQGASMVGRTAVYDLIDDEGNAKTTAGKVDAVEFLAEG 208 >gi|332703534|ref|ZP_08423622.1| flagellar hook capping protein [Desulfovibrio africanus str. Walvis Bay] gi|332553683|gb|EGJ50727.1| flagellar hook capping protein [Desulfovibrio africanus str. Walvis Bay] Length = 236 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 4/78 (5%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75 KSKS L Q FL LL+ Q++HQDP PM+ + AQLA FS +EQ ++N ++ L Sbjct: 22 KSKSG-ALDQSTFLNLLMAQLQHQDPLNPMEDKDFTAQLAQFSSLEQLNKINEGIEGLNS 80 Query: 76 S---NNLAQASSYIGKNI 90 S ++ A S+IGK+I Sbjct: 81 SAGRQDMLGAVSFIGKDI 98 >gi|332981438|ref|YP_004462879.1| flagellar hook capping protein [Mahella australiensis 50-1 BON] gi|332699116|gb|AEE96057.1| flagellar hook capping protein [Mahella australiensis 50-1 BON] Length = 143 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 40/113 (35%), Positives = 63/113 (55%), Gaps = 16/113 (14%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77 KS K L QD FLKLL Q+++Q+P +PM +AQ+A FS +EQ M++ L Sbjct: 20 KSAK-LRQDDFLKLLAAQMQNQNPLDPMDDKAFIAQMAQFSSLEQMQNMSANL------- 71 Query: 78 NLAQASSYIGKNI-------TNADGSISGVVNAIQVSSTGLTAITVDNTEIPI 123 ++AQA + IGK + ISG V++++ S+ G +TV ++P+ Sbjct: 72 SMAQAVAMIGKEVYATIPTERGVQQQISGTVDSVKFSN-GQAILTVGAVDVPL 123 >gi|307699887|ref|ZP_07636938.1| flagellar hook capping protein [Mobiluncus mulieris FB024-16] gi|307614925|gb|EFN94143.1| flagellar hook capping protein [Mobiluncus mulieris FB024-16] Length = 335 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 63/110 (57%), Gaps = 11/110 (10%) Query: 12 QEFSKSKSKK----TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67 Q K+++KK LG+D F+KLL+ +K+QDPT+PM ++ + Q + + MEQ +QM Sbjct: 63 QRTDKAQTKKDDPTKLGKDDFMKLLLATLKYQDPTQPMDTAQLLEQTSTMTNMEQMIQMT 122 Query: 68 STLQELLKSNNLAQASSYIGK----NITNADG---SISGVVNAIQVSSTG 110 + ++ Q +S +G+ ++ + +G + +G V+A++ + G Sbjct: 123 EASKRAYEAQQRVQGASMVGRTAVYDLIDDEGNAKTTAGKVDAVEFLAEG 172 >gi|146278629|ref|YP_001168788.1| flagellar basal body rod modification protein [Rhodobacter sphaeroides ATCC 17025] gi|145556870|gb|ABP71483.1| flagellar hook capping protein [Rhodobacter sphaeroides ATCC 17025] Length = 218 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 3/91 (3%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 ME+++ +PT S T + FL++L TQ+++QDP PM++ + QLA FS + Sbjct: 1 MEVSSATSPTAGSAPASGRSTTSDYETFLRMLTTQLQNQDPLNPMESDDFAMQLATFSGV 60 Query: 61 EQSVQMNSTLQEL---LKSNNLAQASSYIGK 88 EQ V+ N L + + L++ + +IG+ Sbjct: 61 EQQVRTNQILTGMSGSFGAMGLSELAGWIGR 91 >gi|117926845|ref|YP_867462.1| flagellar hook capping protein [Magnetococcus sp. MC-1] gi|117610601|gb|ABK46056.1| flagellar hook capping protein [Magnetococcus sp. MC-1] Length = 224 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 52/88 (59%), Gaps = 5/88 (5%) Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVF---SQMEQSV 64 +P +++ + + Q FL++L Q++HQDP EPM+ +E +QLA F SQ + S Sbjct: 14 DPNASKYTSTSTDAKELQSDFLRMLTAQLEHQDPLEPMENTEFTSQLATFEGLSQQQNST 73 Query: 65 QMNSTLQELLK--SNNLAQASSYIGKNI 90 Q+ L EL+ ++ + QA +YIG+ + Sbjct: 74 QLLQQLVELMSGGTDQVGQAVAYIGREV 101 >gi|169831905|ref|YP_001717887.1| flagellar hook capping protein [Candidatus Desulforudis audaxviator MP104C] gi|169638749|gb|ACA60255.1| flagellar hook capping protein [Candidatus Desulforudis audaxviator MP104C] Length = 134 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 2/88 (2%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS 84 QD FLKLL+ Q+K+ P P + + Q A F +E+ V++ L+E+ ++ LAQA+ Sbjct: 28 QDTFLKLLVAQLKNPSPFSPPDTDKMMEQAAQFGMLERLVKVEEALREMSRAAYLAQAAE 87 Query: 85 YIGKNIT--NADGSISGVVNAIQVSSTG 110 +G+ + D ISG V + ++ G Sbjct: 88 IVGREVVVLAGDRQISGTVERVLLNERG 115 >gi|258592497|emb|CBE68806.1| putative basal-body rod modification protein flgD [NC10 bacterium 'Dutch sediment'] Length = 234 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 35/92 (38%), Positives = 60/92 (65%), Gaps = 10/92 (10%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74 + S + LG+DAFLKLL+ Q+++Q+P P++ ++ +AQ A F+ +EQ Q+N+++ +L Sbjct: 21 TSSALDRGLGKDAFLKLLVAQLRNQNPLNPLQGTDFIAQTAQFTSLEQLQQINASIAQLS 80 Query: 75 KSN---------NLAQASSYIGKNITNADGSI 97 S+ + ASSYIGK +T A+G+I Sbjct: 81 ASSAATSGSNSLDAVLASSYIGKVVT-ANGTI 111 >gi|218462420|ref|ZP_03502511.1| flagellar basal body rod modification protein [Rhizobium etli Kim 5] Length = 61 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 34/42 (80%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58 ++ K TL D FL+LLI Q+K+QDPT+PM ASEQ++QLA FS Sbjct: 20 AQKKATLNYDNFLQLLIAQMKNQDPTDPMDASEQMSQLASFS 61 >gi|307293788|ref|ZP_07573632.1| flagellar hook capping protein [Sphingobium chlorophenolicum L-1] gi|306879939|gb|EFN11156.1| flagellar hook capping protein [Sphingobium chlorophenolicum L-1] Length = 218 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 3/74 (4%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKS 76 K +GQ FL+LL Q++ QDP EP+ ++ VAQ+A + +MN TL+ L L Sbjct: 25 KSEMGQADFLRLLTAQMQTQDPFEPVDNAQMVAQMATITNSSGIAEMNQTLKNLASELTG 84 Query: 77 NNLAQASSYIGKNI 90 + L A+S+IGK++ Sbjct: 85 SRLGDAASWIGKSM 98 >gi|331017027|gb|EGH97083.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 229 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 48/71 (67%), Gaps = 3/71 (4%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNL 79 LG+DAFL+LL+TQ+K+Q+P +P ++ VAQLA FS +E + T+ + +S+ Sbjct: 33 LGKDAFLQLLVTQMKNQNPLDPQDNTQFVAQLAQFSSLESMQNLTKTVDTIASSYQSSQA 92 Query: 80 AQASSYIGKNI 90 QASS +G+++ Sbjct: 93 LQASSLVGRSV 103 >gi|28869139|ref|NP_791758.1| basal-body rod modification protein FlgD [Pseudomonas syringae pv. tomato str. DC3000] gi|213967583|ref|ZP_03395731.1| basal-body rod modification protein FlgD [Pseudomonas syringae pv. tomato T1] gi|301385712|ref|ZP_07234130.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. tomato Max13] gi|302060076|ref|ZP_07251617.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. tomato K40] gi|302134835|ref|ZP_07260825.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28852379|gb|AAO55453.1| basal-body rod modification protein FlgD [Pseudomonas syringae pv. tomato str. DC3000] gi|213927884|gb|EEB61431.1| basal-body rod modification protein FlgD [Pseudomonas syringae pv. tomato T1] Length = 229 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 48/71 (67%), Gaps = 3/71 (4%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNL 79 LG+DAFL+LL+TQ+K+Q+P +P ++ VAQLA FS +E + T+ + +S+ Sbjct: 33 LGKDAFLQLLVTQMKNQNPLDPQDNTQFVAQLAQFSSLESMQNLTKTVDTIASSYQSSQA 92 Query: 80 AQASSYIGKNI 90 QASS +G+++ Sbjct: 93 LQASSLVGRSV 103 >gi|291334311|gb|ADD93972.1| predicted flagellar hook capping protein [uncultured marine bacterium MedDCM-OCT-S09-C247] Length = 230 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/104 (34%), Positives = 62/104 (59%), Gaps = 11/104 (10%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69 T+Q ++ +K TLGQ FLKL+ TQ+++QDP PM + +AQ+A FS + ++N++ Sbjct: 20 TRQAGTQKAAKDTLGQSDFLKLMTTQLQNQDPFAPMDNGDFIAQMAQFSTVTGIQEVNNS 79 Query: 70 LQELLKSNN---LAQASSYIGK------NITNAD--GSISGVVN 102 + +L+ + +A AS+ +G NI AD G + GV++ Sbjct: 80 IGQLVDEFDQARIATASNLLGHSVLVPGNIGRADEEGQLHGVLD 123 >gi|294013085|ref|YP_003546545.1| flagellar basal-body rod modification protein FlgD [Sphingobium japonicum UT26S] gi|292676415|dbj|BAI97933.1| flagellar basal-body rod modification protein FlgD [Sphingobium japonicum UT26S] Length = 218 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 3/75 (4%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LK 75 K +GQ FL+LL Q++ QDP EP+ ++ VAQ+A + +MN TL+ L L Sbjct: 24 GKSEMGQADFLRLLTAQMQTQDPFEPVDNAQMVAQMATITNSSGIAEMNQTLKNLASELT 83 Query: 76 SNNLAQASSYIGKNI 90 + L A+S+IGK++ Sbjct: 84 GSRLGDAASWIGKSM 98 >gi|256370962|ref|YP_003108786.1| flagellar hook capping protein [Acidimicrobium ferrooxidans DSM 10331] gi|256007546|gb|ACU53113.1| flagellar hook capping protein [Acidimicrobium ferrooxidans DSM 10331] Length = 159 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 61/104 (58%), Gaps = 3/104 (2%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIG 87 FL LL+T++++Q+P PM S+ V+Q + S++E + S L ++ S + ASS IG Sbjct: 31 FLNLLVTELQNQNPLSPMDPSQMVSQTSSLSEVELLSTIQSALTQMASSQGILSASSLIG 90 Query: 88 KNITNADGS--ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129 +++T DGS ++G V+ + S+ G+ + V +PI I + Sbjct: 91 QSVTYQDGSGEVAGQVSGVGQSANGVV-LDVGGQSVPIANVIAV 133 >gi|209963570|ref|YP_002296485.1| basal-body rod modification protein FlgD, putative [Rhodospirillum centenum SW] gi|209957036|gb|ACI97672.1| basal-body rod modification protein FlgD, putative [Rhodospirillum centenum SW] Length = 219 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/73 (42%), Positives = 48/73 (65%), Gaps = 5/73 (6%) Query: 23 LGQD--AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77 L QD +FLKLL Q+ +QDP P+ A++ V QLA FS +EQ+VQ N+ L E+ L+S+ Sbjct: 24 LAQDTQSFLKLLTAQLANQDPMAPIDATQFVTQLAQFSSVEQAVQSNTRLAEVLGELRSS 83 Query: 78 NLAQASSYIGKNI 90 + +Y+G+ + Sbjct: 84 SERLDLAYVGRTV 96 >gi|254436854|ref|ZP_05050348.1| flagellar hook capping protein, putative [Octadecabacter antarcticus 307] gi|198252300|gb|EDY76614.1| flagellar hook capping protein, putative [Octadecabacter antarcticus 307] Length = 220 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/108 (36%), Positives = 55/108 (50%), Gaps = 9/108 (8%) Query: 1 MEINTEVNPTQQEFSKSK---SKKTLGQD--AFLKLLITQIKHQDPTEPMKASEQVAQLA 55 MEI+ + P Q S + SK + D FLK+L Q+++QDP P +SE QLA Sbjct: 1 MEISPALTPVTQPSSAPQTETSKTVISSDFETFLKMLTVQMENQDPLNPTDSSEYAQQLA 60 Query: 56 VFSQMEQSVQMNSTLQELLKSNN---LAQASSYIGKNI-TNADGSISG 99 FS +EQ+V N L L+ N +AQ + ++GK A G G Sbjct: 61 TFSGVEQAVLTNDLLSALMVQMNTTGMAQMADWVGKEARATAPGHFDG 108 >gi|78776231|ref|YP_392546.1| flagellar hook capping protein [Sulfurimonas denitrificans DSM 1251] gi|78496771|gb|ABB43311.1| Flagellar hook capping protein [Sulfurimonas denitrificans DSM 1251] Length = 221 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/64 (40%), Positives = 41/64 (64%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77 K K LG+D F+KLL+ +++HQDPTEPM + + ++Q + + +E S N L EL S Sbjct: 23 KDKTALGKDDFMKLLLVELQHQDPTEPMDSEKILSQTSQLATLEASENTNKALSELAASM 82 Query: 78 NLAQ 81 + +Q Sbjct: 83 SASQ 86 >gi|302670725|ref|YP_003830685.1| flagellar hook capping protein FlgD [Butyrivibrio proteoclasticus B316] gi|302395198|gb|ADL34103.1| flagellar hook capping protein FlgD [Butyrivibrio proteoclasticus B316] Length = 237 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 7/87 (8%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 N EV T +E + + +D+FLK+L+ Q+K+QDP EP +E + Q A F+Q+EQ Sbjct: 13 NGEVANTVKEDATKNATAGYDKDSFLKILVAQMKYQDPMEPTSNTEYINQYATFTQVEQ- 71 Query: 64 VQMNSTLQELLKSNNLAQASSYIGKNI 90 L + S L++AS +GK + Sbjct: 72 ------LSNMANSMALSRASEMVGKTV 92 >gi|89068735|ref|ZP_01156121.1| flagellar hook assembly protein FlgD [Oceanicola granulosus HTCC2516] gi|89045698|gb|EAR51760.1| flagellar hook assembly protein FlgD [Oceanicola granulosus HTCC2516] Length = 222 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/75 (45%), Positives = 45/75 (60%), Gaps = 5/75 (6%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS----NNLAQAS 83 FLK+L Q+ +QDP PM +S V QLA SQ+EQ+VQ N L+ELL ++A+ Sbjct: 31 FLKMLTAQVTNQDPLAPMDSSTFVTQLAQLSQVEQTVQSNGHLRELLAGVQSFGSMAEV- 89 Query: 84 SYIGKNITNADGSIS 98 IGK +T A IS Sbjct: 90 QLIGKPVTYASDRIS 104 >gi|144900454|emb|CAM77318.1| Basal-body rod modification protein FlgD [Magnetospirillum gryphiswaldense MSR-1] Length = 226 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 3/68 (4%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNLAQA 82 D FL +L Q+K+QDP PM ++E QL FS +EQ + N L+ L+ ++N AQA Sbjct: 27 DTFLTMLTVQLKNQDPLSPMDSTEFTNQLVQFSAVEQQIASNKNLENLISVTQTNTKAQA 86 Query: 83 SSYIGKNI 90 +YIG I Sbjct: 87 IAYIGHTI 94 >gi|309779446|ref|ZP_07674207.1| basal-body rod modification protein FlgD [Ralstonia sp. 5_7_47FAA] gi|308921687|gb|EFP67323.1| basal-body rod modification protein FlgD [Ralstonia sp. 5_7_47FAA] Length = 218 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 43/66 (65%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS 84 Q+ F++LL+ Q+K+QDP PM S+ +QLA + + Q+N+T+ +L N QASS Sbjct: 30 QNTFMQLLVAQLKNQDPLNPMDNSQMTSQLAQINTVNGIQQLNTTMSSMLTQNATTQASS 89 Query: 85 YIGKNI 90 IG+++ Sbjct: 90 MIGRSV 95 >gi|157165774|ref|YP_001466012.1| flagellar basal body rod modification protein [Campylobacter concisus 13826] gi|112801160|gb|EAT98504.1| flagellar hook assembly protein [Campylobacter concisus 13826] Length = 235 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 3/79 (3%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNL 79 L +DAF+KLL+T+++HQDPT PM + + Q + + +E N ++EL LKSN Sbjct: 39 LDKDAFMKLLLTELQHQDPTSPMDTEKMLTQTSQLASVEMQENTNKAMKELVNQLKSNAN 98 Query: 80 AQASSYIGKNITNADGSIS 98 A A S +GK ++ +++ Sbjct: 99 AYAISALGKMVSTGSNAVT 117 >gi|147678417|ref|YP_001212632.1| flagellar hook capping protein [Pelotomaculum thermopropionicum SI] gi|146274514|dbj|BAF60263.1| flagellar hook capping protein [Pelotomaculum thermopropionicum SI] Length = 132 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 2/88 (2%) Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA 80 K L ++AFL+L + Q+K+QDP P ++ + QL+ FS +EQ +N + + L Sbjct: 22 KALDKNAFLQLFVAQLKNQDPLSPQDSNTFITQLSQFSMLEQLASLNEEVTLARRFQELG 81 Query: 81 QASSYIGKNIT--NADGSISGVVNAIQV 106 +A++ +G+ + DG +SG V + V Sbjct: 82 EAAALLGRQVKVQTGDGDVSGQVEKVAV 109 >gi|296534176|ref|ZP_06896666.1| basal-body rod modification protein FlgD [Roseomonas cervicalis ATCC 49957] gi|296265496|gb|EFH11631.1| basal-body rod modification protein FlgD [Roseomonas cervicalis ATCC 49957] Length = 226 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 5/77 (6%) Query: 19 SKKTLGQD--AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL-- 74 +K LG D +FL LL TQ+++QDP +P +SE QLA FSQ+EQ + N+ L+ LL Sbjct: 22 AKTQLGSDMQSFLTLLTTQLQNQDPMDPTDSSEFATQLAQFSQVEQQIATNAHLESLLSL 81 Query: 75 -KSNNLAQASSYIGKNI 90 +S +L ++ +G + Sbjct: 82 QQSASLLSSTGLVGNTV 98 >gi|119503643|ref|ZP_01625726.1| Flagellar hook capping protein [marine gamma proteobacterium HTCC2080] gi|119460705|gb|EAW41797.1| Flagellar hook capping protein [marine gamma proteobacterium HTCC2080] Length = 239 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 55/89 (61%), Gaps = 4/89 (4%) Query: 7 VNPTQQ-EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65 +NPT+ E K+ S + +G + FL+L+I Q+++QDPT+PM ++QLA F+Q+ + Sbjct: 19 LNPTRAAEKGKAGSAEEMGSEEFLQLMIAQLENQDPTKPMDQMAFMSQLAQFTQVSGIQE 78 Query: 66 MN---STLQELLKSNNLAQASSYIGKNIT 91 +N S L E L QAS +G++++ Sbjct: 79 LNESFSGLTETLTGQQALQASQMVGRSVS 107 >gi|268316349|ref|YP_003290068.1| flagellar hook capping protein [Rhodothermus marinus DSM 4252] gi|262333883|gb|ACY47680.1| flagellar hook capping protein [Rhodothermus marinus DSM 4252] Length = 230 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/93 (35%), Positives = 54/93 (58%), Gaps = 12/93 (12%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74 + + + L ++AFL+LL+TQ+++QDP P+ + E AQLA FS +EQ + +N TL Sbjct: 22 APAPPSQELDKEAFLRLLVTQLRYQDPINPLDSREFAAQLAQFSTVEQLIGINETLA--- 78 Query: 75 KSNNLAQASSY--IGKNITN--ADGSISGVVNA 103 AQ+ +Y + + I N A G + V+ A Sbjct: 79 -----AQSDAYAALAQGIHNSVAAGLVGKVIEA 106 >gi|229918634|ref|YP_002887280.1| flagellar hook capping protein [Exiguobacterium sp. AT1b] gi|229470063|gb|ACQ71835.1| flagellar hook capping protein [Exiguobacterium sp. AT1b] Length = 142 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 12/125 (9%) Query: 5 TEVNPTQQEF-----SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59 T + P +F S K+ +D F+KLL+ QI +QDP PM+ E +AQ+A FS Sbjct: 2 TSIQPKTNDFTLPDQSLPKATNQYDKDMFMKLLLAQIANQDPMSPMEDKEFIAQMAQFSS 61 Query: 60 MEQSVQMNSTLQELLKSNNLAQASSY---IGKNIT----NADGSISGVVNAIQVSSTGLT 112 +EQ ++ L +L +++ S Y IGK I ++ + G + +S LT Sbjct: 62 LEQMQAISKQLDSVLVDRHMSSISEYSSMIGKTIDFTSETSEETTKGSGRVVSISRNDLT 121 Query: 113 AITVD 117 D Sbjct: 122 GYMAD 126 >gi|260429426|ref|ZP_05783403.1| flagellar basal body rod modification protein [Citreicella sp. SE45] gi|260420049|gb|EEX13302.1| flagellar basal body rod modification protein [Citreicella sp. SE45] Length = 222 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 5/79 (6%) Query: 15 SKSKSKKTLGQD--AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72 + S +K L D FLK+L TQ+++QDP P+ +E QLA FS +EQ V N L+E Sbjct: 18 TASTNKTVLSPDFETFLKMLTTQMQNQDPLNPLDTTEYATQLATFSSVEQQVLTNDLLKE 77 Query: 73 L---LKSNNLAQASSYIGK 88 L + N + + +IGK Sbjct: 78 LTGVIGGNQFQELAGWIGK 96 >gi|254522227|ref|ZP_05134282.1| flagellar protein [Stenotrophomonas sp. SKA14] gi|219719818|gb|EED38343.1| flagellar protein [Stenotrophomonas sp. SKA14] Length = 227 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/115 (33%), Positives = 63/115 (54%), Gaps = 16/115 (13%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST---LQEL 73 +K K TL Q FL+L+ Q++HQDP +PM ++ VAQ+A S ++ +N T QE Sbjct: 27 TKKKNTLDQADFLRLMTEQLQHQDPLKPMDNTQMVAQMAQMSTVQGITDLNKTVKGFQES 86 Query: 74 LKSNNLAQASSYIG--------KNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120 + S+ + + ++ +G K + +GS+ G V A S G+ ITVD T+ Sbjct: 87 MASDQVLRGAALVGHQVLVPSEKLMLEKEGSVEGTVAA---PSAGI--ITVDITD 136 >gi|225375326|ref|ZP_03752547.1| hypothetical protein ROSEINA2194_00951 [Roseburia inulinivorans DSM 16841] gi|225212815|gb|EEG95169.1| hypothetical protein ROSEINA2194_00951 [Roseburia inulinivorans DSM 16841] Length = 224 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/56 (46%), Positives = 39/56 (69%), Gaps = 2/56 (3%) Query: 18 KSKKT--LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 K KKT LG D FL++L ++++QDP EP +E +AQLA FSQ+E + + ST++ Sbjct: 29 KDKKTNELGYDQFLQILCAEMQYQDPLEPTSNTEYIAQLATFSQLESQLSVQSTIE 84 >gi|332701536|ref|ZP_08421624.1| flagellar hook capping protein [Desulfovibrio africanus str. Walvis Bay] gi|332551685|gb|EGJ48729.1| flagellar hook capping protein [Desulfovibrio africanus str. Walvis Bay] Length = 232 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/93 (30%), Positives = 55/93 (59%), Gaps = 4/93 (4%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 +++ + +N T E + ++ +L QD FL++L+ Q++ QDPTEP ++ V Q+ ++Q+ Sbjct: 3 IDVTSYLNSTMPE-ADTEPSSSLDQDDFLQILVAQLEQQDPTEPTDNAQMVDQMTSYAQL 61 Query: 61 EQSVQMNSTLQEL---LKSNNLAQASSYIGKNI 90 EQ +++ + L + S QA+ YIG + Sbjct: 62 EQLTNISTAMDTLIAGMASLGATQAAGYIGMGV 94 >gi|190574264|ref|YP_001972109.1| flagellar basal body rod modification protein [Stenotrophomonas maltophilia K279a] gi|190012186|emb|CAQ45809.1| putative basal-body rod modification protein [Stenotrophomonas maltophilia K279a] Length = 227 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 68/125 (54%), Gaps = 19/125 (15%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST---LQEL 73 +K K TL Q FL+L+ Q++HQDP +PM ++ VAQ+A S ++ +N T QE Sbjct: 27 TKKKNTLDQADFLRLMTEQLQHQDPLKPMDNTQMVAQMAQMSTVQGITDLNKTVKGFQES 86 Query: 74 LKSNNLAQASSYIG--------KNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITT 125 + S+ + + ++ +G K + +G++ G V A S G+ ITVD T+ T Sbjct: 87 MASDQVLRGAALVGHQVLVPSEKLVLEKEGNVEGTVAA---PSAGI--ITVDITD---AT 138 Query: 126 GIRIS 130 G +++ Sbjct: 139 GAKVT 143 >gi|294679045|ref|YP_003579660.1| flagellar hook capping protein [Rhodobacter capsulatus SB 1003] gi|294477865|gb|ADE87253.1| flagellar hook capping protein [Rhodobacter capsulatus SB 1003] Length = 225 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/58 (46%), Positives = 36/58 (62%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSY 85 FLKLL TQ+ +QDPT PM +++ QLA FSQ+EQ V+ N+ L L + S Y Sbjct: 36 FLKLLTTQMTNQDPTSPMDSADYAVQLATFSQVEQQVKTNTLLTSLATQMGVMGMSEY 93 >gi|146307870|ref|YP_001188335.1| flagellar basal body rod modification protein [Pseudomonas mendocina ymp] gi|145576071|gb|ABP85603.1| flagellar hook capping protein [Pseudomonas mendocina ymp] Length = 221 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 49/77 (63%), Gaps = 3/77 (3%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL-- 74 ++ K LG++ FL LL+ Q+ +Q+P EP E +AQLA FS +E ++N +++ +L Sbjct: 20 TRQNKDLGKNEFLNLLVAQLNNQNPLEPQGNGEFIAQLAQFSSLEGIEKLNKSMESMLSS 79 Query: 75 -KSNNLAQASSYIGKNI 90 +S+ QASS +G+ + Sbjct: 80 YQSSQALQASSLVGRKV 96 >gi|189426346|ref|YP_001953523.1| flagellar hook capping protein [Geobacter lovleyi SZ] gi|189422605|gb|ACD97003.1| flagellar hook capping protein [Geobacter lovleyi SZ] Length = 223 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/76 (43%), Positives = 49/76 (64%), Gaps = 5/76 (6%) Query: 20 KKTLGQD--AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL--K 75 K+T G D AFLKL I QI++QDP P ++ ++Q++ +Q+EQS + L LL + Sbjct: 22 KQTFGMDTDAFLKLFIAQIQYQDPLAPQDTNDMLSQISQLTQVEQSYNTATALNNLLTAQ 81 Query: 76 SNNLAQAS-SYIGKNI 90 SN+LA +S IGK+I Sbjct: 82 SNSLALSSVGLIGKDI 97 >gi|311694360|gb|ADP97233.1| flagellar hook capping protein [marine bacterium HP15] Length = 225 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/100 (32%), Positives = 60/100 (60%), Gaps = 12/100 (12%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNL 79 LG++ F++L++ Q+K+Q+P EP + E ++QLA FS +E+ ++ T++++ +S Sbjct: 30 LGRNEFMELMLAQLKNQNPLEPQENGEFISQLAQFSSLEEMQNLSGTVEDVVGQFRSTQA 89 Query: 80 AQASSYIGK--------NITNADGSISGVVNAIQVSSTGL 111 QAS+ +GK I A+G I+G + + S+ GL Sbjct: 90 LQASAMVGKTVLAPSQIGILGAEGEITGTIQ-VPASTGGL 128 >gi|149203159|ref|ZP_01880130.1| Possible FlgD protein [Roseovarius sp. TM1035] gi|149143705|gb|EDM31741.1| Possible FlgD protein [Roseovarius sp. TM1035] Length = 230 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 3/65 (4%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQA 82 + FL+LL TQ+++QDP P+++S+ QLA FS +EQ V N L +L L + L+Q Sbjct: 39 ETFLRLLTTQLRNQDPLNPIESSDFAVQLATFSTVEQQVLTNDLLTDLGARLGAQGLSQV 98 Query: 83 SSYIG 87 S +IG Sbjct: 99 SGWIG 103 >gi|325927874|ref|ZP_08189098.1| flagellar hook capping protein [Xanthomonas perforans 91-118] gi|325541714|gb|EGD13232.1| flagellar hook capping protein [Xanthomonas perforans 91-118] Length = 221 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 55/98 (56%), Gaps = 11/98 (11%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQEL 73 +K ++ LGQ FLKL+ Q++HQDP +PM+ S + QLA FS ++ +N S + Sbjct: 21 AKKEEALGQADFLKLMTEQLQHQDPLKPMENSAFLGQLAQFSTVQGIGDLNTKVSNFSDS 80 Query: 74 LKSNNLAQASSYIGKNI--------TNADGSISGVVNA 103 + S+ + + ++ +G N+ +A GS GVV A Sbjct: 81 MNSDQVLKGAALVGHNVLVPSAQVAIDATGSAKGVVAA 118 >gi|329898290|ref|ZP_08272373.1| Flagellar basal-body rod modification protein FlgD [gamma proteobacterium IMCC3088] gi|328920855|gb|EGG28298.1| Flagellar basal-body rod modification protein FlgD [gamma proteobacterium IMCC3088] Length = 228 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 3/71 (4%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNL 79 L +DAFL+L Q+K Q+P +PMK VAQLA FS +E M ++L+ L L++++L Sbjct: 30 LDRDAFLQLFTAQLKSQNPLDPMKNEAFVAQLAQFSSVEGIKGMQASLETLVSNLRTDSL 89 Query: 80 AQASSYIGKNI 90 SS +GK + Sbjct: 90 LTGSSLVGKKV 100 >gi|87307399|ref|ZP_01089544.1| probable basal-body rod modification protein FlgD [Blastopirellula marina DSM 3645] gi|87290139|gb|EAQ82028.1| probable basal-body rod modification protein FlgD [Blastopirellula marina DSM 3645] Length = 169 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 50/85 (58%), Gaps = 3/85 (3%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSY 85 D FLKL+I ++++QDP EPMK SE + Q+ + + Q+++TL +L N+ A++ Sbjct: 2 DQFLKLMIAELQNQDPMEPMKNSEMLEQIGQIRNITATEQLSTTLTNVLDGQNILSATTL 61 Query: 86 IGKNI---TNADGSISGVVNAIQVS 107 IG + T+ + GVV Q++ Sbjct: 62 IGGQVQALTDQGDVVFGVVTGAQIT 86 >gi|78047587|ref|YP_363762.1| flagellar basal body rod modification protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78036017|emb|CAJ23708.1| flagellar hook capping protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 221 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 55/98 (56%), Gaps = 11/98 (11%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQEL 73 +K ++ LGQ FLKL+ Q++HQDP +PM+ S + QLA FS ++ +N S + Sbjct: 21 AKKEEALGQADFLKLMTEQLQHQDPLKPMENSAFLGQLAQFSTVQGIGDLNTKVSNFSDS 80 Query: 74 LKSNNLAQASSYIGKNI--------TNADGSISGVVNA 103 + S+ + + ++ +G N+ +A GS GVV A Sbjct: 81 MNSDQVLKGAALVGHNVLVPSAQVAIDATGSAKGVVAA 118 >gi|167585193|ref|ZP_02377581.1| flagellar basal body rod modification protein [Burkholderia ubonensis Bu] Length = 250 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q FLKLL+TQ+K+QDPT P+ +S+ +QLA + + Q+NS+L L L + Q Sbjct: 43 QSTFLKLLVTQLKNQDPTSPVDSSQMTSQLAQINTVSGIAQLNSSLTSLSTQLTAGQQTQ 102 Query: 82 ASSYIGKNI 90 A+ IG N+ Sbjct: 103 AAMLIGTNV 111 >gi|152997583|ref|YP_001342418.1| flagellar hook capping protein [Marinomonas sp. MWYL1] gi|150838507|gb|ABR72483.1| flagellar hook capping protein [Marinomonas sp. MWYL1] Length = 234 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 7/91 (7%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q+ FLKL I Q+K QDPT P ++ VAQ++ FS +E+ ++ L+ + L SN Sbjct: 43 QNVFLKLYIEQLKGQDPTAPQDTNDMVAQMSQFSSLERLTSISDQLENMATSLTSNQALS 102 Query: 82 ASSYIGKNITNADGS---ISGVVNAIQVSST 109 AS+ +GK+I DGS + V A+Q+ +T Sbjct: 103 ASTLVGKSIL-MDGSKVKVGDNVEAVQLKAT 132 >gi|95928664|ref|ZP_01311411.1| flagellar hook capping protein [Desulfuromonas acetoxidans DSM 684] gi|95135454|gb|EAT17106.1| flagellar hook capping protein [Desulfuromonas acetoxidans DSM 684] Length = 220 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 39/60 (65%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 + S K LG+ FL+LL+ Q+++QDP EP +E +AQLA FS +EQ N+ L ++ + Sbjct: 19 TASSKALGEADFLELLVAQLENQDPLEPQSNTEFIAQLATFSSLEQQTMTNNKLDSVISA 78 >gi|149911703|ref|ZP_01900311.1| flagellar basal body rod modification protein [Moritella sp. PE36] gi|149805233|gb|EDM65250.1| flagellar basal body rod modification protein [Moritella sp. PE36] Length = 237 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 3/75 (4%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LK 75 S+K LGQ+ F LL ++ QDP +P++ SE VAQ+A F+ + M S ++L + Sbjct: 32 SRKELGQEDFFSLLTQELAFQDPFKPVENSEMVAQMASFTTADGIANMGSKFEQLTTIMS 91 Query: 76 SNNLAQASSYIGKNI 90 SN QASS +G + Sbjct: 92 SNQALQASSLVGTKV 106 >gi|58582194|ref|YP_201210.1| flagellar basal body rod modification protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84624087|ref|YP_451459.1| flagellar basal body rod modification protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188576755|ref|YP_001913684.1| flagellar basal body rod modification protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|188576946|ref|YP_001913875.1| flagellar basal body rod modification protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|58426788|gb|AAW75825.1| flagellar protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84368027|dbj|BAE69185.1| flagellar protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188521207|gb|ACD59152.1| flagellar protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521398|gb|ACD59343.1| flagellar protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 221 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/97 (32%), Positives = 55/97 (56%), Gaps = 11/97 (11%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---L 74 K +++LGQ FLKL+ Q++HQDP +PM+ S + QLA FS ++ +N+ + + Sbjct: 22 KKEESLGQADFLKLMTEQLQHQDPLKPMENSAFLGQLAQFSTVQGIGDLNTKVSNFSTSM 81 Query: 75 KSNNLAQASSYIGKNI--------TNADGSISGVVNA 103 S+ + + ++ +G N+ +A GS GVV A Sbjct: 82 SSDQVLKGAALVGHNVLVPSAQVAIDATGSAKGVVTA 118 >gi|168334551|ref|ZP_02692707.1| flagellar hook assembly protein [Epulopiscium sp. 'N.t. morphotype B'] Length = 266 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 23/40 (57%), Positives = 32/40 (80%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 LG+DAF+ LLITQ+++QDP PM SE +AQ+A F+ +EQ Sbjct: 30 LGKDAFMSLLITQLQYQDPLSPMDNSEMMAQMAQFTALEQ 69 >gi|322421728|ref|YP_004200951.1| flagellar hook capping protein [Geobacter sp. M18] gi|320128115|gb|ADW15675.1| flagellar hook capping protein [Geobacter sp. M18] Length = 221 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/76 (40%), Positives = 47/76 (61%), Gaps = 5/76 (6%) Query: 20 KKTLG--QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77 KK+ G +D FLKL +TQ+++QDP P ++ ++QLA +Q+EQ+ N+ LQ LL Sbjct: 19 KKSTGMNKDDFLKLFVTQLQNQDPLNPQDGTQFISQLAQLTQVEQAYNTNTNLQNLLGQG 78 Query: 78 NLA---QASSYIGKNI 90 + A A S IGK + Sbjct: 79 SNAGTLAAVSLIGKQV 94 >gi|289208113|ref|YP_003460179.1| flagellar hook capping protein [Thioalkalivibrio sp. K90mix] gi|288943744|gb|ADC71443.1| flagellar hook capping protein [Thioalkalivibrio sp. K90mix] Length = 223 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 63/118 (53%), Gaps = 18/118 (15%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS---NNL 79 LGQ FLKL+ TQ+++QDP EPM+ E + Q+A FS + +++ + ++L +S + Sbjct: 27 LGQSDFLKLMTTQLQNQDPFEPMENGEFIGQMAQFSTVTGIEELSKSFEKLAQSMGQSQT 86 Query: 80 AQASSYIGKNI--------TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129 QA+S +GK++ DG + G V Q STG + E+ TG RI Sbjct: 87 LQAASLVGKDVLVPTDFSELGTDGMVRGAVELDQ--STGQLQV-----EVYSPTGERI 137 >gi|254475002|ref|ZP_05088388.1| flagellar hook capping protein [Ruegeria sp. R11] gi|214029245|gb|EEB70080.1| flagellar hook capping protein [Ruegeria sp. R11] Length = 228 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/83 (39%), Positives = 46/83 (55%), Gaps = 3/83 (3%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQASS 84 FLK+L Q ++QDP EP+ ++E AQLA FS +EQ VQ N + +Q L N+A S Sbjct: 35 FLKMLTAQARYQDPLEPIDSTEYSAQLAQFSMVEQQVQGNDLLTAMQAQLGLANMAAMSG 94 Query: 85 YIGKNITNADGSISGVVNAIQVS 107 ++G + S N I VS Sbjct: 95 WVGMETRSTAPSHFDGANPITVS 117 >gi|58038900|ref|YP_190864.1| basal-body rod modification protein FlgD [Gluconobacter oxydans 621H] gi|58001314|gb|AAW60208.1| Basal-body rod modification protein FlgD [Gluconobacter oxydans 621H] Length = 246 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 3/73 (4%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS---NNLAQASS 84 FL LL TQ++HQDP+ P A+LA F+ ++Q V+ N+ L L+ + N +A A S Sbjct: 58 FLTLLTTQLQHQDPSNPTSTDSFTAELAQFAGVQQQVETNTNLTSLISATQDNQMASAVS 117 Query: 85 YIGKNITNADGSI 97 IGK T + S+ Sbjct: 118 LIGKTTTASSSSL 130 >gi|254420677|ref|ZP_05034401.1| flagellar hook capping protein, putative [Brevundimonas sp. BAL3] gi|196186854|gb|EDX81830.1| flagellar hook capping protein, putative [Brevundimonas sp. BAL3] Length = 238 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/68 (44%), Positives = 43/68 (63%), Gaps = 2/68 (2%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL--KSNNLAQASSY 85 FL LL TQ+K+QDP P+ ++E AQL + +EQ + N L L+ +S NL A++Y Sbjct: 28 FLTLLTTQMKNQDPLSPLDSNEFTAQLTQMAGVEQQLLTNDLLTSLVAAQSGNLNNAAAY 87 Query: 86 IGKNITNA 93 IGK +T A Sbjct: 88 IGKEVTAA 95 >gi|21242728|ref|NP_642310.1| flagellar basal body rod modification protein [Xanthomonas axonopodis pv. citri str. 306] gi|294625273|ref|ZP_06703912.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294664590|ref|ZP_06729931.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|21108204|gb|AAM36846.1| flagellar protein [Xanthomonas axonopodis pv. citri str. 306] gi|292600447|gb|EFF44545.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292605647|gb|EFF48957.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 221 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 54/98 (55%), Gaps = 11/98 (11%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQEL 73 +K + LGQ FLKL+ Q++HQDP +PM+ S + QLA FS ++ +N S + Sbjct: 21 AKKEDALGQADFLKLMTEQLQHQDPLKPMENSAFLGQLAQFSTVQGIGDLNTKVSNFSDS 80 Query: 74 LKSNNLAQASSYIGKNI--------TNADGSISGVVNA 103 + S+ + + ++ +G N+ +A GS GVV A Sbjct: 81 MNSDQVLKGAALVGHNVLVPSAQVAIDATGSAKGVVAA 118 >gi|94495412|ref|ZP_01301992.1| flagellar scaffolding protein [Sphingomonas sp. SKA58] gi|94424800|gb|EAT09821.1| flagellar scaffolding protein [Sphingomonas sp. SKA58] Length = 219 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 3/72 (4%) Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNN 78 T+ Q +FLKLL Q+++QDP EP+ +E V+Q+A + +MN+ L + L Sbjct: 28 TMDQASFLKLLTAQMQYQDPFEPVDNAEMVSQMATITNSSGIAEMNANLASIKQELTGTR 87 Query: 79 LAQASSYIGKNI 90 L A+S+IGK++ Sbjct: 88 LGDAASWIGKSM 99 >gi|84502383|ref|ZP_01000519.1| related to basal-body rod modification protein (FlgD) [Oceanicola batsensis HTCC2597] gi|84389195|gb|EAQ01992.1| related to basal-body rod modification protein (FlgD) [Oceanicola batsensis HTCC2597] Length = 221 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 7/70 (10%) Query: 27 AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQAS--- 83 +FLKLL Q+ +QDP EPM +S V+QLA SQ+EQS+Q N+ L+ + S LA A Sbjct: 30 SFLKLLTAQLTNQDPLEPMDSSTFVSQLAQLSQVEQSIQTNTHLESI--SGQLANAGLTS 87 Query: 84 --SYIGKNIT 91 IG+ ++ Sbjct: 88 DLGLIGREVS 97 >gi|292492362|ref|YP_003527801.1| flagellar hook capping protein [Nitrosococcus halophilus Nc4] gi|291580957|gb|ADE15414.1| flagellar hook capping protein [Nitrosococcus halophilus Nc4] Length = 226 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 11/90 (12%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNL 79 LG + FLKL+ TQ+ HQDP EPM S + Q+A F + + ++ +EL ++SN Sbjct: 30 LGLEQFLKLMTTQLNHQDPFEPMDNSTFLGQMAQFGTVSGIQDLQNSFKELSGSMQSNQA 89 Query: 80 AQASSYIGKNI--------TNADGSISGVV 101 QAS +G+++ A+GS+ G V Sbjct: 90 LQASGLVGRSVLVPSEFGALEAEGSLRGAV 119 >gi|218288301|ref|ZP_03492600.1| flagellar hook capping protein [Alicyclobacillus acidocaldarius LAA1] gi|258511378|ref|YP_003184812.1| flagellar hook capping protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|218241660|gb|EED08833.1| flagellar hook capping protein [Alicyclobacillus acidocaldarius LAA1] gi|257478104|gb|ACV58423.1| flagellar hook capping protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 159 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/114 (32%), Positives = 65/114 (57%), Gaps = 11/114 (9%) Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN-------STLQEL 73 +L ++ F++LL+TQ+++QDP P+ ++ +AQLA FS +E+ Q+ S +Q L Sbjct: 41 NSLNENDFMQLLVTQLQNQDPLNPVDNTQMLAQLAQFSALEEMTQVAQTDAQVLSAVQNL 100 Query: 74 LKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPIT 124 +L A S IG ++T D S + G V+++ ++ G I V+ T P+T Sbjct: 101 ESEMSLLMAHSLIGASVTVQDASGNQVQGTVSSVTMNQ-GTPQIVVNGTSYPLT 153 >gi|114777403|ref|ZP_01452400.1| Flagellar hook capping protein [Mariprofundus ferrooxydans PV-1] gi|114552185|gb|EAU54687.1| Flagellar hook capping protein [Mariprofundus ferrooxydans PV-1] Length = 221 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 49/72 (68%), Gaps = 5/72 (6%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA-- 82 +D FLKLL+ Q+++Q+P +P ++ +QLA F+ +EQ N+ LQ+L+ +++ +A Sbjct: 27 KDIFLKLLVAQMQNQNPLKPQDPTQMSSQLAQFNMVEQQTSSNALLQQLVDASSTQKATS 86 Query: 83 ---SSYIGKNIT 91 +SY+GKN+T Sbjct: 87 SNGASYLGKNVT 98 >gi|254496886|ref|ZP_05109734.1| flagellar basal body rod modification protein [Legionella drancourtii LLAP12] gi|254353905|gb|EET12592.1| flagellar basal body rod modification protein [Legionella drancourtii LLAP12] Length = 224 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 47/73 (64%), Gaps = 3/73 (4%) Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77 K LGQ FL+L++ QI++QDP +P E ++QLA FS + +M ++Q++ L+SN Sbjct: 25 KNLGQQDFLRLMVAQIQNQDPMQPQVNGEFLSQLAQFSTNDGVSKMQESMQQMANSLQSN 84 Query: 78 NLAQASSYIGKNI 90 QAS+ +G+ + Sbjct: 85 QALQASALVGRKV 97 >gi|220934393|ref|YP_002513292.1| flagellar hook capping protein [Thioalkalivibrio sp. HL-EbGR7] gi|219995703|gb|ACL72305.1| flagellar hook capping protein [Thioalkalivibrio sp. HL-EbGR7] Length = 226 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 66/125 (52%), Gaps = 8/125 (6%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVF---S 58 +I ++ T E + +K LGQ FL+L+ITQ+++QDP +PM++ E + QLA F S Sbjct: 10 DIMNKLGLTSHETANTKGDDRLGQSDFLRLMITQLENQDPFKPMESGEFLGQLAQFGTVS 69 Query: 59 QMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSI-----SGVVNAIQVSSTGLTA 113 +E + + + + S QA++ + +++T I G+ A+QV ++ Sbjct: 70 GIEDLQKSFNRFSQSIASGQALQAAALVDRHVTVPGDMIIMDPAEGMRGAVQVPASAEVV 129 Query: 114 ITVDN 118 I V N Sbjct: 130 IGVYN 134 >gi|289666046|ref|ZP_06487627.1| flagellar basal body rod modification protein [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289670505|ref|ZP_06491580.1| flagellar basal body rod modification protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 221 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/97 (34%), Positives = 52/97 (53%), Gaps = 11/97 (11%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---L 74 K + LGQ FLKL+ Q++HQDP +PM S + QLA FS ++ +N+ L + Sbjct: 22 KKEDALGQADFLKLMTEQLQHQDPLKPMDNSAFLGQLAQFSTVQGIGDLNTKFSNLSTSM 81 Query: 75 KSNNLAQASSYIGKNI--------TNADGSISGVVNA 103 S+ + + ++ +G N+ +A GS GVV A Sbjct: 82 SSDQVLKGAALVGHNVLVPSAQVAIDATGSAKGVVAA 118 >gi|114799290|ref|YP_758991.1| putative basal-body rod modification protein FlgD [Hyphomonas neptunium ATCC 15444] gi|114739464|gb|ABI77589.1| putative basal-body rod modification protein FlgD [Hyphomonas neptunium ATCC 15444] Length = 216 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 46/71 (64%), Gaps = 3/71 (4%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82 ++F+KLL Q+++QDP PM +++ V QLA FS +EQ V N S++ ++ N A Sbjct: 28 NSFIKLLTAQVRNQDPMSPMDSTQFVEQLATFSSLEQLVNSNTALSSIASMIGDLNGLMA 87 Query: 83 SSYIGKNITNA 93 S ++G+++T A Sbjct: 88 SQWLGEDVTFA 98 >gi|154174409|ref|YP_001407312.1| flagellar basal body rod modification protein [Campylobacter curvus 525.92] gi|112803496|gb|EAU00840.1| flagellar hook assembly protein [Campylobacter curvus 525.92] Length = 235 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 55/89 (61%), Gaps = 3/89 (3%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNL 79 L +DAF+KLL+T++++QDPT PM + + Q + + +E NST+++L L+SN Sbjct: 39 LDKDAFMKLLLTELQYQDPTSPMDTEKMLTQTSQLAALEMQENTNSTMRQLVAQLQSNAN 98 Query: 80 AQASSYIGKNITNADGSISGVVNAIQVSS 108 A A S +GK ++ +++ + ++SS Sbjct: 99 AYAISALGKMVSTGSNAVNITDDTKEISS 127 >gi|288962682|ref|YP_003452976.1| flagellar basal-body rod modification protein [Azospirillum sp. B510] gi|288914948|dbj|BAI76432.1| flagellar basal-body rod modification protein [Azospirillum sp. B510] Length = 232 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 28/74 (37%), Positives = 48/74 (64%), Gaps = 3/74 (4%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKS 76 K T+ ++FLKLL Q+++QDP PM A++ + QLA S +EQS++ N TL ++ LKS Sbjct: 36 KATVDYESFLKLLTAQLRNQDPLAPMDATQFMTQLAQLSTVEQSMRSNDTLGKVLDTLKS 95 Query: 77 NNLAQASSYIGKNI 90 + + + +G+ + Sbjct: 96 SGMRMDMALLGRKV 109 >gi|149202209|ref|ZP_01879182.1| Flagellar scaffolding protein FlgD [Roseovarius sp. TM1035] gi|149144307|gb|EDM32338.1| Flagellar scaffolding protein FlgD [Roseovarius sp. TM1035] Length = 225 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/105 (33%), Positives = 59/105 (56%), Gaps = 15/105 (14%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNL 79 LGQ FL L+ Q+++QDP PM+ E +AQ+A FS + ++N+TL ++ + N + Sbjct: 32 LGQQDFLALMTAQLQNQDPFAPMENGEFLAQMAQFSTVAGLDRVNTTLSDIGSQIGGNRI 91 Query: 80 AQASSYIGKNI--------TNADGSISGVVNAIQVSSTGLTAITV 116 A ASS +G+ + +A G + GV + + +S A+TV Sbjct: 92 ATASSLLGQQVLVPGSLARPDASGGVHGVADLPEAAS----AVTV 132 >gi|90411004|ref|ZP_01219018.1| flagellar basal body rod modification protein [Photobacterium profundum 3TCK] gi|90328217|gb|EAS44528.1| flagellar basal body rod modification protein [Photobacterium profundum 3TCK] Length = 238 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/98 (34%), Positives = 54/98 (55%), Gaps = 11/98 (11%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQ 71 SK + L QD FL LL Q+ QDP +P+ + +AQ+A F+ ++ QMN +L Sbjct: 31 SKVTGQNELKQDDFLSLLTKQLAQQDPFKPVGNDQMIAQMASFATVDGINQMNEQFGSLN 90 Query: 72 ELLKSNNLAQASSYIGKN--------ITNADGSISGVV 101 + S+ QASS +G++ + NA+G I+G+V Sbjct: 91 SAMTSSQALQASSLVGRDVLIPGATGVKNAEGGITGMV 128 >gi|166712063|ref|ZP_02243270.1| flagellar basal body rod modification protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 221 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/97 (32%), Positives = 55/97 (56%), Gaps = 11/97 (11%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---L 74 K +++LGQ FLKL+ Q++HQDP +PM+ S + QLA FS ++ +N+ + + Sbjct: 22 KKEESLGQADFLKLMTEQLQHQDPLKPMENSAFLGQLAQFSTVQGIGDLNTKVSNFSTSM 81 Query: 75 KSNNLAQASSYIGKNI--------TNADGSISGVVNA 103 S+ + + ++ +G N+ +A GS GVV A Sbjct: 82 SSDQVLKGAALVGHNVLVPSAQVAIDATGSAKGVVAA 118 >gi|313901444|ref|ZP_07834902.1| flagellar hook capping protein [Thermaerobacter subterraneus DSM 13965] gi|313468294|gb|EFR63750.1| flagellar hook capping protein [Thermaerobacter subterraneus DSM 13965] Length = 154 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 9/94 (9%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74 S L DAF +LL Q+++QDP +PM+ + VAQLA +Q+E++ + + L L Sbjct: 27 SGPGGPGGLAPDAFFRLLAAQLRYQDPLQPMQDTAFVAQLAQLTQLEETRALRAALSGL- 85 Query: 75 KSNNLAQASSYIGKN--ITNADGSISGVVNAIQV 106 A +G+ IT A G+ +G V +++ Sbjct: 86 ------SALPLLGRTVEITTAQGTRTGTVTGVRM 113 >gi|283955492|ref|ZP_06372987.1| flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni 1336] gi|283792953|gb|EFC31727.1| flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni 1336] Length = 292 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 40/55 (72%) Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 TL +DAFLKLL+ +++HQDPT+PM + + + Q + S +E N+T+Q+++++ Sbjct: 46 TLDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVET 100 >gi|114762150|ref|ZP_01441618.1| Possible FlgD protein [Pelagibaca bermudensis HTCC2601] gi|114545174|gb|EAU48177.1| Possible FlgD protein [Roseovarius sp. HTCC2601] Length = 224 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 45/73 (61%), Gaps = 4/73 (5%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQASS 84 FLK+L TQ+++QDP P+ +++ QLA FS +EQ V N L +L + L Q S Sbjct: 39 FLKMLTTQMQNQDPLNPVDSTDYATQLATFSSVEQQVLTNDLLGDLAQAMTGGTLQQLGS 98 Query: 85 YIGKNITNADGSI 97 +IG+++ AD ++ Sbjct: 99 WIGRDVL-ADAAV 110 >gi|120597304|ref|YP_961878.1| flagellar hook capping protein [Shewanella sp. W3-18-1] gi|146294551|ref|YP_001184975.1| flagellar hook capping protein [Shewanella putrefaciens CN-32] gi|120557397|gb|ABM23324.1| flagellar hook capping protein [Shewanella sp. W3-18-1] gi|145566241|gb|ABP77176.1| flagellar hook capping protein [Shewanella putrefaciens CN-32] Length = 220 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 49/68 (72%), Gaps = 3/68 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME--QSVQMNSTLQELLKSN-NLAQ 81 ++ F+ L+I QIK+QDPT+P+ ++E ++QLA FSQ+E + ++ N + Q ++ N + Q Sbjct: 29 KNEFMTLMIAQIKNQDPTKPLNSAEYISQLAQFSQVESLEGMRKNQSNQMIMMENLGIVQ 88 Query: 82 ASSYIGKN 89 ++S IGKN Sbjct: 89 SASLIGKN 96 >gi|317121821|ref|YP_004101824.1| flagellar hook capping protein [Thermaerobacter marianensis DSM 12885] gi|315591801|gb|ADU51097.1| flagellar hook capping protein [Thermaerobacter marianensis DSM 12885] Length = 183 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 5/81 (6%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSY 85 DAF +LL Q+++QDP +P++ + VAQLA +Q+E++ + +T+ L L +A + Sbjct: 72 DAFFRLLAAQLRYQDPLQPLQDTAFVAQLAQLTQLEETRALRATVSGLAALPLLGRAVA- 130 Query: 86 IGKNITNADGSISGVVNAIQV 106 +T ADG G V +++ Sbjct: 131 ----VTTADGEQQGTVTGVRL 147 >gi|296531798|ref|ZP_06894614.1| flagellar basal body rod modification protein FlgD [Roseomonas cervicalis ATCC 49957] gi|296267872|gb|EFH13683.1| flagellar basal body rod modification protein FlgD [Roseomonas cervicalis ATCC 49957] Length = 231 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 44/69 (63%), Gaps = 4/69 (5%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS----NNLAQ 81 D FLKLL Q++ QDP P ++ VAQLA FSQ+EQ + N+ LQ + ++ +LA+ Sbjct: 36 DRFLKLLTAQLRFQDPMSPTDPTQFVAQLAQFSQVEQQTKTNALLQGIAETLSGQASLAE 95 Query: 82 ASSYIGKNI 90 ++ +GK + Sbjct: 96 NAALLGKAV 104 >gi|118593644|ref|ZP_01551020.1| flagellar hook capping protein [Stappia aggregata IAM 12614] gi|118433755|gb|EAV40416.1| flagellar hook capping protein [Stappia aggregata IAM 12614] Length = 219 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 4/72 (5%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQASS 84 FL +L TQI++QDP +P+ ++E QL +S +EQ+++ N L+E+ L SN S Sbjct: 30 FLSILTTQIQNQDPLDPLDSAEYTNQLVQYSSVEQAIKQNQNLEEIIASLTSNQSMGYVS 89 Query: 85 YIGKNITNADGS 96 YIG +T AD S Sbjct: 90 YIGNEVT-ADAS 100 >gi|78485813|ref|YP_391738.1| flagellar hook capping protein [Thiomicrospira crunogena XCL-2] gi|78364099|gb|ABB42064.1| Flagellar hook capping protein FlgD [Thiomicrospira crunogena XCL-2] Length = 227 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 46/71 (64%), Gaps = 3/71 (4%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNL 79 LGQ FL+LL TQ+++QDP +PM + V L SQ+E + +MN ++ + L++ + Sbjct: 32 LGQADFLRLLTTQLQNQDPNKPMDPTNFVTDLTQMSQLEATTKMNQSMLAMTTGLQNMQV 91 Query: 80 AQASSYIGKNI 90 Q++S IGKN+ Sbjct: 92 MQSASLIGKNV 102 >gi|310659038|ref|YP_003936759.1| flagellar hook capping protein [Clostridium sticklandii DSM 519] gi|308825816|emb|CBH21854.1| Flagellar hook capping protein [Clostridium sticklandii] Length = 128 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 6/72 (8%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 TE N T+Q S+ LG+DAFL+LL TQ+ HQDP P E ++Q+A FS +EQ Sbjct: 19 TEKNYTRQVNSE------LGKDAFLRLLTTQLSHQDPLNPTDDKEFLSQMASFSSLEQMQ 72 Query: 65 QMNSTLQELLKS 76 +N++ L K+ Sbjct: 73 NLNTSFAGLDKT 84 >gi|90415319|ref|ZP_01223253.1| flagellar basal body rod modification protein [marine gamma proteobacterium HTCC2207] gi|90332642|gb|EAS47812.1| flagellar basal body rod modification protein [marine gamma proteobacterium HTCC2207] Length = 228 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 52/92 (56%), Gaps = 3/92 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 ++E + + + LGQDAFL L Q+++Q+P +PM V+QLA FS +E M +L Sbjct: 18 EKENAVAYGEDELGQDAFLTLFTAQLQNQNPLDPMDNEAFVSQLAEFSSLEGIKGMQGSL 77 Query: 71 QEL---LKSNNLAQASSYIGKNITNADGSISG 99 + ++ + + ++ +GK + A G+ +G Sbjct: 78 DNMVNGMRQDQMVAGANLVGKKVQVAGGNFTG 109 >gi|83944158|ref|ZP_00956614.1| flagellar hook assembly protein FlgD [Sulfitobacter sp. EE-36] gi|83845025|gb|EAP82906.1| flagellar hook assembly protein FlgD [Sulfitobacter sp. EE-36] Length = 223 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 28/53 (52%), Positives = 39/53 (73%), Gaps = 2/53 (3%) Query: 23 LGQDA--FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73 LG+D FL LL QI++QDP EP+ +++ VAQLA SQ+EQ+VQ N+ L+ L Sbjct: 26 LGEDYTKFLTLLTAQIQNQDPLEPVDSTQFVAQLAQLSQVEQAVQTNTQLETL 78 >gi|253996320|ref|YP_003048384.1| flagellar hook capping protein [Methylotenera mobilis JLW8] gi|253982999|gb|ACT47857.1| flagellar hook capping protein [Methylotenera mobilis JLW8] Length = 224 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 46/69 (66%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA---Q 81 QD F+KLL+TQ+++QDP PM ++ +Q+A S + ++N+TL+ L+ + + Q Sbjct: 33 QDRFMKLLVTQMRNQDPLNPMDNAQVTSQMAQLSTVTGIDKLNNTLETLINNVQMGQSYQ 92 Query: 82 ASSYIGKNI 90 AS+ IG+NI Sbjct: 93 ASNMIGRNI 101 >gi|153952103|ref|YP_001397314.1| flagellar basal body rod modification protein [Campylobacter jejuni subsp. doylei 269.97] gi|152939549|gb|ABS44290.1| flagellar hook assembly protein [Campylobacter jejuni subsp. doylei 269.97] Length = 287 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 40/55 (72%) Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 TL +DAFLKLL+ +++HQDPT+PM + + + Q + S +E N+T+Q+++++ Sbjct: 46 TLDKDAFLKLLLVELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVET 100 >gi|71906390|ref|YP_283977.1| flagellar hook capping protein [Dechloromonas aromatica RCB] gi|71846011|gb|AAZ45507.1| Flagellar hook capping protein [Dechloromonas aromatica RCB] Length = 229 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 27/58 (46%), Positives = 38/58 (65%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82 QD+FL +L TQ+K+QDP PM ++ +QLA S +E +N+TL LL S N +QA Sbjct: 37 QDSFLTMLTTQLKNQDPLNPMDNAQMTSQLAQISTLEGIQGLNTTLTSLLSSYNTSQA 94 >gi|325918876|ref|ZP_08180953.1| flagellar hook capping protein [Xanthomonas vesicatoria ATCC 35937] gi|325534913|gb|EGD06832.1| flagellar hook capping protein [Xanthomonas vesicatoria ATCC 35937] Length = 223 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 36/105 (34%), Positives = 55/105 (52%), Gaps = 11/105 (10%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69 T S K +++LGQ FLKL+ Q++HQDP +PM+ S + QLA FS ++ +N+ Sbjct: 16 TSSAASTKKKEESLGQADFLKLMTEQLQHQDPLKPMENSAFLGQLAQFSTVQGIGDLNTK 75 Query: 70 LQELLKSNNLAQ---ASSYIGKNI--------TNADGSISGVVNA 103 + S N Q ++ +G N+ +A GS GVV A Sbjct: 76 VGNFSDSMNADQVLKGAALVGHNVLVPSAQLAIDATGSAKGVVAA 120 >gi|83955142|ref|ZP_00963798.1| flagellar hook assembly protein FlgD [Sulfitobacter sp. NAS-14.1] gi|83840471|gb|EAP79644.1| flagellar hook assembly protein FlgD [Sulfitobacter sp. NAS-14.1] Length = 223 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 28/53 (52%), Positives = 39/53 (73%), Gaps = 2/53 (3%) Query: 23 LGQDA--FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73 LG+D FL LL QI++QDP EP+ +++ VAQLA SQ+EQ+VQ N+ L+ L Sbjct: 26 LGEDYTKFLTLLTAQIQNQDPLEPVDSTQFVAQLAQLSQVEQAVQTNTQLETL 78 >gi|85706208|ref|ZP_01037303.1| Possible FlgD protein [Roseovarius sp. 217] gi|85669372|gb|EAQ24238.1| Possible FlgD protein [Roseovarius sp. 217] Length = 230 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 37/114 (32%), Positives = 60/114 (52%), Gaps = 15/114 (13%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQASS 84 FLK+L TQ+++QDP P+++S+ QLA FS +EQ V N L +L + + L+Q S Sbjct: 41 FLKMLTTQLRNQDPLNPIESSDFAVQLATFSTVEQQVLTNDLLTDLGARIGAQGLSQVSG 100 Query: 85 YIG-KNITNADGSISGV-----------VNAIQVSSTGLTAITVDNTEIPITTG 126 +IG + ++ + SG A ++ +T I V+ IP T+G Sbjct: 101 WIGMEALSELPVTFSGEPVSLLATVDPQAEAAEIVATNAQGIIVNRQPIPTTSG 154 >gi|331005438|ref|ZP_08328817.1| Flagellar basal-body rod modification protein FlgD [gamma proteobacterium IMCC1989] gi|330420714|gb|EGG95001.1| Flagellar basal-body rod modification protein FlgD [gamma proteobacterium IMCC1989] Length = 136 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 37/113 (32%), Positives = 60/113 (53%), Gaps = 2/113 (1%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79 + + Q+ FL++L+ Q+ +QDP EP+ SE ++Q A + + Q+ N L LL ++ Sbjct: 17 RAGIDQEDFLQVLLAQLNYQDPLEPVDNSEFISQFAELTTLTQTQSSNDKLDSLLTIQSV 76 Query: 80 AQASSYIGKNI-TNADGSIS-GVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 QA IGK + N+ GS + G V I SS G +TV + G+ +S Sbjct: 77 NQAVQLIGKTVEVNSSGSDTIGQVTTITFSSEGTPQMTVLRDDGGFINGVGLS 129 >gi|126176157|ref|YP_001052306.1| flagellar hook capping protein [Shewanella baltica OS155] gi|125999362|gb|ABN63437.1| flagellar hook capping protein [Shewanella baltica OS155] Length = 220 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 28/65 (43%), Positives = 47/65 (72%), Gaps = 3/65 (4%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME--QSVQMNSTLQELLKSN-NLAQASS 84 F+ L+I QIK+QDPT+P+ ++E ++QLA FSQ+E + ++ N + Q ++ N + Q++S Sbjct: 32 FMTLMIAQIKNQDPTKPLNSAEYISQLAQFSQVESLEGMRKNQSNQMVMMENLGIVQSAS 91 Query: 85 YIGKN 89 IGKN Sbjct: 92 LIGKN 96 >gi|304412509|ref|ZP_07394115.1| flagellar hook capping protein [Shewanella baltica OS183] gi|307307168|ref|ZP_07586906.1| flagellar hook capping protein [Shewanella baltica BA175] gi|304349151|gb|EFM13563.1| flagellar hook capping protein [Shewanella baltica OS183] gi|306910407|gb|EFN40838.1| flagellar hook capping protein [Shewanella baltica BA175] Length = 220 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 28/65 (43%), Positives = 47/65 (72%), Gaps = 3/65 (4%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME--QSVQMNSTLQELLKSN-NLAQASS 84 F+ L+I QIK+QDPT+P+ ++E ++QLA FSQ+E + ++ N + Q ++ N + Q++S Sbjct: 32 FMTLMIAQIKNQDPTKPLNSAEYISQLAQFSQVESLEGMRKNQSNQMVMMENLGIVQSAS 91 Query: 85 YIGKN 89 IGKN Sbjct: 92 LIGKN 96 >gi|302878275|ref|YP_003846839.1| flagellar hook capping protein [Gallionella capsiferriformans ES-2] gi|302581064|gb|ADL55075.1| flagellar hook capping protein [Gallionella capsiferriformans ES-2] Length = 227 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 44/69 (63%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS---NNLAQ 81 QD F+KLL+TQ+K+QDP PM ++ +Q+A S + ++N+TLQ L S N Q Sbjct: 36 QDRFMKLLVTQLKNQDPLNPMDNAQMTSQMAQISTVSGIDKLNATLQALSASMTPNQTLQ 95 Query: 82 ASSYIGKNI 90 A++ IG+ + Sbjct: 96 AATMIGRGV 104 >gi|205373382|ref|ZP_03226186.1| flagellar basal body rod modification protein [Bacillus coahuilensis m4-4] Length = 94 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 23/48 (47%), Positives = 37/48 (77%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 LGQDAF+K+L+ ++++QDP PM+ + +AQLA FSQ+E+ M+ +L Sbjct: 25 LGQDAFMKILMAELQNQDPMNPMQDKDFIAQLATFSQLEELTGMSDSL 72 >gi|159045905|ref|YP_001534699.1| flagellar basal body rod modification protein [Dinoroseobacter shibae DFL 12] gi|157913665|gb|ABV95098.1| flagellar hook capping protein FlgD [Dinoroseobacter shibae DFL 12] Length = 220 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 28/75 (37%), Positives = 50/75 (66%), Gaps = 4/75 (5%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQA 82 + FL++L TQ+++QDP EP+ + + QLA FS +EQ Q NS L++L + +L+Q Sbjct: 29 ETFLRMLTTQLENQDPLEPVASQDLAVQLATFSGVEQQTQTNSLLEDLGSQMGLMSLSQL 88 Query: 83 SSYIGKNITNADGSI 97 +S++G + A+G++ Sbjct: 89 ASWVGMDAL-AEGNV 102 >gi|57169038|ref|ZP_00368166.1| probable flagellar hook assembly protein Cj0042 [Campylobacter coli RM2228] gi|57019583|gb|EAL56273.1| probable flagellar hook assembly protein Cj0042 [Campylobacter coli RM2228] Length = 287 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 40/55 (72%) Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 TL +DAFLKLL+ +++HQDPT+PM + + + Q + S +E N+T+Q+++++ Sbjct: 45 TLDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVET 99 >gi|218886712|ref|YP_002436033.1| flagellar hook capping protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757666|gb|ACL08565.1| flagellar hook capping protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 222 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 45/68 (66%), Gaps = 3/68 (4%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST---LQELLKSNNLAQA 82 DAFL+LLI ++++QDPT P +E + Q+A FS +EQ +N T + + L + +L A Sbjct: 26 DAFLQLLIAELQNQDPTNPTDNTEMINQIASFSTVEQLSALNDTATSIYDSLTAMSLNSA 85 Query: 83 SSYIGKNI 90 S+IG+++ Sbjct: 86 VSFIGQSV 93 >gi|254470066|ref|ZP_05083470.1| flagellar hook capping protein [Pseudovibrio sp. JE062] gi|211960377|gb|EEA95573.1| flagellar hook capping protein [Pseudovibrio sp. JE062] Length = 218 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 13/105 (12%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE---LLKSNNLAQA 82 D F+ LL TQI++QDP EP+ +SE QL ++ +EQ V L E LK+ + +Q Sbjct: 27 DLFISLLTTQIQNQDPLEPLDSSEYTNQLVQYTMVEQQVATTEKLDEQLTQLKTQSASQF 86 Query: 83 SSYIGKNITN-------ADGSISGVVNAIQVSSTGLTAITVDNTE 120 +YIGK +T D S ++A+ S G +T+ N+E Sbjct: 87 VNYIGKEVTAQSSTAQLKDDKASWNLDAV---SAGKATVTIKNSE 128 >gi|21231398|ref|NP_637315.1| flagellar basal body rod modification protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768549|ref|YP_243311.1| flagellar basal body rod modification protein [Xanthomonas campestris pv. campestris str. 8004] gi|188991642|ref|YP_001903652.1| flagellar basal body rod modification protein [Xanthomonas campestris pv. campestris str. B100] gi|21113064|gb|AAM41239.1| flagellar protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573881|gb|AAY49291.1| flagellar protein [Xanthomonas campestris pv. campestris str. 8004] gi|167733402|emb|CAP51603.1| unnamed protein product [Xanthomonas campestris pv. campestris] Length = 221 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 32/98 (32%), Positives = 54/98 (55%), Gaps = 11/98 (11%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--- 73 +K + LGQ FLKL+ Q++HQDP +PM+ S + QLA FS ++ +N+ + Sbjct: 21 AKKEDALGQADFLKLMTEQLQHQDPLKPMENSAFLGQLAQFSTVQGIGDLNTKVGNFSDS 80 Query: 74 LKSNNLAQASSYIGKNI--------TNADGSISGVVNA 103 + S+ + + ++ +G N+ +A GS GVV A Sbjct: 81 MNSDQVLKGAALVGHNVLVPSAQVAIDATGSAKGVVAA 118 >gi|305432528|ref|ZP_07401690.1| flagellar hook assembly protein [Campylobacter coli JV20] gi|304444567|gb|EFM37218.1| flagellar hook assembly protein [Campylobacter coli JV20] Length = 286 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 41/58 (70%) Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79 TL +DAFLKLL+ +++HQDPT+PM + + + Q + S +E N+T+Q+++++ L Sbjct: 44 TLDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVETMQL 101 >gi|194365681|ref|YP_002028291.1| flagellar basal body rod modification protein [Stenotrophomonas maltophilia R551-3] gi|194348485|gb|ACF51608.1| flagellar hook capping protein [Stenotrophomonas maltophilia R551-3] Length = 227 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 63/115 (54%), Gaps = 16/115 (13%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST---LQEL 73 +K K TL Q FL+L+ Q++HQDP +PM ++ VAQ+A S ++ +N T QE Sbjct: 27 TKKKNTLDQADFLRLMTEQLQHQDPLKPMDNTQMVAQMAQMSTVQGITDLNKTVKGFQES 86 Query: 74 LKSNNLAQASSYIG--------KNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120 + S+ + + ++ +G K + +G++ G V A + G+ +TVD T+ Sbjct: 87 MASDQVLRGAALVGHEVLVPSEKLVLEKEGTVEGTVAA---PAAGI--VTVDITD 136 >gi|315926888|gb|EFV06254.1| flagellar hook capping family protein [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315926905|gb|EFV06271.1| flagellar hook capping family protein [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 294 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 40/55 (72%) Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 TL +DAFLKLL+ +++HQDPT+PM + + + Q + S +E N+T+Q+++++ Sbjct: 45 TLDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVET 99 >gi|157414367|ref|YP_001481623.1| flagellar basal body rod modification protein [Campylobacter jejuni subsp. jejuni 81116] gi|157385331|gb|ABV51646.1| putative flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni 81116] gi|307747009|gb|ADN90279.1| Flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni M1] gi|315931631|gb|EFV10596.1| flagellar hook capping family protein [Campylobacter jejuni subsp. jejuni 327] Length = 294 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 40/55 (72%) Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 TL +DAFLKLL+ +++HQDPT+PM + + + Q + S +E N+T+Q+++++ Sbjct: 45 TLDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVET 99 >gi|57237056|ref|YP_178068.1| flagellar basal body rod modification protein [Campylobacter jejuni RM1221] gi|86149626|ref|ZP_01067856.1| flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni CF93-6] gi|86151430|ref|ZP_01069645.1| flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni 260.94] gi|86154065|ref|ZP_01072266.1| flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni HB93-13] gi|88597673|ref|ZP_01100906.1| flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni 84-25] gi|121613172|ref|YP_999768.1| flagellar basal body rod modification protein [Campylobacter jejuni subsp. jejuni 81-176] gi|148926856|ref|ZP_01810534.1| putative flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni CG8486] gi|167004742|ref|ZP_02270500.1| putative flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni 81-176] gi|205356433|ref|ZP_03223197.1| flagellar hook protein flgE [Campylobacter jejuni subsp. jejuni CG8421] gi|218561734|ref|YP_002343513.1| flagellar basal body rod modification protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|315123657|ref|YP_004065661.1| putative flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|57165860|gb|AAW34639.1| flagellar hook assembly protein [Campylobacter jejuni RM1221] gi|85839894|gb|EAQ57153.1| flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni CF93-6] gi|85841777|gb|EAQ59024.1| flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni 260.94] gi|85842479|gb|EAQ59693.1| flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni HB93-13] gi|87248965|gb|EAQ71927.1| flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni 81-176] gi|88189977|gb|EAQ93953.1| flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni 84-25] gi|112359440|emb|CAL34222.1| putative flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|145844433|gb|EDK21541.1| putative flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni CG8486] gi|205345620|gb|EDZ32259.1| flagellar hook protein flgE [Campylobacter jejuni subsp. jejuni CG8421] gi|315017379|gb|ADT65472.1| putative flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315057483|gb|ADT71812.1| Flagellar basal-body rod modification protein FlgD [Campylobacter jejuni subsp. jejuni S3] gi|315929147|gb|EFV08372.1| flagellar hook capping family protein [Campylobacter jejuni subsp. jejuni 305] Length = 294 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 40/55 (72%) Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 TL +DAFLKLL+ +++HQDPT+PM + + + Q + S +E N+T+Q+++++ Sbjct: 45 TLDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVET 99 >gi|171320707|ref|ZP_02909720.1| flagellar hook capping protein [Burkholderia ambifaria MEX-5] gi|171094034|gb|EDT39132.1| flagellar hook capping protein [Burkholderia ambifaria MEX-5] Length = 135 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 50/80 (62%), Gaps = 2/80 (2%) Query: 27 AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYI 86 + L++++TQ+ +QDP +P+ E V+QLA F+ +EQS Q+ + + +LL + Q + Sbjct: 25 SLLRIIVTQLTYQDPLKPVDNYEFVSQLAQFTSLEQSRQIAAKIDDLLSVQSATQTIGLL 84 Query: 87 GK--NITNADGSISGVVNAI 104 G+ +I G+++G+V + Sbjct: 85 GRKVDIRGDAGTMTGIVKGV 104 >gi|256376466|ref|YP_003100126.1| flagellar hook capping protein [Actinosynnema mirum DSM 43827] gi|255920769|gb|ACU36280.1| flagellar hook capping protein [Actinosynnema mirum DSM 43827] Length = 139 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 35/110 (31%), Positives = 63/110 (57%), Gaps = 11/110 (10%) Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ---ELLKSNN 78 +LG DAFLKLL+ Q+K+QDP+ P ++ +AQ A + ++ ++NS Q +L+ S Sbjct: 27 SLGGDAFLKLLVAQLKYQDPSNPTDSTAFMAQTAQLTSVD---KLNSIAQQQTQLVASQL 83 Query: 79 LAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITT 125 AQA+ +G+ +T S SG+V++ S + V ++P+++ Sbjct: 84 SAQAAGLVGREVTYTTASGERASGIVSSTTFGSA--PTLRVGAVDVPLSS 131 >gi|222095376|ref|YP_002529436.1| flagellar basal body rod modification protein [Bacillus cereus Q1] gi|221239434|gb|ACM12144.1| basal-body rod modification protein [Bacillus cereus Q1] Length = 192 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 6/120 (5%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASE---QVAQLAVFSQMEQSVQMNSTLQELL 74 K+ +G+D FLKL + +HQDP M ++ Q AQL++ Q++ + LQ + Sbjct: 46 KTPGVMGKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDKLQSTM 105 Query: 75 KSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 S L ++GK + DG ++G V ++++ + +DN + + R+S+ Sbjct: 106 YSTALDGGMKFLGKYVRGVDGDGKKVTGQVETVRLAENNEVQLVIDNKVVSLRFVERVSD 165 >gi|91794996|ref|YP_564647.1| flagellar hook capping protein [Shewanella denitrificans OS217] gi|91716998|gb|ABE56924.1| flagellar hook capping protein [Shewanella denitrificans OS217] Length = 220 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 51/70 (72%), Gaps = 3/70 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME--QSVQMNSTLQELLKSN-NLAQ 81 ++ F+ L+I QIK+QDPT+P++++E V+QLA FSQ+E + ++ N + Q ++ N + Q Sbjct: 29 KNEFMTLMIAQIKNQDPTKPIESAEYVSQLAQFSQVESLEYMRKNQSSQMVMMENLGIVQ 88 Query: 82 ASSYIGKNIT 91 ++S IGK+ T Sbjct: 89 SASLIGKSAT 98 >gi|324325770|gb|ADY21030.1| flagellar basal body rod modification protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 192 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 6/120 (5%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASE---QVAQLAVFSQMEQSVQMNSTLQELL 74 K+ +G+D FLKL + +HQDP M ++ Q AQL++ Q++ + LQ + Sbjct: 46 KTPGVMGKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDKLQSTM 105 Query: 75 KSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 S L ++GK + DG ++G V ++++ + +DN + + R+S+ Sbjct: 106 YSTALDGGMKFLGKYVRGVDGDGKKVTGQVETVRLAENNEVQLVIDNKVVSLRFVERVSD 165 >gi|168182739|ref|ZP_02617403.1| flagellar hook capping protein [Clostridium botulinum Bf] gi|237796096|ref|YP_002863648.1| flagellar hook capping protein [Clostridium botulinum Ba4 str. 657] gi|182674115|gb|EDT86076.1| flagellar hook capping protein [Clostridium botulinum Bf] gi|229261576|gb|ACQ52609.1| flagellar hook capping protein [Clostridium botulinum Ba4 str. 657] Length = 265 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 7/71 (9%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77 K + L ++AF K+L ++ +QDPT +E V+QLA FS +EQ +NS ++ Sbjct: 48 KKGQDLDKNAFFKILAAELANQDPTNAKDGTEYVSQLAQFSSLEQMANLNSMMK------ 101 Query: 78 NLAQASSYIGK 88 L ASS+IGK Sbjct: 102 -LTGASSFIGK 111 >gi|146281770|ref|YP_001171923.1| basal-body rod modification protein FlgD [Pseudomonas stutzeri A1501] gi|145569975|gb|ABP79081.1| basal-body rod modification protein FlgD [Pseudomonas stutzeri A1501] Length = 226 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 48/77 (62%), Gaps = 3/77 (3%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNL 79 LG+ F+ LL+TQ+ +Q+P +P SE VAQLA FS +E +N+++ LL +S+ Sbjct: 29 LGKTDFMMLLVTQLNNQNPLDPQDNSEFVAQLAQFSSLESMENLNASMTSLLSTYQSSQA 88 Query: 80 AQASSYIGKNITNADGS 96 QA+S +G ++ GS Sbjct: 89 LQATSLVGSSVIVETGS 105 >gi|206975041|ref|ZP_03235956.1| flagellar hook assembly protein family protein [Bacillus cereus H3081.97] gi|229195965|ref|ZP_04322718.1| Flagellar hook assembly protein [Bacillus cereus m1293] gi|206747060|gb|EDZ58452.1| flagellar hook assembly protein family protein [Bacillus cereus H3081.97] gi|228587524|gb|EEK45589.1| Flagellar hook assembly protein [Bacillus cereus m1293] Length = 192 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 6/120 (5%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASE---QVAQLAVFSQMEQSVQMNSTLQELL 74 K+ +G+D FLKL ++ +HQDP M ++ Q AQL++ Q++ + LQ + Sbjct: 46 KTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDKLQSTM 105 Query: 75 KSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 S L ++GK + DG ++G V ++++ + +DN + + R+S+ Sbjct: 106 YSTALDGGMKFLGKYVRGIDGDGKKVTGQVETVRLAENNDVQLVIDNKVVSLRFVERVSD 165 >gi|144900943|emb|CAM77807.1| basal-body rod modification protein flgD precursor [Magnetospirillum gryphiswaldense MSR-1] Length = 220 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 7/90 (7%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS- 84 D F++LL Q+++QDP +P A+E QL +S +EQ + N L E+L S +L SS Sbjct: 27 DMFIQLLCAQLENQDPLDPTDATEFTNQLVQYSNLEQQMATNDKLDEVLSSIDLMSMSSG 86 Query: 85 --YIGKNITNADGSIS----GVVNAIQVSS 108 Y+G + +IS G V+A V S Sbjct: 87 VGYMGHTVEAEGDTISVQDDGTVDAAWVYS 116 >gi|313673417|ref|YP_004051528.1| flagellar hook capping protein [Calditerrivibrio nitroreducens DSM 19672] gi|312940173|gb|ADR19365.1| flagellar hook capping protein [Calditerrivibrio nitroreducens DSM 19672] Length = 222 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 11/86 (12%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN- 78 KK L +D FL L+ITQ+K+QDP PM +E +AQ S +EQ + + +L++ N Sbjct: 24 KKDLDKDDFLSLMITQLKNQDPLSPMNNNEFIAQTTQMSSLEQLIN----IAKLMEKQNA 79 Query: 79 ------LAQASSYIGKNITNADGSIS 98 L +S+IGKN++ S S Sbjct: 80 QSTESQLLSGASFIGKNVSYNGNSFS 105 >gi|300696912|ref|YP_003747573.1| flagellar hook assembly protein, basal-body rod modification [Ralstonia solanacearum CFBP2957] gi|299073636|emb|CBJ53156.1| flagellar hook assembly protein, basal-body rod modification [Ralstonia solanacearum CFBP2957] Length = 218 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 42/66 (63%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS 84 Q+ F++LL+ Q+K+QDP PM S+ +QLA + + Q+N+TL + + +QASS Sbjct: 30 QNTFMQLLVAQLKNQDPLNPMDNSQLTSQLAQINTVNGISQLNTTLSSMATQSAASQASS 89 Query: 85 YIGKNI 90 IG+ + Sbjct: 90 LIGRTV 95 >gi|207728345|ref|YP_002256739.1| basal-body rod modification protein flgd [Ralstonia solanacearum MolK2] gi|206591591|emb|CAQ57203.1| basal-body rod modification protein flgd [Ralstonia solanacearum MolK2] Length = 218 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 42/66 (63%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS 84 Q+ F++LL+ Q+K+QDP PM S+ +QLA + + Q+N+T+ + + +QASS Sbjct: 30 QNTFMQLLVAQLKNQDPLNPMDNSQLTSQLAQINTVNGIAQLNTTMSSMATQSAASQASS 89 Query: 85 YIGKNI 90 IG+ + Sbjct: 90 LIGRTV 95 >gi|148380614|ref|YP_001255155.1| flagellar hook capping protein [Clostridium botulinum A str. ATCC 3502] gi|153930937|ref|YP_001384900.1| flagellar hook capping protein [Clostridium botulinum A str. ATCC 19397] gi|153937540|ref|YP_001388369.1| flagellar hook capping protein [Clostridium botulinum A str. Hall] gi|170759186|ref|YP_001787977.1| flagellar hook capping protein [Clostridium botulinum A3 str. Loch Maree] gi|148290098|emb|CAL84217.1| putative flagellar hook assembly protein [Clostridium botulinum A str. ATCC 3502] gi|152926981|gb|ABS32481.1| flagellar hook capping protein [Clostridium botulinum A str. ATCC 19397] gi|152933454|gb|ABS38953.1| flagellar hook capping protein [Clostridium botulinum A str. Hall] gi|169406175|gb|ACA54586.1| flagellar hook capping protein [Clostridium botulinum A3 str. Loch Maree] Length = 265 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 7/71 (9%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77 K + L ++AF K+L ++ +QDPT +E V+QLA FS +EQ +NS ++ Sbjct: 48 KKGQDLDKNAFFKILAAELANQDPTNAKDGTEYVSQLAQFSSLEQMANLNSMMK------ 101 Query: 78 NLAQASSYIGK 88 L ASS+IGK Sbjct: 102 -LTGASSFIGK 111 >gi|300693337|ref|YP_003749310.1| flagellar hook assembly protein, basal-body rod modification [Ralstonia solanacearum PSI07] gi|299075374|emb|CBJ34669.1| flagellar hook assembly protein, basal-body rod modification [Ralstonia solanacearum PSI07] Length = 218 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 42/66 (63%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS 84 Q+ F++LL+ Q+K+QDP PM S+ +QLA + + Q+N+T+ + + +QASS Sbjct: 30 QNTFMQLLVAQLKNQDPLNPMDNSQLTSQLAQINTVNGIAQLNTTMSSMATQSAASQASS 89 Query: 85 YIGKNI 90 IG+ + Sbjct: 90 LIGRTV 95 >gi|253702501|ref|YP_003023690.1| flagellar hook capping protein [Geobacter sp. M21] gi|251777351|gb|ACT19932.1| flagellar hook capping protein [Geobacter sp. M21] Length = 221 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 7/77 (9%) Query: 20 KKTLG--QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL--- 74 KK+ G +D FLKL +TQ+++QDP P ++ ++QLA +Q+EQ+ NS LQ +L Sbjct: 19 KKSTGMNKDDFLKLFVTQLQNQDPLNPQDGTQFISQLAQLTQVEQAYNTNSNLQNMLNQG 78 Query: 75 -KSNNLAQASSYIGKNI 90 S LA A + IGK + Sbjct: 79 SNSATLA-AVTLIGKQV 94 >gi|217959236|ref|YP_002337784.1| flagellar basal body rod modification protein [Bacillus cereus AH187] gi|229138453|ref|ZP_04267042.1| Flagellar hook assembly protein [Bacillus cereus BDRD-ST26] gi|217062964|gb|ACJ77214.1| flagellar hook assembly protein family protein [Bacillus cereus AH187] gi|228644990|gb|EEL01233.1| Flagellar hook assembly protein [Bacillus cereus BDRD-ST26] Length = 192 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/120 (25%), Positives = 61/120 (50%), Gaps = 6/120 (5%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASE---QVAQLAVFSQMEQSVQMNSTLQELL 74 K+ +G+D FLKL ++ +HQDP M ++ Q AQL++ Q++ + +L+ + Sbjct: 46 KTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDSLRTTM 105 Query: 75 KSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 S L ++GK + DG ++G V ++++ + +DN + + R+S+ Sbjct: 106 YSTALDGGMKFLGKYVRGVDGDGKKVTGQVETVRLAENNEVQLVIDNKVVSLRFVERVSD 165 >gi|17548565|ref|NP_521905.1| basal-body rod modification protein FlgD [Ralstonia solanacearum GMI1000] gi|17430813|emb|CAD17495.1| probable basal-body rod modification protein flgd [Ralstonia solanacearum GMI1000] Length = 221 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 42/66 (63%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS 84 Q+ F++LL+ Q+K+QDP PM S+ +QLA + + Q+N+T+ + + +QASS Sbjct: 33 QNTFMQLLVAQLKNQDPLNPMDNSQLTSQLAQINTVNGIAQLNTTMSSMATQSAASQASS 92 Query: 85 YIGKNI 90 IG+ + Sbjct: 93 LIGRTV 98 >gi|327543122|gb|EGF29558.1| flagellar hook capping protein [Rhodopirellula baltica WH47] Length = 153 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 57/95 (60%), Gaps = 3/95 (3%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74 S ++ +L D+FLKLLI ++++QDP +P+ ++ V Q+ ++ + Q+ +TL +L Sbjct: 28 SANEGYNSLDVDSFLKLLINELQNQDPLDPVDNAQMVQQIGQIREIGATDQLTNTLSDLS 87 Query: 75 KSNNLAQASSYIGKNITN-AD--GSISGVVNAIQV 106 S L AS IG+ ++ AD + +GVV+ I V Sbjct: 88 NSQQLVTASGLIGRTVSGLADDQSNTTGVVDKITV 122 >gi|317152825|ref|YP_004120873.1| flagellar hook capping protein [Desulfovibrio aespoeensis Aspo-2] gi|316943076|gb|ADU62127.1| flagellar hook capping protein [Desulfovibrio aespoeensis Aspo-2] Length = 225 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 35/56 (62%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72 S + +LG FL LLITQ+++QDPTEP+ +E V Q+ FSQ+E + L E Sbjct: 23 STASTSLGSMDFLNLLITQLQYQDPTEPVDNTEMVNQMTQFSQLESLTSIEDKLDE 78 >gi|83747655|ref|ZP_00944691.1| FlgD [Ralstonia solanacearum UW551] gi|207739738|ref|YP_002258131.1| basal-body rod modification protein flgd [Ralstonia solanacearum IPO1609] gi|83725707|gb|EAP72849.1| FlgD [Ralstonia solanacearum UW551] gi|206593120|emb|CAQ60026.1| basal-body rod modification protein flgd [Ralstonia solanacearum IPO1609] Length = 218 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 42/66 (63%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS 84 Q+ F++LL+ Q+K+QDP PM S+ +QLA + + Q+N+T+ + + +QASS Sbjct: 30 QNTFMQLLVAQLKNQDPLNPMDNSQLTSQLAQINTVNGIAQLNTTMSSMATQSAASQASS 89 Query: 85 YIGKNI 90 IG+ + Sbjct: 90 LIGRTV 95 >gi|229029433|ref|ZP_04185516.1| Flagellar hook assembly protein [Bacillus cereus AH1271] gi|228731892|gb|EEL82791.1| Flagellar hook assembly protein [Bacillus cereus AH1271] Length = 192 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 6/120 (5%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASE---QVAQLAVFSQMEQSVQMNSTLQELL 74 K+ +G+D FLKL + +HQDP M ++ Q AQL++ Q++ + +L+ + Sbjct: 46 KTPGVMGKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDSLKSTM 105 Query: 75 KSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 S L ++GK + DG ++G V ++++ + +DN + + R+S+ Sbjct: 106 YSTALDGGMKFLGKYVRGVDGDGKKVTGQVETVRLAENNEVQLVIDNKVVSLRFVERVSD 165 >gi|212637784|ref|YP_002314309.1| flagellar hook capping protein [Shewanella piezotolerans WP3] gi|212559268|gb|ACJ31722.1| Flagellar hook capping protein [Shewanella piezotolerans WP3] Length = 221 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/65 (44%), Positives = 42/65 (64%), Gaps = 3/65 (4%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM--NSTLQELLKSN-NLAQASS 84 F+ L+I QIK+QDPT P+ +E V QLA FSQ+E QM N + Q ++ N + Q++ Sbjct: 33 FMTLMIAQIKNQDPTNPIDGTEYVTQLAQFSQVESLEQMRANQSSQMVMMENLGIVQSAH 92 Query: 85 YIGKN 89 +GKN Sbjct: 93 LVGKN 97 >gi|117928056|ref|YP_872607.1| flagellar hook capping protein [Acidothermus cellulolyticus 11B] gi|117648519|gb|ABK52621.1| flagellar hook capping protein [Acidothermus cellulolyticus 11B] Length = 144 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/100 (33%), Positives = 55/100 (55%), Gaps = 4/100 (4%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIG 87 FLKLL+ Q+ HQDP P +S +A+ A F+ ++ MN + L + A + IG Sbjct: 36 FLKLLVAQLSHQDPLNPTDSSTYIAEEAQFAMVQTMNTMNQLMTNLYHDMQTSSAVALIG 95 Query: 88 KNITN--ADGS-ISGVVNAIQVSSTGLTAITVDNTEIPIT 124 K +T +DG+ ++GVV A S G + + +T +P++ Sbjct: 96 KTVTYTASDGTPVTGVVAAAMPGSNG-PMLRIGSTTVPLS 134 >gi|187478184|ref|YP_786208.1| flagellar basal body rod modification protein [Bordetella avium 197N] gi|115422770|emb|CAJ49298.1| basal-body rod modification protein [Bordetella avium 197N] Length = 230 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 44/69 (63%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ--- 81 QD FLKLL+TQ+K+QDP PM+ +E +QLA S +E +N TL + +++Q Sbjct: 27 QDQFLKLLVTQLKNQDPLNPMQNAELTSQLAQISTVEGITNLNKTLLSISGQIDVSQSMN 86 Query: 82 ASSYIGKNI 90 A++ IGK + Sbjct: 87 AAALIGKAV 95 >gi|197120192|ref|YP_002140619.1| flagellar hook capping protein FlgD [Geobacter bemidjiensis Bem] gi|197089552|gb|ACH40823.1| flagellar hook capping protein FlgD [Geobacter bemidjiensis Bem] Length = 221 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 7/77 (9%) Query: 20 KKTLG--QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL--- 74 KK+ G +D FLKL +TQ+++QDP P ++ ++QLA +Q+EQ+ NS LQ +L Sbjct: 19 KKSTGMNKDDFLKLFVTQLQNQDPLNPQDGTQFISQLAQLTQVEQAYNTNSNLQNMLNQG 78 Query: 75 -KSNNLAQASSYIGKNI 90 S LA A + IGK + Sbjct: 79 SNSATLA-AVTLIGKQV 94 >gi|295687863|ref|YP_003591556.1| flagellar hook capping protein [Caulobacter segnis ATCC 21756] gi|295429766|gb|ADG08938.1| flagellar hook capping protein [Caulobacter segnis ATCC 21756] Length = 94 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/48 (50%), Positives = 35/48 (72%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 LG FLKLL+TQ+++Q+P +P +E +QLA +SQ+EQ + MN TL Sbjct: 26 LGTTDFLKLLMTQLENQNPLDPSDPTEFTSQLATYSQLEQQISMNDTL 73 >gi|32477562|ref|NP_870556.1| basal-body rod modification protein FlgD [Rhodopirellula baltica SH 1] gi|32448116|emb|CAD77633.1| probable basal-body rod modification protein FlgD [Rhodopirellula baltica SH 1] Length = 164 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 57/95 (60%), Gaps = 3/95 (3%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74 S ++ +L D+FLKLLI ++++QDP +P+ ++ V Q+ ++ + Q+ +TL +L Sbjct: 39 SANEGYNSLDVDSFLKLLINELQNQDPLDPVDNAQMVQQIGQIREIGATDQLTNTLSDLS 98 Query: 75 KSNNLAQASSYIGKNITN-AD--GSISGVVNAIQV 106 S L AS IG+ ++ AD + +GVV+ I V Sbjct: 99 NSQQLVTASGLIGRTVSGLADDQSNTTGVVDKITV 133 >gi|157959903|ref|YP_001499937.1| flagellar hook capping protein [Shewanella pealeana ATCC 700345] gi|157844903|gb|ABV85402.1| flagellar hook capping protein [Shewanella pealeana ATCC 700345] Length = 219 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 45/65 (69%), Gaps = 3/65 (4%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME--QSVQMNSTLQELLKSN-NLAQASS 84 F+ L+I QI++QDPT P+ +E V+QLA FSQ+E + ++ N ++Q ++ N + Q++ Sbjct: 31 FMTLMIAQIQNQDPTNPIDGTEYVSQLAQFSQVESLEHMRTNQSMQMVMMENLGIVQSAQ 90 Query: 85 YIGKN 89 +GKN Sbjct: 91 LVGKN 95 >gi|317133482|ref|YP_004092796.1| flagellar hook capping protein [Ethanoligenens harbinense YUAN-3] gi|315471461|gb|ADU28065.1| flagellar hook capping protein [Ethanoligenens harbinense YUAN-3] Length = 156 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 61/117 (52%), Gaps = 15/117 (12%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82 G F L+ Q+++QDP EP S+ +AQ+A FS +EQ+ Q+L ++ + Sbjct: 28 FGMSDFFTLMTKQLEYQDPLEPTDNSQFMAQMAQFSMVEQT-------QKLAQTAGIQAG 80 Query: 83 SSYIGKNI----TNADGSIS----GVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 ++ +GK++ T+A +S GVV A+ S + ++ +P+T R+++ Sbjct: 81 TAMVGKDVLYTTTDASTGVSATSEGVVQAVDFSDSSTPQCYINGGWVPLTDVTRVTS 137 >gi|297538895|ref|YP_003674664.1| flagellar hook capping protein [Methylotenera sp. 301] gi|297258242|gb|ADI30087.1| flagellar hook capping protein [Methylotenera sp. 301] Length = 225 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 3/79 (3%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL- 73 S +KS QD F+ LLITQ+K+QDP PM ++ +Q+A S + ++NST++ L Sbjct: 24 SSAKSSVDTAQDRFMTLLITQMKNQDPLNPMDNAQVTSQMAQLSTVTGINKLNSTVESLM 83 Query: 74 --LKSNNLAQASSYIGKNI 90 ++S QA++ IG N+ Sbjct: 84 SSMQSGQSYQAANMIGHNV 102 >gi|86146156|ref|ZP_01064482.1| flagellar basal body rod modification protein [Vibrio sp. MED222] gi|218708803|ref|YP_002416424.1| flagellar basal body rod modification protein [Vibrio splendidus LGP32] gi|85836103|gb|EAQ54235.1| flagellar basal body rod modification protein [Vibrio sp. MED222] gi|218321822|emb|CAV17791.1| Flagellar hook capping protein FlgD [Vibrio splendidus LGP32] Length = 236 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 3/75 (4%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LK 75 K+ L QD FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+ + L + Sbjct: 33 GKQDLKQDDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNTQFESLNSSMT 92 Query: 76 SNNLAQASSYIGKNI 90 SN QASS +G+++ Sbjct: 93 SNQALQASSLVGRDV 107 >gi|299066541|emb|CBJ37731.1| putative Flagellar hook capping protein (flgD) [Ralstonia solanacearum CMR15] Length = 134 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 42/63 (66%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIG 87 FLK+L+TQ+ +QDP +PM + +AQ+A F+ + QS QMNS ++ L+ + Q+ IG Sbjct: 25 FLKVLLTQLTYQDPLKPMDNQQFMAQIAQFTALGQSQQMNSNIETLVSNQASLQSVGLIG 84 Query: 88 KNI 90 + + Sbjct: 85 RTV 87 >gi|187926955|ref|YP_001893300.1| flagellar hook capping protein [Ralstonia pickettii 12J] gi|241665284|ref|YP_002983643.1| flagellar hook capping protein [Ralstonia pickettii 12D] gi|187728709|gb|ACD29873.1| flagellar hook capping protein [Ralstonia pickettii 12J] gi|240867311|gb|ACS64971.1| flagellar hook capping protein [Ralstonia pickettii 12D] Length = 215 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 41/66 (62%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS 84 Q+ F++LL+ Q+++QDP PM S+ +QLA + + Q+N+T+ + N QASS Sbjct: 27 QNTFMQLLVAQLQNQDPLNPMDNSQMTSQLAQINTVNGIQQLNTTMSSMATQNAATQASS 86 Query: 85 YIGKNI 90 IG+ + Sbjct: 87 LIGRTV 92 >gi|163939558|ref|YP_001644442.1| flagellar basal body rod modification protein [Bacillus weihenstephanensis KBAB4] gi|163861755|gb|ABY42814.1| flagellar hook capping protein [Bacillus weihenstephanensis KBAB4] Length = 192 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/123 (25%), Positives = 62/123 (50%), Gaps = 6/123 (4%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASE---QVAQLAVFSQMEQSVQMNSTLQ 71 S K+ +G+D FLKL ++ +HQDP M ++ Q AQL++ Q++ + +L+ Sbjct: 43 SAQKTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDSLR 102 Query: 72 ELLKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128 + S L ++GK + DG ++G V ++++ + +DN + + R Sbjct: 103 TTMYSTALDGGMKFLGKYVRGIDGDGKKVTGQVETVRLAENNDVQLVIDNKIVSLRFVER 162 Query: 129 ISN 131 +S+ Sbjct: 163 VSD 165 >gi|294084419|ref|YP_003551177.1| flagellar hook capping protein [Candidatus Puniceispirillum marinum IMCC1322] gi|292663992|gb|ADE39093.1| flagellar hook capping protein [Candidatus Puniceispirillum marinum IMCC1322] Length = 230 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 60/103 (58%), Gaps = 13/103 (12%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ---ELLKSNNL 79 LGQ+ FL L+ TQ+++QDP PM+ ++ +AQ+A FS + MN TL E L + Sbjct: 35 LGQEEFLTLMTTQLQNQDPFAPMENTDMIAQMAQFSTVTGITDMNQTLNGLAETLAEFRI 94 Query: 80 AQASSYIGKNIT--------NADGSISGVVNAIQVSSTGLTAI 114 A AS+ +G ++ + +G I G+++ S++G+T++ Sbjct: 95 ATASNMLGNSVMIPGNYARPDNNGEIHGMLDL--PSASGVTSL 135 >gi|156973585|ref|YP_001444492.1| flagellar basal body rod modification protein [Vibrio harveyi ATCC BAA-1116] gi|156525179|gb|ABU70265.1| hypothetical protein VIBHAR_01288 [Vibrio harveyi ATCC BAA-1116] Length = 235 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 3/78 (3%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL-- 73 +S K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MNS + L Sbjct: 29 ESTGKQDLKQEDFLSLLTKQLSQQDPFKPVGNDQMIAQMASFATVDGIGKMNSQFESLNS 88 Query: 74 -LKSNNLAQASSYIGKNI 90 + SN QASS +G+++ Sbjct: 89 SMTSNQALQASSLVGRDV 106 >gi|153834466|ref|ZP_01987133.1| flagellar basal body rod modification protein [Vibrio harveyi HY01] gi|269961598|ref|ZP_06175960.1| flagellar basal body rod modification protein [Vibrio harveyi 1DA3] gi|148869162|gb|EDL68194.1| flagellar basal body rod modification protein [Vibrio harveyi HY01] gi|269833639|gb|EEZ87736.1| flagellar basal body rod modification protein [Vibrio harveyi 1DA3] Length = 235 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 3/78 (3%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL-- 73 +S K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MNS + L Sbjct: 29 ESTGKQDLKQEDFLSLLTKQLSQQDPFKPVGNDQMIAQMASFATVDGIGKMNSQFESLNS 88 Query: 74 -LKSNNLAQASSYIGKNI 90 + SN QASS +G+++ Sbjct: 89 SMTSNQALQASSLVGRDV 106 >gi|306820121|ref|ZP_07453769.1| flagellar hook capping protein [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551899|gb|EFM39842.1| flagellar hook capping protein [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 158 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 34/51 (66%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75 +D F+KL + Q+KHQDP EPMK + + Q+A F+ +EQ M ++ ++ K Sbjct: 65 KDTFIKLFVAQMKHQDPMEPMKNEQYMTQMAQFTAVEQMSNMATSFEKFAK 115 >gi|323498421|ref|ZP_08103417.1| flagellar basal body rod modification protein [Vibrio sinaloensis DSM 21326] gi|323316494|gb|EGA69509.1| flagellar basal body rod modification protein [Vibrio sinaloensis DSM 21326] Length = 236 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/98 (32%), Positives = 54/98 (55%), Gaps = 11/98 (11%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LK 75 K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+ + L + Sbjct: 33 GKQDLKQEDFLSLLTKQLSQQDPFKPVSNDQMIAQMASFATVDGIGKMNNQFETLNASMT 92 Query: 76 SNNLAQASSYIGKN--------ITNADGSISGVVNAIQ 105 SN QASS +G++ + DGS++ +VN Q Sbjct: 93 SNQALQASSLVGRDVLIPGAAGVKKDDGSMAAMVNLPQ 130 >gi|329890334|ref|ZP_08268677.1| flagellar hook capping family protein [Brevundimonas diminuta ATCC 11568] gi|328845635|gb|EGF95199.1| flagellar hook capping family protein [Brevundimonas diminuta ATCC 11568] Length = 246 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 3/67 (4%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS---NNLAQASS 84 FL LL TQ+K+QDP P+ ++E AQL + +EQ + N L LLK+ + L A+ Sbjct: 28 FLSLLTTQLKNQDPLSPVDSNEFTAQLTQMAGVEQQLLTNDLLTGLLKAQQGDGLTGAAQ 87 Query: 85 YIGKNIT 91 YIGK+ T Sbjct: 88 YIGKDAT 94 >gi|299068731|emb|CBJ39970.1| flagellar hook assembly protein, basal-body rod modification [Ralstonia solanacearum CMR15] Length = 218 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 42/66 (63%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS 84 Q+ F++LL+ Q+K+QDP PM S+ +QLA + + Q+N+T+ + + +QASS Sbjct: 30 QNTFMQLLVAQLKNQDPLNPMDNSQLTSQLAQINTVNGISQLNTTMSSMATQSAASQASS 89 Query: 85 YIGKNI 90 IG+ + Sbjct: 90 LIGRTV 95 >gi|283955453|ref|ZP_06372951.1| flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni 414] gi|283793080|gb|EFC31851.1| flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni 414] Length = 286 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 39/55 (70%) Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 TL +DAFLKLL+ +++HQDPT+PM + + + Q + S +E N T+Q+++++ Sbjct: 42 TLDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNITMQKMVET 96 >gi|77918789|ref|YP_356604.1| flagellar hook initiation protein FlgD [Pelobacter carbinolicus DSM 2380] gi|77544872|gb|ABA88434.1| flagellar hook initiation protein FlgD [Pelobacter carbinolicus DSM 2380] Length = 218 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 37/55 (67%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77 LG+D FL LL+TQ+++QDP P +E +QLA +S +EQ +N LQ+L +N Sbjct: 25 LGKDDFLLLLVTQLQNQDPLNPQDPTEFTSQLAQYSSLEQLFTVNDQLQQLETTN 79 >gi|329901229|ref|ZP_08272754.1| Flagellar basal-body rod modification protein FlgD [Oxalobacteraceae bacterium IMCC9480] gi|327549161|gb|EGF33753.1| Flagellar basal-body rod modification protein FlgD [Oxalobacteraceae bacterium IMCC9480] Length = 224 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 44/69 (63%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNLAQ 81 QD F+KLL+TQ+K+QDP P+ ++ +QLA S + +MN+TL+ ++ +S + Q Sbjct: 33 QDRFMKLLVTQMKNQDPLNPLDNAQVTSQLAQLSTVSGIDKMNTTLESMIASQQSGSAVQ 92 Query: 82 ASSYIGKNI 90 A+ IG + Sbjct: 93 AAGMIGHGV 101 >gi|163802604|ref|ZP_02196496.1| flagellar basal body rod modification protein D [Vibrio sp. AND4] gi|159173687|gb|EDP58506.1| flagellar basal body rod modification protein D [Vibrio sp. AND4] Length = 235 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 3/79 (3%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL- 73 +S K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MNS + L Sbjct: 28 GESTGKQELKQEDFLSLLTKQLSQQDPFKPVGNDQMIAQMASFATVDGIGKMNSQFENLN 87 Query: 74 --LKSNNLAQASSYIGKNI 90 + SN QASS +G+++ Sbjct: 88 SSMTSNQALQASSLVGRDV 106 >gi|325921023|ref|ZP_08182905.1| flagellar hook capping protein [Xanthomonas gardneri ATCC 19865] gi|325548505|gb|EGD19477.1| flagellar hook capping protein [Xanthomonas gardneri ATCC 19865] Length = 223 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 3/84 (3%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69 T S K +++LGQ FLKL+ Q++HQDP +PM+ S + QLA FS ++ +N+ Sbjct: 16 TSSAASTKKKEESLGQADFLKLMTEQLQHQDPLKPMENSAFLGQLAQFSTVQGIGDLNTK 75 Query: 70 LQEL---LKSNNLAQASSYIGKNI 90 + + S+ + + ++ +G N+ Sbjct: 76 VGNFSDSMNSDQVLKGAALVGHNV 99 >gi|323495378|ref|ZP_08100455.1| flagellar basal body rod modification protein [Vibrio brasiliensis LMG 20546] gi|323310301|gb|EGA63488.1| flagellar basal body rod modification protein [Vibrio brasiliensis LMG 20546] Length = 237 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 53/94 (56%), Gaps = 11/94 (11%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS---TLQELLK 75 K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+ TL + Sbjct: 34 GKQDLKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNNQFETLNASMT 93 Query: 76 SNNLAQASSYIGKN--------ITNADGSISGVV 101 SN QASS +G++ + N DGS++ +V Sbjct: 94 SNQALQASSLVGRDVLVPGAAGVKNDDGSMAAMV 127 >gi|238755325|ref|ZP_04616668.1| Flagellar hook capping protein [Yersinia ruckeri ATCC 29473] gi|238706461|gb|EEP98835.1| Flagellar hook capping protein [Yersinia ruckeri ATCC 29473] Length = 229 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 54/87 (62%), Gaps = 11/87 (12%) Query: 15 SKSKSKKTLG--------QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66 +K ++K+TLG Q++FL LL+ Q+K+QDPT P++ +E +QLA S ++ ++ Sbjct: 14 AKLETKQTLGGAGSSEEMQNSFLTLLVAQLKNQDPTNPLQNNELTSQLAQISTVQGIEKL 73 Query: 67 NSTLQEL---LKSNNLAQASSYIGKNI 90 N+TL + + SN QAS+ +G + Sbjct: 74 NTTLGSISGQIDSNQSLQASALLGHGV 100 >gi|255099421|ref|ZP_05328398.1| putative basal-body rod modification protein [Clostridium difficile QCD-63q42] Length = 202 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 12/94 (12%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN------ 78 +D F+K+L+ Q+ +QDP P +E V+QLA F+ +E+ MN L LL +N Sbjct: 59 KDLFMKILVAQMGNQDPMNPQDPTEYVSQLAQFATLEKMSAMNEKLDVLLALSNSTLINS 118 Query: 79 -LAQASSYIGKNI-----TNADGSISGVVNAIQV 106 L+ A+S IGK + D +I GVV + + Sbjct: 119 ALSMATSLIGKEVEVSGEEKEDENIVGVVKSTYI 152 >gi|126697825|ref|YP_001086722.1| putative basal-body rod modification protein [Clostridium difficile 630] gi|115249262|emb|CAJ67075.1| Basal-body rod modification protein FlgD [Clostridium difficile] Length = 202 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 12/94 (12%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN------ 78 +D F+K+L+ Q+ +QDP P +E V+QLA F+ +E+ MN L LL +N Sbjct: 59 KDLFMKILVAQMGNQDPMNPQDPTEYVSQLAQFATLEKMSAMNEKLDVLLALSNSTLINS 118 Query: 79 -LAQASSYIGKNI-----TNADGSISGVVNAIQV 106 L+ A+S IGK + D +I GVV + + Sbjct: 119 ALSMATSLIGKEVEVSGEEKEDENIVGVVKSTYI 152 >gi|67641537|ref|ZP_00440314.1| basal-body rod modification protein FlgD [Burkholderia mallei GB8 horse 4] gi|121598638|ref|YP_994290.1| flagellar basal body rod modification protein [Burkholderia mallei SAVP1] gi|124386481|ref|YP_001028061.1| flagellar basal body rod modification protein [Burkholderia mallei NCTC 10229] gi|126451230|ref|YP_001082868.1| flagellar basal body rod modification protein [Burkholderia mallei NCTC 10247] gi|161579514|ref|YP_104797.2| flagellar basal body rod modification protein [Burkholderia mallei ATCC 23344] gi|167001536|ref|ZP_02267331.1| basal-body rod modification protein FlgD [Burkholderia mallei PRL-20] gi|254175221|ref|ZP_04881882.1| basal-body rod modification protein FlgD [Burkholderia mallei ATCC 10399] gi|254201895|ref|ZP_04908259.1| basal-body rod modification protein FlgD [Burkholderia mallei FMH] gi|254207229|ref|ZP_04913580.1| basal-body rod modification protein FlgD [Burkholderia mallei JHU] gi|254359731|ref|ZP_04976002.1| basal-body rod modification protein FlgD [Burkholderia mallei 2002721280] gi|121227448|gb|ABM49966.1| basal-body rod modification protein FlgD [Burkholderia mallei SAVP1] gi|124294501|gb|ABN03770.1| basal-body rod modification protein FlgD [Burkholderia mallei NCTC 10229] gi|126244100|gb|ABO07193.1| basal-body rod modification protein FlgD [Burkholderia mallei NCTC 10247] gi|147747789|gb|EDK54865.1| basal-body rod modification protein FlgD [Burkholderia mallei FMH] gi|147752771|gb|EDK59837.1| basal-body rod modification protein FlgD [Burkholderia mallei JHU] gi|148028945|gb|EDK86877.1| basal-body rod modification protein FlgD [Burkholderia mallei 2002721280] gi|160696266|gb|EDP86236.1| basal-body rod modification protein FlgD [Burkholderia mallei ATCC 10399] gi|238522488|gb|EEP85932.1| basal-body rod modification protein FlgD [Burkholderia mallei GB8 horse 4] gi|243062737|gb|EES44923.1| basal-body rod modification protein FlgD [Burkholderia mallei PRL-20] Length = 277 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N+ L L L + Q Sbjct: 69 QTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTALTSLSSQLTAGQQTQ 128 Query: 82 ASSYIGKNI 90 A+ IG N+ Sbjct: 129 AAMLIGSNV 137 >gi|161723213|ref|YP_106899.2| flagellar basal body rod modification protein [Burkholderia pseudomallei K96243] Length = 283 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N+ L L L + Q Sbjct: 72 QTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTALTSLSSQLTAGQQTQ 131 Query: 82 ASSYIGKNI 90 A+ IG N+ Sbjct: 132 AAMLIGSNV 140 >gi|167813801|ref|ZP_02445481.1| flagellar basal body rod modification protein [Burkholderia pseudomallei 91] Length = 283 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N+ L L L + Q Sbjct: 72 QTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTALTSLSSQLTAGQQTQ 131 Query: 82 ASSYIGKNI 90 A+ IG N+ Sbjct: 132 AAMLIGSNV 140 >gi|54308096|ref|YP_129116.1| flagellar basal body rod modification protein [Photobacterium profundum SS9] gi|46912522|emb|CAG19314.1| Putative basal-body rod modification protein FlgD [Photobacterium profundum SS9] Length = 238 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 11/98 (11%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQ 71 SK + L QD FL LL Q+ QDP +P+ + +AQ+A F+ ++ QMN +L Sbjct: 31 SKVTGQNELKQDDFLSLLTKQLAQQDPFKPVGNDQMIAQMASFATVDGINQMNEQFGSLN 90 Query: 72 ELLKSNNLAQASSYIGKN--------ITNADGSISGVV 101 + S+ QASS +G++ + A+G I+G+V Sbjct: 91 SAMTSSQALQASSLVGRDVLIPGATGVKKAEGGITGMV 128 >gi|126440236|ref|YP_001057321.1| flagellar basal body rod modification protein [Burkholderia pseudomallei 668] gi|162210025|ref|YP_331877.2| flagellar basal body rod modification protein [Burkholderia pseudomallei 1710b] gi|167736702|ref|ZP_02409476.1| flagellar basal body rod modification protein [Burkholderia pseudomallei 14] gi|167822317|ref|ZP_02453788.1| flagellar basal body rod modification protein [Burkholderia pseudomallei 9] gi|167843907|ref|ZP_02469415.1| flagellar basal body rod modification protein [Burkholderia pseudomallei B7210] gi|167892409|ref|ZP_02479811.1| flagellar basal body rod modification protein [Burkholderia pseudomallei 7894] gi|167900907|ref|ZP_02488112.1| flagellar basal body rod modification protein [Burkholderia pseudomallei NCTC 13177] gi|167909126|ref|ZP_02496217.1| flagellar basal body rod modification protein [Burkholderia pseudomallei 112] gi|167917163|ref|ZP_02504254.1| flagellar basal body rod modification protein [Burkholderia pseudomallei BCC215] gi|217425024|ref|ZP_03456520.1| flagellar hook capping protein [Burkholderia pseudomallei 576] gi|226199857|ref|ZP_03795408.1| flagellar hook capping protein [Burkholderia pseudomallei Pakistan 9] gi|254188071|ref|ZP_04894583.1| flagellar hook capping protein [Burkholderia pseudomallei Pasteur 52237] gi|254196785|ref|ZP_04903209.1| flagellar hook capping protein [Burkholderia pseudomallei S13] gi|254259219|ref|ZP_04950273.1| flagellar hook capping protein [Burkholderia pseudomallei 1710a] gi|254295813|ref|ZP_04963270.1| flagellar hook capping protein [Burkholderia pseudomallei 406e] gi|126219729|gb|ABN83235.1| flagellar hook capping protein [Burkholderia pseudomallei 668] gi|157805801|gb|EDO82971.1| flagellar hook capping protein [Burkholderia pseudomallei 406e] gi|157935751|gb|EDO91421.1| flagellar hook capping protein [Burkholderia pseudomallei Pasteur 52237] gi|169653528|gb|EDS86221.1| flagellar hook capping protein [Burkholderia pseudomallei S13] gi|217392044|gb|EEC32070.1| flagellar hook capping protein [Burkholderia pseudomallei 576] gi|225928208|gb|EEH24244.1| flagellar hook capping protein [Burkholderia pseudomallei Pakistan 9] gi|254217908|gb|EET07292.1| flagellar hook capping protein [Burkholderia pseudomallei 1710a] Length = 280 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N+ L L L + Q Sbjct: 69 QTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTALTSLSSQLTAGQQTQ 128 Query: 82 ASSYIGKNI 90 A+ IG N+ Sbjct: 129 AAMLIGSNV 137 >gi|187778754|ref|ZP_02995227.1| hypothetical protein CLOSPO_02349 [Clostridium sporogenes ATCC 15579] gi|187772379|gb|EDU36181.1| hypothetical protein CLOSPO_02349 [Clostridium sporogenes ATCC 15579] Length = 279 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 7/71 (9%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77 K + L ++AF K+L ++ +QDPT +E V+QLA FS +EQ +NS ++ Sbjct: 53 KKGQDLDKNAFFKILAAELANQDPTNAKDGTEYVSQLAQFSSLEQMANLNSMMK------ 106 Query: 78 NLAQASSYIGK 88 L AS++IGK Sbjct: 107 -LTGASNFIGK 116 >gi|126734092|ref|ZP_01749839.1| flagellar basal-body rod modification protein, putative [Roseobacter sp. CCS2] gi|126716958|gb|EBA13822.1| flagellar basal-body rod modification protein, putative [Roseobacter sp. CCS2] Length = 220 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 9/91 (9%) Query: 9 PTQQEFS----KSKSKKTLGQD--AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 PTQQ S S + +G D FL++L Q+K+QDP P+ +++ QLA FS +EQ Sbjct: 6 PTQQVASTPPAPSAASTQIGSDFEVFLQMLTAQMKYQDPLNPVDSTDYATQLATFSGVEQ 65 Query: 63 SVQMNSTLQEL---LKSNNLAQASSYIGKNI 90 +V N L+ L + + L ++ +GK + Sbjct: 66 AVLTNDLLKSLTTQMNTGGLVDMAALVGKQV 96 >gi|254251190|ref|ZP_04944508.1| Flagellar hook capping protein [Burkholderia dolosa AUO158] gi|124893799|gb|EAY67679.1| Flagellar hook capping protein [Burkholderia dolosa AUO158] Length = 245 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N++L L L + Q Sbjct: 39 QATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTSLTSLSTQLAAGQQTQ 98 Query: 82 ASSYIGKNI 90 A+ IG N+ Sbjct: 99 AALLIGSNV 107 >gi|254460266|ref|ZP_05073682.1| flagellar scaffolding protein FlgD [Rhodobacterales bacterium HTCC2083] gi|206676855|gb|EDZ41342.1| flagellar scaffolding protein FlgD [Rhodobacteraceae bacterium HTCC2083] Length = 230 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 11/95 (11%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK--- 75 +K+ LGQD FLKL+ Q+++QDP PM + +AQ+A FS + M TL + Sbjct: 30 AKEELGQDDFLKLMTAQLQNQDPFAPMDNGDFIAQMAQFSSVAGISDMGKTLNTIADQLG 89 Query: 76 ------SNNLAQASSYIGKNITNAD--GSISGVVN 102 S N+ S + NI AD G + GV++ Sbjct: 90 QFRVGSSVNMLGHSVLLPGNIARADDKGEVHGVLD 124 >gi|170754574|ref|YP_001782273.1| flagellar hook capping protein [Clostridium botulinum B1 str. Okra] gi|169119786|gb|ACA43622.1| flagellar hook capping protein [Clostridium botulinum B1 str. Okra] Length = 273 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 7/71 (9%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77 K + L ++AF K+L ++ +QDPT +E V+QLA FS +EQ +NS ++ Sbjct: 56 KKGQDLDKNAFFKILAAELANQDPTNAKDGTEYVSQLAQFSSLEQMANLNSMMK------ 109 Query: 78 NLAQASSYIGK 88 L AS++IGK Sbjct: 110 -LTGASNFIGK 119 >gi|170734375|ref|YP_001766322.1| flagellar basal body rod modification protein [Burkholderia cenocepacia MC0-3] gi|254246964|ref|ZP_04940285.1| Flagellar hook capping protein [Burkholderia cenocepacia PC184] gi|124871740|gb|EAY63456.1| Flagellar hook capping protein [Burkholderia cenocepacia PC184] gi|169817617|gb|ACA92200.1| flagellar hook capping protein [Burkholderia cenocepacia MC0-3] Length = 248 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N++L L L + Q Sbjct: 40 QATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTSLTSLSTQLAAGQQTQ 99 Query: 82 ASSYIGKNI 90 A+ IG N+ Sbjct: 100 AALLIGTNV 108 >gi|153941387|ref|YP_001391957.1| flagellar hook capping protein [Clostridium botulinum F str. Langeland] gi|152937283|gb|ABS42781.1| flagellar hook capping protein [Clostridium botulinum F str. Langeland] gi|295319976|gb|ADG00354.1| flagellar hook capping protein [Clostridium botulinum F str. 230613] Length = 273 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 7/71 (9%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77 K + L ++AF K+L ++ +QDPT +E V+QLA FS +EQ +NS ++ Sbjct: 56 KKGQDLDKNAFFKILAAELANQDPTNAKDGTEYVSQLAQFSSLEQMANLNSMMK------ 109 Query: 78 NLAQASSYIGK 88 L AS++IGK Sbjct: 110 -LTGASNFIGK 119 >gi|329849963|ref|ZP_08264809.1| basal-body rod modification protein flgD [Asticcacaulis biprosthecum C19] gi|328841874|gb|EGF91444.1| basal-body rod modification protein flgD [Asticcacaulis biprosthecum C19] Length = 218 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 7/90 (7%) Query: 8 NPTQQEFSKSKSKKTLG--QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65 N T Q + +K K+L + FL LL QI++QDP PM ++E QL +S +EQ ++ Sbjct: 8 NATTQT-TATKDAKSLAANYETFLSLLTAQIRNQDPLSPMDSTEWTNQLVQYSSVEQQLK 66 Query: 66 MNSTLQELLKS----NNLAQASSYIGKNIT 91 N L+++ K+ + + A +YIGK ++ Sbjct: 67 GNDYLEKISKALDGGDTMNTAVNYIGKTVS 96 >gi|226950069|ref|YP_002805160.1| flagellar hook capping protein [Clostridium botulinum A2 str. Kyoto] gi|226843577|gb|ACO86243.1| flagellar hook capping protein [Clostridium botulinum A2 str. Kyoto] Length = 273 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 7/71 (9%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77 K + L ++AF K+L ++ +QDPT +E V+QLA FS +EQ +NS ++ Sbjct: 56 KKGQDLDKNAFFKILAAELANQDPTNAKDGTEYVSQLAQFSSLEQMANLNSMMK------ 109 Query: 78 NLAQASSYIGK 88 L AS++IGK Sbjct: 110 -LTGASNFIGK 119 >gi|52427987|gb|AAU48580.1| basal-body rod modification protein FlgD [Burkholderia mallei ATCC 23344] Length = 255 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N+ L L L + Q Sbjct: 47 QTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTALTSLSSQLTAGQQTQ 106 Query: 82 ASSYIGKNI 90 A+ IG N+ Sbjct: 107 AAMLIGSNV 115 >gi|268680905|ref|YP_003305336.1| flagellar hook capping protein [Sulfurospirillum deleyianum DSM 6946] gi|268618936|gb|ACZ13301.1| flagellar hook capping protein [Sulfurospirillum deleyianum DSM 6946] Length = 229 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/93 (36%), Positives = 55/93 (59%), Gaps = 14/93 (15%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSY 85 D FL+LL+T+++HQDPT+PM + + + Q A S +E S + L+EL S+ L+ Sbjct: 32 DDFLQLLLTELEHQDPTDPMDSDKILTQTAQLSSLEASQNTTAALEEL--SDQLS----- 84 Query: 86 IGKNITNADGSISGVVNAIQVSSTGLTAITVDN 118 N + S GV+ Q++S G +AIT++N Sbjct: 85 -----ANTNFSAIGVIG--QMASLGSSAITLEN 110 >gi|52208327|emb|CAH34260.1| putative basal-body rod modification protein [Burkholderia pseudomallei K96243] Length = 261 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N+ L L L + Q Sbjct: 50 QTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTALTSLSSQLTAGQQTQ 109 Query: 82 ASSYIGKNI 90 A+ IG N+ Sbjct: 110 AAMLIGSNV 118 >gi|119384362|ref|YP_915418.1| flagellar basal body rod modification protein [Paracoccus denitrificans PD1222] gi|119374129|gb|ABL69722.1| flagellar hook capping protein [Paracoccus denitrificans PD1222] Length = 221 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 4/83 (4%) Query: 12 QEFSKSKSKKTLGQ-DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV---QMN 67 Q FS + Q + FLK+L TQIK+QDP PM +++ QLA FS +EQ V + Sbjct: 18 QSFSAPSESGSADQFEMFLKMLTTQIKNQDPLNPMNSTDFAVQLATFSGVEQQVQTNLLL 77 Query: 68 STLQELLKSNNLAQASSYIGKNI 90 + L + + L Q S++IG+ + Sbjct: 78 TQLLQNINGGELGQFSNWIGREV 100 >gi|42780845|ref|NP_978092.1| flagellar basal body rod modification protein [Bacillus cereus ATCC 10987] gi|42736765|gb|AAS40700.1| flagellar hook assembly protein family protein [Bacillus cereus ATCC 10987] Length = 192 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 6/120 (5%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---L 74 K+ +G+D FLKL ++ +HQDP M ++ + Q A S MEQ M + L + Sbjct: 46 KTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDSLRTTM 105 Query: 75 KSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 S L ++GK + DG ++G V ++++ + +DN + + R+S+ Sbjct: 106 YSTALDGGMKFLGKYVRGIDGDGKKVTGQVETVRLAENNDVQLVIDNKIVSLRFVERVSD 165 >gi|269103191|ref|ZP_06155888.1| flagellar basal-body rod modification protein FlgD [Photobacterium damselae subsp. damselae CIP 102761] gi|268163089|gb|EEZ41585.1| flagellar basal-body rod modification protein FlgD [Photobacterium damselae subsp. damselae CIP 102761] Length = 243 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/102 (35%), Positives = 54/102 (52%), Gaps = 12/102 (11%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN--- 67 QQE K+ + L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN Sbjct: 27 QQE-QKTTGQNALKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGITKMNDQF 85 Query: 68 STLQELLKSNNLAQASSYIGKNI--------TNADGSISGVV 101 L L SN QASS +G ++ DG++SGVV Sbjct: 86 GVLNTALTSNQALQASSLVGLDVLIPSATAMKTQDGAMSGVV 127 >gi|229058386|ref|ZP_04196770.1| Flagellar hook assembly protein [Bacillus cereus AH603] gi|229132565|ref|ZP_04261414.1| Flagellar hook assembly protein [Bacillus cereus BDRD-ST196] gi|229166593|ref|ZP_04294345.1| Flagellar hook assembly protein [Bacillus cereus AH621] gi|228616847|gb|EEK73920.1| Flagellar hook assembly protein [Bacillus cereus AH621] gi|228650911|gb|EEL06897.1| Flagellar hook assembly protein [Bacillus cereus BDRD-ST196] gi|228719895|gb|EEL71485.1| Flagellar hook assembly protein [Bacillus cereus AH603] Length = 192 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/120 (25%), Positives = 61/120 (50%), Gaps = 6/120 (5%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASE---QVAQLAVFSQMEQSVQMNSTLQELL 74 K+ +G+D FLKL ++ +HQDP M ++ Q AQL++ Q++ + +L+ + Sbjct: 46 KTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDSLRTTM 105 Query: 75 KSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 S L ++GK + DG ++G V ++++ + +DN + + R+S+ Sbjct: 106 YSTALDGGMKFLGKYVRGIDGDGKKVTGQVETVRLAENNDVQLVIDNKIVSLRFVERVSD 165 >gi|126454100|ref|YP_001064563.1| flagellar basal body rod modification protein [Burkholderia pseudomallei 1106a] gi|134283615|ref|ZP_01770314.1| flagellar hook capping protein [Burkholderia pseudomallei 305] gi|167717659|ref|ZP_02400895.1| flagellar basal body rod modification protein [Burkholderia pseudomallei DM98] gi|242315536|ref|ZP_04814552.1| flagellar hook capping protein [Burkholderia pseudomallei 1106b] gi|126227742|gb|ABN91282.1| flagellar hook capping protein [Burkholderia pseudomallei 1106a] gi|134245024|gb|EBA45119.1| flagellar hook capping protein [Burkholderia pseudomallei 305] gi|242138775|gb|EES25177.1| flagellar hook capping protein [Burkholderia pseudomallei 1106b] Length = 280 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N+ L L L + Q Sbjct: 69 QTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTALTSLSSQLTAGQQTQ 128 Query: 82 ASSYIGKNI 90 A+ IG N+ Sbjct: 129 AAMLIGSNV 137 >gi|254182141|ref|ZP_04888738.1| flagellar hook capping protein [Burkholderia pseudomallei 1655] gi|184212679|gb|EDU09722.1| flagellar hook capping protein [Burkholderia pseudomallei 1655] Length = 280 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N+ L L L + Q Sbjct: 69 QTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTALTSLSSQLTAGQQTQ 128 Query: 82 ASSYIGKNI 90 A+ IG N+ Sbjct: 129 AAMLIGSNV 137 >gi|284925345|gb|ADC27697.1| flagellar basal body rod modification protein [Campylobacter jejuni subsp. jejuni IA3902] Length = 294 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 39/54 (72%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 L +DAFLKLL+ +++HQDPT+PM + + + Q + S +E N+T+Q+++++ Sbjct: 46 LDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVET 99 >gi|237810460|ref|YP_002894911.1| flagellar basal body rod modification protein [Burkholderia pseudomallei MSHR346] gi|237503425|gb|ACQ95743.1| flagellar basal body rod modification protein [Burkholderia pseudomallei MSHR346] Length = 280 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N+ L L L + Q Sbjct: 69 QTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTALTSLSSQLTAGQQTQ 128 Query: 82 ASSYIGKNI 90 A+ IG N+ Sbjct: 129 AAMLIGSNV 137 >gi|242238968|ref|YP_002987149.1| flagellar hook capping protein [Dickeya dadantii Ech703] gi|242131025|gb|ACS85327.1| flagellar hook capping protein [Dickeya dadantii Ech703] Length = 225 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q+ F+ LL+ Q+++QDPT+PM S+ QLA S + ++N+TL + L +N + Q Sbjct: 31 QNEFMTLLVAQLQNQDPTDPMDNSQLTTQLAQISMLSGIEEINTTLGSITSQLDTNEMLQ 90 Query: 82 ASSYIGKNI 90 AS+ IG + Sbjct: 91 ASTLIGNGV 99 >gi|167579487|ref|ZP_02372361.1| flagellar basal body rod modification protein [Burkholderia thailandensis TXDOH] Length = 289 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N+ L L L + Q Sbjct: 78 QTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTALTSLSSQLTAGQQTQ 137 Query: 82 ASSYIGKNI 90 A+ IG N+ Sbjct: 138 AAMLIGSNV 146 >gi|322806986|emb|CBZ04556.1| flagellar basal-body rod modification protein FlgD [Clostridium botulinum H04402 065] Length = 270 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 7/71 (9%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77 K + L ++AF K+L ++ +QDPT +E V+QLA FS +EQ +NS ++ Sbjct: 53 KKGQDLDKNAFFKILAAELANQDPTNAKDGTEYVSQLAQFSSLEQMANLNSMMK------ 106 Query: 78 NLAQASSYIGK 88 L AS++IGK Sbjct: 107 -LTGASNFIGK 116 >gi|251772437|gb|EES53004.1| flagellar hook capping protein [Leptospirillum ferrodiazotrophum] Length = 278 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 44/74 (59%), Gaps = 3/74 (4%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KS 76 KK LG + ++ ++I Q+++QDP PM + +QLA FSQ++Q V MN ++ + + Sbjct: 31 KKKLGMEDYMNIMIRQLQYQDPFHPMDNRKFASQLAQFSQLDQLVHMNKKMEGMANQGRE 90 Query: 77 NNLAQASSYIGKNI 90 + Q ++G+ + Sbjct: 91 TDALQMVGFLGREV 104 >gi|161526187|ref|YP_001581199.1| flagellar basal body rod modification protein [Burkholderia multivorans ATCC 17616] gi|189349097|ref|YP_001944725.1| flagellar basal body rod modification protein [Burkholderia multivorans ATCC 17616] gi|160343616|gb|ABX16702.1| flagellar hook capping protein [Burkholderia multivorans ATCC 17616] gi|189333119|dbj|BAG42189.1| flagellar basal-body rod modification protein [Burkholderia multivorans ATCC 17616] Length = 247 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N++L L L + Q Sbjct: 39 QATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTSLTSLSTQLAAGQQTQ 98 Query: 82 ASSYIGKNI 90 A+ IG N+ Sbjct: 99 AALLIGSNV 107 >gi|323527714|ref|YP_004229867.1| flagellar hook capping protein [Burkholderia sp. CCGE1001] gi|323384716|gb|ADX56807.1| flagellar hook capping protein [Burkholderia sp. CCGE1001] Length = 243 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 3/77 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q+ FL LL+ Q+K+QDPT PM +S+ +QLA + + Q+N+TL L + + +Q Sbjct: 50 QNTFLSLLVAQLKNQDPTNPMDSSQMTSQLAQINTVSGISQLNTTLSSLATQMSAGQQSQ 109 Query: 82 ASSYIGKNITNADGSIS 98 A+ IG + SIS Sbjct: 110 AALLIGSTVLAPGSSIS 126 >gi|251789167|ref|YP_003003888.1| flagellar basal body rod modification protein [Dickeya zeae Ech1591] gi|247537788|gb|ACT06409.1| flagellar hook capping protein [Dickeya zeae Ech1591] Length = 223 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 44/69 (63%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q++FL LL+ Q+K+QDPT PM ++ V+QLA + + ++N+TL + + SN Q Sbjct: 31 QNSFLTLLVAQLKNQDPTNPMDNNQLVSQLAQLNTVSGIEKLNTTLGSISTQINSNQSVQ 90 Query: 82 ASSYIGKNI 90 A+S IG + Sbjct: 91 AASLIGHGV 99 >gi|221199738|ref|ZP_03572781.1| basal-body rod modification protein FlgD [Burkholderia multivorans CGD2M] gi|221208657|ref|ZP_03581657.1| basal-body rod modification protein FlgD [Burkholderia multivorans CGD2] gi|221215570|ref|ZP_03588533.1| basal-body rod modification protein FlgD [Burkholderia multivorans CGD1] gi|221164558|gb|EED97041.1| basal-body rod modification protein FlgD [Burkholderia multivorans CGD1] gi|221171468|gb|EEE03915.1| basal-body rod modification protein FlgD [Burkholderia multivorans CGD2] gi|221179977|gb|EEE12381.1| basal-body rod modification protein FlgD [Burkholderia multivorans CGD2M] Length = 247 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N++L L L + Q Sbjct: 39 QATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTSLTSLSTQLAAGQQTQ 98 Query: 82 ASSYIGKNI 90 A+ IG N+ Sbjct: 99 AALLIGSNV 107 >gi|107023954|ref|YP_622281.1| flagellar basal body rod modification protein [Burkholderia cenocepacia AU 1054] gi|116691041|ref|YP_836664.1| flagellar basal body rod modification protein [Burkholderia cenocepacia HI2424] gi|105894143|gb|ABF77308.1| flagellar hook capping protein [Burkholderia cenocepacia AU 1054] gi|116649130|gb|ABK09771.1| flagellar hook capping protein [Burkholderia cenocepacia HI2424] Length = 248 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N++L L L + Q Sbjct: 40 QATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTSLTSLSTQLAAGQQTQ 99 Query: 82 ASSYIGKNI 90 A+ IG N+ Sbjct: 100 AALLIGTNV 108 >gi|34558067|ref|NP_907882.1| flagellar basal body rod modification protein [Wolinella succinogenes DSM 1740] gi|34483785|emb|CAE10782.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Wolinella succinogenes] Length = 270 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 22/49 (44%), Positives = 34/49 (69%) Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 TL +DAF++L + Q+K QDPT PM+ + + Q A+ +Q+EQ +M TL Sbjct: 26 TLDKDAFMRLFLEQLKSQDPTSPMETEKILEQTAMLTQLEQQEEMKKTL 74 >gi|168180919|ref|ZP_02615583.1| flagellar hook capping protein [Clostridium botulinum NCTC 2916] gi|182668206|gb|EDT80185.1| flagellar hook capping protein [Clostridium botulinum NCTC 2916] Length = 270 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 7/71 (9%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77 K + L ++AF K+L ++ +QDPT +E V+QLA FS +EQ +NS ++ Sbjct: 53 KKGQDLDKNAFFKILAAELANQDPTNAKDGTEYVSQLAQFSSLEQMANLNSMMK------ 106 Query: 78 NLAQASSYIGK 88 L AS++IGK Sbjct: 107 -LTGASNFIGK 116 >gi|77165839|ref|YP_344364.1| flagellar hook capping protein [Nitrosococcus oceani ATCC 19707] gi|254433359|ref|ZP_05046867.1| flagellar hook capping protein, putative [Nitrosococcus oceani AFC27] gi|76884153|gb|ABA58834.1| Flagellar hook capping protein [Nitrosococcus oceani ATCC 19707] gi|207089692|gb|EDZ66963.1| flagellar hook capping protein, putative [Nitrosococcus oceani AFC27] Length = 226 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 11/90 (12%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNL 79 LG + FLKL+ Q+ +QDP EPM S ++Q+A F ++ + ++ QE+ L+SN Sbjct: 30 LGLEQFLKLMTAQLSNQDPFEPMDNSTFLSQVAQFGTVKGIQDLQASFQEVSGSLQSNQA 89 Query: 80 AQASSYIGKNI--------TNADGSISGVV 101 QAS +G+++ A GSI G V Sbjct: 90 LQASGLVGRSVLVPSAESSLEAGGSIRGAV 119 >gi|209521588|ref|ZP_03270286.1| flagellar hook capping protein [Burkholderia sp. H160] gi|209497971|gb|EDZ98128.1| flagellar hook capping protein [Burkholderia sp. H160] Length = 237 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 48/77 (62%), Gaps = 3/77 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q+ FL+LL+ Q+K+QDPT PM +S+ +QLA S ++ +N++L L L + +Q Sbjct: 44 QNTFLQLLVAQMKNQDPTNPMDSSQMTSQLAQISTVQGISNLNTSLSSLSTQLTAGQQSQ 103 Query: 82 ASSYIGKNITNADGSIS 98 A+ IG + ++ SI+ Sbjct: 104 AALLIGSTVLSSGNSIT 120 >gi|74317653|ref|YP_315393.1| flagellar basal body rod modification protein [Thiobacillus denitrificans ATCC 25259] gi|74057148|gb|AAZ97588.1| flagellar basal-body rod modification protein FlgD [Thiobacillus denitrificans ATCC 25259] Length = 221 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 5/79 (6%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL- 73 SKS S T QD FL LL+ Q+K+QDP P+ +E +Q+A S +E MN +L+ L Sbjct: 22 SKSGSSDT--QDRFLSLLVAQMKNQDPLNPLDNAEVTSQMAQLSTVEGIENMNKSLEALA 79 Query: 74 --LKSNNLAQASSYIGKNI 90 + ++ ++QA++ IG + Sbjct: 80 SSMGASQMSQAANLIGHAV 98 >gi|83720138|ref|YP_440800.1| flagellar basal body rod modification protein [Burkholderia thailandensis E264] gi|167617584|ref|ZP_02386215.1| flagellar basal body rod modification protein [Burkholderia thailandensis Bt4] gi|257140549|ref|ZP_05588811.1| flagellar basal body rod modification protein [Burkholderia thailandensis E264] gi|83653963|gb|ABC38026.1| basal-body rod modification protein FlgD [Burkholderia thailandensis E264] Length = 278 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N+ L L L + Q Sbjct: 67 QTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTALTSLSSQLTAGQQTQ 126 Query: 82 ASSYIGKNI 90 A+ IG N+ Sbjct: 127 AAMLIGSNV 135 >gi|148976393|ref|ZP_01813099.1| flagellar basal body rod modification protein D [Vibrionales bacterium SWAT-3] gi|145964216|gb|EDK29472.1| flagellar basal body rod modification protein D [Vibrionales bacterium SWAT-3] Length = 237 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 3/75 (4%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LK 75 K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MNS + L + Sbjct: 34 GKQDLKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNSQFESLNSSMT 93 Query: 76 SNNLAQASSYIGKNI 90 SN QASS +G+++ Sbjct: 94 SNQALQASSLVGRDV 108 >gi|229078935|ref|ZP_04211487.1| Flagellar hook assembly protein [Bacillus cereus Rock4-2] gi|228704349|gb|EEL56783.1| Flagellar hook assembly protein [Bacillus cereus Rock4-2] Length = 192 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 6/120 (5%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASE---QVAQLAVFSQMEQSVQMNSTLQELL 74 K+ +G+D FLKL ++ +HQDP M ++ Q AQL++ Q++ + LQ + Sbjct: 46 KTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDKLQSTM 105 Query: 75 KSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 S L ++GK + DG ++G V ++++ + ++N + + R+S+ Sbjct: 106 YSTALDGGMKFLGKYVRGVDGDGNKVTGQVETVRLAENNDVQLVINNKVVSLRFVERVSD 165 >gi|91791428|ref|YP_561079.1| flagellar hook capping protein [Shewanella denitrificans OS217] gi|91713430|gb|ABE53356.1| flagellar hook capping protein [Shewanella denitrificans OS217] Length = 135 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/108 (32%), Positives = 56/108 (51%), Gaps = 4/108 (3%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSY 85 D FL+L + Q+ +QDP EP+ SE +AQLA FS +E + Q N LL + QA Sbjct: 23 DDFLQLFVAQLNYQDPLEPVNNSEFLAQLAQFSSLEINRQSNDNSLSLLAIGSSDQALGL 82 Query: 86 IGKNI---TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 IG+++ T + + G V + + G +TV + + T I++ Sbjct: 83 IGRSVEVNTQSGQAFIGDVTGVNFTQQG-PMLTVKGADDSLLTDIKLG 129 >gi|170288060|ref|YP_001738298.1| flagellar hook capping protein [Thermotoga sp. RQ2] gi|281411900|ref|YP_003345979.1| flagellar hook capping protein [Thermotoga naphthophila RKU-10] gi|170175563|gb|ACB08615.1| flagellar hook capping protein [Thermotoga sp. RQ2] gi|281373003|gb|ADA66565.1| flagellar hook capping protein [Thermotoga naphthophila RKU-10] Length = 224 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 47/72 (65%), Gaps = 3/72 (4%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK---SNNL 79 L ++AFL+LL+ +++ QDP EPM+ + ++QL+ + +EQ + S +++ ++ S N Sbjct: 27 LDKEAFLRLLLQELEMQDPLEPMETKDMISQLSQLTSLEQITNLTSAVKDFVEAQTSVNP 86 Query: 80 AQASSYIGKNIT 91 AQ +S IGK + Sbjct: 87 AQLASLIGKYVV 98 >gi|95929856|ref|ZP_01312597.1| flagellar hook capping protein [Desulfuromonas acetoxidans DSM 684] gi|95134152|gb|EAT15810.1| flagellar hook capping protein [Desulfuromonas acetoxidans DSM 684] Length = 222 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 34/57 (59%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73 S LG+ FL L++ Q+K+QDP P A+E AQLA FS +EQ +N L+ + Sbjct: 22 SSGANALGKQDFLTLMVEQLKNQDPMNPSDATEFTAQLAQFSSLEQLFNVNDNLESM 78 >gi|148269403|ref|YP_001243863.1| flagellar hook capping protein [Thermotoga petrophila RKU-1] gi|147734947|gb|ABQ46287.1| flagellar hook capping protein [Thermotoga petrophila RKU-1] Length = 224 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 47/72 (65%), Gaps = 3/72 (4%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK---SNNL 79 L ++AFL+LL+ +++ QDP EPM+ + ++QL+ + +EQ + S +++ ++ S N Sbjct: 27 LDKEAFLRLLLQELEMQDPLEPMETKDMISQLSQLASLEQITNLTSAVKDFVEAQTSVNP 86 Query: 80 AQASSYIGKNIT 91 AQ +S IGK + Sbjct: 87 AQLASLIGKYVV 98 >gi|255305279|ref|ZP_05349451.1| putative basal-body rod modification protein [Clostridium difficile ATCC 43255] Length = 202 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 7/73 (9%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN------ 78 +D F+K+L+ Q+ +QDP P +E V+QLA F+ +E+ MN L LL +N Sbjct: 59 KDLFMKILVAQMGNQDPMNPQDPTEYVSQLAQFATLEKMSAMNEKLDVLLALSNSTLINS 118 Query: 79 -LAQASSYIGKNI 90 L+ A+S IGK + Sbjct: 119 ALSMATSLIGKEV 131 >gi|206558967|ref|YP_002229727.1| flagellar basal body rod modification protein [Burkholderia cenocepacia J2315] gi|198035004|emb|CAR50876.1| basal-body rod modification protein FlgD [Burkholderia cenocepacia J2315] Length = 234 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N++L L L + Q Sbjct: 26 QATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTSLTSLSTQLAAGQQTQ 85 Query: 82 ASSYIGKNI 90 A+ IG N+ Sbjct: 86 AALLIGTNV 94 >gi|255598719|ref|XP_002537066.1| Basal-body rod modification protein flgD, putative [Ricinus communis] gi|223517601|gb|EEF25315.1| Basal-body rod modification protein flgD, putative [Ricinus communis] Length = 222 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA---Q 81 QD F+ LL+TQ+K+QDP PM ++ +Q+A + + ++N T+ L+ S L Q Sbjct: 31 QDRFMTLLVTQMKNQDPLNPMDNAQVTSQMAQLNTVTGINKLNETMSSLIGSVQLGQSYQ 90 Query: 82 ASSYIGKNI 90 A+S IG+N+ Sbjct: 91 ATSMIGRNV 99 >gi|254450579|ref|ZP_05064016.1| basal-body rod modification protein FlgD [Octadecabacter antarcticus 238] gi|198264985|gb|EDY89255.1| basal-body rod modification protein FlgD [Octadecabacter antarcticus 238] Length = 226 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 3/66 (4%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN---LAQA 82 + FLK+L Q+++QDP P +SE QLA FS +EQ+V N L L+ N +AQ Sbjct: 37 ETFLKMLTVQMENQDPLNPTDSSEYAQQLATFSGVEQAVLTNDLLSALMVQMNTTGMAQM 96 Query: 83 SSYIGK 88 + ++GK Sbjct: 97 ADWVGK 102 >gi|171321837|ref|ZP_02910738.1| flagellar hook capping protein [Burkholderia ambifaria MEX-5] gi|171092875|gb|EDT38127.1| flagellar hook capping protein [Burkholderia ambifaria MEX-5] Length = 248 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N++L L L + Q Sbjct: 39 QATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTSLTSLSTQLAAGQQTQ 98 Query: 82 ASSYIGKNI 90 A+ IG N+ Sbjct: 99 AALLIGTNV 107 >gi|115353119|ref|YP_774958.1| flagellar basal body rod modification protein [Burkholderia ambifaria AMMD] gi|115283107|gb|ABI88624.1| flagellar hook capping protein [Burkholderia ambifaria AMMD] Length = 248 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N++L L L + Q Sbjct: 39 QATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTSLTSLSSQLAAGQQTQ 98 Query: 82 ASSYIGKNI 90 A+ IG N+ Sbjct: 99 AALLIGTNV 107 >gi|206970764|ref|ZP_03231716.1| flagellar hook assembly protein family protein [Bacillus cereus AH1134] gi|228920463|ref|ZP_04083808.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|229069304|ref|ZP_04202594.1| Flagellar hook assembly protein [Bacillus cereus F65185] gi|229178161|ref|ZP_04305532.1| Flagellar hook assembly protein [Bacillus cereus 172560W] gi|206734400|gb|EDZ51570.1| flagellar hook assembly protein family protein [Bacillus cereus AH1134] gi|228605291|gb|EEK62741.1| Flagellar hook assembly protein [Bacillus cereus 172560W] gi|228713791|gb|EEL65676.1| Flagellar hook assembly protein [Bacillus cereus F65185] gi|228839093|gb|EEM84389.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 192 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 6/120 (5%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASE---QVAQLAVFSQMEQSVQMNSTLQELL 74 K+ +G+D FLKL ++ +HQDP M ++ Q AQL++ Q++ + LQ + Sbjct: 46 KTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDKLQSTM 105 Query: 75 KSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 S L ++GK + DG ++G V ++++ + ++N + + R+S+ Sbjct: 106 YSTALDGGMKFLGKYVRGVDGDGNKVTGQVETVRLAENNDVQLVINNKVVSLRFVERVSD 165 >gi|78067838|ref|YP_370607.1| flagellar basal body rod modification protein [Burkholderia sp. 383] gi|77968583|gb|ABB09963.1| Flagellar hook capping protein [Burkholderia sp. 383] Length = 251 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N++L L L + Q Sbjct: 39 QATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTSLTSLSTQLTAGQQTQ 98 Query: 82 ASSYIGKNI 90 A+ IG N+ Sbjct: 99 AALLIGTNV 107 >gi|228938866|ref|ZP_04101466.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971747|ref|ZP_04132368.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978356|ref|ZP_04138733.1| Flagellar hook assembly protein [Bacillus thuringiensis Bt407] gi|228781373|gb|EEM29574.1| Flagellar hook assembly protein [Bacillus thuringiensis Bt407] gi|228787837|gb|EEM35795.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228820715|gb|EEM66740.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326939366|gb|AEA15262.1| flagellar basal body rod modification protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 192 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 6/120 (5%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASE---QVAQLAVFSQMEQSVQMNSTLQELL 74 K+ +G+D FLKL ++ +HQDP M ++ Q AQL++ Q++ + LQ + Sbjct: 46 KTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDKLQSTM 105 Query: 75 KSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 S L ++GK + DG ++G V ++++ + ++N + + R+S+ Sbjct: 106 YSTALDGGMKFLGKYVRGVDGDGNKVTGQVETVRLAENNDVQLVINNKVVSLRFVERVSD 165 >gi|172061973|ref|YP_001809625.1| flagellar basal body rod modification protein [Burkholderia ambifaria MC40-6] gi|171994490|gb|ACB65409.1| flagellar hook capping protein [Burkholderia ambifaria MC40-6] Length = 248 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N++L L L + Q Sbjct: 39 QATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTSLTSLSSQLAAGQQTQ 98 Query: 82 ASSYIGKNI 90 A+ IG N+ Sbjct: 99 AALLIGTNV 107 >gi|75761136|ref|ZP_00741128.1| Basal-body rod modification protein flgD [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218896685|ref|YP_002445096.1| flagellar hook assembly protein family protein [Bacillus cereus G9842] gi|228900334|ref|ZP_04064564.1| Flagellar hook assembly protein [Bacillus thuringiensis IBL 4222] gi|228907386|ref|ZP_04071244.1| Flagellar hook assembly protein [Bacillus thuringiensis IBL 200] gi|228964736|ref|ZP_04125843.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar sotto str. T04001] gi|74491364|gb|EAO54588.1| Basal-body rod modification protein flgD [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218540760|gb|ACK93154.1| flagellar hook assembly protein family protein [Bacillus cereus G9842] gi|228794986|gb|EEM42485.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar sotto str. T04001] gi|228852247|gb|EEM97043.1| Flagellar hook assembly protein [Bacillus thuringiensis IBL 200] gi|228859369|gb|EEN03799.1| Flagellar hook assembly protein [Bacillus thuringiensis IBL 4222] Length = 192 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 6/120 (5%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASE---QVAQLAVFSQMEQSVQMNSTLQELL 74 K+ +G+D FLKL ++ +HQDP M ++ Q AQL++ Q++ + LQ + Sbjct: 46 KTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDKLQSTM 105 Query: 75 KSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 S L ++GK + DG ++G V ++++ + ++N + + R+S+ Sbjct: 106 YSTALDGGMKFLGKYVRGVDGDGNKVTGQVETVRLAENNDVQLVINNKVVSLRFVERVSD 165 >gi|325529013|gb|EGD06026.1| flagellar basal body rod modification protein [Burkholderia sp. TJI49] Length = 229 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N++L L L + Q Sbjct: 17 QATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTSLTSLSTQLAAGQQTQ 76 Query: 82 ASSYIGKNI 90 A+ IG N+ Sbjct: 77 AALLIGSNV 85 >gi|170703095|ref|ZP_02893915.1| flagellar hook capping protein [Burkholderia ambifaria IOP40-10] gi|170131992|gb|EDT00500.1| flagellar hook capping protein [Burkholderia ambifaria IOP40-10] Length = 248 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N++L L L + Q Sbjct: 39 QATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTSLTSLSSQLAAGQQTQ 98 Query: 82 ASSYIGKNI 90 A+ IG N+ Sbjct: 99 AALLIGTNV 107 >gi|209964700|ref|YP_002297615.1| basal-body rod modification protein FlgD, putative [Rhodospirillum centenum SW] gi|209958166|gb|ACI98802.1| basal-body rod modification protein FlgD, putative [Rhodospirillum centenum SW] Length = 309 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 39/68 (57%), Gaps = 3/68 (4%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQAS-- 83 + FL+LL Q+K+QDP +P + SE QL FSQ+EQ + NS L L QA+ Sbjct: 35 ETFLQLLTAQLKNQDPLQPQETSEFTNQLVQFSQVEQQISTNSKLDNLTGVVQQGQATVA 94 Query: 84 -SYIGKNI 90 YIGK + Sbjct: 95 LQYIGKTV 102 >gi|255261779|ref|ZP_05341121.1| flagellar basal body rod modification protein [Thalassiobium sp. R2A62] gi|255104114|gb|EET46788.1| flagellar basal body rod modification protein [Thalassiobium sp. R2A62] Length = 220 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 43/65 (66%), Gaps = 3/65 (4%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQASS 84 FLK++ QI++QDP +P+ +++ QLA FS +EQ V+ N L L L+ + +A+ ++ Sbjct: 31 FLKMMTAQIENQDPLDPIDSADYAVQLATFSSVEQQVKTNDLLSALGGQLQLSGMAEMAA 90 Query: 85 YIGKN 89 ++G + Sbjct: 91 WVGMD 95 >gi|260767770|ref|ZP_05876705.1| flagellar basal-body rod modification protein FlgD [Vibrio furnissii CIP 102972] gi|260617279|gb|EEX42463.1| flagellar basal-body rod modification protein FlgD [Vibrio furnissii CIP 102972] gi|315179398|gb|ADT86312.1| flagellar basal body rod modification protein D [Vibrio furnissii NCTC 11218] Length = 235 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 3/75 (4%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LK 75 K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MNS + L + Sbjct: 32 GKQDLKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNSQFENLNSSMT 91 Query: 76 SNNLAQASSYIGKNI 90 SN QASS +G+++ Sbjct: 92 SNQALQASSLVGRDV 106 >gi|83859392|ref|ZP_00952913.1| flagellar hook assembly protein FlgD [Oceanicaulis alexandrii HTCC2633] gi|83852839|gb|EAP90692.1| flagellar hook assembly protein FlgD [Oceanicaulis alexandrii HTCC2633] Length = 242 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNLAQA 82 D FL LL Q+K+QDP +P+++ + V QL FS +EQ + N +L+ LL +S+ +A Sbjct: 29 DTFLTLLTEQLKNQDPLDPLESEQFVQQLVQFSSVEQQIASNESLEALLALQQSDAQLKA 88 Query: 83 SSYIGKNIT 91 +IGK T Sbjct: 89 LDFIGKEAT 97 >gi|229524193|ref|ZP_04413598.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae bv. albensis VL426] gi|229337774|gb|EEO02791.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae bv. albensis VL426] Length = 235 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 51/83 (61%), Gaps = 3/83 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 Q++ ++ +K+L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+ Sbjct: 24 QKKPDETTGQKSLKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNTQF 83 Query: 71 QEL---LKSNNLAQASSYIGKNI 90 + L + SN QASS +G+++ Sbjct: 84 ESLSSSMTSNQALQASSLVGRDV 106 >gi|15642197|ref|NP_231829.1| flagellar basal body rod modification protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121586270|ref|ZP_01676060.1| basal-body rod modification protein FlgD [Vibrio cholerae 2740-80] gi|121726556|ref|ZP_01679805.1| basal-body rod modification protein FlgD [Vibrio cholerae V52] gi|147674438|ref|YP_001217715.1| flagellar basal body rod modification protein [Vibrio cholerae O395] gi|153213643|ref|ZP_01948916.1| basal-body rod modification protein FlgD [Vibrio cholerae 1587] gi|153817067|ref|ZP_01969734.1| basal-body rod modification protein FlgD [Vibrio cholerae NCTC 8457] gi|153820890|ref|ZP_01973557.1| basal-body rod modification protein FlgD [Vibrio cholerae B33] gi|153825362|ref|ZP_01978029.1| basal-body rod modification protein FlgD [Vibrio cholerae MZO-2] gi|153829341|ref|ZP_01982008.1| basal-body rod modification protein FlgD [Vibrio cholerae 623-39] gi|183179564|ref|ZP_02957775.1| basal-body rod modification protein FlgD [Vibrio cholerae MZO-3] gi|227082322|ref|YP_002810873.1| basal-body rod modification protein FlgD [Vibrio cholerae M66-2] gi|229507725|ref|ZP_04397230.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae BX 330286] gi|229512080|ref|ZP_04401559.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae B33] gi|229513842|ref|ZP_04403304.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae TMA 21] gi|229519216|ref|ZP_04408659.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae RC9] gi|229522147|ref|ZP_04411564.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae TM 11079-80] gi|229528797|ref|ZP_04418187.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae 12129(1)] gi|229607229|ref|YP_002877877.1| flagellar basal body rod modification protein [Vibrio cholerae MJ-1236] gi|254225800|ref|ZP_04919405.1| basal-body rod modification protein FlgD [Vibrio cholerae V51] gi|254849327|ref|ZP_05238677.1| basal-body rod modification protein FlgD [Vibrio cholerae MO10] gi|255747103|ref|ZP_05421048.1| flagellar basal-body rod modification protein FlgD [Vibrio cholera CIRS 101] gi|262161353|ref|ZP_06030463.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae INDRE 91/1] gi|262167776|ref|ZP_06035478.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae RC27] gi|262191690|ref|ZP_06049866.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae CT 5369-93] gi|297580844|ref|ZP_06942769.1| flagellar basal body rod modification protein [Vibrio cholerae RC385] gi|298500424|ref|ZP_07010229.1| flagellar basal body rod modification protein [Vibrio cholerae MAK 757] gi|9656754|gb|AAF95343.1| basal-body rod modification protein FlgD [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549536|gb|EAX59562.1| basal-body rod modification protein FlgD [Vibrio cholerae 2740-80] gi|121631009|gb|EAX63388.1| basal-body rod modification protein FlgD [Vibrio cholerae V52] gi|124115842|gb|EAY34662.1| basal-body rod modification protein FlgD [Vibrio cholerae 1587] gi|125621706|gb|EAZ50035.1| basal-body rod modification protein FlgD [Vibrio cholerae V51] gi|126512335|gb|EAZ74929.1| basal-body rod modification protein FlgD [Vibrio cholerae NCTC 8457] gi|126521682|gb|EAZ78905.1| basal-body rod modification protein FlgD [Vibrio cholerae B33] gi|146316321|gb|ABQ20860.1| basal-body rod modification protein FlgD [Vibrio cholerae O395] gi|148875182|gb|EDL73317.1| basal-body rod modification protein FlgD [Vibrio cholerae 623-39] gi|149741046|gb|EDM55115.1| basal-body rod modification protein FlgD [Vibrio cholerae MZO-2] gi|183012975|gb|EDT88275.1| basal-body rod modification protein FlgD [Vibrio cholerae MZO-3] gi|227010210|gb|ACP06422.1| basal-body rod modification protein FlgD [Vibrio cholerae M66-2] gi|227014094|gb|ACP10304.1| basal-body rod modification protein FlgD [Vibrio cholerae O395] gi|229332571|gb|EEN98057.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae 12129(1)] gi|229341072|gb|EEO06077.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae TM 11079-80] gi|229343905|gb|EEO08880.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae RC9] gi|229349023|gb|EEO13980.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae TMA 21] gi|229352045|gb|EEO16986.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae B33] gi|229355230|gb|EEO20151.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae BX 330286] gi|229369884|gb|ACQ60307.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae MJ-1236] gi|254845032|gb|EET23446.1| basal-body rod modification protein FlgD [Vibrio cholerae MO10] gi|255735505|gb|EET90905.1| flagellar basal-body rod modification protein FlgD [Vibrio cholera CIRS 101] gi|262023841|gb|EEY42540.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae RC27] gi|262028664|gb|EEY47318.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae INDRE 91/1] gi|262032429|gb|EEY50991.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae CT 5369-93] gi|297534670|gb|EFH73506.1| flagellar basal body rod modification protein [Vibrio cholerae RC385] gi|297541117|gb|EFH77171.1| flagellar basal body rod modification protein [Vibrio cholerae MAK 757] gi|327484717|gb|AEA79124.1| Flagellar basal-body rod modification protein FlgD [Vibrio cholerae LMA3894-4] Length = 235 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 51/83 (61%), Gaps = 3/83 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 Q++ ++ +K+L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+ Sbjct: 24 QKKPDETTGQKSLKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNTQF 83 Query: 71 QEL---LKSNNLAQASSYIGKNI 90 + L + SN QASS +G+++ Sbjct: 84 ESLNSSMTSNQALQASSLVGRDV 106 >gi|256833234|ref|YP_003161961.1| flagellar hook capping protein [Jonesia denitrificans DSM 20603] gi|256686765|gb|ACV09658.1| flagellar hook capping protein [Jonesia denitrificans DSM 20603] Length = 161 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 52/89 (58%), Gaps = 3/89 (3%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79 K+ + + FL LL+TQ+K+QDP+ PM +E +AQ + MEQ + QE Sbjct: 30 KQEMDGEMFLNLLVTQLKYQDPSSPMDTTEMMAQTTQLASMEQLTALTKVNQESFALQMR 89 Query: 80 AQASSYIGKNI--TNADG-SISGVVNAIQ 105 +++ IG+++ TN+ G + +G V++I+ Sbjct: 90 VASAALIGQDVTFTNSHGDTTTGRVDSIR 118 >gi|261211323|ref|ZP_05925611.1| flagellar basal-body rod modification protein FlgD [Vibrio sp. RC341] gi|260839278|gb|EEX65904.1| flagellar basal-body rod modification protein FlgD [Vibrio sp. RC341] Length = 235 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 51/83 (61%), Gaps = 3/83 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 Q++ ++ +K+L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+ Sbjct: 24 QKKPDETTGQKSLKQEDFLSLLTKQLAQQDPFKPVGNDQMIAQMASFATVDGIGKMNTQF 83 Query: 71 QEL---LKSNNLAQASSYIGKNI 90 + L + SN QASS +G+++ Sbjct: 84 ESLNSSMTSNQALQASSLVGRDV 106 >gi|149912819|ref|ZP_01901353.1| Possible FlgD protein [Roseobacter sp. AzwK-3b] gi|149813225|gb|EDM73051.1| Possible FlgD protein [Roseobacter sp. AzwK-3b] Length = 233 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 47/78 (60%), Gaps = 5/78 (6%) Query: 15 SKSKSKKTLGQD--AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72 +++ K L D FLK+L Q+++QDP P+++++ QLA FS +EQ V+ N L+ Sbjct: 29 AEAPPKPALSSDFETFLKMLTAQMRNQDPLNPVESADFAVQLATFSTVEQQVRTNDLLET 88 Query: 73 L---LKSNNLAQASSYIG 87 L + + ++Q S ++G Sbjct: 89 LGDRMGAMGMSQLSGWVG 106 >gi|225569973|ref|ZP_03778998.1| hypothetical protein CLOHYLEM_06068 [Clostridium hylemonae DSM 15053] gi|225161443|gb|EEG74062.1| hypothetical protein CLOHYLEM_06068 [Clostridium hylemonae DSM 15053] Length = 171 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/90 (37%), Positives = 52/90 (57%), Gaps = 6/90 (6%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV-QMNSTLQEL 73 S SK L + F KLL Q+++QD PM SE +AQ+ V +QM Q++ +M++ E+ Sbjct: 29 SSSKGSNELTINDFYKLLSAQLRYQDADNPMDTSEMMAQM-VQTQMIQAITEMSAINLEM 87 Query: 74 LKSNNLAQASSYIGKNITNA----DGSISG 99 N ++ ASS +GK +T A DG +G Sbjct: 88 YAINTISYASSMVGKTVTMAEVDEDGKFTG 117 >gi|218235843|ref|YP_002366438.1| flagellar basal body rod modification protein [Bacillus cereus B4264] gi|229109209|ref|ZP_04238808.1| Flagellar hook assembly protein [Bacillus cereus Rock1-15] gi|218163800|gb|ACK63792.1| flagellar hook assembly protein family protein [Bacillus cereus B4264] gi|228674219|gb|EEL29464.1| Flagellar hook assembly protein [Bacillus cereus Rock1-15] Length = 192 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 6/120 (5%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASE---QVAQLAVFSQMEQSVQMNSTLQELL 74 K+ +G+D FLKL ++ +HQDP M ++ Q AQL++ Q++ + LQ + Sbjct: 46 KTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDKLQSTM 105 Query: 75 KSNNLAQASSYIGKNITNADG---SISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 S L ++GK + DG ++G V ++++ + ++N + + R+S+ Sbjct: 106 YSTALDGGMKFLGKYVRGVDGEGNKVTGQVETVRLAENNDVQLVINNKVVSLRFVERVSD 165 >gi|47566135|ref|ZP_00237173.1| Basal-body rod modification protein flgD [Bacillus cereus G9241] gi|47557052|gb|EAL15382.1| Basal-body rod modification protein flgD [Bacillus cereus G9241] Length = 192 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 6/120 (5%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---L 74 K+ +G+D FLKL + +HQDP M ++ + Q A S MEQ M + L + Sbjct: 46 KTPGVMGKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDSLKTTM 105 Query: 75 KSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 S + ++GK + DG+ ++G V ++++ + +DN + + R+S+ Sbjct: 106 YSTAIDGGMKFLGKYVRGVDGNGKKVTGQVETVRLAENNEVQLVIDNKVVSLRFVERVSD 165 >gi|262404541|ref|ZP_06081096.1| flagellar basal-body rod modification protein FlgD [Vibrio sp. RC586] gi|262349573|gb|EEY98711.1| flagellar basal-body rod modification protein FlgD [Vibrio sp. RC586] Length = 235 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 51/83 (61%), Gaps = 3/83 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 Q++ ++ +K+L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+ Sbjct: 24 QKKPDETTGQKSLKQEDFLSLLTKQLAQQDPFKPVGNDQMIAQMASFATVDGIGKMNTQF 83 Query: 71 QEL---LKSNNLAQASSYIGKNI 90 + L + SN QASS +G+++ Sbjct: 84 ESLNSSMTSNQALQASSLVGRDV 106 >gi|260752885|ref|YP_003225778.1| flagellar hook capping protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552248|gb|ACV75194.1| flagellar hook capping protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 230 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 50/84 (59%), Gaps = 10/84 (11%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST---LQELLKSNNLAQASS 84 FL LL TQ+K+QDP P+ ++ AQ+A FS + Q+N+T +Q + ++ L S+ Sbjct: 42 FLTLLTTQLKYQDPDSPVDNTQMAAQMAQFSSVAGINQLNTTVSSIQSDVSNSRLGNVSN 101 Query: 85 YIGK------NI-TNADGSISGVV 101 +IGK NI T+ DG+ +G V Sbjct: 102 WIGKAGLVSSNIATSIDGTFAGQV 125 >gi|149195337|ref|ZP_01872424.1| Flagellar hook capping protein [Caminibacter mediatlanticus TB-2] gi|149134529|gb|EDM23018.1| Flagellar hook capping protein [Caminibacter mediatlanticus TB-2] Length = 223 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 3/82 (3%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 IN V + +F + + + L +DAF++L + Q++ QDPT+PM + + Q A S ME Sbjct: 6 INNNVTTSGNDFVYNPNSQ-LDKDAFMQLFLKQLEMQDPTDPMDTDKMLEQTAYLSTMEM 64 Query: 63 SVQMNSTLQELLKSNNLAQASS 84 + M +TL L +N L Q SS Sbjct: 65 NQNMQTTLDNL--ANTLQQTSS 84 >gi|258621048|ref|ZP_05716082.1| flagellar basal body rod modification protein [Vibrio mimicus VM573] gi|258625276|ref|ZP_05720184.1| flagellar basal body rod modification protein [Vibrio mimicus VM603] gi|262166283|ref|ZP_06034020.1| flagellar basal-body rod modification protein FlgD [Vibrio mimicus VM223] gi|262170824|ref|ZP_06038502.1| flagellar basal-body rod modification protein FlgD [Vibrio mimicus MB-451] gi|258582449|gb|EEW07290.1| flagellar basal body rod modification protein [Vibrio mimicus VM603] gi|258586436|gb|EEW11151.1| flagellar basal body rod modification protein [Vibrio mimicus VM573] gi|261891900|gb|EEY37886.1| flagellar basal-body rod modification protein FlgD [Vibrio mimicus MB-451] gi|262025999|gb|EEY44667.1| flagellar basal-body rod modification protein FlgD [Vibrio mimicus VM223] Length = 235 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 51/83 (61%), Gaps = 3/83 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 Q++ ++ +K+L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+ Sbjct: 24 QKKPDETTGQKSLKQEDFLSLLTKQLAQQDPFKPVGNDQMIAQMASFATVDGIGKMNTQF 83 Query: 71 QEL---LKSNNLAQASSYIGKNI 90 + L + SN QASS +G+++ Sbjct: 84 ESLNSSMTSNQALQASSLVGRDV 106 >gi|27363706|ref|NP_759234.1| flagellar basal body rod modification protein [Vibrio vulnificus CMCP6] gi|37679146|ref|NP_933755.1| flagellar basal body rod modification protein [Vibrio vulnificus YJ016] gi|320157110|ref|YP_004189489.1| flagellar basal-body rod modification protein FlgD [Vibrio vulnificus MO6-24/O] gi|27359822|gb|AAO08761.1| Flagellar basal-body rod modification protein flgD [Vibrio vulnificus CMCP6] gi|37197888|dbj|BAC93726.1| flagellar hook capping protein FlgD [Vibrio vulnificus YJ016] gi|319932422|gb|ADV87286.1| flagellar basal-body rod modification protein FlgD [Vibrio vulnificus MO6-24/O] Length = 235 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 3/75 (4%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LK 75 K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MNS + L + Sbjct: 32 GKQELKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNSQFESLNSSMT 91 Query: 76 SNNLAQASSYIGKNI 90 SN QASS +G+++ Sbjct: 92 SNQALQASSLVGRDV 106 >gi|168703390|ref|ZP_02735667.1| Flagellar hook capping protein [Gemmata obscuriglobus UQM 2246] Length = 120 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 41/68 (60%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82 +GQD FL+LLI Q+++QDP +P+ + + QLA + + +N+ E+LK + Q Sbjct: 11 VGQDQFLQLLIAQLQNQDPLDPVSNQDFIQQLATLNTVSGIQSLNANFSEMLKLQQITQG 70 Query: 83 SSYIGKNI 90 + +GK I Sbjct: 71 ADLVGKTI 78 >gi|56551508|ref|YP_162347.1| flagellar hook capping protein [Zymomonas mobilis subsp. mobilis ZM4] gi|241761152|ref|ZP_04759241.1| flagellar hook capping protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|56543082|gb|AAV89236.1| flagellar hook capping protein [Zymomonas mobilis subsp. mobilis ZM4] gi|241374771|gb|EER64232.1| flagellar hook capping protein [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 230 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 50/84 (59%), Gaps = 10/84 (11%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST---LQELLKSNNLAQASS 84 FL LL TQ+K+QDP P+ ++ AQ+A FS + Q+N+T +Q + ++ L S+ Sbjct: 42 FLTLLTTQLKYQDPDSPVDNTQMAAQMAQFSSVAGINQLNTTVSSIQSDVSNSRLGNVSN 101 Query: 85 YIGK------NI-TNADGSISGVV 101 +IGK NI T+ DG+ +G V Sbjct: 102 WIGKAGLVSSNIATSIDGTFAGQV 125 >gi|118581833|ref|YP_903083.1| flagellar hook capping protein [Pelobacter propionicus DSM 2379] gi|118504543|gb|ABL01026.1| flagellar hook capping protein [Pelobacter propionicus DSM 2379] Length = 220 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 5/76 (6%) Query: 20 KKTLGQDA--FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS- 76 K +LG D+ FL+L I Q+++QDP P A+ + QL+ S +EQS + L LL + Sbjct: 19 KSSLGMDSSDFLQLFIAQMQYQDPLAPTDATAMMNQLSQLSLVEQSYNQTTALSNLLAAQ 78 Query: 77 -NNLAQAS-SYIGKNI 90 N+L+ S S+IGK + Sbjct: 79 NNSLSMGSVSFIGKTV 94 >gi|91785635|ref|YP_560841.1| flagellar basal body rod modification protein [Burkholderia xenovorans LB400] gi|91689589|gb|ABE32789.1| putative flagellar hook capping protein [Burkholderia xenovorans LB400] Length = 240 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 3/77 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q+ FL+LL+ Q+K+QDPT PM +S+ +QLA + + Q+N+TL L + + +Q Sbjct: 47 QNTFLQLLVAQLKNQDPTNPMDSSQMTSQLAQINTVSGISQLNTTLTSLATQMSAGQQSQ 106 Query: 82 ASSYIGKNITNADGSIS 98 A+ IG + S+S Sbjct: 107 AALLIGSTVLAPGSSVS 123 >gi|254230141|ref|ZP_04923536.1| Flagellar hook capping protein [Vibrio sp. Ex25] gi|262394940|ref|YP_003286794.1| flagellar basal-body rod modification protein FlgD [Vibrio sp. Ex25] gi|151937334|gb|EDN56197.1| Flagellar hook capping protein [Vibrio sp. Ex25] gi|262338534|gb|ACY52329.1| flagellar basal-body rod modification protein FlgD [Vibrio sp. Ex25] Length = 236 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 3/78 (3%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL-- 73 +S K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+ + L Sbjct: 30 ESTGKQDLKQEDFLSLLTKQLSQQDPFKPVSNDQMIAQMASFATVDGIGKMNTQFESLNS 89 Query: 74 -LKSNNLAQASSYIGKNI 90 + SN QASS +G+++ Sbjct: 90 SMTSNQALQASSLVGRDV 107 >gi|84683989|ref|ZP_01011891.1| Possible FlgD protein [Maritimibacter alkaliphilus HTCC2654] gi|84667742|gb|EAQ14210.1| Possible FlgD protein [Rhodobacterales bacterium HTCC2654] Length = 227 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 3/78 (3%) Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72 E KSKS + + FLK+L Q+++QDP P+++S+ QLA FS +EQ VQ N L+ Sbjct: 23 EDPKSKSAISSDFETFLKMLTVQMENQDPLNPIESSDYAVQLATFSGVEQQVQTNDLLKA 82 Query: 73 L---LKSNNLAQASSYIG 87 L L +++ + ++G Sbjct: 83 LQTQLGVMSMSDLAGWVG 100 >gi|307731364|ref|YP_003908588.1| flagellar hook capping protein [Burkholderia sp. CCGE1003] gi|307585899|gb|ADN59297.1| flagellar hook capping protein [Burkholderia sp. CCGE1003] Length = 240 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 3/77 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q+ FL LL+ Q+K+QDPT PM +S+ +QLA + + Q+N+TL L + + +Q Sbjct: 47 QNTFLSLLVAQLKNQDPTNPMDSSQMTSQLAQINTVSGISQLNTTLSSLATQMSAGQQSQ 106 Query: 82 ASSYIGKNITNADGSIS 98 A+ IG + S+S Sbjct: 107 AALLIGSTVLAPGSSVS 123 >gi|296157457|ref|ZP_06840292.1| flagellar hook capping protein [Burkholderia sp. Ch1-1] gi|295892229|gb|EFG72012.1| flagellar hook capping protein [Burkholderia sp. Ch1-1] Length = 240 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 3/77 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q+ FL+LL+ Q+K+QDPT PM +S+ +QLA + + Q+N+TL L + + +Q Sbjct: 47 QNTFLQLLVAQLKNQDPTNPMDSSQMTSQLAQINTVSGISQLNTTLTSLATQMSAGQQSQ 106 Query: 82 ASSYIGKNITNADGSIS 98 A+ IG + S+S Sbjct: 107 AALLIGSTVLAPGSSVS 123 >gi|91225872|ref|ZP_01260841.1| flagellar basal-body rod modification protein D [Vibrio alginolyticus 12G01] gi|269965425|ref|ZP_06179544.1| flagellar basal body rod modification protein [Vibrio alginolyticus 40B] gi|91189522|gb|EAS75798.1| flagellar basal-body rod modification protein D [Vibrio alginolyticus 12G01] gi|269829904|gb|EEZ84134.1| flagellar basal body rod modification protein [Vibrio alginolyticus 40B] Length = 236 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 3/78 (3%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL-- 73 +S K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+ + L Sbjct: 30 ESTGKQDLKQEDFLSLLTKQLSQQDPFKPVSNDQMIAQMASFATVDGIGKMNTQFESLNS 89 Query: 74 -LKSNNLAQASSYIGKNI 90 + SN QASS +G+++ Sbjct: 90 SMTSNQALQASSLVGRDV 107 >gi|170694391|ref|ZP_02885545.1| flagellar hook capping protein [Burkholderia graminis C4D1M] gi|170140814|gb|EDT08988.1| flagellar hook capping protein [Burkholderia graminis C4D1M] Length = 243 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 3/77 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q+ FL LL+ Q+K+QDPT PM +S+ +QLA + + Q+N+TL L + + +Q Sbjct: 50 QNTFLSLLVAQLKNQDPTNPMDSSQMTSQLAQINTVSGISQLNTTLSSLATQMSAGQQSQ 109 Query: 82 ASSYIGKNITNADGSIS 98 A+ IG + S+S Sbjct: 110 AALLIGSTVLAPGSSVS 126 >gi|167568106|ref|ZP_02361022.1| flagellar basal body rod modification protein [Burkholderia oklahomensis EO147] Length = 282 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q FLKLL+TQ+++QDPT P+ +++ +QLA + + Q+N++L L L + Q Sbjct: 71 QTTFLKLLVTQLQNQDPTSPVDSAQMTSQLAQINTVSGIAQLNTSLTSLSSQLTAGQQTQ 130 Query: 82 ASSYIGKNI 90 A+ IG N+ Sbjct: 131 AAMLIGSNV 139 >gi|254973918|ref|ZP_05270390.1| putative basal-body rod modification protein [Clostridium difficile QCD-66c26] gi|255091305|ref|ZP_05320783.1| putative basal-body rod modification protein [Clostridium difficile CIP 107932] gi|255312962|ref|ZP_05354545.1| putative basal-body rod modification protein [Clostridium difficile QCD-76w55] gi|255515721|ref|ZP_05383397.1| putative basal-body rod modification protein [Clostridium difficile QCD-97b34] gi|255648815|ref|ZP_05395717.1| putative basal-body rod modification protein [Clostridium difficile QCD-37x79] gi|260682034|ref|YP_003213319.1| putative basal-body rod modification protein [Clostridium difficile CD196] gi|260685632|ref|YP_003216765.1| putative basal-body rod modification protein [Clostridium difficile R20291] gi|306518930|ref|ZP_07405277.1| putative basal-body rod modification protein [Clostridium difficile QCD-32g58] gi|260208197|emb|CBA60540.1| putative basal-body rod modification protein [Clostridium difficile CD196] gi|260211648|emb|CBE01905.1| putative basal-body rod modification protein [Clostridium difficile R20291] Length = 202 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 7/71 (9%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN------ 78 +D F+K+L+ Q+ +QDP P +E V+QLA F+ +E+ MN L LL +N Sbjct: 59 KDLFMKILVAQMGNQDPMNPQDPTEYVSQLAQFATLEKMSAMNDKLDILLALSNSTLINS 118 Query: 79 -LAQASSYIGK 88 L+ A+S IGK Sbjct: 119 ALSMATSLIGK 129 >gi|239817166|ref|YP_002946076.1| flagellar hook capping protein [Variovorax paradoxus S110] gi|239803743|gb|ACS20810.1| flagellar hook capping protein [Variovorax paradoxus S110] Length = 228 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 3/74 (4%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK---SNNLAQASS 84 FLKLL+TQ+ +QDP PM+ +E +QLA S + ++N+ L L+ +N + QA+S Sbjct: 33 FLKLLVTQLNNQDPLNPMENAELTSQLAQMSTVSGIERLNTALSGLVNQTGANQVLQAAS 92 Query: 85 YIGKNITNADGSIS 98 IG N+ + ++S Sbjct: 93 LIGYNVLSPGNALS 106 >gi|51894132|ref|YP_076823.1| flagellar hook assembly protein [Symbiobacterium thermophilum IAM 14863] gi|51857821|dbj|BAD41979.1| flagellar hook assembly protein [Symbiobacterium thermophilum IAM 14863] Length = 139 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 36/112 (32%), Positives = 60/112 (53%), Gaps = 13/112 (11%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82 LG+ FL+LL+TQ+++QDP P+ E +AQLA FS +EQ + E ++ L+ Sbjct: 30 LGKMEFLQLLVTQLRYQDPLNPIDDREFMAQLAQFSALEQ-------MTENVRWARLSYG 82 Query: 83 SSYIGKNI----TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 S +G + T I G+V A+++ S G + + N EI + I ++ Sbjct: 83 LSLVGAAVKYWGTEGQPEI-GIVYAVRIDS-GEPLLNLGNREIRLEQVIEVA 132 >gi|330830304|ref|YP_004393256.1| flagellar hook capping protein [Aeromonas veronii B565] gi|328805440|gb|AEB50639.1| Flagellar hook capping protein [Aeromonas veronii B565] Length = 246 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 13/94 (13%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ----SVQMNSTLQELLK 75 KK L Q +FLKLL Q+ +QDP +P+ ++ ++Q+ S E S QM + L L+ Sbjct: 26 KKELDQASFLKLLTMQLSYQDPFKPVDNAQMLSQMTSMSTSEGINSLSTQMGN-LNTLMT 84 Query: 76 SNNLAQASSYIGKNI--------TNADGSISGVV 101 S+ QAS+ +G+N+ +GSISGVV Sbjct: 85 SSQALQASALVGQNVLLPSNIGYLEKEGSISGVV 118 >gi|254462177|ref|ZP_05075593.1| possible FlgD protein [Rhodobacterales bacterium HTCC2083] gi|206678766|gb|EDZ43253.1| possible FlgD protein [Rhodobacteraceae bacterium HTCC2083] Length = 224 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 5/85 (5%) Query: 11 QQEFSKSKSKKTLGQD--AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 Q++ ++++ LG D FLK+L Q+++QDP P+ +++ QLA FS +EQ V+ N Sbjct: 17 QRDTNQAQKTAALGSDFETFLKMLTVQMENQDPLNPVDSADYAVQLATFSSVEQQVRTND 76 Query: 69 TLQEL---LKSNNLAQASSYIGKNI 90 L L + S + ++G ++ Sbjct: 77 LLSSLAATMASGGVESLGHWVGMDV 101 >gi|297183503|gb|ADI19633.1| flagellar hook capping protein [uncultured delta proteobacterium HF0770_45N15] Length = 262 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 28/81 (34%), Positives = 49/81 (60%), Gaps = 3/81 (3%) Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSN 77 + LG+ FL LL+TQ+ +QDPT+PMK + + Q+A +EQ +N+ ++++ K Sbjct: 29 RELGKQDFLNLLMTQLANQDPTDPMKPEQMMQQMASLGTVEQLQNLNAQTRQVIGLQKQI 88 Query: 78 NLAQASSYIGKNITNADGSIS 98 A ASS +G+++ S+S Sbjct: 89 ARASASSLLGRDVEVGSTSLS 109 >gi|28897551|ref|NP_797156.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus RIMD 2210633] gi|153839686|ref|ZP_01992353.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus AQ3810] gi|260364610|ref|ZP_05777212.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus K5030] gi|260878285|ref|ZP_05890640.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus AN-5034] gi|260898115|ref|ZP_05906611.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus Peru-466] gi|260901952|ref|ZP_05910347.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus AQ4037] gi|5361007|gb|AAD42914.1|U12817_8 polar flagellar FlgD homolog [Vibrio parahaemolyticus] gi|28805763|dbj|BAC59040.1| polar flagellar FlgD [Vibrio parahaemolyticus RIMD 2210633] gi|149746796|gb|EDM57784.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus AQ3810] gi|308086108|gb|EFO35803.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus Peru-466] gi|308090177|gb|EFO39872.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus AN-5034] gi|308106778|gb|EFO44318.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus AQ4037] gi|308115091|gb|EFO52631.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus K5030] gi|328473454|gb|EGF44302.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus 10329] Length = 235 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 3/77 (3%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--- 73 S K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+ + L Sbjct: 30 STGKQDLKQEDFLSLLTKQLSQQDPFKPVSNDQMIAQMASFATVDGIGKMNTQFESLNSS 89 Query: 74 LKSNNLAQASSYIGKNI 90 + SN QASS +G+++ Sbjct: 90 MTSNQALQASSLVGRDV 106 >gi|187925762|ref|YP_001897404.1| flagellar basal body rod modification protein [Burkholderia phytofirmans PsJN] gi|187716956|gb|ACD18180.1| flagellar hook capping protein [Burkholderia phytofirmans PsJN] Length = 240 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q+ FL+LL+ Q+K+QDPT PM +S+ +QLA + + Q+N+TL L + + +Q Sbjct: 47 QNTFLQLLVAQLKNQDPTNPMDSSQMTSQLAQINTVSGISQLNTTLSSLATQMSAGQQSQ 106 Query: 82 ASSYIGKNI 90 A+ IG + Sbjct: 107 AALLIGSTV 115 >gi|167574224|ref|ZP_02367098.1| flagellar basal body rod modification protein [Burkholderia oklahomensis C6786] Length = 282 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q FLKLL+TQ+++QDPT P+ +++ +QLA + + Q+N++L L L + Q Sbjct: 71 QTTFLKLLVTQLQNQDPTSPVDSAQMTSQLAQINTVSGIAQLNTSLTSLSSQLTAGQQTQ 130 Query: 82 ASSYIGKNI 90 A+ IG N+ Sbjct: 131 AAMLIGSNV 139 >gi|291519590|emb|CBK74811.1| Flagellar hook capping protein [Butyrivibrio fibrisolvens 16/4] Length = 273 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/99 (34%), Positives = 55/99 (55%), Gaps = 17/99 (17%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME--QSVQMNSTLQELLKSNNLA-- 80 Q+ FL+LL+ ++++QDP EP + VAQLA F+Q+E QSVQ N++A Sbjct: 46 QEMFLQLLVAEMQYQDPLEPTDNGQYVAQLASFTQIEAIQSVQ-----------NDMATI 94 Query: 81 QASSYIGKNITNADGS--ISGVVNAIQVSSTGLTAITVD 117 +A+S +GK + D + + G VN + G + V+ Sbjct: 95 EANSLVGKYVVINDNNKEVRGKVNFVSQDDDGTMYVNVN 133 >gi|253998489|ref|YP_003050552.1| flagellar hook capping protein [Methylovorus sp. SIP3-4] gi|253985168|gb|ACT50025.1| flagellar hook capping protein [Methylovorus sp. SIP3-4] Length = 218 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 3/79 (3%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74 S S S QD F+ LLITQ+K QDP PM ++ +QLA S + ++NST++ ++ Sbjct: 17 SGSGSTAADAQDRFMTLLITQMKSQDPLNPMDNAQVTSQLAQLSTVTGIDKLNSTMESMI 76 Query: 75 ---KSNNLAQASSYIGKNI 90 +S+ QAS+ IG+ + Sbjct: 77 SNVQSSQTYQASNMIGRYV 95 >gi|90408059|ref|ZP_01216230.1| flagellar basal body rod modification protein [Psychromonas sp. CNPT3] gi|90310816|gb|EAS38930.1| flagellar basal body rod modification protein [Psychromonas sp. CNPT3] Length = 232 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 4/94 (4%) Query: 1 MEINTEVNPTQQEFSKSKSKKT-LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59 + +N + P Q +K KK L Q+ F LL Q+ +QDP +P+ SE +AQ+A F+ Sbjct: 10 LNLNKPLTPEQVSANKDVDKKQQLEQEDFFALLSQQLAYQDPFKPVDNSEMIAQMASFTT 69 Query: 60 MEQSVQMN---STLQELLKSNNLAQASSYIGKNI 90 E +M + L+ +L S+ +ASS +GK + Sbjct: 70 AEGITKMGNEFAGLKGVLSSSQALEASSLVGKKV 103 >gi|157373208|ref|YP_001471808.1| flagellar hook capping protein [Shewanella sediminis HAW-EB3] gi|157315582|gb|ABV34680.1| flagellar hook capping protein [Shewanella sediminis HAW-EB3] Length = 221 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 45/65 (69%), Gaps = 3/65 (4%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME--QSVQMNSTLQELLKSN-NLAQASS 84 F+ L+I QI++QDPT P+ ++E V QLA FSQ+E + +++N + Q ++ N + Q++ Sbjct: 33 FMTLMIAQIQNQDPTNPIDSTEYVTQLAQFSQVESLEQMRLNQSTQMVMMENLGIVQSAQ 92 Query: 85 YIGKN 89 IGK+ Sbjct: 93 LIGKD 97 >gi|302874595|ref|YP_003843228.1| flagellar hook capping protein [Clostridium cellulovorans 743B] gi|307690794|ref|ZP_07633240.1| flagellar hook capping protein [Clostridium cellulovorans 743B] gi|302577452|gb|ADL51464.1| flagellar hook capping protein [Clostridium cellulovorans 743B] Length = 217 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 44/70 (62%), Gaps = 7/70 (10%) Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA 80 KT ++ F++LL Q+K+QDP+ P +++ VAQ+A FS +EQ +N+T+ + Sbjct: 39 KTTDKNMFVRLLSAQLKNQDPSNPADSTQYVAQMAQFSALEQMTNLNTTM-------TFS 91 Query: 81 QASSYIGKNI 90 A++ +GK + Sbjct: 92 SANNLVGKTV 101 >gi|271500065|ref|YP_003333090.1| flagellar hook capping protein [Dickeya dadantii Ech586] gi|270343620|gb|ACZ76385.1| flagellar hook capping protein [Dickeya dadantii Ech586] Length = 223 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 44/69 (63%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q++FL LL+ Q+K+QDPT PM ++ V+QLA + + ++N+TL + + SN Q Sbjct: 31 QNSFLTLLVAQLKNQDPTNPMDNNQLVSQLAQLNTVSGIEKLNTTLGSISTQINSNQSIQ 90 Query: 82 ASSYIGKNI 90 A+S IG + Sbjct: 91 AASLIGHGV 99 >gi|307131610|ref|YP_003883626.1| flagellar basal-body rod modification protein flgD [Dickeya dadantii 3937] gi|306529139|gb|ADM99069.1| Flagellar basal-body rod modification protein flgD [Dickeya dadantii 3937] Length = 223 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 44/69 (63%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q++FL LL+ Q+K+QDPT PM ++ V+QLA + + ++N+TL + + SN Q Sbjct: 31 QNSFLTLLVAQLKNQDPTNPMDNNQLVSQLAQLNTVSGIEKLNTTLGSISTQINSNQSIQ 90 Query: 82 ASSYIGKNI 90 A+S IG + Sbjct: 91 AASLIGHGV 99 >gi|222824501|ref|YP_002576075.1| flagellar hook assembly protein FlgD [Campylobacter lari RM2100] gi|222539722|gb|ACM64823.1| flagellar hook assembly protein FlgD [Campylobacter lari RM2100] Length = 335 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 35/54 (64%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 L +DAFLKLL+ +++HQDPT+PM + + Q A S +E N T+ +L+ + Sbjct: 45 LDKDAFLKLLLIELQHQDPTDPMDTEKMLTQTAQLSALEMQDNTNKTMTQLVDA 98 >gi|238919258|ref|YP_002932773.1| basal-body rod modification protein FlgD [Edwardsiella ictaluri 93-146] gi|238868827|gb|ACR68538.1| basal-body rod modification protein FlgD [Edwardsiella ictaluri 93-146] Length = 244 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q++FL LL+ Q+++QDPT P+K +E QLA S + ++N+TL + + SN Q Sbjct: 34 QNSFLTLLVAQLRNQDPTNPLKNNELTTQLAQISTVSGIEKLNTTLGSISGQINSNQSIQ 93 Query: 82 ASSYIGKNI 90 A+S IG + Sbjct: 94 ATSLIGHGV 102 >gi|186477696|ref|YP_001859166.1| flagellar basal body rod modification protein [Burkholderia phymatum STM815] gi|184194155|gb|ACC72120.1| flagellar hook capping protein [Burkholderia phymatum STM815] Length = 237 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 3/65 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q+ FL+LLI Q+K+QDPT PM +S+ +QLA + + Q+NS+L L L +N Q Sbjct: 44 QNTFLQLLIAQMKNQDPTSPMDSSQMTSQLAQINTVTGIGQLNSSLTSLASQLTTNQQTQ 103 Query: 82 ASSYI 86 A++ I Sbjct: 104 AANLI 108 >gi|312882660|ref|ZP_07742397.1| flagellar basal body rod modification protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309369621|gb|EFP97136.1| flagellar basal body rod modification protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 236 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 52/94 (55%), Gaps = 11/94 (11%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LK 75 K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+ + L + Sbjct: 33 GKQDLKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNNQFETLNASMT 92 Query: 76 SNNLAQASSYIGKN--------ITNADGSISGVV 101 SN QASS +G++ + DGS++ +V Sbjct: 93 SNQALQASSLVGRDVLVPGASGVKTGDGSMAAMV 126 >gi|23092314|gb|AAN08639.1| FlgD [Aeromonas hydrophila] Length = 244 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 34/94 (36%), Positives = 54/94 (57%), Gaps = 13/94 (13%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ----SVQMNSTLQELLK 75 KK L Q +FLKLL Q+ +QDP +P+ ++ ++Q++ S E S QM +++ Sbjct: 25 KKELDQASFLKLLTMQLSYQDPFKPVDNAQMLSQMSSMSTSEGIASLSTQMGKLNDQMIS 84 Query: 76 SNNLAQASSYIGKNI--------TNADGSISGVV 101 S L QASS +G+N+ + +GS+SGVV Sbjct: 85 SQAL-QASSLVGQNVLLQSNMGYLDKEGSLSGVV 117 >gi|84388090|ref|ZP_00990986.1| flagellar basal body rod modification protein [Vibrio splendidus 12B01] gi|84377157|gb|EAP94027.1| flagellar basal body rod modification protein [Vibrio splendidus 12B01] Length = 237 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 45/75 (60%), Gaps = 3/75 (4%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LK 75 K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+ + L + Sbjct: 34 GKQDLKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNTQFESLNSSMT 93 Query: 76 SNNLAQASSYIGKNI 90 SN QASS +G+++ Sbjct: 94 SNQALQASSLVGRDV 108 >gi|30248321|ref|NP_840391.1| flagellar basal body rod modification protein [Nitrosomonas europaea ATCC 19718] gi|30138207|emb|CAD84215.1| putative basal-body rod modification protein FlgD [Nitrosomonas europaea ATCC 19718] Length = 223 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 46/69 (66%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA---Q 81 QD FLKLL+TQ+++QDP PM +E +Q+A S + ++N+TL++L+ ++ + Sbjct: 32 QDRFLKLLVTQMQNQDPLSPMDNAEVTSQMAQISTVSGIDKLNTTLEKLVADSDARRSFE 91 Query: 82 ASSYIGKNI 90 A++ IG+ + Sbjct: 92 AATMIGRGV 100 >gi|254463880|ref|ZP_05077291.1| flagellar hook capping protein [Rhodobacterales bacterium Y4I] gi|206684788|gb|EDZ45270.1| flagellar hook capping protein [Rhodobacterales bacterium Y4I] Length = 225 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 3/65 (4%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQA 82 + F+K+L Q +QDP EP+ ++E AQLA FS +EQ + N+ L+ L L N+A Sbjct: 33 ETFVKMLTAQATNQDPLEPLDSTEYAAQLAQFSMVEQQTKSNTLLEGLQSQLGLANMAAL 92 Query: 83 SSYIG 87 S ++G Sbjct: 93 SGWVG 97 >gi|76581470|gb|ABA50945.1| basal-body rod modification protein FlgD [Burkholderia pseudomallei 1710b] Length = 459 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N+ L L L + Q Sbjct: 248 QTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTALTSLSSQLTAGQQTQ 307 Query: 82 ASSYIGKNI 90 A+ IG N+ Sbjct: 308 AAMLIGSNV 316 >gi|91776308|ref|YP_546064.1| flagellar hook capping protein [Methylobacillus flagellatus KT] gi|91710295|gb|ABE50223.1| flagellar hook capping protein [Methylobacillus flagellatus KT] Length = 228 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS---NNLAQ 81 QD F+KLLI Q+K+QDP PM +E +Q+A S + +MN++L + S Q Sbjct: 31 QDRFMKLLIAQMKNQDPLNPMDNAEVTSQMAQLSTVTGIEKMNASLSTFISSMQATQALQ 90 Query: 82 ASSYIGKNI 90 ASS IG + Sbjct: 91 ASSLIGNTV 99 >gi|57505770|ref|ZP_00371696.1| hook assembly protein, flagella (flgD), putative [Campylobacter upsaliensis RM3195] gi|57016043|gb|EAL52831.1| hook assembly protein, flagella (flgD), putative [Campylobacter upsaliensis RM3195] Length = 274 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 10/85 (11%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK-----SN 77 L +DAFLKLL+ +++HQDPT+PM + + + Q + + +E N+T+Q+++ SN Sbjct: 40 LDKDAFLKLLLIEMQHQDPTDPMDSDKMLTQTSQLAALEMQQNTNNTMQQMVAQMKKLSN 99 Query: 78 NLAQASSY-----IGKNITNADGSI 97 + + S IGK T AD I Sbjct: 100 AMGTSQSIGALGAIGKMATVADNKI 124 >gi|322832563|ref|YP_004212590.1| flagellar hook capping protein [Rahnella sp. Y9602] gi|321167764|gb|ADW73463.1| flagellar hook capping protein [Rahnella sp. Y9602] Length = 234 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 3/67 (4%) Query: 27 AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQAS 83 +FL LL+ Q+K+QDPT PM S+ +QLA S + ++N+TL + + S + QAS Sbjct: 38 SFLTLLVAQLKNQDPTNPMDNSQLTSQLAQISTVSGIEKLNTTLGSISGQITSGSSVQAS 97 Query: 84 SYIGKNI 90 S IG + Sbjct: 98 SLIGHGV 104 >gi|291613037|ref|YP_003523194.1| flagellar hook capping protein [Sideroxydans lithotrophicus ES-1] gi|291583149|gb|ADE10807.1| flagellar hook capping protein [Sideroxydans lithotrophicus ES-1] Length = 220 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 28/67 (41%), Positives = 42/67 (62%), Gaps = 3/67 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 QD FL LL+TQ+K+QDP PM ++ +Q+A S + Q+NST+Q L + ++ Q Sbjct: 28 QDRFLTLLVTQLKNQDPLNPMDNAQVTSQMAQLSTVSGINQLNSTVQALSASMATSQSLQ 87 Query: 82 ASSYIGK 88 A+S IG Sbjct: 88 ATSMIGH 94 >gi|229592131|ref|YP_002874250.1| flagellar basal body rod modification protein [Pseudomonas fluorescens SBW25] gi|229363997|emb|CAY51547.1| flagellar biosynthesis, initiation of hook assembly [Pseudomonas fluorescens SBW25] Length = 241 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 22/41 (53%), Positives = 31/41 (75%) Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 ++LG+DAFL+LL+TQ+K+Q+P P VAQLA FS +E Sbjct: 40 QSLGKDAFLQLLVTQLKNQNPLSPQDNGAFVAQLAQFSSLE 80 >gi|295678059|ref|YP_003606583.1| flagellar hook capping protein [Burkholderia sp. CCGE1002] gi|295437902|gb|ADG17072.1| flagellar hook capping protein [Burkholderia sp. CCGE1002] Length = 235 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 44/69 (63%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q+ FL+LL+ Q+K+QDPT PM +S+ +QLA S ++ +N++L L L ++ AQ Sbjct: 42 QNTFLQLLVAQLKNQDPTNPMDSSQMTSQLAQISTVQGISNLNTSLTSLSTQLSASQQAQ 101 Query: 82 ASSYIGKNI 90 ++ IG + Sbjct: 102 SALLIGSTV 110 >gi|229160716|ref|ZP_04288708.1| Flagellar hook assembly protein [Bacillus cereus R309803] gi|228622731|gb|EEK79565.1| Flagellar hook assembly protein [Bacillus cereus R309803] Length = 192 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 58/123 (47%), Gaps = 6/123 (4%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL- 73 S+ K+ + +D FLKL + +HQDP M ++ + Q A S MEQ M + L Sbjct: 43 SEQKAPGVMEKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDSLR 102 Query: 74 --LKSNNLAQASSYIGKNITNADG---SISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128 + S L ++GK + DG ++G V ++++ + +DN + + R Sbjct: 103 TTMYSTALDGGMKFLGKYVRGVDGEGNKVTGQVETVRLAENNEVQLVIDNKVVSLRFVER 162 Query: 129 ISN 131 +S+ Sbjct: 163 VSD 165 >gi|260574415|ref|ZP_05842419.1| flagellar hook capping protein [Rhodobacter sp. SW2] gi|259023311|gb|EEW26603.1| flagellar hook capping protein [Rhodobacter sp. SW2] Length = 217 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 3/64 (4%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQASS 84 FL+++ TQ+K+QDP P+ +++ QLA FS +EQ + NS L+ + +AQ + Sbjct: 31 FLRMMTTQLKNQDPMNPIDSADYAVQLATFSSVEQQAKTNSLLEAMGAQFGLMGMAQMAG 90 Query: 85 YIGK 88 ++G Sbjct: 91 WVGH 94 >gi|88799020|ref|ZP_01114601.1| Flagellar hook capping protein [Reinekea sp. MED297] gi|88778247|gb|EAR09441.1| Flagellar hook capping protein [Reinekea sp. MED297] Length = 248 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 31/83 (37%), Positives = 50/83 (60%), Gaps = 4/83 (4%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LK 75 S LG+ FL+L+I ++ +QDP +P ++ +A+LA FS +E M++ +EL K Sbjct: 25 SNDELGKTEFLELMIAKLNNQDPLKPQDDAQFIAELAQFSTVEGIQNMSAGFEELATSYK 84 Query: 76 SNNLAQASSYIGKNITNADGSIS 98 S+ QASS +G +T DG+ S Sbjct: 85 SSQALQASSLVGGAVT-IDGNTS 106 >gi|315637838|ref|ZP_07893028.1| flagellar hook assembly protein [Campylobacter upsaliensis JV21] gi|315482079|gb|EFU72693.1| flagellar hook assembly protein [Campylobacter upsaliensis JV21] Length = 285 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 37/52 (71%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74 L +DAFLKLL+ +++HQDPT+PM + + + Q + + +E N+T+Q+++ Sbjct: 41 LDKDAFLKLLLIEMQHQDPTDPMDSDKMLTQTSQLAALEMQQNTNNTMQQMV 92 >gi|254508413|ref|ZP_05120533.1| basal-body rod modification protein FlgD [Vibrio parahaemolyticus 16] gi|219548623|gb|EED25628.1| basal-body rod modification protein FlgD [Vibrio parahaemolyticus 16] Length = 236 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 52/94 (55%), Gaps = 11/94 (11%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LK 75 K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+ + L + Sbjct: 33 GKQDLKQEDFLSLLTKQLSQQDPFKPVSNDQMIAQMASFATVDGIGKMNNQFESLNASMT 92 Query: 76 SNNLAQASSYIGKN--------ITNADGSISGVV 101 SN QASS +G++ + DGS++ +V Sbjct: 93 SNQALQASSLVGRDVLIPGAAGVKKDDGSMAAMV 126 >gi|149188065|ref|ZP_01866360.1| flagellar basal body rod modification protein D [Vibrio shilonii AK1] gi|148838053|gb|EDL54995.1| flagellar basal body rod modification protein D [Vibrio shilonii AK1] Length = 235 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 45/75 (60%), Gaps = 3/75 (4%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LK 75 K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+ + L + Sbjct: 32 GKQDLKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNTQFESLNSSMT 91 Query: 76 SNNLAQASSYIGKNI 90 SN QASS +G+++ Sbjct: 92 SNQALQASSLVGRDV 106 >gi|312962589|ref|ZP_07777079.1| basal-body rod modification protein FlgD [Pseudomonas fluorescens WH6] gi|311283169|gb|EFQ61760.1| basal-body rod modification protein FlgD [Pseudomonas fluorescens WH6] Length = 241 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 22/41 (53%), Positives = 31/41 (75%) Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 ++LG+DAFL+LL+TQ+K+Q+P P VAQLA FS +E Sbjct: 40 QSLGKDAFLQLLVTQLKNQNPLSPQDNGAFVAQLAQFSSLE 80 >gi|126460783|ref|YP_001041897.1| flagellar basal body rod modification protein [Rhodobacter sphaeroides ATCC 17029] gi|126102447|gb|ABN75125.1| flagellar hook capping protein [Rhodobacter sphaeroides ATCC 17029] Length = 222 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 3/64 (4%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS---NNLAQASS 84 FL++L TQ+++QDP PM++ + QLA FS +EQ V+ N L + S L++ + Sbjct: 34 FLRMLTTQLQNQDPMNPMESDDFAMQLATFSGVEQQVKTNEILTGMGASIGVMGLSELAG 93 Query: 85 YIGK 88 +IG+ Sbjct: 94 WIGR 97 >gi|229096238|ref|ZP_04227211.1| Flagellar hook assembly protein [Bacillus cereus Rock3-29] gi|229102352|ref|ZP_04233060.1| Flagellar hook assembly protein [Bacillus cereus Rock3-28] gi|229115193|ref|ZP_04244603.1| Flagellar hook assembly protein [Bacillus cereus Rock1-3] gi|228668333|gb|EEL23765.1| Flagellar hook assembly protein [Bacillus cereus Rock1-3] gi|228680999|gb|EEL35168.1| Flagellar hook assembly protein [Bacillus cereus Rock3-28] gi|228687198|gb|EEL41103.1| Flagellar hook assembly protein [Bacillus cereus Rock3-29] Length = 192 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 29/120 (24%), Positives = 61/120 (50%), Gaps = 6/120 (5%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASE---QVAQLAVFSQMEQSVQMNSTLQELL 74 K+ +G+D FLKL ++ +HQDP M ++ Q AQL++ Q++ + +L+ + Sbjct: 46 KTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDSLRTTM 105 Query: 75 KSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 S L ++GK + DG ++G V ++++ + ++N + + R+S+ Sbjct: 106 YSTALDGGMKFLGKYVRGVDGDGNKVTGQVETVRLAENNDVQLIINNKVVSLRFVERVSD 165 >gi|332994163|gb|AEF04218.1| flagellar basal body rod modification protein [Alteromonas sp. SN2] Length = 229 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 8/102 (7%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LK 75 +++ L Q+ F +L Q+ +QDPT+P+ + VAQ+ F+ + Q+N + + Sbjct: 27 TEQQLSQEDFFAMLTEQLANQDPTKPVDNDQMVAQMTSFTMADGISQLNDKFESFAASMT 86 Query: 76 SNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVD 117 SN QASS IG+N+ + G V + + G++ + V+ Sbjct: 87 SNQALQASSLIGQNVL-----VQGNVGHMSSDAAGVSGVVVN 123 >gi|316936124|ref|YP_004111106.1| flagellar hook capping protein [Rhodopseudomonas palustris DX-1] gi|315603838|gb|ADU46373.1| flagellar hook capping protein [Rhodopseudomonas palustris DX-1] Length = 222 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 43/67 (64%), Gaps = 3/67 (4%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS-NNL--AQASS 84 FL LL+TQ+++Q+P EP ++ V+QL ++ EQ +NS L L S N+L +S+ Sbjct: 33 FLTLLVTQLQNQNPLEPTDTNDFVSQLTSYANFEQQQALNSNLSSLTASLNSLLTLNSSN 92 Query: 85 YIGKNIT 91 YIG+ +T Sbjct: 93 YIGQTVT 99 >gi|167626154|ref|YP_001676448.1| flagellar hook capping protein [Shewanella halifaxensis HAW-EB4] gi|167356176|gb|ABZ78789.1| flagellar hook capping protein [Shewanella halifaxensis HAW-EB4] Length = 220 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 3/65 (4%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQASS 84 F+ L+I QI++QDPT P+ +E V+QLA FSQ+E QM ST ++++ + Q++ Sbjct: 32 FMTLMIAQIQNQDPTNPIDGTEYVSQLAQFSQVESLEQMRANQSTQMVIMENLGIVQSAQ 91 Query: 85 YIGKN 89 +GK+ Sbjct: 92 LVGKD 96 >gi|89069831|ref|ZP_01157166.1| Possible FlgD protein [Oceanicola granulosus HTCC2516] gi|89044632|gb|EAR50748.1| Possible FlgD protein [Oceanicola granulosus HTCC2516] Length = 183 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 4/79 (5%) Query: 31 LLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQASSYIG 87 +L Q+K+QDP P+++++ QLA FSQ+EQ V N ++L E L + L Q + ++G Sbjct: 1 MLTVQLKNQDPLNPVESADYAVQLATFSQVEQQVLTNDLLTSLSEQLGAAGLGQVADWVG 60 Query: 88 KNITNADGSISGVVNAIQV 106 + A ++S V AI V Sbjct: 61 REARVA-AAVSYVGTAIDV 78 >gi|172057881|ref|YP_001814341.1| flagellar hook capping protein [Exiguobacterium sibiricum 255-15] gi|171990402|gb|ACB61324.1| flagellar hook capping protein [Exiguobacterium sibiricum 255-15] Length = 156 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 28/98 (28%), Positives = 55/98 (56%), Gaps = 3/98 (3%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74 +K S ++ +D F+K+LI Q+ +QDPT PM+ E ++Q+A FS +EQ + ++ ++ Sbjct: 18 TKVPSSNSMDKDMFMKILIAQLSNQDPTAPMEDKEFISQMAQFSSLEQMQSIGKGIETMM 77 Query: 75 KSNNLAQASSY---IGKNITNADGSISGVVNAIQVSST 109 + + A +Y IG ++ +++ V+ST Sbjct: 78 LNQHAAALMNYSNLIGNKVSYESETVTKDATGADVTST 115 >gi|224418357|ref|ZP_03656363.1| flagellar basal body rod modification protein [Helicobacter canadensis MIT 98-5491] gi|253827677|ref|ZP_04870562.1| flagellar biosynthesis protein [Helicobacter canadensis MIT 98-5491] gi|313141888|ref|ZP_07804081.1| flagellar basal body rod modification protein [Helicobacter canadensis MIT 98-5491] gi|253511083|gb|EES89742.1| flagellar biosynthesis protein [Helicobacter canadensis MIT 98-5491] gi|313130919|gb|EFR48536.1| flagellar basal body rod modification protein [Helicobacter canadensis MIT 98-5491] Length = 356 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 35/51 (68%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73 LG +AF+KL + Q+K+QDPT PM+ E + Q A +Q+E QM + ++++ Sbjct: 105 LGTEAFMKLFLEQLKNQDPTAPMETQEILTQTAQLTQVEAQTQMKNAMEQM 155 >gi|167835110|ref|ZP_02461993.1| flagellar basal body rod modification protein [Burkholderia thailandensis MSMB43] Length = 268 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N+ L L + ++ Q Sbjct: 57 QTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTALTSLSSQITASQQTQ 116 Query: 82 ASSYIGKNI 90 A+ IG N+ Sbjct: 117 AAMLIGSNV 125 >gi|77464914|ref|YP_354418.1| flagellar basal body rod modification protein [Rhodobacter sphaeroides 2.4.1] gi|77389332|gb|ABA80517.1| Possible FlgD protein [Rhodobacter sphaeroides 2.4.1] Length = 222 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 3/64 (4%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS---NNLAQASS 84 FL++L TQ+++QDP PM++ + QLA FS +EQ V+ N L + S L++ + Sbjct: 34 FLRMLTTQLQNQDPMNPMESDDFAMQLATFSGVEQQVKTNEILTGMGASIGVMGLSELAG 93 Query: 85 YIGK 88 +IG+ Sbjct: 94 WIGR 97 >gi|288958685|ref|YP_003449026.1| flagellar basal-body rod modification protein [Azospirillum sp. B510] gi|288910993|dbj|BAI72482.1| flagellar basal-body rod modification protein [Azospirillum sp. B510] Length = 251 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 46/75 (61%), Gaps = 5/75 (6%) Query: 21 KTLGQD--AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78 K LG + FL +L TQ+K+QDP +P+ ++ QL F+ +EQ++ NS L +L++ + Sbjct: 50 KGLGDNFQTFLTMLTTQMKNQDPLKPLDTNDMTKQLVDFANVEQNIGTNSRLDKLVQLQS 109 Query: 79 LAQAS---SYIGKNI 90 AS +Y+G+ + Sbjct: 110 AGTASTNLAYLGRTV 124 >gi|221640835|ref|YP_002527097.1| flagellar basal body rod modification protein [Rhodobacter sphaeroides KD131] gi|332559813|ref|ZP_08414135.1| FlgD2 [Rhodobacter sphaeroides WS8N] gi|221161616|gb|ACM02596.1| Flagellar hook capping protein [Rhodobacter sphaeroides KD131] gi|332277525|gb|EGJ22840.1| FlgD2 [Rhodobacter sphaeroides WS8N] Length = 222 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 3/64 (4%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS---NNLAQASS 84 FL++L TQ+++QDP PM++ + QLA FS +EQ V+ N L + S L++ + Sbjct: 34 FLRMLTTQLQNQDPMNPMESDDFAMQLATFSGVEQQVKTNEILTGMGASIGVMGLSELAG 93 Query: 85 YIGK 88 +IG+ Sbjct: 94 WIGR 97 >gi|118475635|ref|YP_891219.1| flagellar basal body rod modification protein [Campylobacter fetus subsp. fetus 82-40] gi|118414861|gb|ABK83281.1| flagellar hook assembly protein [Campylobacter fetus subsp. fetus 82-40] Length = 263 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 30/76 (39%), Positives = 48/76 (63%), Gaps = 5/76 (6%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKAS---EQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79 L +DAFLKLL+ ++++QDPTEPM ++ EQ +QLA E + ++ L ++S+ Sbjct: 45 LDKDAFLKLLLVELQYQDPTEPMDSAKMLEQTSQLATLEMQENTNKVMKQLTTQMQSSLS 104 Query: 80 AQASSYIGK--NITNA 93 A S +GK N++NA Sbjct: 105 MTAMSALGKMANLSNA 120 >gi|296282280|ref|ZP_06860278.1| flagellar hook capping protein [Citromicrobium bathyomarinum JL354] Length = 102 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 9/80 (11%) Query: 5 TEVNPTQQEFSKSKSKKT---------LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55 T VNP S S T LGQ FL+LL Q++ QDP EP+ E +AQ+A Sbjct: 2 TSVNPFASATSASSKPNTNTQGRTMDQLGQADFLRLLTVQMQQQDPFEPVDNKEMLAQMA 61 Query: 56 VFSQMEQSVQMNSTLQELLK 75 FS + + + N+TL+++++ Sbjct: 62 QFSSLAGTAETNTTLEKIVE 81 >gi|332669197|ref|YP_004452205.1| flagellar hook capping protein [Cellulomonas fimi ATCC 484] gi|332338235|gb|AEE44818.1| flagellar hook capping protein [Cellulomonas fimi ATCC 484] Length = 151 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 9/106 (8%) Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA 80 K L + AFL LL+ Q+++QDP+ PM +S+ + Q S ME V + T +E Sbjct: 25 KELDKQAFLDLLVAQLRNQDPSAPMDSSQLMTQTTQLSTMESLVALADTQRESFALQMRM 84 Query: 81 QASSYIGKNITNADGSIS---GVVNAIQVSST------GLTAITVD 117 A+ +G+ +T D + + GVV A+ + + G T +T+D Sbjct: 85 AAAQLVGQQVTWTDAAGATQKGVVTAVSYAGSVPTVKIGDTDVTLD 130 >gi|134095098|ref|YP_001100173.1| flagellar basal body rod modification protein [Herminiimonas arsenicoxydans] gi|133739001|emb|CAL62049.1| Basal-body rod modification protein FlgD [Herminiimonas arsenicoxydans] Length = 225 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 3/84 (3%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL--- 74 KS QD FL LL+TQ+K+QDP P+ ++ +QLA S + ++N TL+ ++ Sbjct: 27 KSTAEEAQDRFLTLLVTQMKNQDPLNPLDNAQVTSQLAQLSTVTGIDKLNGTLESMMGSY 86 Query: 75 KSNNLAQASSYIGKNITNADGSIS 98 +SN QA++ IG + +IS Sbjct: 87 QSNQALQAANMIGHGVLAPGSNIS 110 >gi|39995525|ref|NP_951476.1| flagellar hook assembly protein FlgD [Geobacter sulfurreducens PCA] gi|39982288|gb|AAR33749.1| flagellar hook assembly protein FlgD [Geobacter sulfurreducens PCA] gi|298504525|gb|ADI83248.1| flagellar hook capping protein FlgD [Geobacter sulfurreducens KN400] Length = 218 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/77 (45%), Positives = 48/77 (62%), Gaps = 5/77 (6%) Query: 20 KKTLG--QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77 KK+ G +D FLKL +TQ+++QDP P ++E + QLA +Q+EQ+ NS L LL Sbjct: 17 KKSTGMNKDDFLKLFVTQLQNQDPLNPQDSTEFIGQLAQLTQVEQAYNTNSNLSNLLNLV 76 Query: 78 NLA---QASSYIGKNIT 91 N A A S+IGK IT Sbjct: 77 NGATSLSAVSFIGKEIT 93 >gi|326386929|ref|ZP_08208543.1| flagellar hook capping protein [Novosphingobium nitrogenifigens DSM 19370] gi|326208609|gb|EGD59412.1| flagellar hook capping protein [Novosphingobium nitrogenifigens DSM 19370] Length = 90 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/48 (50%), Positives = 32/48 (66%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 LG FLKLL Q+ HQDPT+P+ ++ VAQLA FS + + Q N+ L Sbjct: 28 LGATDFLKLLTAQLNHQDPTQPVDNTQMVAQLAQFSSLAAANQTNTQL 75 >gi|126668557|ref|ZP_01739511.1| Flagellar hook capping protein [Marinobacter sp. ELB17] gi|126626962|gb|EAZ97605.1| Flagellar hook capping protein [Marinobacter sp. ELB17] Length = 224 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 63/114 (55%), Gaps = 15/114 (13%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ----SVQMNSTLQE 72 + K LG++ F++L++ Q+K+Q+P +P E ++QLA FS +E+ S ++S + E Sbjct: 23 ASGKGELGKNEFMELMLAQLKNQNPLDPQDNGEFISQLAQFSSLEEMQKLSGNVDSVIGE 82 Query: 73 LLKSNNLAQASSYIGKNI--------TNADGSISGVVNAIQVSSTGLTAITVDN 118 +S QAS+ +GK + A G ++G V+ +STG +++ N Sbjct: 83 -FRSTKALQASAMVGKTVLVASDLAMLGASGEVNGTVDV--PASTGGVQVSILN 133 >gi|37525840|ref|NP_929184.1| flagellar basal body rod modification protein [Photorhabdus luminescens subsp. laumondii TTO1] gi|36785269|emb|CAE14210.1| Basal-body rod modification protein FlgD (flagellar protein for the initiation of hook assembly) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 231 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 42/66 (63%), Gaps = 3/66 (4%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQASS 84 F+KLL+ Q+K+QDPT PMK +E + LA + + ++N+TL + + +N QAS+ Sbjct: 35 FMKLLVAQMKNQDPTNPMKNNELTSHLAQINTLAGIEKLNTTLGSIVGQINNNQPVQASA 94 Query: 85 YIGKNI 90 IG+ + Sbjct: 95 LIGRGV 100 >gi|209695763|ref|YP_002263693.1| flagellar basal body rod modification protein [Aliivibrio salmonicida LFI1238] gi|208009716|emb|CAQ80020.1| flagellar basal-body rod protein FlgD [Aliivibrio salmonicida LFI1238] Length = 236 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 3/75 (4%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LK 75 K L Q+ FL LL Q+ QDP++P++ + +AQ+A F+ ++ +MN L + Sbjct: 33 GKNELKQEDFLALLTKQLSQQDPSKPVENDQMIAQMASFATVDGIGKMNKQFDSLNTSMT 92 Query: 76 SNNLAQASSYIGKNI 90 SN QASS +G+++ Sbjct: 93 SNQALQASSLVGRDV 107 >gi|255523698|ref|ZP_05390664.1| flagellar hook capping protein [Clostridium carboxidivorans P7] gi|296186701|ref|ZP_06855103.1| flagellar hook capping protein [Clostridium carboxidivorans P7] gi|255512567|gb|EET88841.1| flagellar hook capping protein [Clostridium carboxidivorans P7] gi|296048738|gb|EFG88170.1| flagellar hook capping protein [Clostridium carboxidivorans P7] Length = 235 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 15/94 (15%) Query: 5 TEVNPTQQEFSKSKSKKTL----GQD----AFLKLLITQIKHQDPTEPMKASEQVAQLAV 56 ++VN T + S+ T GQD AF K+L ++ +QDP+ +E V+Q+A Sbjct: 11 SDVNKTNDSNATKTSRGTRIVKKGQDMDKNAFFKILAAELSNQDPSNAKDGTEYVSQMAQ 70 Query: 57 FSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNI 90 FS +EQ V +N+T++ L A++ IGK + Sbjct: 71 FSSLEQMVNLNTTMK-------LTGANNLIGKTV 97 >gi|218532350|ref|YP_002423166.1| flagellar hook capping protein [Methylobacterium chloromethanicum CM4] gi|218524653|gb|ACK85238.1| flagellar hook capping protein [Methylobacterium chloromethanicum CM4] Length = 226 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 50/79 (63%), Gaps = 4/79 (5%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNLAQASS 84 FL LL TQ+K+Q+P +P+ ++ QL F+ +EQ ++ NS+L +L K+ + + AS Sbjct: 35 FLTLLTTQLKNQNPLDPLDTNQFTQQLVQFAGVEQQLKTNSSLDTILTNSKAASASSASG 94 Query: 85 YIGKNITNADGSISGVVNA 103 IG+ IT ADG+ + + N Sbjct: 95 LIGRTIT-ADGATTDLTNG 112 >gi|269138581|ref|YP_003295281.1| flagellar basal body rod modification protein [Edwardsiella tarda EIB202] gi|267984241|gb|ACY84070.1| flagellar basal body rod modification protein [Edwardsiella tarda EIB202] gi|304558591|gb|ADM41255.1| Flagellar basal-body rod modification protein FlgD [Edwardsiella tarda FL6-60] Length = 232 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q++FL LL+ Q+++QDPT P++ +E QLA S + ++N+TL + + SN Q Sbjct: 34 QNSFLTLLVAQLRNQDPTNPLQNNELTTQLAQISTVSGIEKLNTTLGSISGQINSNQSIQ 93 Query: 82 ASSYIGKNI 90 ASS IG + Sbjct: 94 ASSLIGHGV 102 >gi|124516304|gb|EAY57812.1| probable flagellar hook capping protein FlgD [Leptospirillum rubarum] Length = 276 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/113 (27%), Positives = 58/113 (51%), Gaps = 10/113 (8%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN-- 77 ++ LG FL L+I+Q+++QDP P+ + AQLA FSQ++Q +N + + Sbjct: 30 RQKLGMGDFLHLMISQLQYQDPLHPLNNTRFAAQLAQFSQLDQLTHLNRGVGTIAHDGAD 89 Query: 78 -NLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129 N ++G+ +T + G NA +++ +G ++T T + +RI Sbjct: 90 ANKMMMVGFLGQRVT-----MKG--NAFRLAPSGNVSLTYRQTGASQSGHLRI 135 >gi|270262402|ref|ZP_06190673.1| flagellar basal body rod modification protein [Serratia odorifera 4Rx13] gi|270043086|gb|EFA16179.1| flagellar basal body rod modification protein [Serratia odorifera 4Rx13] Length = 225 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 4/79 (5%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL- 73 +KS + + L Q+ FL LL+ Q+K+QDPT PM+ +E QLA + ++ ++N+TL + Sbjct: 20 AKSNTGQDL-QNNFLTLLVAQLKNQDPTNPMQNNELTTQLAQINTVQGIEKLNTTLGSIS 78 Query: 74 --LKSNNLAQASSYIGKNI 90 + SN QA++ IG + Sbjct: 79 GQINSNQSLQATALIGHGV 97 >gi|59712482|ref|YP_205258.1| flagellar basal body rod modification protein [Vibrio fischeri ES114] gi|197335727|ref|YP_002156701.1| flagellar basal body rod modification protein [Vibrio fischeri MJ11] gi|24459276|gb|AAL86629.1| FlgD [Vibrio fischeri ES114] gi|59480583|gb|AAW86370.1| flagellar hook capping protein FlgD [Vibrio fischeri ES114] gi|197317217|gb|ACH66664.1| flagellar basal body rod modification protein [Vibrio fischeri MJ11] Length = 236 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 6/88 (6%) Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65 E N T++ + K L Q+ FL LL Q+ QDP +P++ + +AQ+A F+ ++ + Sbjct: 23 EANKTEK---TTGGKNELKQEDFLSLLTKQLSQQDPFKPVENDQMIAQMASFATVDGIGK 79 Query: 66 MNSTLQEL---LKSNNLAQASSYIGKNI 90 MN+ L + SN QASS +G+++ Sbjct: 80 MNTQFDSLNSSMTSNQALQASSLVGRDV 107 >gi|163853492|ref|YP_001641535.1| flagellar hook capping protein [Methylobacterium extorquens PA1] gi|163665097|gb|ABY32464.1| flagellar hook capping protein [Methylobacterium extorquens PA1] Length = 226 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 50/79 (63%), Gaps = 4/79 (5%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNLAQASS 84 FL LL TQ+K+Q+P +P+ ++ QL F+ +EQ ++ NS+L +L K+ + + AS Sbjct: 35 FLTLLTTQLKNQNPLDPLDTNQFTQQLVQFAGVEQQLKTNSSLDTILTNSKAASASSASG 94 Query: 85 YIGKNITNADGSISGVVNA 103 IG+ IT ADG+ + + N Sbjct: 95 LIGRTIT-ADGATTDLTNG 112 >gi|315497624|ref|YP_004086428.1| flagellar hook capping protein [Asticcacaulis excentricus CB 48] gi|315415636|gb|ADU12277.1| flagellar hook capping protein [Asticcacaulis excentricus CB 48] Length = 224 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 2/63 (3%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--LKSNNLAQASSY 85 FL LL QIK+QDP PM +++ QL ++ +EQ ++ N L+ L L + N+A + + Sbjct: 32 FLGLLTAQIKNQDPLSPMDSTQWTNQLVQYTSVEQQLKANEYLKSLVGLGAGNMASSVNM 91 Query: 86 IGK 88 IGK Sbjct: 92 IGK 94 >gi|261253615|ref|ZP_05946188.1| flagellar basal-body rod modification protein FlgD [Vibrio orientalis CIP 102891] gi|260937006|gb|EEX92995.1| flagellar basal-body rod modification protein FlgD [Vibrio orientalis CIP 102891] Length = 237 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 3/75 (4%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS---TLQELLK 75 K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+ TL + Sbjct: 34 GKQDLKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNNQFETLNASMT 93 Query: 76 SNNLAQASSYIGKNI 90 SN QASS +G+++ Sbjct: 94 SNQALQASSLVGRDV 108 >gi|240140912|ref|YP_002965392.1| putative flagellar basal-body rod modification protein (Synonyms : FlgD flaV, fla FIV, fla FVI) [Methylobacterium extorquens AM1] gi|240010889|gb|ACS42115.1| putative flagellar basal-body rod modification protein (Synonyms : FlgD flaV, fla FIV, fla FVI) [Methylobacterium extorquens AM1] Length = 226 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 50/79 (63%), Gaps = 4/79 (5%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNLAQASS 84 FL LL TQ+K+Q+P +P+ ++ QL F+ +EQ ++ NS+L +L K+ + + AS Sbjct: 35 FLTLLTTQLKNQNPLDPLDTNQFTQQLVQFAGVEQQLKTNSSLDTILTNSKAASASSASG 94 Query: 85 YIGKNITNADGSISGVVNA 103 IG+ IT ADG+ + + N Sbjct: 95 LIGRTIT-ADGAATDLTNG 112 >gi|153950222|ref|YP_001401291.1| flagellar basal body rod modification protein [Yersinia pseudotuberculosis IP 31758] gi|152961717|gb|ABS49178.1| basal-body rod modification protein FlgD [Yersinia pseudotuberculosis IP 31758] Length = 228 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q++FL LL+ Q+K+QDPT PM+ +E QLA + + ++N+TL + + SN Sbjct: 32 QNSFLTLLVAQLKNQDPTNPMENNELTTQLAQINTVSGIEKLNTTLGAITGQIDSNQSLY 91 Query: 82 ASSYIGKNI 90 A+S IG+ + Sbjct: 92 ATSLIGRGV 100 >gi|312968851|ref|ZP_07783058.1| basal-body rod modification protein flgD [Escherichia coli 2362-75] gi|312286253|gb|EFR14166.1| basal-body rod modification protein flgD [Escherichia coli 2362-75] Length = 231 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 44/69 (63%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA+ S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLALISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNI 90 AS+ IG + Sbjct: 92 ASNLIGHGV 100 >gi|254563422|ref|YP_003070517.1| flagellar basal-body rod modification protein [Methylobacterium extorquens DM4] gi|254270700|emb|CAX26704.1| putative flagellar basal-body rod modification protein (Synonyms : FlgD flaV, fla FIV, fla FVI) [Methylobacterium extorquens DM4] Length = 226 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 50/79 (63%), Gaps = 4/79 (5%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNLAQASS 84 FL LL TQ+K+Q+P +P+ ++ QL F+ +EQ ++ NS+L +L K+ + + AS Sbjct: 35 FLTLLTTQLKNQNPLDPLDTNQFTQQLVQFAGVEQQLKTNSSLDTILTNSKAASASSASG 94 Query: 85 YIGKNITNADGSISGVVNA 103 IG+ IT ADG+ + + N Sbjct: 95 LIGRTIT-ADGAATDLTNG 112 >gi|15643438|ref|NP_228482.1| basal-body rod modification protein FlgD [Thermotoga maritima MSB8] gi|4981197|gb|AAD35757.1|AE001740_3 basal-body rod modification protein FlgD [Thermotoga maritima MSB8] Length = 224 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 47/72 (65%), Gaps = 3/72 (4%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK---SNNL 79 L ++AFL+LL+ +++ QDP EPM+ + ++QL+ + +EQ + S +++ ++ S + Sbjct: 27 LDKEAFLRLLLQELEMQDPLEPMETKDMISQLSQLTSLEQITNLTSAVKDFVEAQTSVSP 86 Query: 80 AQASSYIGKNIT 91 AQ +S IGK + Sbjct: 87 AQLASLIGKYVV 98 >gi|315125983|ref|YP_004067986.1| LfgD [Pseudoalteromonas sp. SM9913] gi|315014497|gb|ADT67835.1| LfgD [Pseudoalteromonas sp. SM9913] Length = 217 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 54/87 (62%), Gaps = 13/87 (14%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME--QSVQMNSTLQELLKSNNLA--QAS 83 FL+LL+ QI +Q+P +PM ++ V+QLA FS +E QS++ N T L ++LA +A+ Sbjct: 33 FLELLVAQISNQNPLQPMDGTQYVSQLAEFSNVESLQSIRQN-TADGLDYVSSLAVLEAT 91 Query: 84 SYIGKNIT--------NADGSISGVVN 102 + +G+ + DGS+SG+VN Sbjct: 92 NMVGQTVDVQASSIALEQDGSVSGMVN 118 >gi|260772273|ref|ZP_05881189.1| flagellar basal-body rod modification protein FlgD [Vibrio metschnikovii CIP 69.14] gi|260611412|gb|EEX36615.1| flagellar basal-body rod modification protein FlgD [Vibrio metschnikovii CIP 69.14] Length = 235 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 50/83 (60%), Gaps = 3/83 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 Q++ +++ ++ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN Sbjct: 24 QKKPTETTGQQELKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNGQF 83 Query: 71 QEL---LKSNNLAQASSYIGKNI 90 + L + SN QASS +G+++ Sbjct: 84 ESLNSAMTSNQALQASSLVGRDV 106 >gi|284989549|ref|YP_003408103.1| flagellar hook capping protein [Geodermatophilus obscurus DSM 43160] gi|284062794|gb|ADB73732.1| flagellar hook capping protein [Geodermatophilus obscurus DSM 43160] Length = 140 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 61/104 (58%), Gaps = 4/104 (3%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82 +G+D FL+LL+ Q+++QDP P +E ++Q A F+Q+E+ ++ + L+ A Sbjct: 26 MGKDVFLQLLVAQMRYQDPNSPASTTEFMSQTATFTQVEKLEEIAAQNASLVALQRSLSA 85 Query: 83 SSYIGKNITNAD---GSISGVVNAIQVSSTGLTAITVDNTEIPI 123 + +G ++ D +++G V ++++S +A+ VD ++PI Sbjct: 86 GALVGHTVSYTDEGGVTVTGTVGSVRISGDEPSAV-VDGVDVPI 128 >gi|238751761|ref|ZP_04613249.1| Flagellar hook capping protein [Yersinia rohdei ATCC 43380] gi|238710032|gb|EEQ02262.1| Flagellar hook capping protein [Yersinia rohdei ATCC 43380] Length = 230 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q++FL LL+ Q+K+QDPT PM+ +E QLA + + ++N+TL + L S+ Q Sbjct: 34 QNSFLTLLVAQLKNQDPTNPMQNNELTTQLAQINTVSGIEKLNTTLGSISGQLDSSQSLQ 93 Query: 82 ASSYIGKNI 90 AS+ IG + Sbjct: 94 ASTLIGHGV 102 >gi|229017041|ref|ZP_04173961.1| Flagellar hook assembly protein [Bacillus cereus AH1273] gi|229023222|ref|ZP_04179733.1| Flagellar hook assembly protein [Bacillus cereus AH1272] gi|228738147|gb|EEL88632.1| Flagellar hook assembly protein [Bacillus cereus AH1272] gi|228744312|gb|EEL94394.1| Flagellar hook assembly protein [Bacillus cereus AH1273] Length = 192 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/139 (27%), Positives = 68/139 (48%), Gaps = 10/139 (7%) Query: 3 INTEVNPTQQEFSKSKS-KKTLG---QDAFLKLLITQIKHQDPTEPMKASE---QVAQLA 55 +N +P QQ S S +KT G +D FLKL + +HQDP M ++ Q AQL+ Sbjct: 27 VNGVHSPVQQTNGVSASTQKTPGVMEKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLS 86 Query: 56 VFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADG---SISGVVNAIQVSSTGLT 112 + Q++ + +L+ + S L ++GK + DG ++G V ++++ Sbjct: 87 LMEQVQNMTKAVDSLRTTMYSTALDGGMKFLGKYVRGIDGEGNKVTGQVETVRLAENNDV 146 Query: 113 AITVDNTEIPITTGIRISN 131 + +DN + + RIS+ Sbjct: 147 QLVIDNKVVSLRFVERISD 165 >gi|242310748|ref|ZP_04809903.1| flagellar basal body rod modification protein [Helicobacter pullorum MIT 98-5489] gi|239523146|gb|EEQ63012.1| flagellar basal body rod modification protein [Helicobacter pullorum MIT 98-5489] Length = 379 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 35/51 (68%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73 LG +AF++L + Q+K+QDPT PM+ E + Q A +Q+E QM + ++++ Sbjct: 117 LGTEAFMRLFLEQLKNQDPTAPMETQEILTQTAQLTQVEAQTQMKNAMEQM 167 >gi|114765240|ref|ZP_01444372.1| Flagellar hook capping protein [Pelagibaca bermudensis HTCC2601] gi|114542375|gb|EAU45403.1| Flagellar hook capping protein [Roseovarius sp. HTCC2601] Length = 223 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 49/76 (64%), Gaps = 2/76 (2%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74 S S S+ + ++F+ LL QI++Q+P EPM ++ ++QLA SQ+EQSV +N L+ + Sbjct: 19 SSSMSQLSEDYESFITLLTAQIQNQNPLEPMDSTTFISQLAQLSQVEQSVAVNDNLEGI- 77 Query: 75 KSNNLAQASSYIGKNI 90 S+ L+ S+ G N+ Sbjct: 78 -SSQLSSMSAIAGLNL 92 >gi|254440284|ref|ZP_05053778.1| flagellar hook capping protein, putative [Octadecabacter antarcticus 307] gi|198255730|gb|EDY80044.1| flagellar hook capping protein, putative [Octadecabacter antarcticus 307] Length = 233 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 11/97 (11%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ----- 71 ++ K LGQ FLKL+ Q+++QDP PM + VAQ+A FS + +MN T+ Sbjct: 28 AEPKDELGQSDFLKLMTAQLQNQDPFAPMDNGDFVAQMAQFSSVAGISEMNQTMSSIAGQ 87 Query: 72 ----ELLKSNNLAQASSYIGKNITNAD--GSISGVVN 102 ++ S N+ S + NI AD G I G ++ Sbjct: 88 MSQFQVASSVNMLGHSVMMPGNIARADNNGEIQGTLD 124 >gi|89092135|ref|ZP_01165090.1| basal-body rod modification protein FlgD [Oceanospirillum sp. MED92] gi|89083870|gb|EAR63087.1| basal-body rod modification protein FlgD [Oceanospirillum sp. MED92] Length = 235 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 8/71 (11%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME------QSVQMNSTLQELLKSNNL 79 D F++L+I Q+++QDPT P ++ + Q+A SQ+E Q+VQ ST Q +L S Sbjct: 37 DMFMRLMIAQLQNQDPTSPADTNDFMQQIATMSQVESINNLTQTVQ--STSQSMLASQAA 94 Query: 80 AQASSYIGKNI 90 QASS +G+++ Sbjct: 95 LQASSMVGQSV 105 >gi|224373465|ref|YP_002607837.1| flagellar hook capping protein [Nautilia profundicola AmH] gi|223589079|gb|ACM92815.1| flagellar hook capping protein [Nautilia profundicola AmH] Length = 223 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 16/90 (17%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82 L +DAF+KL + +++ QDPT+PM + + Q A S ME + M +L L SN L+ Sbjct: 25 LDKDAFMKLFLAELQMQDPTDPMDTDKMLEQTAYLSTMEMNDNMQKSLDNL--SNVLSTT 82 Query: 83 SSY-----IGK---------NITNADGSIS 98 S + IGK N+T+ D S++ Sbjct: 83 SQFSTLSAIGKMADTGYRYVNVTDDDNSVN 112 >gi|157371208|ref|YP_001479197.1| flagellar basal body rod modification protein [Serratia proteamaculans 568] gi|157322972|gb|ABV42069.1| flagellar hook capping protein [Serratia proteamaculans 568] Length = 225 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 44/68 (64%), Gaps = 3/68 (4%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQA 82 ++FL LL+ Q+K+QDPT PM+ +E +QLA + ++ ++N+TL + + SN QA Sbjct: 30 NSFLTLLVAQLKNQDPTNPMQNNELTSQLAQINTVQGIEKLNTTLGSISGQINSNQSLQA 89 Query: 83 SSYIGKNI 90 S+ IG + Sbjct: 90 SALIGHGV 97 >gi|223039165|ref|ZP_03609455.1| flagellar hook assembly protein [Campylobacter rectus RM3267] gi|222879526|gb|EEF14617.1| flagellar hook assembly protein [Campylobacter rectus RM3267] Length = 234 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 3/69 (4%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASE---QVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79 L +DAF+KLL+T++++QDPT PM + Q +QLA E + +M L + LK++ Sbjct: 36 LDKDAFMKLLLTELQYQDPTSPMDTEKMLTQTSQLAALEMQENTNKMMQKLADQLKNSTN 95 Query: 80 AQASSYIGK 88 A S +GK Sbjct: 96 MYAVSVLGK 104 >gi|332161321|ref|YP_004297898.1| flagellar basal body rod modification protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318605241|emb|CBY26739.1| flagellar basal-body rod modification protein FlgD [Yersinia enterocolitica subsp. palearctica Y11] gi|325665551|gb|ADZ42195.1| flagellar basal body rod modification protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330860607|emb|CBX70904.1| basal-body rod modification protein flgD [Yersinia enterocolitica W22703] Length = 228 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 44/69 (63%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q++FL LL+ Q+K+QDPT PM+ +E QLA + + ++N+TL + + ++ Q Sbjct: 32 QNSFLTLLVAQLKNQDPTNPMQNNELTTQLAQINTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNI 90 ASS IG+ + Sbjct: 92 ASSLIGRGV 100 >gi|218549197|ref|YP_002382988.1| flagellar basal body rod modification protein [Escherichia fergusonii ATCC 35469] gi|218356738|emb|CAQ89366.1| flagellar hook assembly protein [Escherichia fergusonii ATCC 35469] Length = 231 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGAISGQIDNSQSLQ 91 Query: 82 ASSYIGKNI 90 ASS IG + Sbjct: 92 ASSLIGHGV 100 >gi|119899028|ref|YP_934241.1| basal-body rod modification protein FlgD [Azoarcus sp. BH72] gi|119671441|emb|CAL95354.1| probable basal-body rod modification protein FlgD [Azoarcus sp. BH72] Length = 224 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/83 (39%), Positives = 50/83 (60%), Gaps = 11/83 (13%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA---QASS 84 FL LL TQ+++QDP PM+ +E +QLA S +E ++NS + +LL+S A QA++ Sbjct: 36 FLTLLTTQLQNQDPMNPMENAELTSQLAQLSTVEGIEKLNSMMTQLLQSQASAEGLQAAA 95 Query: 85 YI-------GKNITNAD-GSISG 99 + GKN+T D G+I G Sbjct: 96 LVGRGVLVEGKNLTLTDAGAIGG 118 >gi|114330360|ref|YP_746582.1| flagellar basal body rod modification protein [Nitrosomonas eutropha C91] gi|114307374|gb|ABI58617.1| flagellar hook capping protein [Nitrosomonas eutropha C91] Length = 223 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 47/69 (68%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA---Q 81 Q+ FLKLL+TQ+++QDP PM +E +Q+A S + ++NSTL++L+ ++ + Sbjct: 32 QERFLKLLVTQMQNQDPLSPMDNAEVTSQMAQISTVSGIDKLNSTLEKLVSDSDARRSFE 91 Query: 82 ASSYIGKNI 90 A++ IG+++ Sbjct: 92 AANMIGRSV 100 >gi|324113870|gb|EGC07844.1| flagellar hook capping protein [Escherichia fergusonii B253] gi|325497617|gb|EGC95476.1| flagellar basal body rod modification protein [Escherichia fergusonii ECD227] Length = 231 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGAISGQIDNSQSLQ 91 Query: 82 ASSYIGKNI 90 ASS IG + Sbjct: 92 ASSLIGHGV 100 >gi|90579908|ref|ZP_01235716.1| flagellar basal body rod modification protein [Vibrio angustum S14] gi|90438793|gb|EAS63976.1| flagellar basal body rod modification protein [Vibrio angustum S14] Length = 241 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 11/98 (11%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLK 75 K L QD FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN +L + Sbjct: 34 GKNQLKQDDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGINKMNEQFGSLNSAMT 93 Query: 76 SNNLAQASSYIGKNI--------TNADGSISGVVNAIQ 105 SN QASS +G+++ +++G +SG+ Q Sbjct: 94 SNQALQASSLVGQDVLIPNSTAMRSSEGEMSGMTRLTQ 131 >gi|92114099|ref|YP_574027.1| flagellar basal body rod modification protein [Chromohalobacter salexigens DSM 3043] gi|91797189|gb|ABE59328.1| flagellar hook capping protein [Chromohalobacter salexigens DSM 3043] Length = 235 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 42/66 (63%), Gaps = 3/66 (4%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQASS 84 F+ LLITQ+++QDPT+PM S+ AQLA + + ++N +L ++ + + QASS Sbjct: 41 FMTLLITQLQNQDPTKPMDNSDMTAQLAQINTVSGIQELNDSLGDINEQIDAGKTLQASS 100 Query: 85 YIGKNI 90 IG+ + Sbjct: 101 LIGQGV 106 >gi|89075494|ref|ZP_01161905.1| flagellar basal body rod modification protein [Photobacterium sp. SKA34] gi|89048766|gb|EAR54337.1| flagellar basal body rod modification protein [Photobacterium sp. SKA34] Length = 241 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 11/98 (11%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLK 75 K L QD FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN +L + Sbjct: 34 GKNQLKQDDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGINKMNEQFGSLNSAMT 93 Query: 76 SNNLAQASSYIGKNI--------TNADGSISGVVNAIQ 105 SN QASS +G+++ +++G +SG+ Q Sbjct: 94 SNQALQASSLVGQDVLIPNSTAMRSSEGEMSGMTRLTQ 131 >gi|313200564|ref|YP_004039222.1| flagellar hook capping protein [Methylovorus sp. MP688] gi|312439880|gb|ADQ83986.1| flagellar hook capping protein [Methylovorus sp. MP688] Length = 218 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 44/69 (63%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNLAQ 81 QD F+ LLITQ+K QDP PM ++ +QLA S + ++N+T++ ++ +S+ Q Sbjct: 27 QDRFMTLLITQMKSQDPLNPMDNAQVTSQLAQLSTVTGIDKLNTTMESMISNVQSSQTYQ 86 Query: 82 ASSYIGKNI 90 AS+ IG+ + Sbjct: 87 ASNMIGRYV 95 >gi|225159024|ref|ZP_03725334.1| flagellar hook capping protein [Opitutaceae bacterium TAV2] gi|224802403|gb|EEG20665.1| flagellar hook capping protein [Opitutaceae bacterium TAV2] Length = 144 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 2/88 (2%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82 LGQ F KLL Q++ QDP P+ ++ +AQLA FS + QS + + + L + A Sbjct: 28 LGQADFFKLLSVQLQKQDPLNPVDDTQFLAQLAQFSALAQSEALVTQMGYLRADIQMQAA 87 Query: 83 SSYIGKNIT-NADGS-ISGVVNAIQVSS 108 + +GK +T +DG ++G V +I S Sbjct: 88 AGLVGKEVTVVSDGELVTGTVTSIAADS 115 >gi|293395582|ref|ZP_06639865.1| basal-body rod modification protein FlgD [Serratia odorifera DSM 4582] gi|291421901|gb|EFE95147.1| basal-body rod modification protein FlgD [Serratia odorifera DSM 4582] Length = 229 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 ++FL LL+ Q+K+QDPT PM+ +E +QLA + + ++N+TL + + SN Q Sbjct: 33 HNSFLTLLVAQLKNQDPTNPMQNNELTSQLAQINTVSGIEKLNTTLGAISGQINSNQSLQ 92 Query: 82 ASSYIGKNI 90 AS+ IG + Sbjct: 93 ASALIGHGV 101 >gi|254456986|ref|ZP_05070414.1| flagellar hook capping protein [Campylobacterales bacterium GD 1] gi|207085778|gb|EDZ63062.1| flagellar hook capping protein [Campylobacterales bacterium GD 1] Length = 221 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 3/72 (4%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79 K LG+D F+ LL+ +++HQDPTEPM + + + Q + + +E + N L+ L S + Sbjct: 25 KTVLGKDDFMTLLLVELQHQDPTEPMDSEKILTQTSQLAGLESAENTNKALESLAASLSA 84 Query: 80 AQ---ASSYIGK 88 +Q + S IGK Sbjct: 85 SQNFSSISAIGK 96 >gi|330445347|ref|ZP_08308999.1| flagellar hook capping family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489538|dbj|GAA03496.1| flagellar hook capping family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 241 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 3/75 (4%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLK 75 K L QD FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN +L + Sbjct: 34 GKNQLKQDDFLSLLTKQLAQQDPFKPVGNDQMIAQMASFATVDGINKMNEQFGSLNSAMT 93 Query: 76 SNNLAQASSYIGKNI 90 SN QASS +G+++ Sbjct: 94 SNQALQASSLVGQDV 108 >gi|163856434|ref|YP_001630732.1| flagellar basal body rod modification protein [Bordetella petrii DSM 12804] gi|163260162|emb|CAP42464.1| basal-body rod modification protein FlgD [Bordetella petrii] Length = 231 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ--- 81 QD FL LL+TQ+K+QDP PM+ +E +QLA S +E + +TL + +++Q Sbjct: 29 QDRFLTLLVTQLKNQDPLNPMENAELTSQLAQISTVEGITNLKNTLLAISGQIDVSQSMN 88 Query: 82 ASSYIGKNI 90 A S IGK + Sbjct: 89 AVSMIGKGV 97 >gi|260438801|ref|ZP_05792617.1| flagellar hook capping protein [Butyrivibrio crossotus DSM 2876] gi|292808790|gb|EFF67995.1| flagellar hook capping protein [Butyrivibrio crossotus DSM 2876] Length = 149 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 7/92 (7%) Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67 N T + +K +L +DAFL++L ++++QDP EP +E V+Q++ FSQ+E Sbjct: 15 NYTDGKANKKTGSDSLNKDAFLQILAAEMQYQDPLEPSSNTEWVSQMSSFSQIE------ 68 Query: 68 STLQELLKSNNLAQASSYIGKNITNADGSISG 99 +LQ + S + AS+ +GK + D +G Sbjct: 69 -SLQTVSDSISEQGASNLVGKRVILEDTDSAG 99 >gi|317406202|gb|EFV86451.1| basal-body rod modification protein FlgD [Achromobacter xylosoxidans C54] Length = 231 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ--- 81 QD FLKLL+TQ+K+QDP PM+ +E +QLA S +E + +T+ + +++Q Sbjct: 30 QDQFLKLLVTQLKNQDPLNPMQNAELTSQLAQISTVEGITNLKNTMLAISGQIDVSQSMN 89 Query: 82 ASSYIGKNI 90 A + IGK + Sbjct: 90 AVAMIGKGV 98 >gi|294635609|ref|ZP_06714086.1| flagellar basal-body rod modification protein FlgD [Edwardsiella tarda ATCC 23685] gi|291091061|gb|EFE23622.1| flagellar basal-body rod modification protein FlgD [Edwardsiella tarda ATCC 23685] Length = 232 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q+ FL LL+ Q+++QDPT P++ +E QLA S + ++N+TL + + SN Q Sbjct: 34 QNNFLTLLVAQLRNQDPTNPLQNNELTTQLAQISTVSGIEKLNTTLGSISGQINSNQSLQ 93 Query: 82 ASSYIGKNI 90 ASS IG + Sbjct: 94 ASSLIGHGV 102 >gi|170751442|ref|YP_001757702.1| flagellar hook capping protein [Methylobacterium radiotolerans JCM 2831] gi|170657964|gb|ACB27019.1| flagellar hook capping protein [Methylobacterium radiotolerans JCM 2831] Length = 228 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/74 (43%), Positives = 48/74 (64%), Gaps = 4/74 (5%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNLAQASS 84 FL LL TQ+K+Q+P +PM ++ QL F+ +EQ ++ N L +L +S + A A+S Sbjct: 35 FLTLLTTQLKNQNPLDPMDTNQFTQQLVQFAGVEQQLKTNDRLDSILSASQSASSASATS 94 Query: 85 YIGKNITNADGSIS 98 YIGK ++ ADGS S Sbjct: 95 YIGKTVS-ADGSAS 107 >gi|4378859|gb|AAD19727.1| basal-body rod modification protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 230 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 10/84 (11%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST---LQELLKSNNLAQASS 84 FL LL TQ+K+QDP P+ ++ A +A FS + Q+N+T +Q + ++ L S+ Sbjct: 42 FLTLLTTQLKYQDPDSPVDNTQMAAPMAQFSSVAGINQLNTTVSSIQSDVSNSRLGNVSN 101 Query: 85 YIGK------NI-TNADGSISGVV 101 +IGK NI T+ DG+ +G V Sbjct: 102 WIGKAGLVSSNIATSIDGTFAGQV 125 >gi|145298490|ref|YP_001141331.1| flagellar hook capping protein FlgD [Aeromonas salmonicida subsp. salmonicida A449] gi|142851262|gb|ABO89583.1| flagellar hook capping protein FlgD [Aeromonas salmonicida subsp. salmonicida A449] Length = 242 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/94 (37%), Positives = 54/94 (57%), Gaps = 13/94 (13%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ----SVQMNSTLQELLK 75 KK L Q +FLKLL Q+ +QDP +P+ ++ ++Q+ S E S QM + L L+ Sbjct: 25 KKELDQASFLKLLTMQLSYQDPFKPVDNAQMLSQMTSMSTSEGINSLSTQMGN-LNTLMT 83 Query: 76 SNNLAQASSYIGKNI---TNA-----DGSISGVV 101 S+ QAS+ +G+N+ +N +GSI GVV Sbjct: 84 SSQALQASALVGQNVLLQSNVGFLENEGSIGGVV 117 >gi|226314864|ref|YP_002774760.1| hypothetical protein BBR47_52790 [Brevibacillus brevis NBRC 100599] gi|226097814|dbj|BAH46256.1| hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 310 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 7/75 (9%) Query: 8 NPTQQEFSKSKSKKT----LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 NP Q K KK L Q+AF+KL++ Q+KHQDP PM S+ + Q ++ + +E+ Sbjct: 11 NPYIQPHMSYKGKKEFSTELDQNAFMKLMLEQLKHQDPMSPMDNSQFIQQTSMLTMVEKI 70 Query: 64 VQMNSTLQELLKSNN 78 +M +TL E +SNN Sbjct: 71 TKM-TTLME--QSNN 82 >gi|300311351|ref|YP_003775443.1| flagellar basal-body rod modification protein [Herbaspirillum seropedicae SmR1] gi|300074136|gb|ADJ63535.1| flagellar basal-body rod modification protein [Herbaspirillum seropedicae SmR1] Length = 240 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA-- 82 Q+ FL LL+ Q+K+QDP PM S+ +Q+A S + Q+NSTL L+ + N +QA Sbjct: 36 QNRFLTLLMAQMKNQDPNNPMDNSQLTSQMAQLSTVSGISQLNSTLATLMGNLNSSQALS 95 Query: 83 -SSYIGKNI 90 ++ IG ++ Sbjct: 96 SANMIGHSV 104 >gi|183598616|ref|ZP_02960109.1| hypothetical protein PROSTU_02016 [Providencia stuartii ATCC 25827] gi|188020795|gb|EDU58835.1| hypothetical protein PROSTU_02016 [Providencia stuartii ATCC 25827] Length = 279 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 3/78 (3%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASE---QVAQLAVFSQMEQSVQMNSTLQE 72 K+KS+ +D FLK+++TQ+++QDPT+PM+ +E Q+AQ+A M + S + Sbjct: 28 KNKSQTDDMRDTFLKMIVTQMQNQDPTKPMENAELTSQLAQIATLESMNKLSDKVSGISS 87 Query: 73 LLKSNNLAQASSYIGKNI 90 + S QA+ +GK + Sbjct: 88 QIGSGQSLQATQLVGKGV 105 >gi|226327747|ref|ZP_03803265.1| hypothetical protein PROPEN_01620 [Proteus penneri ATCC 35198] gi|225203451|gb|EEG85805.1| hypothetical protein PROPEN_01620 [Proteus penneri ATCC 35198] Length = 270 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 5/85 (5%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 P+ KS S+ G FL LLITQ+K+QDPT PM+ +E +QLA S +E +N Sbjct: 14 PSSYHTKKSGSEDIKGN--FLTLLITQMKNQDPTNPMQNNELTSQLAQISTVEGIETLNK 71 Query: 69 TLQELLKSNNLAQ---ASSYIGKNI 90 T+ ++ + +Q ASS +G + Sbjct: 72 TVNNIVGQIDQSQALRASSLVGHGV 96 >gi|51246515|ref|YP_066399.1| basal-body rod modification protein FlgD [Desulfotalea psychrophila LSv54] gi|50877552|emb|CAG37392.1| related to basal-body rod modification protein (FlgD) [Desulfotalea psychrophila LSv54] Length = 248 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 5/78 (6%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL-- 74 S T+G+ FL LL+ Q+++QDP P + +E AQLA FS +EQ + +N + ++ Sbjct: 26 SGKNSTMGKQEFLTLLVAQLQNQDPLNPDEGTEFTAQLAQFSSLEQLMSINKGMGNMITS 85 Query: 75 --KSNNLAQASSYIGKNI 90 S+N+A ++ IGK + Sbjct: 86 TSNSDNIALLNT-IGKEV 102 >gi|117619792|ref|YP_857344.1| flagellar hook capping protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561199|gb|ABK38147.1| flagellar hook capping protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 242 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 11/93 (11%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKS 76 KK L Q++FLKLL Q+ +QDP +P+ ++ ++Q+ S + ++ +L L+ S Sbjct: 26 KKELDQESFLKLLTMQLSYQDPFKPVDNAQMLSQMTSMSTSQGISSLSNQIGSLNSLMTS 85 Query: 77 NNLAQASSYIGKNI--------TNADGSISGVV 101 + QAS+ +G+N+ DGS+ GVV Sbjct: 86 SQALQASALVGQNVLLQSNVGYLEKDGSLPGVV 118 >gi|293605002|ref|ZP_06687398.1| flagellar hook assembly protein FlgD [Achromobacter piechaudii ATCC 43553] gi|292816607|gb|EFF75692.1| flagellar hook assembly protein FlgD [Achromobacter piechaudii ATCC 43553] Length = 232 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ--- 81 QD FLKLL TQ+++QDP PM+ +E +QLA + +E + ST+Q + +++Q Sbjct: 30 QDQFLKLLTTQLQNQDPLNPMQNAELTSQLAQIATVEGISNLKSTIQAISGQIDVSQSMN 89 Query: 82 ASSYIGKNI 90 A S IGK + Sbjct: 90 AVSMIGKGV 98 >gi|317492429|ref|ZP_07950858.1| flagellar hook capping protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919768|gb|EFV41098.1| flagellar hook capping protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 233 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 43/68 (63%), Gaps = 3/68 (4%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQA 82 ++FL LL+ Q+K+QDPT P++ +E +QLA + + ++N+TL + + SN QA Sbjct: 36 NSFLTLLVAQLKNQDPTNPLQNNELTSQLAQINTVSGIEKLNTTLGSISGQINSNQSLQA 95 Query: 83 SSYIGKNI 90 SS IG + Sbjct: 96 SSLIGHGV 103 >gi|91224200|ref|ZP_01259463.1| flagellar basal-body rod modification protein D [Vibrio alginolyticus 12G01] gi|91191111|gb|EAS77377.1| flagellar basal-body rod modification protein D [Vibrio alginolyticus 12G01] Length = 227 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 4/74 (5%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE---LLKSNNLAQ 81 ++ F+ L++ QI++QDP P+ +E V QLA FSQ++ + M+ T+Q+ LL + + Sbjct: 39 ENEFISLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVQSTENMSKTMQQSMVLLDNMQVLS 98 Query: 82 ASSYIGKNI-TNAD 94 + +G+ + NAD Sbjct: 99 TAGLVGQTVYVNAD 112 >gi|269965643|ref|ZP_06179756.1| Flagellar basal-body rod modification protein flgD [Vibrio alginolyticus 40B] gi|269829711|gb|EEZ83947.1| Flagellar basal-body rod modification protein flgD [Vibrio alginolyticus 40B] Length = 227 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 4/74 (5%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE---LLKSNNLAQ 81 ++ F+ L++ QI++QDP P+ +E V QLA FSQ++ + M+ T+Q+ LL + + Sbjct: 39 ENEFISLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVQSTENMSKTMQQSMVLLDNMQVLS 98 Query: 82 ASSYIGKNI-TNAD 94 + +G+ + NAD Sbjct: 99 TAGLVGQTVYVNAD 112 >gi|253990128|ref|YP_003041484.1| flagellar basal body rod modification protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211639035|emb|CAR67649.1| basal-body rod modification protein flgd (flagellar protein for th initiation of hook assembly) [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781578|emb|CAQ84741.1| basal-body rod modification protein flgd (flagellar protein for th initiation of hook assembly) [Photorhabdus asymbiotica] Length = 232 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 14/85 (16%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQASS 84 F++LLI Q+K+QDPT PM+ +E A LA + +E ++N+T+ + + +N Q S+ Sbjct: 37 FMQLLIAQVKNQDPTNPMQNNELTAHLAQINMLEGIEKLNTTVGSIVGQINNNQSLQVSA 96 Query: 85 YIGKNI----------TN-ADGSIS 98 IG+ + TN DGSIS Sbjct: 97 LIGRGVMIPGDTILVGTNEKDGSIS 121 >gi|300114800|ref|YP_003761375.1| flagellar hook capping protein [Nitrosococcus watsonii C-113] gi|299540737|gb|ADJ29054.1| flagellar hook capping protein [Nitrosococcus watsonii C-113] Length = 226 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 11/90 (12%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNL 79 LG + FLKL+ Q+ +QDP +PM S ++Q+A F ++ + ++ +E+ L+SN Sbjct: 30 LGLEQFLKLMTAQLNNQDPFKPMDNSTFLSQVAQFGTVKGIQDLQTSFKEVSGSLQSNQA 89 Query: 80 AQASSYIGKNI--------TNADGSISGVV 101 QAS +G+++ A GSI G V Sbjct: 90 LQASGLVGRSVLVPSAEGSLEAGGSIRGAV 119 >gi|311992299|gb|ADQ26723.1| hook capping protein [Aeromonas hydrophila] Length = 241 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 11/93 (11%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKS 76 KK L Q++FLKLL Q+ +QDP +P+ ++ ++Q+ S + ++ +L L+ S Sbjct: 25 KKELDQESFLKLLTMQLSYQDPFKPVDNAQMLSQMTSMSTSQGISSLSNQIGSLNSLMTS 84 Query: 77 NNLAQASSYIGKNI--------TNADGSISGVV 101 + QAS+ +G+N+ DGS+ GVV Sbjct: 85 SQALQASALVGQNVLLQSNVGYLEKDGSLQGVV 117 >gi|307719962|ref|YP_003891102.1| flagellar hook capping protein [Sulfurimonas autotrophica DSM 16294] gi|306978055|gb|ADN08090.1| flagellar hook capping protein [Sulfurimonas autotrophica DSM 16294] Length = 220 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 40/67 (59%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79 K LG+D F+KLL+ Q+++QDPTEPM + + Q + + +E + + L++L S Sbjct: 24 KGVLGKDDFMKLLLVQLQYQDPTEPMDTEKILTQTSQLASLESADNTKTALEKLAASLGN 83 Query: 80 AQASSYI 86 AQ S I Sbjct: 84 AQQFSTI 90 >gi|206603147|gb|EDZ39627.1| Probable flagellar hook capping protein FlgD [Leptospirillum sp. Group II '5-way CG'] Length = 276 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 28/99 (28%), Positives = 52/99 (52%), Gaps = 10/99 (10%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN-- 77 ++ LG FL L+I+Q+++QDP P+ + AQLA FSQ++Q +N + + Sbjct: 30 RQKLGMGDFLHLMISQLQYQDPLHPLNNTRFAAQLAQFSQLDQLTHLNRGVGTIAHDGAD 89 Query: 78 -NLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAIT 115 N ++G+ +T + G NA ++ +G ++T Sbjct: 90 ANKMMMVGFLGQRVT-----MKG--NAFRLDPSGNVSLT 121 >gi|149908760|ref|ZP_01897421.1| LfgD [Moritella sp. PE36] gi|149808302|gb|EDM68241.1| LfgD [Moritella sp. PE36] Length = 218 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 52/87 (59%), Gaps = 6/87 (6%) Query: 8 NPTQQEFSKSKSKKTLG-QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66 NP Q S+ + LG ++ FL++++ QIK+QDP +P+ +E V+QLA FS +E + Sbjct: 11 NPAQT--SEVTANSALGLKNEFLQMMVAQIKNQDPLDPLDGTEYVSQLAQFSMVEGVEGL 68 Query: 67 N---STLQELLKSNNLAQASSYIGKNI 90 S+ E+L + + Q+++ IG + Sbjct: 69 RAGQSSQAEMLYTQQVLQSTALIGTTV 95 >gi|239995126|ref|ZP_04715650.1| flagellar basal body rod modification protein [Alteromonas macleodii ATCC 27126] gi|332140545|ref|YP_004426283.1| flagellar basal body rod modification protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327550567|gb|AEA97285.1| flagellar basal body rod modification protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 228 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 12/95 (12%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LK 75 +++ L Q+ F +L Q+ +QDPT P+ + VAQ+ F+ + Q+N + + Sbjct: 26 TEQQLTQEDFFSMLTEQLANQDPTAPVDNDQMVAQMTSFTMADGISQLNEKFESFAASMT 85 Query: 76 SNNLAQASSYIGKNI---------TNADGSISGVV 101 SN QASS IG+N+ N ISGV+ Sbjct: 86 SNQALQASSLIGQNVLVQGNVGYMANEGDGISGVI 120 >gi|261821152|ref|YP_003259258.1| flagellar basal body rod modification protein [Pectobacterium wasabiae WPP163] gi|261605165|gb|ACX87651.1| flagellar hook capping protein [Pectobacterium wasabiae WPP163] Length = 224 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 44/69 (63%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q+ FL LL+ Q+K+QDPT PM + V+QLA + + ++N+TL + + +N Q Sbjct: 32 QNQFLTLLVAQLKNQDPTNPMSNDQLVSQLAQLNTVSGIEKLNTTLGSISGQINNNQSMQ 91 Query: 82 ASSYIGKNI 90 A++ IG+++ Sbjct: 92 ATTLIGRSV 100 >gi|152979993|ref|YP_001353110.1| flagellar basal body rod modification protein [Janthinobacterium sp. Marseille] gi|151280070|gb|ABR88480.1| FlgD flagellar hook capping protein [Janthinobacterium sp. Marseille] Length = 225 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 3/76 (3%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL--- 74 KS QD FLKLL+TQ+++QDP P+ ++ +QLA S + ++N TL+ L+ Sbjct: 27 KSTAEEAQDRFLKLLVTQMQNQDPLNPLDNAQVTSQLAQLSTVTGIDKLNGTLESLMGNY 86 Query: 75 KSNNLAQASSYIGKNI 90 +S L QAS+ I + Sbjct: 87 QSAQLLQASNMIDHGV 102 >gi|188534171|ref|YP_001907968.1| flagellar basal body rod modification protein [Erwinia tasmaniensis Et1/99] gi|188029213|emb|CAO97085.1| Flagellar biosynthesis, initiation of hook assembly [Erwinia tasmaniensis Et1/99] Length = 223 Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q FL LL+TQ+K+QDPT PM S+ QLA + + ++N+TL + + S Q Sbjct: 31 QGNFLTLLVTQLKNQDPTNPMDNSQLTTQLAQINTLSGVEKLNTTLGSISGQITSGQSLQ 90 Query: 82 ASSYIGKNI 90 AS+ IG + Sbjct: 91 ASTLIGHGV 99 >gi|28211325|ref|NP_782269.1| putative basal-body rod modification protein flgD [Clostridium tetani E88] gi|28203765|gb|AAO36206.1| putative basal-body rod modification protein flgD [Clostridium tetani E88] Length = 174 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 16/87 (18%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82 L ++AFL++L ++ HQDP +E V Q+A F+ +EQ +N+T++ A A Sbjct: 32 LDKNAFLRILAAELSHQDPLSAKDGTEFVTQMAQFTSIEQMSNLNNTMR-------FAGA 84 Query: 83 SSYIGKN--ITNAD-------GSISGV 100 +S IGK + N D G I+GV Sbjct: 85 TSLIGKYAMVNNTDTYGNLYHGVITGV 111 >gi|73539449|ref|YP_299816.1| flagellar basal body rod modification protein [Ralstonia eutropha JMP134] gi|72122786|gb|AAZ64972.1| Flagellar hook capping protein [Ralstonia eutropha JMP134] Length = 226 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 4/79 (5%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74 S S S L Q FLK+L+TQ+ +QDP PM ++ +QLA S + MNSTL +LL Sbjct: 25 SGSASAADL-QSNFLKMLVTQMNNQDPLNPMDNAQLTSQLAQISTVSSMQTMNSTLTQLL 83 Query: 75 KSNNLAQA---SSYIGKNI 90 + ++A ++ IG+ + Sbjct: 84 NQTSASRAMDSAALIGRTV 102 >gi|288940408|ref|YP_003442648.1| flagellar hook capping protein [Allochromatium vinosum DSM 180] gi|288895780|gb|ADC61616.1| flagellar hook capping protein [Allochromatium vinosum DSM 180] Length = 236 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 46/79 (58%), Gaps = 3/79 (3%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74 S LGQ FLKL+ITQ+ +QDPT P++ + +Q+A FS + ++ S+ + L Sbjct: 32 STGSGNNALGQSDFLKLMITQLTNQDPTNPVENEDFASQMAQFSTLTGIEELTSSFETLS 91 Query: 75 KS---NNLAQASSYIGKNI 90 K+ +A++ +G+++ Sbjct: 92 KTLLQGQTVEAATLVGQSV 110 >gi|196033351|ref|ZP_03100763.1| flagellar hook capping protein [Bacillus cereus W] gi|195993785|gb|EDX57741.1| flagellar hook capping protein [Bacillus cereus W] Length = 190 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 6/123 (4%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST---LQ 71 S K+ + +D FLKL + KHQDP M ++ + Q A S MEQ M LQ Sbjct: 43 STQKTPGIMDKDDFLKLFLASFKHQDPFNAMDMNQMMNQTAQLSLMEQVNNMTKAVDKLQ 102 Query: 72 ELLKSNNLAQASSYIGK---NITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128 + S L ++GK ++N ++G V ++++ + VDN + + R Sbjct: 103 STMYSTALDGGMKFLGKYVRGVSNNGKQVTGQVETVRLAENNDVQLIVDNQVVSLRFIER 162 Query: 129 ISN 131 +S+ Sbjct: 163 VSD 165 >gi|84514834|ref|ZP_01002197.1| Flagellar scaffolding protein FlgD [Loktanella vestfoldensis SKA53] gi|84510993|gb|EAQ07447.1| Flagellar scaffolding protein FlgD [Loktanella vestfoldensis SKA53] Length = 233 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 11/93 (11%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKS 76 K+ LGQ FLKL+ Q+++QDP PM + +AQ+A FS + +M+ T+ + + Sbjct: 31 KEELGQTDFLKLMTAQLQNQDPFAPMDNGDFIAQMAQFSSVAGISKMSETMSGIADQMGQ 90 Query: 77 NNLAQASSYIGK------NITNAD--GSISGVV 101 +A + +Y+G N+ AD G I G + Sbjct: 91 FRVASSVNYLGHSVMIPGNLARADDNGEIHGAI 123 >gi|290474971|ref|YP_003467855.1| flagellar initiation of hook assembly [Xenorhabdus bovienii SS-2004] gi|289174288|emb|CBJ81078.1| flagellar biosynthesis; initiation of hook assembly [Xenorhabdus bovienii SS-2004] Length = 231 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 36/106 (33%), Positives = 53/106 (50%), Gaps = 7/106 (6%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 +D FL LL+ Q+K+QDPT PM+ +E QLA S ++ ++N TL + ++ N Q Sbjct: 34 KDNFLNLLVAQLKNQDPTNPMQNNELTTQLAQISTVQGVEKLNKTLGAVVGQMEGNQAMQ 93 Query: 82 ASSYIGKNITNADGSI---SGVVNAIQVSSTGLTAIT-VDNTEIPI 123 + IG+ + I SG N I S G DN +I I Sbjct: 94 TTMLIGRTVMIPGDKILVGSGEENGISTSPFGFELTRPADNIKITI 139 >gi|50120638|ref|YP_049805.1| flagellar basal body rod modification protein [Pectobacterium atrosepticum SCRI1043] gi|49611164|emb|CAG74610.1| basal-body rod modification protein [Pectobacterium atrosepticum SCRI1043] Length = 224 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q+ FL LL+ Q+K+QDPT PM + V+QLA + + ++N+TL + + +N Q Sbjct: 32 QNQFLTLLVAQLKNQDPTNPMSNDQLVSQLAQLNTVSGIEKLNTTLGSISGQINNNQSMQ 91 Query: 82 ASSYIGKNI 90 AS+ IG ++ Sbjct: 92 ASTLIGHSV 100 >gi|109947807|ref|YP_665035.1| flagellar basal body rod modification protein [Helicobacter acinonychis str. Sheeba] gi|109715028|emb|CAK00036.1| flagellar hook assembly protein [Helicobacter acinonychis str. Sheeba] Length = 292 Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 38/58 (65%), Gaps = 3/58 (5%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77 L +DAF+KL + Q+K+QDPT PM+ + + Q A +Q+E + T+QE+ +KSN Sbjct: 28 LDKDAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEVASAMKSN 85 >gi|218704483|ref|YP_002412002.1| flagellar basal body rod modification protein [Escherichia coli UMN026] gi|293404359|ref|ZP_06648353.1| basal-body rod modification protein flgD [Escherichia coli FVEC1412] gi|298380139|ref|ZP_06989744.1| basal-body rod modification protein flgD [Escherichia coli FVEC1302] gi|300899594|ref|ZP_07117833.1| flagellar hook capping protein [Escherichia coli MS 198-1] gi|331672595|ref|ZP_08373384.1| basal-body rod modification protein FlgD [Escherichia coli TA280] gi|331682577|ref|ZP_08383196.1| basal-body rod modification protein FlgD [Escherichia coli H299] gi|218431580|emb|CAR12459.1| flagellar hook assembly protein [Escherichia coli UMN026] gi|291428945|gb|EFF01970.1| basal-body rod modification protein flgD [Escherichia coli FVEC1412] gi|298279837|gb|EFI21345.1| basal-body rod modification protein flgD [Escherichia coli FVEC1302] gi|300356865|gb|EFJ72735.1| flagellar hook capping protein [Escherichia coli MS 198-1] gi|331070238|gb|EGI41604.1| basal-body rod modification protein FlgD [Escherichia coli TA280] gi|331080208|gb|EGI51387.1| basal-body rod modification protein FlgD [Escherichia coli H299] Length = 231 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNI 90 AS+ IG + Sbjct: 92 ASNLIGHGV 100 >gi|331646333|ref|ZP_08347436.1| basal-body rod modification protein FlgD [Escherichia coli M605] gi|330910889|gb|EGH39399.1| flagellar basal-body rod modification protein FlgD [Escherichia coli AA86] gi|331045085|gb|EGI17212.1| basal-body rod modification protein FlgD [Escherichia coli M605] Length = 231 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNI 90 AS+ IG + Sbjct: 92 ASNLIGHGV 100 >gi|285018210|ref|YP_003375921.1| flagellar hook capping protein flgd [Xanthomonas albilineans GPE PC73] gi|283473428|emb|CBA15933.1| probable flagellar hook capping protein flgd [Xanthomonas albilineans] Length = 226 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 32/107 (29%), Positives = 58/107 (54%), Gaps = 14/107 (13%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNL 79 L Q FLKL+ Q++HQDP +PM S+ V+Q+A S ++ +N T+ L + ++ + Sbjct: 32 LKQADFLKLMTEQLQHQDPLKPMDNSQMVSQMAQLSTVQGIGDLNKTVTALSASMSTDQV 91 Query: 80 AQASSYIGKNI--------TNADGSISGVVNAIQVSSTGLTAITVDN 118 + ++ IG + +DG+ G+V A +S G+ +TV + Sbjct: 92 LRGANLIGHKVLVPSASLPLGSDGAAGGMVAA---TSAGVVNLTVSD 135 >gi|168790010|ref|ZP_02815017.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC869] gi|261227020|ref|ZP_05941301.1| flagellar basal body rod modification protein [Escherichia coli O157:H7 str. FRIK2000] gi|261256254|ref|ZP_05948787.1| flagellar basal body rod modification protein [Escherichia coli O157:H7 str. FRIK966] gi|189370461|gb|EDU88877.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC869] Length = 231 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNI 90 AS+ IG + Sbjct: 92 ASNLIGHGV 100 >gi|170682037|ref|YP_001744105.1| flagellar basal body rod modification protein [Escherichia coli SMS-3-5] gi|170519755|gb|ACB17933.1| flagellar hook capping protein FlgD [Escherichia coli SMS-3-5] Length = 231 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNI 90 AS+ IG + Sbjct: 92 ASNLIGHGV 100 >gi|218700422|ref|YP_002408051.1| flagellar basal body rod modification protein [Escherichia coli IAI39] gi|300938640|ref|ZP_07153369.1| flagellar hook capping protein [Escherichia coli MS 21-1] gi|218370408|emb|CAR18215.1| flagellar hook assembly protein [Escherichia coli IAI39] gi|300456425|gb|EFK19918.1| flagellar hook capping protein [Escherichia coli MS 21-1] Length = 231 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNI 90 AS+ IG + Sbjct: 92 ASNLIGHGV 100 >gi|82777310|ref|YP_403659.1| flagellar basal body rod modification protein [Shigella dysenteriae Sd197] gi|309788142|ref|ZP_07682748.1| basal-body rod modification protein flgD [Shigella dysenteriae 1617] gi|81241458|gb|ABB62168.1| initiation of hook assembly [Shigella dysenteriae Sd197] gi|308923994|gb|EFP69495.1| basal-body rod modification protein flgD [Shigella dysenteriae 1617] Length = 231 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNI 90 AS+ IG + Sbjct: 92 ASNLIGHGV 100 >gi|26247215|ref|NP_753255.1| flagellar basal body rod modification protein [Escherichia coli CFT073] gi|227886567|ref|ZP_04004372.1| flagellar basal body rod modification protein [Escherichia coli 83972] gi|300974379|ref|ZP_07172591.1| flagellar hook capping protein [Escherichia coli MS 45-1] gi|301051141|ref|ZP_07197971.1| flagellar hook capping protein [Escherichia coli MS 185-1] gi|26107616|gb|AAN79815.1|AE016759_89 Basal-body rod modification protein flgD [Escherichia coli CFT073] gi|227836771|gb|EEJ47237.1| flagellar basal body rod modification protein [Escherichia coli 83972] gi|300297162|gb|EFJ53547.1| flagellar hook capping protein [Escherichia coli MS 185-1] gi|300410622|gb|EFJ94160.1| flagellar hook capping protein [Escherichia coli MS 45-1] gi|307553077|gb|ADN45852.1| flagellar hook capping protein FlgD [Escherichia coli ABU 83972] gi|315291069|gb|EFU50432.1| flagellar hook capping protein [Escherichia coli MS 153-1] Length = 231 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNI 90 AS+ IG + Sbjct: 92 ASNLIGHGV 100 >gi|222032828|emb|CAP75567.1| Basal-body rod modification protein flgD [Escherichia coli LF82] gi|312945637|gb|ADR26464.1| flagellar basal body rod modification protein [Escherichia coli O83:H1 str. NRG 857C] Length = 231 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNI 90 AS+ IG + Sbjct: 92 ASNLIGHGV 100 >gi|188492655|ref|ZP_02999925.1| flagellar hook capping protein FlgD [Escherichia coli 53638] gi|188487854|gb|EDU62957.1| flagellar hook capping protein FlgD [Escherichia coli 53638] Length = 231 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNI 90 AS+ IG + Sbjct: 92 ASNLIGHGV 100 >gi|187732739|ref|YP_001880753.1| flagellar basal body rod modification protein [Shigella boydii CDC 3083-94] gi|187429731|gb|ACD09005.1| flagellar hook capping protein FlgD [Shigella boydii CDC 3083-94] gi|320173528|gb|EFW48724.1| Flagellar basal-body rod modification protein FlgD [Shigella dysenteriae CDC 74-1112] Length = 231 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNI 90 AS+ IG + Sbjct: 92 ASNLIGHGV 100 >gi|323947623|gb|EGB43627.1| flagellar hook capping protein [Escherichia coli H120] Length = 231 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNI 90 AS+ IG + Sbjct: 92 ASNLIGHGV 100 >gi|15830707|ref|NP_309480.1| flagellar basal body rod modification protein [Escherichia coli O157:H7 str. Sakai] gi|91210227|ref|YP_540213.1| flagellar basal body rod modification protein [Escherichia coli UTI89] gi|110641251|ref|YP_668981.1| flagellar basal body rod modification protein [Escherichia coli 536] gi|117623261|ref|YP_852174.1| flagellar basal body rod modification protein [Escherichia coli APEC O1] gi|157160602|ref|YP_001457920.1| flagellar basal body rod modification protein [Escherichia coli HS] gi|168747149|ref|ZP_02772171.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC4113] gi|168758632|ref|ZP_02783639.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC4401] gi|168764487|ref|ZP_02789494.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC4501] gi|168767734|ref|ZP_02792741.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC4486] gi|168773920|ref|ZP_02798927.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC4196] gi|168783605|ref|ZP_02808612.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC4076] gi|168802020|ref|ZP_02827027.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC508] gi|170020529|ref|YP_001725483.1| flagellar basal body rod modification protein [Escherichia coli ATCC 8739] gi|191172470|ref|ZP_03034011.1| flagellar hook capping protein FlgD [Escherichia coli F11] gi|195935465|ref|ZP_03080847.1| flagellar basal body rod modification protein [Escherichia coli O157:H7 str. EC4024] gi|208809154|ref|ZP_03251491.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC4206] gi|208815597|ref|ZP_03256776.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC4045] gi|208822404|ref|ZP_03262723.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC4042] gi|209396598|ref|YP_002269921.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC4115] gi|215486284|ref|YP_002328715.1| flagellar basal body rod modification protein [Escherichia coli O127:H6 str. E2348/69] gi|217328509|ref|ZP_03444591.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. TW14588] gi|218557957|ref|YP_002390870.1| flagellar basal body rod modification protein [Escherichia coli S88] gi|237706939|ref|ZP_04537420.1| flagellar hook protein FlgE [Escherichia sp. 3_2_53FAA] gi|254792457|ref|YP_003077294.1| flagellar basal body rod modification protein [Escherichia coli O157:H7 str. TW14359] gi|291282095|ref|YP_003498913.1| Flagellar hook protein FlgE [Escherichia coli O55:H7 str. CB9615] gi|300902466|ref|ZP_07120448.1| flagellar hook capping protein [Escherichia coli MS 84-1] gi|300982622|ref|ZP_07176206.1| flagellar hook capping protein [Escherichia coli MS 200-1] gi|301023262|ref|ZP_07187059.1| flagellar hook capping protein [Escherichia coli MS 69-1] gi|301304986|ref|ZP_07211088.1| flagellar hook capping protein [Escherichia coli MS 124-1] gi|307310147|ref|ZP_07589797.1| flagellar hook capping protein [Escherichia coli W] gi|312971212|ref|ZP_07785390.1| basal-body rod modification protein flgD [Escherichia coli 1827-70] gi|331657137|ref|ZP_08358099.1| basal-body rod modification protein FlgD [Escherichia coli TA206] gi|331662481|ref|ZP_08363404.1| basal-body rod modification protein FlgD [Escherichia coli TA143] gi|13360917|dbj|BAB34876.1| flagellar biosynthesis FlgD protein [Escherichia coli O157:H7 str. Sakai] gi|91071801|gb|ABE06682.1| flagellar hook formation protein FlgD [Escherichia coli UTI89] gi|110342843|gb|ABG69080.1| basal-body rod modification protein FlgD [Escherichia coli 536] gi|115512385|gb|ABJ00460.1| flagellar hook formation protein FlgD [Escherichia coli APEC O1] gi|157066282|gb|ABV05537.1| flagellar hook capping protein FlgD [Escherichia coli HS] gi|169755457|gb|ACA78156.1| flagellar hook capping protein [Escherichia coli ATCC 8739] gi|187770545|gb|EDU34389.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC4196] gi|188018077|gb|EDU56199.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC4113] gi|188999082|gb|EDU68068.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC4076] gi|189354575|gb|EDU72994.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC4401] gi|189363218|gb|EDU81637.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC4486] gi|189365529|gb|EDU83945.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC4501] gi|189375919|gb|EDU94335.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC508] gi|190907354|gb|EDV66952.1| flagellar hook capping protein FlgD [Escherichia coli F11] gi|208728955|gb|EDZ78556.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC4206] gi|208732245|gb|EDZ80933.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC4045] gi|208737889|gb|EDZ85572.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC4042] gi|209157998|gb|ACI35431.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC4115] gi|209773388|gb|ACI85006.1| flagellar biosynthesis FlgD protein [Escherichia coli] gi|209773390|gb|ACI85007.1| flagellar biosynthesis FlgD protein [Escherichia coli] gi|209773392|gb|ACI85008.1| flagellar biosynthesis FlgD protein [Escherichia coli] gi|209773394|gb|ACI85009.1| flagellar biosynthesis FlgD protein [Escherichia coli] gi|209773396|gb|ACI85010.1| flagellar biosynthesis FlgD protein [Escherichia coli] gi|215264356|emb|CAS08713.1| flagellar hook assembly protein [Escherichia coli O127:H6 str. E2348/69] gi|217318936|gb|EEC27362.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. TW14588] gi|218364726|emb|CAR02416.1| flagellar hook assembly protein [Escherichia coli S88] gi|226898149|gb|EEH84408.1| flagellar hook protein FlgE [Escherichia sp. 3_2_53FAA] gi|254591857|gb|ACT71218.1| flagellar hook assembly protein [Escherichia coli O157:H7 str. TW14359] gi|281178184|dbj|BAI54514.1| flagellar hook formation protein FlgD [Escherichia coli SE15] gi|284920898|emb|CBG33961.1| basal-body rod modification protein FlgD [Escherichia coli 042] gi|290761968|gb|ADD55929.1| Flagellar hook protein FlgE [Escherichia coli O55:H7 str. CB9615] gi|294491980|gb|ADE90736.1| Flagellar hook capping protein [Escherichia coli IHE3034] gi|300307087|gb|EFJ61607.1| flagellar hook capping protein [Escherichia coli MS 200-1] gi|300397107|gb|EFJ80645.1| flagellar hook capping protein [Escherichia coli MS 69-1] gi|300405498|gb|EFJ89036.1| flagellar hook capping protein [Escherichia coli MS 84-1] gi|300839704|gb|EFK67464.1| flagellar hook capping protein [Escherichia coli MS 124-1] gi|306909865|gb|EFN40359.1| flagellar hook capping protein [Escherichia coli W] gi|307627455|gb|ADN71759.1| flagellar basal body rod modification protein [Escherichia coli UM146] gi|310336414|gb|EFQ01600.1| basal-body rod modification protein flgD [Escherichia coli 1827-70] gi|315060353|gb|ADT74680.1| flagellar hook assembly protein [Escherichia coli W] gi|315253876|gb|EFU33844.1| flagellar hook capping protein [Escherichia coli MS 85-1] gi|315287370|gb|EFU46781.1| flagellar hook capping protein [Escherichia coli MS 110-3] gi|315296706|gb|EFU56001.1| flagellar hook capping protein [Escherichia coli MS 16-3] gi|320179225|gb|EFW54183.1| Flagellar basal-body rod modification protein FlgD [Shigella boydii ATCC 9905] gi|320189758|gb|EFW64414.1| Flagellar basal-body rod modification protein FlgD [Escherichia coli O157:H7 str. EC1212] gi|320196443|gb|EFW71066.1| Flagellar basal-body rod modification protein FlgD [Escherichia coli WV_060327] gi|320200971|gb|EFW75555.1| Flagellar basal-body rod modification protein FlgD [Escherichia coli EC4100B] gi|320637526|gb|EFX07326.1| flagellar basal body rod modification protein [Escherichia coli O157:H7 str. G5101] gi|320643087|gb|EFX12288.1| flagellar basal body rod modification protein [Escherichia coli O157:H- str. 493-89] gi|320648545|gb|EFX17200.1| flagellar basal body rod modification protein [Escherichia coli O157:H- str. H 2687] gi|320653859|gb|EFX21933.1| flagellar basal body rod modification protein [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320659339|gb|EFX26908.1| flagellar basal body rod modification protein [Escherichia coli O55:H7 str. USDA 5905] gi|320664474|gb|EFX31625.1| flagellar basal body rod modification protein [Escherichia coli O157:H7 str. LSU-61] gi|323174796|gb|EFZ60411.1| basal-body rod modification protein flgD [Escherichia coli LT-68] gi|323379086|gb|ADX51354.1| flagellar hook capping protein [Escherichia coli KO11] gi|323953239|gb|EGB49105.1| flagellar hook capping protein [Escherichia coli H252] gi|323957899|gb|EGB53611.1| flagellar hook capping protein [Escherichia coli H263] gi|324007915|gb|EGB77134.1| flagellar hook capping protein [Escherichia coli MS 57-2] gi|324013349|gb|EGB82568.1| flagellar hook capping protein [Escherichia coli MS 60-1] gi|326339297|gb|EGD63111.1| Flagellar basal-body rod modification protein FlgD [Escherichia coli O157:H7 str. 1125] gi|326344742|gb|EGD68490.1| Flagellar basal-body rod modification protein FlgD [Escherichia coli O157:H7 str. 1044] gi|331055385|gb|EGI27394.1| basal-body rod modification protein FlgD [Escherichia coli TA206] gi|331060903|gb|EGI32867.1| basal-body rod modification protein FlgD [Escherichia coli TA143] gi|332088751|gb|EGI93863.1| basal-body rod modification protein flgD [Shigella boydii 5216-82] Length = 231 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNI 90 AS+ IG + Sbjct: 92 ASNLIGHGV 100 >gi|218689028|ref|YP_002397240.1| flagellar basal body rod modification protein [Escherichia coli ED1a] gi|306814076|ref|ZP_07448249.1| flagellar basal body rod modification protein [Escherichia coli NC101] gi|218426592|emb|CAR07420.1| flagellar hook assembly protein [Escherichia coli ED1a] gi|305852713|gb|EFM53161.1| flagellar basal body rod modification protein [Escherichia coli NC101] Length = 231 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNI 90 AS+ IG + Sbjct: 92 ASNLIGHGV 100 >gi|193064562|ref|ZP_03045642.1| flagellar hook capping protein FlgD [Escherichia coli E22] gi|194428429|ref|ZP_03060969.1| flagellar hook capping protein FlgD [Escherichia coli B171] gi|260843315|ref|YP_003221093.1| flagellar hook assembly protein FlgD [Escherichia coli O103:H2 str. 12009] gi|192927814|gb|EDV82428.1| flagellar hook capping protein FlgD [Escherichia coli E22] gi|194413481|gb|EDX29763.1| flagellar hook capping protein FlgD [Escherichia coli B171] gi|257758462|dbj|BAI29959.1| flagellar hook assembly protein FlgD [Escherichia coli O103:H2 str. 12009] gi|323163757|gb|EFZ49576.1| basal-body rod modification protein flgD [Escherichia coli E128010] Length = 231 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNI 90 AS+ IG + Sbjct: 92 ASNLIGHGV 100 >gi|293409441|ref|ZP_06653017.1| basal-body rod modification protein flgD [Escherichia coli B354] gi|291469909|gb|EFF12393.1| basal-body rod modification protein flgD [Escherichia coli B354] Length = 231 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNI 90 AS+ IG + Sbjct: 92 ASNLIGHGV 100 >gi|194438126|ref|ZP_03070219.1| flagellar hook capping protein FlgD [Escherichia coli 101-1] gi|253773901|ref|YP_003036732.1| flagellar basal body rod modification protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161181|ref|YP_003044289.1| flagellar basal body rod modification protein [Escherichia coli B str. REL606] gi|300928373|ref|ZP_07143907.1| flagellar hook capping protein [Escherichia coli MS 187-1] gi|194423062|gb|EDX39056.1| flagellar hook capping protein FlgD [Escherichia coli 101-1] gi|242376879|emb|CAQ31596.1| flagellar biosynthesis, initiation of hook assembly [Escherichia coli BL21(DE3)] gi|253324945|gb|ACT29547.1| flagellar hook capping protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973082|gb|ACT38753.1| flagellar basal body rod modification protein D [Escherichia coli B str. REL606] gi|253977296|gb|ACT42966.1| flagellar basal body rod modification protein D [Escherichia coli BL21(DE3)] gi|300463631|gb|EFK27124.1| flagellar hook capping protein [Escherichia coli MS 187-1] gi|323962674|gb|EGB58252.1| flagellar hook capping protein [Escherichia coli H489] gi|323973336|gb|EGB68525.1| flagellar hook capping protein [Escherichia coli TA007] Length = 231 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNI 90 AS+ IG + Sbjct: 92 ASNLIGHGV 100 >gi|323967016|gb|EGB62442.1| flagellar hook capping protein [Escherichia coli M863] gi|323976552|gb|EGB71640.1| flagellar hook capping protein [Escherichia coli TW10509] gi|327253474|gb|EGE65112.1| basal-body rod modification protein flgD [Escherichia coli STEC_7v] Length = 231 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNI 90 AS+ IG + Sbjct: 92 ASNLIGHGV 100 >gi|157157345|ref|YP_001462309.1| flagellar basal body rod modification protein [Escherichia coli E24377A] gi|157079375|gb|ABV19083.1| flagellar hook capping protein FlgD [Escherichia coli E24377A] Length = 231 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNI 90 AS+ IG + Sbjct: 92 ASNLIGHGV 100 >gi|16129038|ref|NP_415593.1| flagellar hook assembly protein [Escherichia coli str. K-12 substr. MG1655] gi|89107921|ref|AP_001701.1| flagellar hook assembly protein [Escherichia coli str. K-12 substr. W3110] gi|110805092|ref|YP_688612.1| flagellar basal body rod modification protein [Shigella flexneri 5 str. 8401] gi|170080726|ref|YP_001730046.1| flagellar hook assembly protein [Escherichia coli str. K-12 substr. DH10B] gi|191168471|ref|ZP_03030259.1| flagellar hook capping protein FlgD [Escherichia coli B7A] gi|209918329|ref|YP_002292413.1| flagellar basal body rod modification protein [Escherichia coli SE11] gi|218553654|ref|YP_002386567.1| flagellar basal body rod modification protein [Escherichia coli IAI1] gi|218694609|ref|YP_002402276.1| flagellar basal body rod modification protein [Escherichia coli 55989] gi|238900329|ref|YP_002926125.1| flagellar hook assembly protein [Escherichia coli BW2952] gi|256018668|ref|ZP_05432533.1| flagellar basal body rod modification protein [Shigella sp. D9] gi|256023227|ref|ZP_05437092.1| flagellar basal body rod modification protein [Escherichia sp. 4_1_40B] gi|260854558|ref|YP_003228449.1| flagellar hook assembly protein FlgD [Escherichia coli O26:H11 str. 11368] gi|293433365|ref|ZP_06661793.1| basal-body rod modification protein flgD [Escherichia coli B088] gi|300816777|ref|ZP_07096997.1| flagellar hook capping protein [Escherichia coli MS 107-1] gi|300821144|ref|ZP_07101293.1| flagellar hook capping protein [Escherichia coli MS 119-7] gi|300922601|ref|ZP_07138701.1| flagellar hook capping protein [Escherichia coli MS 182-1] gi|300950170|ref|ZP_07164115.1| flagellar hook capping protein [Escherichia coli MS 116-1] gi|300954385|ref|ZP_07166839.1| flagellar hook capping protein [Escherichia coli MS 175-1] gi|301029710|ref|ZP_07192764.1| flagellar hook capping protein [Escherichia coli MS 196-1] gi|301328555|ref|ZP_07221616.1| flagellar hook capping protein [Escherichia coli MS 78-1] gi|301644987|ref|ZP_07244953.1| flagellar hook capping protein [Escherichia coli MS 146-1] gi|309798069|ref|ZP_07692444.1| flagellar hook capping protein [Escherichia coli MS 145-7] gi|331652128|ref|ZP_08353147.1| basal-body rod modification protein FlgD [Escherichia coli M718] gi|331667475|ref|ZP_08368339.1| basal-body rod modification protein FlgD [Escherichia coli TA271] gi|331676866|ref|ZP_08377562.1| basal-body rod modification protein FlgD [Escherichia coli H591] gi|332279737|ref|ZP_08392150.1| flagellar hook protein FlgE [Shigella sp. D9] gi|2494526|sp|P75936|FLGD_ECOLI RecName: Full=Basal-body rod modification protein flgD gi|1787315|gb|AAC74159.1| flagellar hook assembly protein [Escherichia coli str. K-12 substr. MG1655] gi|4062652|dbj|BAA35883.1| flagellar hook assembly protein [Escherichia coli str. K12 substr. W3110] gi|110614640|gb|ABF03307.1| basal-body rod modification protein FlgD [Shigella flexneri 5 str. 8401] gi|169888561|gb|ACB02268.1| flagellar hook assembly protein [Escherichia coli str. K-12 substr. DH10B] gi|190901490|gb|EDV61251.1| flagellar hook capping protein FlgD [Escherichia coli B7A] gi|209911588|dbj|BAG76662.1| flagellar hook formation protein FlgD [Escherichia coli SE11] gi|218351341|emb|CAU97047.1| flagellar hook assembly protein [Escherichia coli 55989] gi|218360422|emb|CAQ97974.1| flagellar hook assembly protein [Escherichia coli IAI1] gi|238861107|gb|ACR63105.1| flagellar hook assembly protein [Escherichia coli BW2952] gi|257753207|dbj|BAI24709.1| flagellar hook assembly protein FlgD [Escherichia coli O26:H11 str. 11368] gi|260449785|gb|ACX40207.1| flagellar hook capping protein [Escherichia coli DH1] gi|291324184|gb|EFE63606.1| basal-body rod modification protein flgD [Escherichia coli B088] gi|299877398|gb|EFI85609.1| flagellar hook capping protein [Escherichia coli MS 196-1] gi|300318621|gb|EFJ68405.1| flagellar hook capping protein [Escherichia coli MS 175-1] gi|300421078|gb|EFK04389.1| flagellar hook capping protein [Escherichia coli MS 182-1] gi|300450517|gb|EFK14137.1| flagellar hook capping protein [Escherichia coli MS 116-1] gi|300526443|gb|EFK47512.1| flagellar hook capping protein [Escherichia coli MS 119-7] gi|300530551|gb|EFK51613.1| flagellar hook capping protein [Escherichia coli MS 107-1] gi|300844947|gb|EFK72707.1| flagellar hook capping protein [Escherichia coli MS 78-1] gi|301076716|gb|EFK91522.1| flagellar hook capping protein [Escherichia coli MS 146-1] gi|308118352|gb|EFO55614.1| flagellar hook capping protein [Escherichia coli MS 145-7] gi|309701347|emb|CBJ00648.1| basal-body rod modification protein FlgD [Escherichia coli ETEC H10407] gi|315135707|dbj|BAJ42866.1| flagellar basal body rod modification protein [Escherichia coli DH1] gi|315618245|gb|EFU98835.1| basal-body rod modification protein flgD [Escherichia coli 3431] gi|323156882|gb|EFZ43016.1| basal-body rod modification protein flgD [Escherichia coli EPECa14] gi|323165583|gb|EFZ51370.1| basal-body rod modification protein flgD [Shigella sonnei 53G] gi|323185802|gb|EFZ71163.1| basal-body rod modification protein flgD [Escherichia coli 1357] gi|323937815|gb|EGB34079.1| flagellar hook capping protein [Escherichia coli E1520] gi|323942544|gb|EGB38711.1| flagellar hook capping protein [Escherichia coli E482] gi|324017421|gb|EGB86640.1| flagellar hook capping protein [Escherichia coli MS 117-3] gi|324117354|gb|EGC11261.1| flagellar hook capping protein [Escherichia coli E1167] gi|331050406|gb|EGI22464.1| basal-body rod modification protein FlgD [Escherichia coli M718] gi|331065060|gb|EGI36955.1| basal-body rod modification protein FlgD [Escherichia coli TA271] gi|331075555|gb|EGI46853.1| basal-body rod modification protein FlgD [Escherichia coli H591] gi|332102089|gb|EGJ05435.1| flagellar hook protein FlgE [Shigella sp. D9] gi|332342621|gb|AEE55955.1| flagellar basal-body rod modification protein FlgD [Escherichia coli UMNK88] gi|333008277|gb|EGK27751.1| basal-body rod modification protein flgD [Shigella flexneri K-272] gi|333019767|gb|EGK39039.1| basal-body rod modification protein flgD [Shigella flexneri K-227] Length = 231 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNI 90 AS+ IG + Sbjct: 92 ASNLIGHGV 100 >gi|292487938|ref|YP_003530813.1| basal-body rod modification protein FlgD [Erwinia amylovora CFBP1430] gi|292899157|ref|YP_003538526.1| flagellar hook formation protein FlgD [Erwinia amylovora ATCC 49946] gi|291199005|emb|CBJ46116.1| flagellar hook formation protein FlgD [Erwinia amylovora ATCC 49946] gi|291553360|emb|CBA20405.1| Basal-body rod modification protein flgD [Erwinia amylovora CFBP1430] Length = 223 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q+ FL LL+TQ+K+QDPT PM ++ QLA + + ++N+TL + + S Q Sbjct: 31 QNNFLTLLVTQLKNQDPTNPMDNAQLTTQLAQINTLSGVEKLNTTLGSISGQITSGQSLQ 90 Query: 82 ASSYIGKNI 90 AS+ IG + Sbjct: 91 ASTLIGHGV 99 >gi|323190587|gb|EFZ75859.1| basal-body rod modification protein flgD [Escherichia coli RN587/1] Length = 231 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNI 90 AS+ IG + Sbjct: 92 ASNLIGHGV 100 >gi|15801192|ref|NP_287209.1| flagellar basal body rod modification protein [Escherichia coli O157:H7 EDL933] gi|12514613|gb|AAG55821.1|AE005317_10 flagellar biosynthesis, initiation of hook assembly [Escherichia coli O157:H7 str. EDL933] Length = 231 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNI 90 AS+ IG + Sbjct: 92 ASNLIGHGV 100 >gi|194432371|ref|ZP_03064658.1| flagellar hook capping protein FlgD [Shigella dysenteriae 1012] gi|194419258|gb|EDX35340.1| flagellar hook capping protein FlgD [Shigella dysenteriae 1012] gi|332092821|gb|EGI97889.1| basal-body rod modification protein flgD [Shigella dysenteriae 155-74] Length = 231 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNI 90 AS+ IG + Sbjct: 92 ASNLIGHGV 100 >gi|30062612|ref|NP_836783.1| flagellar basal body rod modification protein [Shigella flexneri 2a str. 2457T] gi|30040858|gb|AAP16589.1| flagellar hook formation protein FlgD [Shigella flexneri 2a str. 2457T] gi|313650474|gb|EFS14881.1| basal-body rod modification protein flgD [Shigella flexneri 2a str. 2457T] gi|332758234|gb|EGJ88557.1| basal-body rod modification protein flgD [Shigella flexneri 4343-70] gi|332761420|gb|EGJ91704.1| basal-body rod modification protein flgD [Shigella flexneri K-671] gi|332767682|gb|EGJ97875.1| flagellar hook capping family protein [Shigella flexneri 2930-71] gi|333005536|gb|EGK25054.1| basal-body rod modification protein flgD [Shigella flexneri K-218] gi|333019309|gb|EGK38592.1| basal-body rod modification protein flgD [Shigella flexneri K-304] Length = 231 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNI 90 AS+ IG + Sbjct: 92 ASNLIGHGV 100 >gi|260867438|ref|YP_003233840.1| flagellar hook assembly protein FlgD [Escherichia coli O111:H- str. 11128] gi|257763794|dbj|BAI35289.1| flagellar hook assembly protein FlgD [Escherichia coli O111:H- str. 11128] gi|323175694|gb|EFZ61288.1| basal-body rod modification protein flgD [Escherichia coli 1180] Length = 231 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNI 90 AS+ IG + Sbjct: 92 ASNLIGHGV 100 >gi|74311637|ref|YP_310056.1| flagellar basal body rod modification protein [Shigella sonnei Ss046] gi|73855114|gb|AAZ87821.1| flagellar protein for initiation of hook assembly [Shigella sonnei Ss046] Length = 231 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNI 90 AS+ IG + Sbjct: 92 ASNLIGHGV 100 >gi|307137710|ref|ZP_07497066.1| flagellar basal body rod modification protein [Escherichia coli H736] gi|331641619|ref|ZP_08342754.1| basal-body rod modification protein FlgD [Escherichia coli H736] gi|331038417|gb|EGI10637.1| basal-body rod modification protein FlgD [Escherichia coli H736] Length = 231 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNI 90 AS+ IG + Sbjct: 92 ASNLIGHGV 100 >gi|146311245|ref|YP_001176319.1| flagellar basal body rod modification protein [Enterobacter sp. 638] gi|145318121|gb|ABP60268.1| flagellar hook capping protein [Enterobacter sp. 638] Length = 236 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E QLA S + ++N+TL + L + Q Sbjct: 36 QGSFLTLLVAQLKNQDPTNPMQNNELTTQLAQISTVSGIEKLNTTLGSVSGQLNDSQSLQ 95 Query: 82 ASSYIGKNI 90 AS+ IG + Sbjct: 96 ASNLIGHGV 104 >gi|109899403|ref|YP_662658.1| flagellar basal body rod modification protein [Pseudoalteromonas atlantica T6c] gi|109701684|gb|ABG41604.1| flagellar hook capping protein [Pseudoalteromonas atlantica T6c] Length = 228 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 37/113 (32%), Positives = 60/113 (53%), Gaps = 14/113 (12%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---L 74 +S + L Q+ F LL Q+ +QDP++P+ + VAQ+ F+ + Q+N + + Sbjct: 25 ESNQNLSQEDFFSLLTEQLANQDPSKPVDNDQMVAQMTSFTMADGISQLNEKFETFATSM 84 Query: 75 KSNNLAQASSYIGKNI--------TNADG-SISGVVNAIQVSSTGLTAITVDN 118 SN QASS IG+ + ++G +SGVV I S+T T IT++N Sbjct: 85 TSNQALQASSLIGQQVLLQGDVAHMASEGQGVSGVV--INDSTTLNTKITIEN 135 >gi|332759649|gb|EGJ89954.1| basal-body rod modification protein flgD [Shigella flexneri 2747-71] Length = 231 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNI 90 AS+ IG + Sbjct: 92 ASNLIGHGV 100 >gi|312172059|emb|CBX80316.1| Basal-body rod modification protein flgD [Erwinia amylovora ATCC BAA-2158] Length = 223 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q+ FL LL+TQ+K+QDPT PM ++ QLA + + ++N+TL + + S Q Sbjct: 31 QNNFLTLLVTQLKNQDPTNPMDNAQLTTQLAQINTLSGVEKLNTTLGSISGQITSGQSLQ 90 Query: 82 ASSYIGKNI 90 AS+ IG + Sbjct: 91 ASTLIGHGV 99 >gi|281600494|gb|ADA73478.1| Flagellar hook protein FlgE [Shigella flexneri 2002017] Length = 229 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNI 90 AS+ IG + Sbjct: 92 ASNLIGHGV 100 >gi|259908813|ref|YP_002649169.1| flagellar basal body rod modification protein [Erwinia pyrifoliae Ep1/96] gi|224964435|emb|CAX55944.1| Flagellar biosynthesis, initiation of hook assembly [Erwinia pyrifoliae Ep1/96] Length = 224 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q+ FL LL+TQ+K+QDPT PM ++ QLA + + ++N+TL + + S Q Sbjct: 32 QNNFLTLLVTQLKNQDPTNPMDNAQLTTQLAQINTLSGVERLNTTLGSISGQITSGQSLQ 91 Query: 82 ASSYIGKNI 90 AS+ IG + Sbjct: 92 ASTLIGHGV 100 >gi|126730148|ref|ZP_01745960.1| Possible FlgD protein [Sagittula stellata E-37] gi|126709528|gb|EBA08582.1| Possible FlgD protein [Sagittula stellata E-37] Length = 188 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 4/74 (5%) Query: 31 LLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQASSYIG 87 +L Q+++QDP P+ ++E QLA FS +EQ VQ N L+ + L N+L + +IG Sbjct: 1 MLTVQVQNQDPLNPVDSTEYATQLATFSSVEQQVQTNELLRNISATLGGNSLNEFGRWIG 60 Query: 88 -KNITNADGSISGV 100 + + A GV Sbjct: 61 MEGLVRAPAMFDGV 74 >gi|34498341|ref|NP_902556.1| basal-body rod modification protein FlgD [Chromobacterium violaceum ATCC 12472] gi|34104195|gb|AAQ60554.1| basal-body rod modification protein FlgD [Chromobacterium violaceum ATCC 12472] Length = 224 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ--- 81 Q+ FL LL Q+ QDP PM S+ +Q+A SQ+ +N T+Q+L+ S N +Q Sbjct: 29 QNNFLTLLTAQLNAQDPLNPMDNSQLTSQMAQISQVSGLQSLNLTMQQLVASQNASQSMM 88 Query: 82 ASSYIGKNI 90 A+ IG N+ Sbjct: 89 ATGMIGNNV 97 >gi|82702452|ref|YP_412018.1| flagellar basal body rod modification protein [Nitrosospira multiformis ATCC 25196] gi|82410517|gb|ABB74626.1| Flagellar hook capping protein [Nitrosospira multiformis ATCC 25196] Length = 222 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 9/91 (9%) Query: 9 PTQQEFSKSKSKKTLG------QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 PT F+ ++ T QD FLKLL+TQ+K+QDP P+ ++ QLA S + Sbjct: 9 PTSNPFAAYGTRSTAKPAEEDLQDRFLKLLVTQMKNQDPLNPLDNAQVTTQLAQISTVNG 68 Query: 63 SVQMNSTLQELLKSNNLA---QASSYIGKNI 90 ++N+T++ + S QA+ IG+ + Sbjct: 69 VERLNATIRTIADSFTAGQSLQAAGMIGREV 99 >gi|254516988|ref|ZP_05129046.1| flagellar hook capping protein [gamma proteobacterium NOR5-3] gi|219674493|gb|EED30861.1| flagellar hook capping protein [gamma proteobacterium NOR5-3] Length = 233 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 45/78 (57%), Gaps = 3/78 (3%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQE 72 K+ S + +G D FL L++ Q+++QDP++PM + + QLA F + ++N S L Sbjct: 21 KAGSVEDMGSDDFLTLMVAQLENQDPSKPMDNMQFMGQLAQFGTVSGIQELNAGFSGLSN 80 Query: 73 LLKSNNLAQASSYIGKNI 90 L QA++ +G+++ Sbjct: 81 ALSGGQALQAAALVGRSV 98 >gi|24051371|gb|AAN42702.1| flagellar hook protein FlgE [Shigella flexneri 2a str. 301] Length = 642 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNI 90 AS+ IG + Sbjct: 92 ASNLIGHGV 100 >gi|116626494|ref|YP_828650.1| flagellar hook capping protein [Candidatus Solibacter usitatus Ellin6076] gi|116229656|gb|ABJ88365.1| flagellar hook capping protein [Candidatus Solibacter usitatus Ellin6076] Length = 99 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 21/43 (48%), Positives = 29/43 (67%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67 +D FL+LL+ QIK+QDP P + + QLA F Q+EQS+ M Sbjct: 30 KDMFLQLLVAQIKNQDPLSPTDGVQFLTQLAQFQQLEQSINMG 72 >gi|283478795|emb|CAY74711.1| Basal-body rod modification protein flgD [Erwinia pyrifoliae DSM 12163] Length = 226 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q+ FL LL+TQ+K+QDPT PM ++ QLA + + ++N+TL + + S Q Sbjct: 34 QNNFLTLLVTQLKNQDPTNPMDNAQLTTQLAQINTLSGVERLNTTLGSISGQITSGQSLQ 93 Query: 82 ASSYIGKNI 90 AS+ IG + Sbjct: 94 ASTLIGHGV 102 >gi|300918677|ref|ZP_07135258.1| flagellar hook capping protein [Escherichia coli MS 115-1] gi|300414171|gb|EFJ97481.1| flagellar hook capping protein [Escherichia coli MS 115-1] Length = 231 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNI 90 AS+ IG + Sbjct: 92 ASNLIGYGV 100 >gi|332305614|ref|YP_004433465.1| flagellar hook capping protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172943|gb|AEE22197.1| flagellar hook capping protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 228 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 9/117 (7%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---L 74 S + L Q+ F LL Q+ +QDP++P+ + VAQ+ F+ + Q+N + + Sbjct: 25 DSNQNLSQEDFFSLLTEQLANQDPSKPVDNDQMVAQMTSFTMADGISQLNEKFETFATSM 84 Query: 75 KSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 SN QASS IG+ + + G V + G++ + +++T + T I I N Sbjct: 85 TSNQALQASSLIGQQVL-----LQGDVAHMASEGQGVSGVVINDTTT-LNTKITIEN 135 >gi|51596010|ref|YP_070201.1| flagellar basal body rod modification protein [Yersinia pseudotuberculosis IP 32953] gi|170024648|ref|YP_001721153.1| flagellar basal body rod modification protein [Yersinia pseudotuberculosis YPIII] gi|186895113|ref|YP_001872225.1| flagellar basal body rod modification protein [Yersinia pseudotuberculosis PB1/+] gi|51589292|emb|CAH20913.1| basal-body rod modification protein FlgD [Yersinia pseudotuberculosis IP 32953] gi|169751182|gb|ACA68700.1| flagellar hook capping protein [Yersinia pseudotuberculosis YPIII] gi|186698139|gb|ACC88768.1| flagellar hook capping protein [Yersinia pseudotuberculosis PB1/+] Length = 228 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q++FL LL+ Q+K+QDPT PM+ +E QLA + + ++N+TL + + S+ Sbjct: 32 QNSFLTLLVAQLKNQDPTNPMENNELTTQLAQINTVSGIEKLNTTLGAITGQIDSSQSLY 91 Query: 82 ASSYIGKNI 90 A+S IG+ + Sbjct: 92 ATSLIGRGV 100 >gi|257095360|ref|YP_003169001.1| flagellar hook capping protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047884|gb|ACV37072.1| flagellar hook capping protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 225 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 53/91 (58%), Gaps = 16/91 (17%) Query: 25 QDAFLKLLITQIKHQDPTEPMK---ASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA- 80 Q+ FLKLL+TQ+K+QDP P+ + Q++Q++ + +E ++N+TL+ LL + N Sbjct: 34 QNRFLKLLVTQLKNQDPLNPLDNAAVTSQISQISTVTGIE---KLNTTLETLLNTFNDGQ 90 Query: 81 --QASSYIGKNITNA-------DGSISGVVN 102 QA+ +GK++ A G SG VN Sbjct: 91 SMQAAGLLGKSVLVAGSQLALTGGRASGGVN 121 >gi|310767289|gb|ADP12239.1| flagellar basal body rod modification protein [Erwinia sp. Ejp617] Length = 224 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q+ FL LL+TQ+K+QDPT PM ++ QLA + + ++N+TL + + S Q Sbjct: 32 QNNFLTLLVTQLKNQDPTNPMDNAQLTTQLAQINTLSGVEKLNTTLGSISGQITSGQSLQ 91 Query: 82 ASSYIGKNI 90 AS+ IG + Sbjct: 92 ASTLIGHGV 100 >gi|258404709|ref|YP_003197451.1| flagellar hook capping protein [Desulfohalobium retbaense DSM 5692] gi|257796936|gb|ACV67873.1| flagellar hook capping protein [Desulfohalobium retbaense DSM 5692] Length = 227 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 46/72 (63%), Gaps = 3/72 (4%) Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--LKSNNL 79 +LG+ FL LL+TQ+++QDP P +E AQLA FS +EQ ++ +++ L +K+ Sbjct: 28 SLGKMDFLNLLVTQLENQDPMNPSDPTEMTAQLAQFSSLEQLTNISESMEGLDAMKTAYE 87 Query: 80 AQAS-SYIGKNI 90 A+ S +G+N+ Sbjct: 88 QNAALSMLGRNV 99 >gi|251778352|ref|ZP_04821272.1| flagellar hook assembly protein FlgD [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082667|gb|EES48557.1| flagellar hook assembly protein FlgD [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 321 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 4/95 (4%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 SKS + +++FLKLL Q+ + DPT ++ V Q+A F+ MEQ +N T+ Sbjct: 41 SKSGQEFDKNSFLKLLSAQLSNLDPTSDQDSTAYVTQMAQFAAMEQMYNLNDTMSTFAHQ 100 Query: 77 NNLAQASSYIGKNITNADGS-ISGVVNAIQVSSTG 110 + + ++ ++ NADG +G++ + + G Sbjct: 101 QLVGKGATM---DLINADGEYYTGIIRGVSKDNYG 132 >gi|197104254|ref|YP_002129631.1| flagellar hook assembly protein [Phenylobacterium zucineum HLK1] gi|196477674|gb|ACG77202.1| flagellar hook assembly protein [Phenylobacterium zucineum HLK1] Length = 230 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 2/70 (2%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK--SNNLAQAS 83 D FL LL TQ+K+QDP P+ +++ Q+ + +EQ + N L+ L+ SN ++ A Sbjct: 25 DTFLALLTTQLKNQDPLSPLDSNQFTQQIVQMTGVEQQLLTNDLLKSLVSNTSNGVSTAV 84 Query: 84 SYIGKNITNA 93 S IGK + A Sbjct: 85 SLIGKEVRAA 94 >gi|157738167|ref|YP_001490851.1| flagellar hook assembly protein FlgD [Arcobacter butzleri RM4018] gi|315636310|ref|ZP_07891560.1| flagellar hook assembly protein FlgD [Arcobacter butzleri JV22] gi|157700021|gb|ABV68181.1| flagellar hook assembly protein FlgD [Arcobacter butzleri RM4018] gi|315479399|gb|EFU70082.1| flagellar hook assembly protein FlgD [Arcobacter butzleri JV22] Length = 226 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 55/98 (56%), Gaps = 3/98 (3%) Query: 14 FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73 ++ S S +L + FLKL+I Q+K QDPT+P +++ + S + ++QM STL+ + Sbjct: 18 YTTSVSNDSLTTNDFLKLMIEQLKLQDPTKPYDSAKMLETQMQMSTLNANMQMISTLESI 77 Query: 74 ---LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSS 108 + +++ A+ IG +I N + SG + + V S Sbjct: 78 STAFQQTSISNAAGLIGSSIENGSKNSSGSLKSYYVES 115 >gi|188588066|ref|YP_001920208.1| flagellar hook assembly protein FlgD [Clostridium botulinum E3 str. Alaska E43] gi|188498347|gb|ACD51483.1| flagellar hook assembly protein FlgD [Clostridium botulinum E3 str. Alaska E43] Length = 321 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 4/95 (4%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 SKS + +++FLKLL Q+ + DPT ++ V Q+A F+ MEQ +N T+ Sbjct: 41 SKSGQEFDKNSFLKLLSAQLSNLDPTSDQDSTAYVTQMAQFAAMEQMYNLNDTMSTFAHQ 100 Query: 77 NNLAQASSYIGKNITNADGS-ISGVVNAIQVSSTG 110 + + ++ ++ NADG +G++ + + G Sbjct: 101 QLVGKGATM---DLINADGEYYTGIIRGVSKDNYG 132 >gi|311105934|ref|YP_003978787.1| basal-body rod modification protein FlgD [Achromobacter xylosoxidans A8] gi|310760623|gb|ADP16072.1| basal-body rod modification protein FlgD [Achromobacter xylosoxidans A8] Length = 232 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ--- 81 QD FLKLL+TQ+++QDP PM+ +E +QLA S +E + +T+ + +++Q Sbjct: 30 QDQFLKLLVTQLQNQDPLNPMQNAELTSQLAQISTVEGITNLKNTMLAISGQIDVSQSMN 89 Query: 82 ASSYIGKNI 90 A + IGK + Sbjct: 90 AVAMIGKGV 98 >gi|187934832|ref|YP_001885047.1| flagellar hook assembly protein FlgD [Clostridium botulinum B str. Eklund 17B] gi|187722985|gb|ACD24206.1| flagellar hook assembly protein FlgD [Clostridium botulinum B str. Eklund 17B] Length = 321 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 4/95 (4%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 SKS + +++FLKLL Q+ + DPT ++ V Q+A F+ MEQ +N T+ Sbjct: 41 SKSGQEFDKNSFLKLLSAQLSNLDPTSDQDSTAYVTQMAQFAAMEQMYNLNDTMSTFAHQ 100 Query: 77 NNLAQASSYIGKNITNADGS-ISGVVNAIQVSSTG 110 + + ++ ++ NADG +G++ + + G Sbjct: 101 QLVGKGATM---DLINADGEYYTGIIRGVSKDNYG 132 >gi|304397203|ref|ZP_07379082.1| flagellar hook capping protein [Pantoea sp. aB] gi|304355352|gb|EFM19720.1| flagellar hook capping protein [Pantoea sp. aB] Length = 224 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 51/94 (54%), Gaps = 6/94 (6%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDA---FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59 +N +++PT S + QD FL +L+TQ+K+QDPT PM S+ QLA + Sbjct: 7 VNDKLDPTVLSSSNTSGTGNNAQDLQNQFLTMLVTQLKNQDPTNPMDNSQLTTQLAQINT 66 Query: 60 MEQSVQMNSTLQEL---LKSNNLAQASSYIGKNI 90 + ++N+TL + + ++ Q+S+ IG + Sbjct: 67 LSGIEKLNTTLGSISGQINTSQSLQSSTLIGHGV 100 >gi|255323567|ref|ZP_05364697.1| flagellar hook assembly protein [Campylobacter showae RM3277] gi|255299281|gb|EET78568.1| flagellar hook assembly protein [Campylobacter showae RM3277] Length = 234 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 6/82 (7%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASE---QVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79 L +DAF+KLL+T++++QDPT PM + Q +QLA E + +M L + LK++ Sbjct: 36 LDKDAFMKLLLTELQYQDPTSPMDTEKMLTQTSQLASLEMQENTNKMMQKLADQLKNSTN 95 Query: 80 AQASSYIGKNITNADGSISGVV 101 A +GK D SG+V Sbjct: 96 MYAVGVLGKMAKIGD---SGIV 114 >gi|261339375|ref|ZP_05967233.1| basal-body rod modification protein FlgD [Enterobacter cancerogenus ATCC 35316] gi|288318176|gb|EFC57114.1| basal-body rod modification protein FlgD [Enterobacter cancerogenus ATCC 35316] Length = 236 Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E QLA S + ++N+TL + + S+ Q Sbjct: 36 QSSFLTLLVAQLKNQDPTNPMQNNELTTQLAQISTVSGIEKLNTTLGSVSGQIDSSQSLQ 95 Query: 82 ASSYIGKNI 90 A++ IG + Sbjct: 96 AANLIGHGV 104 >gi|85712253|ref|ZP_01043304.1| flagellar basal body rod modification protein [Idiomarina baltica OS145] gi|85693880|gb|EAQ31827.1| flagellar basal body rod modification protein [Idiomarina baltica OS145] Length = 227 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 3/81 (3%) Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72 E + ++ L Q+ F KLL Q+ QDPT+P+ + ++Q+ FS E Q++S + Sbjct: 22 EAADPSEQQKLEQEDFFKLLTEQLNMQDPTKPVDNDQMISQMTSFSMAEGISQLSSQFTQ 81 Query: 73 L---LKSNNLAQASSYIGKNI 90 + SN QAS+ +G+++ Sbjct: 82 FTQNMSSNQALQASTMVGRDV 102 >gi|148258442|ref|YP_001243027.1| putative flagellar basal-body rod modification protein FlgD [Bradyrhizobium sp. BTAi1] gi|146410615|gb|ABQ39121.1| putative flagellar basal-body rod modification protein FlgD [Bradyrhizobium sp. BTAi1] Length = 235 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 7/93 (7%) Query: 10 TQQEFSKSKSKKTLGQD---AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66 T++ S S +T D +FL LL TQ+ HQ+P +P+ ++ QL F+Q+EQ ++ Sbjct: 21 TEEPVKPSASARTGIADNFQSFLTLLTTQLNHQNPLDPLNVNQFTQQLVQFAQVEQQLKG 80 Query: 67 NSTLQELL---KSNNLAQASSYIGKNITNADGS 96 N+ L+ L+ KS QA +G+ DGS Sbjct: 81 NTLLERLVEAQKSTQSTQALMLVGRTAV-VDGS 112 >gi|167994040|ref|ZP_02575132.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205328048|gb|EDZ14812.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|332988067|gb|AEF07050.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 232 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 3/90 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 NT V T S + S Q +FL LL+ Q+K+QDPT P++ +E QLA S + Sbjct: 12 NTGVKTTTDSGSMTGSNAADLQSSFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGI 71 Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNI 90 ++N+TL + + ++ QA++ IG + Sbjct: 72 EKLNTTLGAISGQIDNSQSLQATTLIGHGV 101 >gi|311280018|ref|YP_003942249.1| flagellar hook capping protein [Enterobacter cloacae SCF1] gi|308749213|gb|ADO48965.1| flagellar hook capping protein [Enterobacter cloacae SCF1] Length = 230 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + + Q Sbjct: 33 QSSFLTLLVAQLKNQDPTNPMQNNELTSQLAQISTVSGIEKLNTTLGSISGQIDNGQSLQ 92 Query: 82 ASSYIGKNI 90 A++ IG + Sbjct: 93 ATALIGHGV 101 >gi|296102909|ref|YP_003613055.1| flagellar basal-body rod modification protein FlgD [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057368|gb|ADF62106.1| flagellar basal-body rod modification protein FlgD [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 236 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E QLA S + ++N+TL + + ++ Q Sbjct: 36 QSSFLTLLVAQLKNQDPTNPMQNNELTTQLAQISTVSGIEKLNTTLGSVSGQIDNSQSLQ 95 Query: 82 ASSYIGKNI 90 A+S IG + Sbjct: 96 AASLIGHGV 104 >gi|227328337|ref|ZP_03832361.1| flagellar basal body rod modification protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 224 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q+ FL LL+ Q+K+QDPT PM + V+QLA + + ++N+TL + + +N Q Sbjct: 32 QNQFLTLLVAQLKNQDPTNPMSNDQLVSQLAQLNTVSGIEKLNTTLGSISGQINNNQSMQ 91 Query: 82 ASSYIGKNI 90 A++ IG ++ Sbjct: 92 ATTLIGHSV 100 >gi|77359721|ref|YP_339296.1| flagellar basal body rod modification protein [Pseudoalteromonas haloplanktis TAC125] gi|76874632|emb|CAI85853.1| flagellar biosynthesis; initiation of hook assembly [Pseudoalteromonas haloplanktis TAC125] Length = 225 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 4/81 (4%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 +Q SK KS L Q+ F LL Q+ QDP++P + +AQ+ F+ E +NS Sbjct: 20 KQAASKDKSD-ALTQEDFFSLLTQQLSFQDPSKPADNDQMIAQMTSFTMAEGISNLNSNF 78 Query: 71 QEL---LKSNNLAQASSYIGK 88 + L + SN+ QAS+ +GK Sbjct: 79 EALAASMTSNSALQASTLVGK 99 >gi|254227982|ref|ZP_04921412.1| Flagellar hook capping protein [Vibrio sp. Ex25] gi|262396036|ref|YP_003287889.1| flagellar basal-body rod modification protein FlgD [Vibrio sp. Ex25] gi|151939478|gb|EDN58306.1| Flagellar hook capping protein [Vibrio sp. Ex25] gi|262339630|gb|ACY53424.1| flagellar basal-body rod modification protein FlgD [Vibrio sp. Ex25] Length = 227 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 34/48 (70%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72 ++ F+ L++ QI++QDP P+ +E V QLA FSQ++ + M+ T+Q+ Sbjct: 39 ENEFISLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVQSTENMSRTMQQ 86 >gi|317011117|gb|ADU84864.1| flagellar basal body rod modification protein [Helicobacter pylori SouthAfrica7] Length = 382 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 38/58 (65%), Gaps = 3/58 (5%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77 L +DAF+KL + Q+K+QDPT PM+ + + Q A +Q+E + T+QE+ +KSN Sbjct: 28 LDKDAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEVASAMKSN 85 >gi|188583763|ref|YP_001927208.1| flagellar hook capping protein [Methylobacterium populi BJ001] gi|179347261|gb|ACB82673.1| flagellar hook capping protein [Methylobacterium populi BJ001] Length = 223 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 47/72 (65%), Gaps = 4/72 (5%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNLAQASS 84 FL LL TQ+K+Q+P +P+ ++ QL F+ +EQ ++ N++L +L K+ + + AS Sbjct: 32 FLTLLTTQLKNQNPLDPLDTNQFTQQLVQFAGVEQQLKTNASLDTILTNSKAASASSASG 91 Query: 85 YIGKNITNADGS 96 IG+ IT ADG+ Sbjct: 92 LIGRTIT-ADGA 102 >gi|315127354|ref|YP_004069357.1| flagellar basal body rod modification protein [Pseudoalteromonas sp. SM9913] gi|315015868|gb|ADT69206.1| flagellar basal body rod modification protein [Pseudoalteromonas sp. SM9913] Length = 225 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 3/76 (3%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL-- 73 K + L Q+ F LL Q+ +QDP++P + +AQ+ F+ E +NS + L Sbjct: 24 KKEESDALTQEDFFSLLTQQLSYQDPSKPADNDQMIAQMTNFTMAEGISNLNSNFESLAA 83 Query: 74 -LKSNNLAQASSYIGK 88 + SN+ QAS+ +GK Sbjct: 84 SMTSNSALQASTLVGK 99 >gi|253688973|ref|YP_003018163.1| flagellar hook capping protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755551|gb|ACT13627.1| flagellar hook capping protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 224 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q+ FL LL+ Q+K+QDPT PM + V+QLA + + ++N+TL + + +N Q Sbjct: 32 QNQFLTLLVAQLKNQDPTNPMSNDQLVSQLAQLNTVSGIEKLNTTLGSISGQINNNQSMQ 91 Query: 82 ASSYIGKNI 90 A++ IG ++ Sbjct: 92 ATTLIGHSV 100 >gi|228914331|ref|ZP_04077946.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228845325|gb|EEM90361.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 190 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 6/123 (4%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASE---QVAQLAVFSQMEQSVQMNSTLQ 71 S K+ + +D FLKL + +HQDP M ++ Q AQL++ Q++ + LQ Sbjct: 43 STQKTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDKLQ 102 Query: 72 ELLKSNNLAQASSYIGK---NITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128 + S L ++GK ++N ++G V ++++ + VDN + + R Sbjct: 103 STMYSTALDGGMKFLGKYVRGVSNNGKQVTGQVETVRLAENNDVQLIVDNQVVSLRFIER 162 Query: 129 ISN 131 +S+ Sbjct: 163 VSD 165 >gi|228958032|ref|ZP_04119768.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar pakistani str. T13001] gi|229189849|ref|ZP_04316860.1| Flagellar hook assembly protein [Bacillus cereus ATCC 10876] gi|228593657|gb|EEK51465.1| Flagellar hook assembly protein [Bacillus cereus ATCC 10876] gi|228801657|gb|EEM48538.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar pakistani str. T13001] Length = 190 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 6/123 (4%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST---LQ 71 S K+ + +D FLKL + +HQDP M ++ + Q A S MEQ M LQ Sbjct: 43 SNQKTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDKLQ 102 Query: 72 ELLKSNNLAQASSYIGK---NITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128 + + L ++GK I N ++G V ++++ + VDN + + R Sbjct: 103 STMYTTALDGGMKFLGKYVRGINNKGEQVTGQVETVRLAENNDVQLIVDNQVVSLRFVER 162 Query: 129 ISN 131 +S+ Sbjct: 163 VSD 165 >gi|332284018|ref|YP_004415929.1| flagellar basal body rod modification protein [Pusillimonas sp. T7-7] gi|330427971|gb|AEC19305.1| flagellar basal body rod modification protein [Pusillimonas sp. T7-7] Length = 228 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA---Q 81 QD FL LL+TQ+++QDP PM ++ +Q+A S + Q+N+TL L +++ Q Sbjct: 31 QDRFLTLLVTQLQNQDPLNPMDNAQVTSQIAQLSTVNGINQLNTTLLALSGQMDVSQSMQ 90 Query: 82 ASSYIGKNI 90 A+ IGK + Sbjct: 91 AAGLIGKEV 99 >gi|260767922|ref|ZP_05876856.1| flagellar basal-body rod modification protein FlgD [Vibrio furnissii CIP 102972] gi|260615952|gb|EEX41137.1| flagellar basal-body rod modification protein FlgD [Vibrio furnissii CIP 102972] gi|315179625|gb|ADT86539.1| flagellar basal body rod modification protein D [Vibrio furnissii NCTC 11218] Length = 226 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 32/47 (68%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 Q+ F+ L++ QI++QDP P+ +E V QLA FSQ++ M+S +Q Sbjct: 38 QNEFISLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVQSMENMSSLMQ 84 >gi|227112520|ref|ZP_03826176.1| flagellar basal body rod modification protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 227 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q+ FL LL+ Q+K+QDPT PM + V+QLA + + ++N+TL + + +N Q Sbjct: 35 QNQFLTLLVAQLKNQDPTNPMSNDQLVSQLAQLNTVSGIEKLNTTLGSISGQINNNQSMQ 94 Query: 82 ASSYIGKNI 90 A++ IG ++ Sbjct: 95 ATTLIGHSV 103 >gi|228952132|ref|ZP_04114227.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228807664|gb|EEM54188.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 190 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/123 (25%), Positives = 58/123 (47%), Gaps = 6/123 (4%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASE---QVAQLAVFSQMEQSVQMNSTLQ 71 S K+ + +D FLKL + +HQDP M ++ Q AQL++ Q++ + LQ Sbjct: 43 SNQKTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDKLQ 102 Query: 72 ELLKSNNLAQASSYIGK---NITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128 + + L ++GK I N ++G V ++++ + VDN + + R Sbjct: 103 STMYTTALDGGMKFLGKYVRGINNKGEQVTGQVETVRLAENNDVQLIVDNQVVSLRFVER 162 Query: 129 ISN 131 +S+ Sbjct: 163 VSD 165 >gi|62179693|ref|YP_216110.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62127326|gb|AAX65029.1| flagellar biosynthesis, initiation of hook assembly [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322714163|gb|EFZ05734.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 232 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 3/90 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 NT V T S + S Q +FL LL+ Q+K+QDPT P++ +E QLA S + Sbjct: 12 NTGVKTTTGSGSMTGSNAADLQSSFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGI 71 Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNI 90 ++N+TL + + ++ QA++ IG + Sbjct: 72 EKLNTTLGAISGQIDNSQSLQATTLIGHGV 101 >gi|118477188|ref|YP_894339.1| flagellar basal body rod modification protein [Bacillus thuringiensis str. Al Hakam] gi|225863611|ref|YP_002748989.1| flagellar hook assembly protein family protein [Bacillus cereus 03BB102] gi|229183944|ref|ZP_04311160.1| Flagellar hook assembly protein [Bacillus cereus BGSC 6E1] gi|118416413|gb|ABK84832.1| basal-body rod modification protein [Bacillus thuringiensis str. Al Hakam] gi|225788388|gb|ACO28605.1| flagellar hook assembly protein family protein [Bacillus cereus 03BB102] gi|228599596|gb|EEK57200.1| Flagellar hook assembly protein [Bacillus cereus BGSC 6E1] Length = 190 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 6/123 (4%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASE---QVAQLAVFSQMEQSVQMNSTLQ 71 S K+ + +D FLKL + +HQDP M ++ Q AQL++ Q++ + LQ Sbjct: 43 STQKTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDKLQ 102 Query: 72 ELLKSNNLAQASSYIGK---NITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128 + S L ++GK ++N ++G V ++++ + VDN + + R Sbjct: 103 STMYSTALDGGMKFLGKYVRGVSNNGKQVTGQVETVRLAENNDVQLIVDNQVVSLRFIER 162 Query: 129 ISN 131 +S+ Sbjct: 163 VSD 165 >gi|30261750|ref|NP_844127.1| flagellar basal body rod modification protein [Bacillus anthracis str. Ames] gi|47526974|ref|YP_018323.1| flagellar basal body rod modification protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49184582|ref|YP_027834.1| flagellar basal body rod modification protein [Bacillus anthracis str. Sterne] gi|49477316|ref|YP_035872.1| flagellar basal body rod modification protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|167633353|ref|ZP_02391678.1| flagellar hook assembly protein family protein [Bacillus anthracis str. A0442] gi|167639172|ref|ZP_02397445.1| flagellar hook assembly protein family protein [Bacillus anthracis str. A0193] gi|170686321|ref|ZP_02877543.1| flagellar hook assembly protein family protein [Bacillus anthracis str. A0465] gi|170706446|ref|ZP_02896906.1| flagellar hook assembly protein family protein [Bacillus anthracis str. A0389] gi|177650541|ref|ZP_02933508.1| flagellar hook assembly protein family protein [Bacillus anthracis str. A0174] gi|190566416|ref|ZP_03019334.1| flagellar hook assembly protein family protein [Bacillus anthracis Tsiankovskii-I] gi|196045133|ref|ZP_03112366.1| flagellar hook assembly protein family protein [Bacillus cereus 03BB108] gi|218902867|ref|YP_002450701.1| flagellar hook assembly protein family protein [Bacillus cereus AH820] gi|228933036|ref|ZP_04095899.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228984837|ref|ZP_04145008.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229090714|ref|ZP_04221947.1| Flagellar hook assembly protein [Bacillus cereus Rock3-42] gi|229155323|ref|ZP_04283434.1| Flagellar hook assembly protein [Bacillus cereus ATCC 4342] gi|229600498|ref|YP_002866148.1| flagellar hook assembly protein family protein [Bacillus anthracis str. A0248] gi|254683243|ref|ZP_05147104.1| flagellar basal body rod modification protein [Bacillus anthracis str. CNEVA-9066] gi|254723829|ref|ZP_05185615.1| flagellar basal body rod modification protein [Bacillus anthracis str. A1055] gi|254734596|ref|ZP_05192308.1| flagellar basal body rod modification protein [Bacillus anthracis str. Western North America USA6153] gi|254741005|ref|ZP_05198693.1| flagellar basal body rod modification protein [Bacillus anthracis str. Kruger B] gi|254759784|ref|ZP_05211808.1| flagellar basal body rod modification protein [Bacillus anthracis str. Australia 94] gi|300117327|ref|ZP_07055117.1| flagellar basal body rod modification protein [Bacillus cereus SJ1] gi|301053290|ref|YP_003791501.1| flagellar hook assembly protein [Bacillus anthracis CI] gi|30255978|gb|AAP25613.1| flagellar hook assembly protein family protein [Bacillus anthracis str. Ames] gi|47502122|gb|AAT30798.1| flagellar hook assembly protein family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49178509|gb|AAT53885.1| flagellar hook assembly protein family protein [Bacillus anthracis str. Sterne] gi|49328872|gb|AAT59518.1| basal-body rod modification protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|167512962|gb|EDR88335.1| flagellar hook assembly protein family protein [Bacillus anthracis str. A0193] gi|167531391|gb|EDR94069.1| flagellar hook assembly protein family protein [Bacillus anthracis str. A0442] gi|170128544|gb|EDS97411.1| flagellar hook assembly protein family protein [Bacillus anthracis str. A0389] gi|170670018|gb|EDT20759.1| flagellar hook assembly protein family protein [Bacillus anthracis str. A0465] gi|172083685|gb|EDT68745.1| flagellar hook assembly protein family protein [Bacillus anthracis str. A0174] gi|190562551|gb|EDV16518.1| flagellar hook assembly protein family protein [Bacillus anthracis Tsiankovskii-I] gi|196024135|gb|EDX62809.1| flagellar hook assembly protein family protein [Bacillus cereus 03BB108] gi|218537170|gb|ACK89568.1| flagellar hook assembly protein family protein [Bacillus cereus AH820] gi|228628248|gb|EEK84964.1| Flagellar hook assembly protein [Bacillus cereus ATCC 4342] gi|228692656|gb|EEL46382.1| Flagellar hook assembly protein [Bacillus cereus Rock3-42] gi|228774889|gb|EEM23284.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228826637|gb|EEM72408.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229264906|gb|ACQ46543.1| flagellar hook assembly protein family protein [Bacillus anthracis str. A0248] gi|298725162|gb|EFI65814.1| flagellar basal body rod modification protein [Bacillus cereus SJ1] gi|300375459|gb|ADK04363.1| flagellar hook assembly protein [Bacillus cereus biovar anthracis str. CI] Length = 190 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 6/123 (4%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASE---QVAQLAVFSQMEQSVQMNSTLQ 71 S K+ + +D FLKL + +HQDP M ++ Q AQL++ Q++ + LQ Sbjct: 43 STQKTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDKLQ 102 Query: 72 ELLKSNNLAQASSYIGK---NITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128 + S L ++GK ++N ++G V ++++ + VDN + + R Sbjct: 103 STMYSTALDGGMKFLGKYVRGVSNNGKQVTGQVETVRLAENNDVQLIVDNQVVSLRFIER 162 Query: 129 ISN 131 +S+ Sbjct: 163 VSD 165 >gi|16760052|ref|NP_455669.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16764532|ref|NP_460147.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29142177|ref|NP_805519.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56413837|ref|YP_150912.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161614601|ref|YP_001588566.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167553036|ref|ZP_02346786.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168234102|ref|ZP_02659160.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168237258|ref|ZP_02662316.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168244775|ref|ZP_02669707.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168264031|ref|ZP_02686004.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168467128|ref|ZP_02700970.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168822619|ref|ZP_02834619.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194446242|ref|YP_002040430.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194450049|ref|YP_002045175.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194471560|ref|ZP_03077544.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194734983|ref|YP_002114175.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197249054|ref|YP_002146867.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197264764|ref|ZP_03164838.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197362760|ref|YP_002142397.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198243981|ref|YP_002215961.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200391018|ref|ZP_03217629.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204930747|ref|ZP_03221620.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205353086|ref|YP_002226887.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207857316|ref|YP_002243967.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213026535|ref|ZP_03340982.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213161845|ref|ZP_03347555.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213419884|ref|ZP_03352950.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213424679|ref|ZP_03357444.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213582036|ref|ZP_03363862.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213648925|ref|ZP_03378978.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213865506|ref|ZP_03387625.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289828581|ref|ZP_06546406.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|60392285|sp|P0A1I9|FLGD_SALTY RecName: Full=Basal-body rod modification protein flgD gi|60392286|sp|P0A1J0|FLGD_SALTI RecName: Full=Basal-body rod modification protein flgD gi|25355188|pir||AI0639 flagellar hook formation protein FlgD [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|534883|dbj|BAA04982.1| flagella [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16419693|gb|AAL20106.1| flagellar biosynthesis protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16502346|emb|CAD08300.1| flagellar hook formation protein FlgD [Salmonella enterica subsp. enterica serovar Typhi] gi|29137807|gb|AAO69368.1| flagellar hook formation protein FlgD [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56128094|gb|AAV77600.1| flagellar hook formation protein FlgD [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161363965|gb|ABX67733.1| hypothetical protein SPAB_02351 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194404905|gb|ACF65127.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194408353|gb|ACF68572.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194457924|gb|EDX46763.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194710485|gb|ACF89706.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195630307|gb|EDX48933.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197094237|emb|CAR59742.1| flagellar hook formation protein FlgD [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197212757|gb|ACH50154.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197243019|gb|EDY25639.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197289802|gb|EDY29163.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197938497|gb|ACH75830.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199603463|gb|EDZ02009.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204320206|gb|EDZ05410.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205272867|emb|CAR37796.1| flagellar hook formation protein FlgD [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205322429|gb|EDZ10268.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205331933|gb|EDZ18697.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205336417|gb|EDZ23181.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205341045|gb|EDZ27809.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205347362|gb|EDZ33993.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206709119|emb|CAR33452.1| flagellar hook formation protein FlgD [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261246387|emb|CBG24196.1| flagellar hook formation protein FlgD [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992950|gb|ACY87835.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157717|emb|CBW17209.1| flagellar hook formation protein FlgD [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912163|dbj|BAJ36137.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320086384|emb|CBY96157.1| Basal-body rod modification protein flgD [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321223794|gb|EFX48857.1| Flagellar basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322616546|gb|EFY13455.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620513|gb|EFY17377.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622507|gb|EFY19352.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629658|gb|EFY26433.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632622|gb|EFY29368.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636883|gb|EFY33586.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641579|gb|EFY38217.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644069|gb|EFY40615.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650031|gb|EFY46449.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653956|gb|EFY50279.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658488|gb|EFY54750.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663346|gb|EFY59548.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322670080|gb|EFY66220.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674856|gb|EFY70947.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676674|gb|EFY72741.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682596|gb|EFY78615.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686651|gb|EFY82630.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323129446|gb|ADX16876.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323195765|gb|EFZ80941.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198343|gb|EFZ83447.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203173|gb|EFZ88203.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209176|gb|EFZ94113.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323209680|gb|EFZ94609.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217864|gb|EGA02579.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222152|gb|EGA06536.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224924|gb|EGA09182.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229666|gb|EGA13789.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323232891|gb|EGA16987.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240626|gb|EGA24668.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242940|gb|EGA26961.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323250257|gb|EGA34146.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252632|gb|EGA36470.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258840|gb|EGA42493.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261029|gb|EGA44622.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266938|gb|EGA50423.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269979|gb|EGA53428.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326623709|gb|EGE30054.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326628166|gb|EGE34509.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 232 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 3/90 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 NT V T S + S Q +FL LL+ Q+K+QDPT P++ +E QLA S + Sbjct: 12 NTGVKTTTGSGSMTGSNAADLQSSFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGI 71 Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNI 90 ++N+TL + + ++ QA++ IG + Sbjct: 72 EKLNTTLGAISGQIDNSQSLQATTLIGHGV 101 >gi|65319022|ref|ZP_00391981.1| COG1843: Flagellar hook capping protein [Bacillus anthracis str. A2012] Length = 190 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 6/123 (4%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASE---QVAQLAVFSQMEQSVQMNSTLQ 71 S K+ + +D FLKL + +HQDP M ++ Q AQL++ Q++ + LQ Sbjct: 43 STQKTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDKLQ 102 Query: 72 ELLKSNNLAQASSYIGK---NITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128 + S L ++GK ++N ++G V ++++ + VDN + + R Sbjct: 103 STMYSTALDGGMKFLGKYVRGVSNNGKQVTGQVETVRLAENNDVQLIVDNQVVSLRFIER 162 Query: 129 ISN 131 +S+ Sbjct: 163 VSD 165 >gi|30019796|ref|NP_831427.1| flagellar basal body rod modification protein [Bacillus cereus ATCC 14579] gi|229127078|ref|ZP_04256077.1| Flagellar hook assembly protein [Bacillus cereus BDRD-Cer4] gi|229144364|ref|ZP_04272770.1| Flagellar hook assembly protein [Bacillus cereus BDRD-ST24] gi|229149955|ref|ZP_04278183.1| Flagellar hook assembly protein [Bacillus cereus m1550] gi|296502352|ref|YP_003664052.1| flagellar basal body rod modification protein [Bacillus thuringiensis BMB171] gi|29895341|gb|AAP08628.1| Basal-body rod modification protein flgD [Bacillus cereus ATCC 14579] gi|228633636|gb|EEK90237.1| Flagellar hook assembly protein [Bacillus cereus m1550] gi|228639151|gb|EEK95575.1| Flagellar hook assembly protein [Bacillus cereus BDRD-ST24] gi|228656431|gb|EEL12270.1| Flagellar hook assembly protein [Bacillus cereus BDRD-Cer4] gi|296323404|gb|ADH06332.1| flagellar basal body rod modification protein [Bacillus thuringiensis BMB171] Length = 190 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/123 (25%), Positives = 58/123 (47%), Gaps = 6/123 (4%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASE---QVAQLAVFSQMEQSVQMNSTLQ 71 S K+ + +D FLKL + +HQDP M ++ Q AQL++ Q++ + LQ Sbjct: 43 SNQKTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDKLQ 102 Query: 72 ELLKSNNLAQASSYIGK---NITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128 + + L ++GK I N ++G V ++++ + VDN + + R Sbjct: 103 STMYTTALDGGMKFLGKYVRGINNKGEQVTGQVETVRLAENNDVQLIVDNQVVSLRFVER 162 Query: 129 ISN 131 +S+ Sbjct: 163 VSD 165 >gi|162419120|ref|YP_001606472.1| flagellar basal body rod modification protein [Yersinia pestis Angola] gi|162351935|gb|ABX85883.1| basal-body rod modification protein FlgD [Yersinia pestis Angola] Length = 225 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q+ FL LL+ Q+K+QDPT PM+ +E QLA + + ++N+TL + + S+ Sbjct: 29 QNRFLTLLVAQLKNQDPTNPMENNELTTQLAQINTVSGIEKLNTTLGAITGQIDSSQSLY 88 Query: 82 ASSYIGKNI 90 A+S IG+ + Sbjct: 89 ATSLIGRGV 97 >gi|22126391|ref|NP_669814.1| flagellar basal body rod modification protein [Yersinia pestis KIM 10] gi|45441410|ref|NP_992949.1| flagellar basal body rod modification protein [Yersinia pestis biovar Microtus str. 91001] gi|108807172|ref|YP_651088.1| flagellar basal body rod modification protein [Yersinia pestis Antiqua] gi|108812484|ref|YP_648251.1| flagellar basal body rod modification protein [Yersinia pestis Nepal516] gi|145598611|ref|YP_001162687.1| flagellar basal body rod modification protein [Yersinia pestis Pestoides F] gi|149366252|ref|ZP_01888287.1| basal-body rod modification protein FlgD [Yersinia pestis CA88-4125] gi|165925901|ref|ZP_02221733.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Orientalis str. F1991016] gi|165938661|ref|ZP_02227216.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Orientalis str. IP275] gi|166010833|ref|ZP_02231731.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Antiqua str. E1979001] gi|166210989|ref|ZP_02237024.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Antiqua str. B42003004] gi|167401100|ref|ZP_02306603.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420264|ref|ZP_02312017.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425865|ref|ZP_02317618.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167469719|ref|ZP_02334423.1| flagellar basal body rod modification protein [Yersinia pestis FV-1] gi|218928921|ref|YP_002346796.1| flagellar basal body rod modification protein [Yersinia pestis CO92] gi|229896241|ref|ZP_04511411.1| basal-body rod modification protein FlgD [Yersinia pestis Pestoides A] gi|229897176|ref|ZP_04512332.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Orientalis str. PEXU2] gi|229897902|ref|ZP_04513053.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Orientalis str. India 195] gi|229902866|ref|ZP_04517983.1| basal-body rod modification protein FlgD [Yersinia pestis Nepal516] gi|270486646|ref|ZP_06203720.1| flagellar hook capping protein [Yersinia pestis KIM D27] gi|294504031|ref|YP_003568093.1| basal-body rod modification protein FlgD [Yersinia pestis Z176003] gi|21959378|gb|AAM86065.1|AE013854_1 basal-body rod modification protein [Yersinia pestis KIM 10] gi|45436271|gb|AAS61826.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Microtus str. 91001] gi|108776132|gb|ABG18651.1| basal-body rod modification protein FlgD [Yersinia pestis Nepal516] gi|108779085|gb|ABG13143.1| basal-body rod modification protein FlgD [Yersinia pestis Antiqua] gi|115347532|emb|CAL20441.1| basal-body rod modification protein FlgD [Yersinia pestis CO92] gi|145210307|gb|ABP39714.1| basal-body rod modification protein FlgD [Yersinia pestis Pestoides F] gi|149292665|gb|EDM42739.1| basal-body rod modification protein FlgD [Yersinia pestis CA88-4125] gi|165913275|gb|EDR31897.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Orientalis str. IP275] gi|165922105|gb|EDR39282.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Orientalis str. F1991016] gi|165990177|gb|EDR42478.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Antiqua str. E1979001] gi|166208169|gb|EDR52649.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Antiqua str. B42003004] gi|166961959|gb|EDR57980.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049489|gb|EDR60897.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055264|gb|EDR65061.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229680313|gb|EEO76412.1| basal-body rod modification protein FlgD [Yersinia pestis Nepal516] gi|229688943|gb|EEO81008.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Orientalis str. India 195] gi|229693513|gb|EEO83562.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701164|gb|EEO89193.1| basal-body rod modification protein FlgD [Yersinia pestis Pestoides A] gi|262361783|gb|ACY58504.1| basal-body rod modification protein FlgD [Yersinia pestis D106004] gi|262366081|gb|ACY62638.1| basal-body rod modification protein FlgD [Yersinia pestis D182038] gi|270335150|gb|EFA45927.1| flagellar hook capping protein [Yersinia pestis KIM D27] gi|294354490|gb|ADE64831.1| basal-body rod modification protein FlgD [Yersinia pestis Z176003] gi|320015468|gb|ADV99039.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 225 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q+ FL LL+ Q+K+QDPT PM+ +E QLA + + ++N+TL + + S+ Sbjct: 29 QNRFLTLLVAQLKNQDPTNPMENNELTTQLAQINTVSGIEKLNTTLGAITGQIDSSQSLY 88 Query: 82 ASSYIGKNI 90 A+S IG+ + Sbjct: 89 ATSLIGRGV 97 >gi|150019074|ref|YP_001311328.1| flagellar hook capping protein [Clostridium beijerinckii NCIMB 8052] gi|149905539|gb|ABR36372.1| flagellar hook capping protein [Clostridium beijerinckii NCIMB 8052] Length = 339 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 37/55 (67%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72 K+ T+ +++FLK+L Q+ + DPT+ +S V+Q+A F+ MEQ +N+T+ + Sbjct: 30 KTDNTMDKNSFLKILSAQLSNLDPTQNQDSSAYVSQMAQFASMEQMQNLNTTMSD 84 >gi|229043507|ref|ZP_04191217.1| Flagellar hook assembly protein [Bacillus cereus AH676] gi|228725885|gb|EEL77132.1| Flagellar hook assembly protein [Bacillus cereus AH676] Length = 190 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 6/123 (4%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST---LQ 71 S K+ + +D FLKL + +HQDP M ++ + Q A S MEQ M LQ Sbjct: 43 SNQKTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDKLQ 102 Query: 72 ELLKSNNLAQASSYIGK---NITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128 + + L ++GK I N ++G V ++++ + VDN + + R Sbjct: 103 STMYTTALDGGMKFLGKYVRGINNKGEQVTGQVETVRLAENNDVQLIVDNQVVSLRFVER 162 Query: 129 ISN 131 +S+ Sbjct: 163 VSD 165 >gi|224584320|ref|YP_002638118.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224468847|gb|ACN46677.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 232 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 3/90 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 NT V T S + S Q +FL LL+ Q+K+QDPT P++ +E QLA S + Sbjct: 12 NTGVKTTTGSGSMTGSNAADLQSSFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGI 71 Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNI 90 ++N+TL + + ++ QA++ IG + Sbjct: 72 EKLNTTLGAISGQIDNSQSLQATTLIGHGV 101 >gi|52143705|ref|YP_083123.1| flagellar basal body rod modification protein [Bacillus cereus E33L] gi|228945355|ref|ZP_04107710.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|51977174|gb|AAU18724.1| basal-body rod modification protein [Bacillus cereus E33L] gi|228814327|gb|EEM60593.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 190 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 6/123 (4%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASE---QVAQLAVFSQMEQSVQMNSTLQ 71 S K+ + +D FLKL + +HQDP M ++ Q AQL++ Q++ + LQ Sbjct: 43 STQKTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDKLQ 102 Query: 72 ELLKSNNLAQASSYIGK---NITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128 + S L ++GK ++N ++G V ++++ + VDN + + R Sbjct: 103 STMYSTALDGGMKFLGKYVRGVSNNGKQVTGQVETVRLAENNDVQLIVDNQVVSLRFIER 162 Query: 129 ISN 131 +S+ Sbjct: 163 VSD 165 >gi|165869506|ref|ZP_02214165.1| flagellar hook assembly protein family protein [Bacillus anthracis str. A0488] gi|227815487|ref|YP_002815496.1| flagellar hook assembly protein family protein [Bacillus anthracis str. CDC 684] gi|254755248|ref|ZP_05207282.1| flagellar basal body rod modification protein [Bacillus anthracis str. Vollum] gi|164714946|gb|EDR20464.1| flagellar hook assembly protein family protein [Bacillus anthracis str. A0488] gi|227007323|gb|ACP17066.1| flagellar hook assembly protein family protein [Bacillus anthracis str. CDC 684] Length = 198 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 6/123 (4%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASE---QVAQLAVFSQMEQSVQMNSTLQ 71 S K+ + +D FLKL + +HQDP M ++ Q AQL++ Q++ + LQ Sbjct: 43 STQKTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDKLQ 102 Query: 72 ELLKSNNLAQASSYIGK---NITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128 + S L ++GK ++N ++G V ++++ + VDN + + R Sbjct: 103 STMYSTALDGGMKFLGKYVRGVSNNGKQVTGQVETVRLAENNDVQLIVDNQVVSLRFIER 162 Query: 129 ISN 131 +S+ Sbjct: 163 VSD 165 >gi|291532059|emb|CBK97644.1| Flagellar hook capping protein [Eubacterium siraeum 70/3] Length = 224 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 63/123 (51%), Gaps = 13/123 (10%) Query: 14 FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73 F S T+ D F LL+ ++ +QDP EP +E V+Q+A F+ ++ Q+ Sbjct: 21 FKNSGKNDTISTDTFFSLLMAEMSNQDPLEPTSNTEFVSQMAQFTALQAQ-------QDN 73 Query: 74 LKSNNLAQASSYIGKNIT-NA---DGS-ISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128 LK + A+ +GK +T NA DG+ +SGV + +S + + + VD + ++ Sbjct: 74 LKYSMSNYAAGLVGKTLTMNAQSDDGTLLSGVCTGVNISGSDV-KVVVDGKQYDLSAVKA 132 Query: 129 ISN 131 IS+ Sbjct: 133 ISD 135 >gi|237731006|ref|ZP_04561487.1| flagellar hook protein FlgE [Citrobacter sp. 30_2] gi|226906545|gb|EEH92463.1| flagellar hook protein FlgE [Citrobacter sp. 30_2] Length = 232 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT P++ +E QLA S + ++N+TL + + ++ Q Sbjct: 33 QSSFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 92 Query: 82 ASSYIGKNI 90 AS+ IG + Sbjct: 93 ASTLIGHGV 101 >gi|167750724|ref|ZP_02422851.1| hypothetical protein EUBSIR_01702 [Eubacterium siraeum DSM 15702] gi|167656403|gb|EDS00533.1| hypothetical protein EUBSIR_01702 [Eubacterium siraeum DSM 15702] Length = 224 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 63/123 (51%), Gaps = 13/123 (10%) Query: 14 FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73 F S T+ D F LL+ ++ +QDP EP +E V+Q+A F+ ++ Q+ Sbjct: 21 FKNSGKNDTISTDTFFSLLMAEMSNQDPLEPTSNTEFVSQMAQFTALQAQ-------QDN 73 Query: 74 LKSNNLAQASSYIGKNIT-NA---DGS-ISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128 LK + A+ +GK +T NA DG+ +SGV + +S + + + VD + ++ Sbjct: 74 LKYSMSNYAAGLVGKTLTMNAQSDDGTLLSGVCTGVNISGSDV-KVVVDGKQYDLSAVKA 132 Query: 129 ISN 131 IS+ Sbjct: 133 ISD 135 >gi|182418374|ref|ZP_02949669.1| flagellar hook assembly protein FlgD [Clostridium butyricum 5521] gi|237666720|ref|ZP_04526705.1| flagellar hook capping protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377756|gb|EDT75300.1| flagellar hook assembly protein FlgD [Clostridium butyricum 5521] gi|237657919|gb|EEP55474.1| flagellar hook capping protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 308 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 34/51 (66%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73 LGQ+AFL +L+ ++ + DPT+ ++ V Q+A F+ +EQ +N+T++ Sbjct: 25 LGQNAFLNILVAELSNMDPTKDQDSTAYVTQMAEFASIEQLNNLNTTMKNF 75 >gi|332531617|ref|ZP_08407514.1| flagellar hook capping protein [Hylemonella gracilis ATCC 19624] gi|332038980|gb|EGI75409.1| flagellar hook capping protein [Hylemonella gracilis ATCC 19624] Length = 237 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 3/77 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 QD FLKLL+ QI +QDP PM ++ +Q+A + + +N T++ L S + Q Sbjct: 32 QDRFLKLLVAQISNQDPLNPMDNAQMTSQMAQINTVTGIENLNQTVKNLGNQFTSMQVLQ 91 Query: 82 ASSYIGKNITNADGSIS 98 ++ +G+ + AD ++S Sbjct: 92 GTALVGREVMVADTTLS 108 >gi|219682253|ref|YP_002468637.1| basal-body rod modification protein FlgD [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219621986|gb|ACL30142.1| basal-body rod modification protein FlgD [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|311086077|gb|ADP66159.1| basal-body rod modification protein FlgD [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086648|gb|ADP66729.1| basal-body rod modification protein FlgD [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087234|gb|ADP67314.1| basal-body rod modification protein FlgD [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 236 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q FL LLI QIK+QDPT+P+K S+ +QLA + ++N+T+ + + N Q Sbjct: 43 QKNFLSLLIAQIKNQDPTDPIKNSDLTSQLAQINTASGMQKLNNTVDQFSNQISKNQNIQ 102 Query: 82 ASSYIGKNI 90 S+ IG+++ Sbjct: 103 LSTLIGRHV 111 >gi|291558203|emb|CBL35320.1| Flagellar hook capping protein [Eubacterium siraeum V10Sc8a] Length = 224 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 63/123 (51%), Gaps = 13/123 (10%) Query: 14 FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73 F S T+ D F LL+ ++ +QDP EP +E V+Q+A F+ ++ Q+ Sbjct: 21 FKNSGKNDTISTDTFFSLLMAEMSNQDPLEPTSNTEFVSQMAQFTALQAQ-------QDN 73 Query: 74 LKSNNLAQASSYIGKNIT-NA---DGS-ISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128 LK + A+ +GK +T NA DG+ +SGV + +S + + + VD + ++ Sbjct: 74 LKYSMSNYAAGLVGKTLTMNAQSDDGTLLSGVCTGVSISGSDV-KVVVDGKQYDLSAVKA 132 Query: 129 ISN 131 IS+ Sbjct: 133 ISD 135 >gi|283833631|ref|ZP_06353372.1| basal-body rod modification protein FlgD [Citrobacter youngae ATCC 29220] gi|291071314|gb|EFE09423.1| basal-body rod modification protein FlgD [Citrobacter youngae ATCC 29220] Length = 232 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT P++ +E QLA S + ++N+TL + + ++ Q Sbjct: 33 QSSFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 92 Query: 82 ASSYIGKNI 90 AS+ IG + Sbjct: 93 ASTLIGHGV 101 >gi|311087753|gb|ADP67832.1| basal-body rod modification protein FlgD [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 236 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q FL LLI QIK+QDPT+P+K S+ +QLA + ++N+T+ + + N Q Sbjct: 43 QKNFLSLLIAQIKNQDPTDPIKNSDLTSQLAQINTASGMQKLNNTVDQFSNQISKNQNIQ 102 Query: 82 ASSYIGKNI 90 S+ IG+++ Sbjct: 103 LSTLIGRHV 111 >gi|15616945|ref|NP_240158.1| basal-body rod modification protein FlgD [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681698|ref|YP_002468084.1| basal-body rod modification protein FlgD [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471394|ref|ZP_05635393.1| basal-body rod modification protein FlgD [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|11386806|sp|P57421|FLGD_BUCAI RecName: Full=Basal-body rod modification protein flgD gi|25355178|pir||D84969 basal-body rod modification protein flgD [imported] - Buchnera sp. (strain APS) gi|10039010|dbj|BAB13044.1| basal-body rod modification protein flgD [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219624541|gb|ACL30696.1| basal-body rod modification protein FlgD [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 236 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q FL LLI QIK+QDPT+P+K S+ +QLA + ++N+T+ + + N Q Sbjct: 43 QKNFLSLLIAQIKNQDPTDPIKNSDLTSQLAQINTASGMQKLNNTVDQFSNQISKNQNIQ 102 Query: 82 ASSYIGKNI 90 S+ IG+++ Sbjct: 103 LSTLIGRHV 111 >gi|268589983|ref|ZP_06124204.1| basal-body rod modification protein FlgD [Providencia rettgeri DSM 1131] gi|291314701|gb|EFE55154.1| basal-body rod modification protein FlgD [Providencia rettgeri DSM 1131] Length = 285 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASE---QVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ 81 +D FLK+++TQ+++QDPT+PM+ ++ Q+AQ+A M + S + + + S Q Sbjct: 35 RDTFLKMIVTQMQNQDPTKPMENTDLTSQLAQIATLESMNKLSDSVSGISQQIGSGQSLQ 94 Query: 82 ASSYIGKNI 90 A+ +GK + Sbjct: 95 ATQLVGKGV 103 >gi|308063737|gb|ADO05624.1| flagellar basal body rod modification protein [Helicobacter pylori Sat464] Length = 309 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 38/58 (65%), Gaps = 3/58 (5%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77 L ++AFLKL + Q+K+QDPT PM+ + + Q A +Q+E + T+QE+ +KSN Sbjct: 28 LDKNAFLKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEVASAMKSN 85 >gi|88811800|ref|ZP_01127054.1| flagellar basal body rod modification protein [Nitrococcus mobilis Nb-231] gi|88791191|gb|EAR22304.1| flagellar basal body rod modification protein [Nitrococcus mobilis Nb-231] Length = 221 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 42/69 (60%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 QD FLK+++ Q+++Q+P +PM E + Q+A F+ Q+ S+ Q ++SN Q Sbjct: 28 QDDFLKMMVAQLQNQNPLKPMSNGEFLTQIAQFTSASGIEQLQSSFQAFQTNMQSNLALQ 87 Query: 82 ASSYIGKNI 90 A+S +G+ + Sbjct: 88 AASLVGRQV 96 >gi|157146227|ref|YP_001453546.1| flagellar basal body rod modification protein [Citrobacter koseri ATCC BAA-895] gi|157083432|gb|ABV13110.1| hypothetical protein CKO_01984 [Citrobacter koseri ATCC BAA-895] Length = 232 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT P++ +E QLA S + ++N+TL + + ++ Q Sbjct: 33 QSSFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGIEKLNTTLGAISGQIDNSQSLQ 92 Query: 82 ASSYIGKNI 90 AS+ IG + Sbjct: 93 ASTLIGHGV 101 >gi|83950599|ref|ZP_00959332.1| Possible FlgD protein [Roseovarius nubinhibens ISM] gi|83838498|gb|EAP77794.1| Possible FlgD protein [Roseovarius nubinhibens ISM] Length = 227 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 36/64 (56%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69 TQ E S + + FLK+L Q+++QDP P++ ++ QLA FS +EQ V+ N Sbjct: 21 TQAESDSSSRAISADFETFLKMLTVQMRNQDPLNPVEGTDFAVQLATFSTVEQQVRTNDL 80 Query: 70 LQEL 73 L L Sbjct: 81 LGAL 84 >gi|196039031|ref|ZP_03106338.1| flagellar hook capping protein [Bacillus cereus NVH0597-99] gi|228926788|ref|ZP_04089856.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229121304|ref|ZP_04250535.1| Flagellar hook assembly protein [Bacillus cereus 95/8201] gi|196030176|gb|EDX68776.1| flagellar hook capping protein [Bacillus cereus NVH0597-99] gi|228662149|gb|EEL17758.1| Flagellar hook assembly protein [Bacillus cereus 95/8201] gi|228832901|gb|EEM78470.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 190 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 6/120 (5%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASE---QVAQLAVFSQMEQSVQMNSTLQELL 74 K+ + +D FLKL + +HQDP M ++ Q AQL++ Q++ + LQ + Sbjct: 46 KTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDKLQSTM 105 Query: 75 KSNNLAQASSYIGK---NITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 S L ++GK ++N ++G V ++++ + VDN + + R+S+ Sbjct: 106 YSTALDGGMKFLGKYVRGVSNNGKQVTGQVETVRLAENNDVQLIVDNQVVSLRFIERVSD 165 >gi|28900121|ref|NP_799776.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus RIMD 2210633] gi|153837050|ref|ZP_01989717.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus AQ3810] gi|260365771|ref|ZP_05778267.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus K5030] gi|260880693|ref|ZP_05893048.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus AN-5034] gi|260897701|ref|ZP_05906197.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus Peru-466] gi|260899388|ref|ZP_05907783.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus AQ4037] gi|1272367|gb|AAA97475.1| LfgD [Vibrio parahaemolyticus] gi|28808404|dbj|BAC61609.1| LfgD [Vibrio parahaemolyticus RIMD 2210633] gi|149749638|gb|EDM60383.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus AQ3810] gi|308086232|gb|EFO35927.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus Peru-466] gi|308091965|gb|EFO41660.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus AN-5034] gi|308109288|gb|EFO46828.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus AQ4037] gi|308114994|gb|EFO52534.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus K5030] gi|328470100|gb|EGF41011.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus 10329] Length = 227 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 32/47 (68%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 Q+ F+ L++ QI++QDP P+ +E V QLA FSQ++ + M+ +Q Sbjct: 39 QNEFISLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVQSTENMSKVMQ 85 >gi|308062225|gb|ADO04113.1| flagellar basal body rod modification protein [Helicobacter pylori Cuz20] Length = 319 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 38/58 (65%), Gaps = 3/58 (5%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77 L ++AFLKL + Q+K+QDPT PM+ + + Q A +Q+E + T+QE+ +KSN Sbjct: 28 LDKNAFLKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEVASAMKSN 85 >gi|332296629|ref|YP_004438552.1| flagellar hook capping protein [Thermodesulfobium narugense DSM 14796] gi|332179732|gb|AEE15421.1| flagellar hook capping protein [Thermodesulfobium narugense DSM 14796] Length = 139 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 45/73 (61%), Gaps = 2/73 (2%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSY 85 +AFL LLI Q+K+QDP + M +E + +L+ + +Q M++++Q + + N A++ Sbjct: 32 NAFLTLLIAQLKNQDPLDAMSTNEFMNELSALTTTQQMTNMSNSVQNSMTNINNLYATNL 91 Query: 86 IGKNI--TNADGS 96 IGK I T AD S Sbjct: 92 IGKKIQYTAADNS 104 >gi|315453408|ref|YP_004073678.1| flagellar hook assembly protein [Helicobacter felis ATCC 49179] gi|315132460|emb|CBY83088.1| flagellar hook assembly protein [Helicobacter felis ATCC 49179] Length = 375 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/94 (28%), Positives = 52/94 (55%), Gaps = 11/94 (11%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82 L +DAF+KL + Q+K+QDPT PM+ + + Q A +Q+E + T++E+ N Q+ Sbjct: 28 LDKDAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEESKKTMKEVA---NAMQS 84 Query: 83 SSYIGKNITNADGSI--------SGVVNAIQVSS 108 S +++ + G + G+ N+++ S+ Sbjct: 85 SKETNQSLKDFQGKLKDTLEHLDKGMDNSLKASA 118 >gi|254499107|ref|ZP_05111797.1| Putative flagellar hook capping protein [Legionella drancourtii LLAP12] gi|254351646|gb|EET10491.1| Putative flagellar hook capping protein [Legionella drancourtii LLAP12] Length = 123 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/96 (27%), Positives = 55/96 (57%), Gaps = 4/96 (4%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82 +GQ ++K+ + ++ +QDP +P+ E +AQ+A FS ++Q+ N L +L++ + + Sbjct: 10 VGQADYMKVFMQELTYQDPLKPIDNREFMAQMAQFSTLQQASASNENLMKLIQLHYGNRG 69 Query: 83 SSYIGKN--ITNADGSISGVVNAIQVSSTGLTAITV 116 S +G + IT +G G+V AI+ + + + + Sbjct: 70 LSLLGHSVKITGEEG--YGLVEAIRFTEEQMPEVRI 103 >gi|156934441|ref|YP_001438357.1| flagellar basal body rod modification protein [Cronobacter sakazakii ATCC BAA-894] gi|156532695|gb|ABU77521.1| hypothetical protein ESA_02272 [Cronobacter sakazakii ATCC BAA-894] Length = 226 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 5/70 (7%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL----QELLKSNNLA 80 Q +FL LL+ Q+K+QDPT PM+ +E QLA S + ++N+TL ++ S +LA Sbjct: 34 QSSFLTLLVAQLKNQDPTNPMQNNELTTQLAQISTVSGIEKLNTTLGSISGQIDNSQSLA 93 Query: 81 QASSYIGKNI 90 AS+ IG + Sbjct: 94 -ASALIGHGV 102 >gi|188527732|ref|YP_001910419.1| flagellar basal body rod modification protein [Helicobacter pylori Shi470] gi|188143972|gb|ACD48389.1| flagellar basal body rod modification protein [Helicobacter pylori Shi470] Length = 324 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 38/58 (65%), Gaps = 3/58 (5%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77 L ++AFLKL + Q+K+QDPT PM+ + + Q A +Q+E + T+QE+ +KSN Sbjct: 28 LDKNAFLKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEVASAMKSN 85 >gi|82544459|ref|YP_408406.1| flagellar basal body rod modification protein [Shigella boydii Sb227] gi|81245870|gb|ABB66578.1| initiation of hook assembly [Shigella boydii Sb227] gi|320186978|gb|EFW61691.1| Flagellar basal-body rod modification protein FlgD [Shigella flexneri CDC 796-83] gi|332094132|gb|EGI99184.1| basal-body rod modification protein flgD [Shigella boydii 3594-74] Length = 231 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASE---QVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E Q+AQ++ S +E+ M ++ + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTMLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNI 90 AS+ IG + Sbjct: 92 ASNLIGHGV 100 >gi|260597444|ref|YP_003210015.1| flagellar basal body rod modification protein [Cronobacter turicensis z3032] gi|260216621|emb|CBA29915.1| Basal-body rod modification protein flgD [Cronobacter turicensis z3032] Length = 202 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 5/70 (7%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL----QELLKSNNLA 80 Q +FL LL+ Q+K+QDPT PM+ +E QLA S + ++N+TL ++ S +LA Sbjct: 10 QSSFLTLLVAQLKNQDPTNPMQNNELTTQLAQISTVSGIEKLNTTLGSISGQIDNSQSLA 69 Query: 81 QASSYIGKNI 90 AS+ IG + Sbjct: 70 -ASALIGHGV 78 >gi|134297199|ref|YP_001120934.1| flagellar basal body rod modification protein [Burkholderia vietnamiensis G4] gi|134140356|gb|ABO56099.1| flagellar hook capping protein [Burkholderia vietnamiensis G4] Length = 248 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+NS+L L L + Q Sbjct: 39 QATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNSSLSSLSTQLAAGQQTQ 98 Query: 82 ASSYIGKNI 90 A+ IG N+ Sbjct: 99 AALLIGTNV 107 >gi|86747890|ref|YP_484386.1| flagellar hook capping protein [Rhodopseudomonas palustris HaA2] gi|86570918|gb|ABD05475.1| Flagellar hook capping protein [Rhodopseudomonas palustris HaA2] Length = 220 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 3/67 (4%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN---LAQASS 84 F+ LLIT++++Q+P EP ++ V QL ++ EQ +N+ L L S N +S+ Sbjct: 31 FMTLLITELQNQNPLEPTSTTDFVNQLTSYANYEQQQTLNANLTTLTTSLNSLLTLNSSN 90 Query: 85 YIGKNIT 91 YIG+ +T Sbjct: 91 YIGQTVT 97 >gi|300716217|ref|YP_003741020.1| flagellar biosynthesis, initiation of hook assembly [Erwinia billingiae Eb661] gi|299062053|emb|CAX59169.1| Flagellar biosynthesis, initiation of hook assembly [Erwinia billingiae Eb661] Length = 223 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q FL LL+TQ+++QDPT PM S+ QLA + + ++N+TL + + S Q Sbjct: 31 QSNFLTLLVTQLQNQDPTNPMDNSQLTTQLAQINTLSGIEKLNTTLGSISGQINSGQSLQ 90 Query: 82 ASSYIGKNI 90 A++ IG + Sbjct: 91 ATTLIGHGV 99 >gi|89902476|ref|YP_524947.1| flagellar hook capping protein [Rhodoferax ferrireducens T118] gi|89347213|gb|ABD71416.1| flagellar hook capping protein [Rhodoferax ferrireducens T118] Length = 223 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 QD FLKLL+ Q+ +QDP PM ++ +Q+A + + Q+N TL+ + S + Q Sbjct: 36 QDRFLKLLVAQLNNQDPMNPMDNAQMTSQMAQINTVTGIQQVNETLKSMAAQFTSLQVLQ 95 Query: 82 ASSYIGKNI 90 +S +G N+ Sbjct: 96 GASMVGHNV 104 >gi|237751427|ref|ZP_04581907.1| flagellar basal body rod modification protein [Helicobacter bilis ATCC 43879] gi|229372793|gb|EEO23184.1| flagellar basal body rod modification protein [Helicobacter bilis ATCC 43879] Length = 507 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 36/54 (66%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 L +DAF+KL + Q+K+QDPT PM+ + + Q A +Q+E + T++E+ ++ Sbjct: 28 LDKDAFMKLFLEQLKNQDPTSPMETDKIITQTAQLTQVEMQEENKKTMKEVAQA 81 >gi|262276418|ref|ZP_06054227.1| flagellar basal-body rod modification protein FlgD [Grimontia hollisae CIP 101886] gi|262220226|gb|EEY71542.1| flagellar basal-body rod modification protein FlgD [Grimontia hollisae CIP 101886] Length = 248 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 11/90 (12%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNL 79 L Q+ FL LL Q+ +QDP +P+ + +AQ+A F+ ++ +MN +L + S+ Sbjct: 41 LKQEDFLSLLTKQLANQDPFKPVDNEQMIAQMASFATVDGIGKMNEQFGSLNAAMTSSQA 100 Query: 80 AQASSYIGKNI--------TNADGSISGVV 101 QASS +G+++ + +G I+G+V Sbjct: 101 LQASSLVGQDVLVPGNEGFKSVEGGIAGMV 130 >gi|87119677|ref|ZP_01075574.1| flagellar basal body rod modification protein [Marinomonas sp. MED121] gi|86165153|gb|EAQ66421.1| flagellar basal body rod modification protein [Marinomonas sp. MED121] Length = 230 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 3/79 (3%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL- 73 +K SK D F+ L I Q+K QDPT+P ++ V+Q+A S +E+ +++ L+ + Sbjct: 30 AKEDSKALTDTDVFMTLYIEQLKAQDPTDPQDTNKMVSQIAEMSSLEELSTISTQLESMT 89 Query: 74 --LKSNNLAQASSYIGKNI 90 L S+ AS+ +G+ I Sbjct: 90 SALTSSQAISASTLVGQKI 108 >gi|207092211|ref|ZP_03239998.1| flagellar basal body rod modification protein [Helicobacter pylori HPKX_438_AG0C1] Length = 311 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 3/58 (5%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77 L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E + T+QE+ +KSN Sbjct: 28 LDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEVASAMKSN 85 >gi|84514660|ref|ZP_01002024.1| Possible FlgD protein [Loktanella vestfoldensis SKA53] gi|84511711|gb|EAQ08164.1| Possible FlgD protein [Loktanella vestfoldensis SKA53] Length = 183 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 38/60 (63%) Query: 31 LLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNI 90 +L Q+K+QDP P+++++ QLA FS +EQ+V N L+ L ++ +S++GK + Sbjct: 1 MLTAQMKNQDPLNPVESADFATQLATFSGVEQAVLTNDLLRGLSLQIGVSGLASWVGKEV 60 >gi|291276998|ref|YP_003516770.1| flagellar-hook assembly protein FlgD [Helicobacter mustelae 12198] gi|290964192|emb|CBG40038.1| Putative flagellar-hook assembly protein, FlgD [Helicobacter mustelae 12198] Length = 279 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 34/51 (66%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73 L +DAF+KL + Q+K+QDPT PM+ + + Q A +Q+E + T++E+ Sbjct: 29 LDKDAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMKEV 79 >gi|317014316|gb|ADU81752.1| flagellar basal body rod modification protein [Helicobacter pylori Gambia94/24] Length = 301 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 3/58 (5%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77 L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E + T+QE+ +KSN Sbjct: 28 LDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEVASAMKSN 85 >gi|254779510|ref|YP_003057616.1| flagellar basal body rod modification protein [Helicobacter pylori B38] gi|254001422|emb|CAX29417.1| Flagellar hook assembly protein FlgD [Helicobacter pylori B38] Length = 306 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 3/58 (5%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77 L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E + T+QE+ +KSN Sbjct: 28 LDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEVASAMKSN 85 >gi|163744353|ref|ZP_02151713.1| Flagellar hook capping protein [Oceanibulbus indolifex HEL-45] gi|161381171|gb|EDQ05580.1| Flagellar hook capping protein [Oceanibulbus indolifex HEL-45] Length = 222 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 36/48 (75%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73 ++FL LL QI +QDP P+ +++ V+QLA +Q+EQS+ N++L+++ Sbjct: 30 NSFLTLLTAQISNQDPLNPVDSTQFVSQLAQLTQVEQSIATNASLEQI 77 >gi|114046837|ref|YP_737387.1| flagellar basal body rod modification protein [Shewanella sp. MR-7] gi|113888279|gb|ABI42330.1| flagellar hook capping protein [Shewanella sp. MR-7] Length = 256 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 4/85 (4%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 P+Q ++KS++ L Q+ F LL Q+ QDP +P+ + +AQ+A FS ++ ++N Sbjct: 44 PSQSAVPEAKSQQ-LTQEDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGISKLND 102 Query: 69 ---TLQELLKSNNLAQASSYIGKNI 90 L ++ S+ QAS +G+ + Sbjct: 103 EIVNLNSVMTSSQALQASGLVGRKV 127 >gi|208434812|ref|YP_002266478.1| hook assembly protein, flagella [Helicobacter pylori G27] gi|208432741|gb|ACI27612.1| hook assembly protein, flagella [Helicobacter pylori G27] Length = 316 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 3/58 (5%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77 L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E + T+QE+ +KSN Sbjct: 28 LDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEVASAMKSN 85 >gi|15645523|ref|NP_207699.1| flagellar basal body rod modification protein [Helicobacter pylori 26695] gi|2314043|gb|AAD07953.1| hook assembly protein, flagella (flgD) [Helicobacter pylori 26695] Length = 301 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 3/58 (5%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77 L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E + T+QE+ +KSN Sbjct: 28 LDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEVASAMKSN 85 >gi|308183060|ref|YP_003927187.1| flagellar basal body rod modification protein [Helicobacter pylori PeCan4] gi|308065245|gb|ADO07137.1| flagellar basal body rod modification protein [Helicobacter pylori PeCan4] Length = 306 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 3/58 (5%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77 L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E + T+QE+ +KSN Sbjct: 28 LDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEVASAMKSN 85 >gi|295096226|emb|CBK85316.1| Flagellar hook capping protein [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 236 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E QLA S + ++N+TL + + ++ Q Sbjct: 36 QSSFLTLLVAQLKNQDPTNPMQNNELTTQLAQISTVSGIEKLNTTLGSVSGQIDNSQSLQ 95 Query: 82 ASSYIGKNI 90 A++ IG + Sbjct: 96 AANLIGHGV 104 >gi|33596139|ref|NP_883782.1| flagellar basal body rod modification protein [Bordetella parapertussis 12822] gi|33573142|emb|CAE36789.1| basal-body rod modification protein FlgD [Bordetella parapertussis] Length = 234 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ--- 81 QD FL LL+TQ+++QDP PM+ +E +QLA S +E + +T+ + +++Q Sbjct: 28 QDQFLTLLVTQLRNQDPLNPMENAELTSQLAQISTVEGINNLKNTMLAISGQIDVSQSMD 87 Query: 82 ASSYIGKNI 90 A S IGK + Sbjct: 88 AVSMIGKGV 96 >gi|317009563|gb|ADU80143.1| flagellar basal body rod modification protein [Helicobacter pylori India7] Length = 306 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 3/58 (5%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77 L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E + T+QE+ +KSN Sbjct: 28 LDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEVASAMKSN 85 >gi|217032454|ref|ZP_03437947.1| hypothetical protein HPB128_175g15 [Helicobacter pylori B128] gi|298736141|ref|YP_003728666.1| Flagellar hook capping protein FlgD [Helicobacter pylori B8] gi|216945862|gb|EEC24482.1| hypothetical protein HPB128_175g15 [Helicobacter pylori B128] gi|298355330|emb|CBI66202.1| Flagellar hook capping protein FlgD [Helicobacter pylori B8] Length = 341 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 3/58 (5%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77 L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E + T+QE+ +KSN Sbjct: 28 LDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEVASAMKSN 85 >gi|322378867|ref|ZP_08053284.1| flagellar basal body rod modification protein [Helicobacter suis HS1] gi|322380409|ref|ZP_08054615.1| flagellar basal body rod modification protein [Helicobacter suis HS5] gi|321147199|gb|EFX41893.1| flagellar basal body rod modification protein [Helicobacter suis HS5] gi|321148677|gb|EFX43160.1| flagellar basal body rod modification protein [Helicobacter suis HS1] Length = 446 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 34/51 (66%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73 L +DAF+KL + Q+K+QDPT PM+ + ++Q A SQ+E + ++E+ Sbjct: 40 LNKDAFMKLFLEQLKNQDPTAPMETDKIISQTAQLSQVEMQEENKKAMKEV 90 >gi|33601540|ref|NP_889100.1| flagellar basal body rod modification protein [Bordetella bronchiseptica RB50] gi|33575976|emb|CAE33055.1| basal-body rod modification protein FlgD [Bordetella bronchiseptica RB50] Length = 234 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ--- 81 QD FL LL+TQ+++QDP PM+ +E +QLA S +E + +T+ + +++Q Sbjct: 28 QDQFLTLLVTQLRNQDPLNPMENAELTSQLAQISTVEGINNLKNTMLAISGQIDVSQSMD 87 Query: 82 ASSYIGKNI 90 A S IGK + Sbjct: 88 AVSMIGKGV 96 >gi|238028850|ref|YP_002913081.1| flagellar basal body rod modification protein [Burkholderia glumae BGR1] gi|237878044|gb|ACR30377.1| Flagellar hook capping protein [Burkholderia glumae BGR1] Length = 258 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+NS+L L + + Q Sbjct: 38 QQTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNSSLSSLSSQITAGQQTQ 97 Query: 82 ASSYIGKNI 90 A+ IG N+ Sbjct: 98 AALLIGSNV 106 >gi|33592478|ref|NP_880122.1| flagellar basal body rod modification protein [Bordetella pertussis Tohama I] gi|33572124|emb|CAE41666.1| basal-body rod modification protein FlgD [Bordetella pertussis Tohama I] gi|332381895|gb|AEE66742.1| flagellar basal body rod modification protein [Bordetella pertussis CS] Length = 234 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ--- 81 QD FL LL+TQ+++QDP PM+ +E +QLA S +E + +T+ + +++Q Sbjct: 28 QDQFLTLLVTQLRNQDPLNPMENAELTSQLAQISTVEGINNLKNTMLAISGQIDVSQSMD 87 Query: 82 ASSYIGKNI 90 A S IGK + Sbjct: 88 AVSMIGKGV 96 >gi|90422389|ref|YP_530759.1| flagellar hook capping protein [Rhodopseudomonas palustris BisB18] gi|90104403|gb|ABD86440.1| flagellar hook capping protein [Rhodopseudomonas palustris BisB18] Length = 218 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 21/67 (31%), Positives = 41/67 (61%), Gaps = 3/67 (4%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN---LAQASS 84 FL LL+T++++Q+P +P ++ V+Q+ ++ EQ +N+ L L S N +++ Sbjct: 29 FLTLLVTELQNQNPLDPTDTTDFVSQMTSYANFEQQQTLNTNLSSLATSFNSLLTLNSTN 88 Query: 85 YIGKNIT 91 YIG+ +T Sbjct: 89 YIGQTVT 95 >gi|221069323|ref|ZP_03545428.1| flagellar hook capping protein [Comamonas testosteroni KF-1] gi|220714346|gb|EED69714.1| flagellar hook capping protein [Comamonas testosteroni KF-1] Length = 220 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 QD FLKLL+ Q+ +QDP PM +E +Q+A + + Q+N T+ + + + Q Sbjct: 30 QDRFLKLLVAQLNNQDPMNPMDNAEMTSQMAQINTVTGIQQLNQTMASMSSQFSAMQVLQ 89 Query: 82 ASSYIGKNI 90 +S IG+ + Sbjct: 90 GTSMIGRTV 98 >gi|317177696|dbj|BAJ55485.1| flagellar basal body rod modification protein [Helicobacter pylori F16] Length = 311 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 3/58 (5%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77 L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E + T+QE+ +KSN Sbjct: 28 LDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEVASAMKSN 85 >gi|307637596|gb|ADN80046.1| Flagellar basal-body rod modification protein [Helicobacter pylori 908] gi|325996189|gb|ADZ51594.1| Flagellar basal-body rod modification protein [Helicobacter pylori 2018] gi|325997785|gb|ADZ49993.1| Flagellar basal-body rod modification protein [Helicobacter pylori 2017] Length = 325 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 3/58 (5%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77 L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E + T+QE+ +KSN Sbjct: 28 LDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEVASAMKSN 85 >gi|260779348|ref|ZP_05888240.1| flagellar basal-body rod modification protein FlgD [Vibrio coralliilyticus ATCC BAA-450] gi|260605512|gb|EEX31807.1| flagellar basal-body rod modification protein FlgD [Vibrio coralliilyticus ATCC BAA-450] Length = 226 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 33/47 (70%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 ++ F+ L++ QI++QDP P+ +E V+QLA FSQ++ + M S +Q Sbjct: 38 ENEFISLMVAQIQNQDPLNPLDGTEYVSQLAQFSQVQSTENMASMMQ 84 >gi|297380104|gb|ADI34991.1| hook assembly protein, flagella [Helicobacter pylori v225d] Length = 316 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 3/58 (5%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77 L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E + T+QE+ +KSN Sbjct: 28 LDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEVASAMKSN 85 >gi|317012716|gb|ADU83324.1| flagellar basal body rod modification protein [Helicobacter pylori Lithuania75] Length = 316 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 3/58 (5%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77 L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E + T+QE+ +KSN Sbjct: 28 LDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEVASAMKSN 85 >gi|317182207|dbj|BAJ59991.1| flagellar basal body rod modification protein [Helicobacter pylori F57] Length = 321 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 3/58 (5%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77 L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E + T+QE+ +KSN Sbjct: 28 LDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEVASAMKSN 85 >gi|217034409|ref|ZP_03439823.1| hypothetical protein HP9810_884g14 [Helicobacter pylori 98-10] gi|216943140|gb|EEC22612.1| hypothetical protein HP9810_884g14 [Helicobacter pylori 98-10] Length = 324 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 3/58 (5%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77 L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E + T+QE+ +KSN Sbjct: 28 LDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEVANAMKSN 85 >gi|168186124|ref|ZP_02620759.1| flagellar hook assembly protein FlgD [Clostridium botulinum C str. Eklund] gi|169295774|gb|EDS77907.1| flagellar hook assembly protein FlgD [Clostridium botulinum C str. Eklund] Length = 274 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 7/68 (10%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82 + ++AFLK+L ++ +QDP +++ ++QLA FS +EQ +NST+ + A Sbjct: 64 MDKNAFLKILTAELTNQDPMNAKDSTQYISQLAQFSSLEQMANLNSTM-------SFNSA 116 Query: 83 SSYIGKNI 90 S +GK + Sbjct: 117 GSMVGKTV 124 >gi|108563314|ref|YP_627630.1| flagellar basal body rod modification protein [Helicobacter pylori HPAG1] gi|107837087|gb|ABF84956.1| hook assembly protein, flagella [Helicobacter pylori HPAG1] Length = 327 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 3/58 (5%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77 L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E + T+QE+ +KSN Sbjct: 28 LDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEVASAMKSN 85 >gi|315586852|gb|ADU41233.1| hook assembly protein [Helicobacter pylori 35A] Length = 316 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 3/58 (5%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77 L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E + T+QE+ +KSN Sbjct: 28 LDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEVASAMKSN 85 >gi|332673745|gb|AEE70562.1| hook assembly protein [Helicobacter pylori 83] Length = 319 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 3/58 (5%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77 L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E + T+QE+ +KSN Sbjct: 28 LDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEVASAMKSN 85 >gi|226939375|ref|YP_002794448.1| flagellar hook capping protein [Laribacter hongkongensis HLHK9] gi|226714301|gb|ACO73439.1| flagellar hook capping protein [Laribacter hongkongensis HLHK9] Length = 239 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 10/81 (12%) Query: 3 INTEVNPT---QQEFS-------KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVA 52 + T VNPT + F+ K+KS+ QD FLKLLITQ++ QDP P+ + + Sbjct: 1 MTTAVNPTSSTEDPFAGINGTNTKTKSEADEIQDRFLKLLITQLQTQDPLNPLDNYQMTS 60 Query: 53 QLAVFSQMEQSVQMNSTLQEL 73 Q+A S ++ ++NS++ L Sbjct: 61 QMAQISSVQGIEKLNSSVSAL 81 >gi|153953784|ref|YP_001394549.1| hypothetical protein CKL_1159 [Clostridium kluyveri DSM 555] gi|219854400|ref|YP_002471522.1| hypothetical protein CKR_1057 [Clostridium kluyveri NBRC 12016] gi|146346665|gb|EDK33201.1| FlgD [Clostridium kluyveri DSM 555] gi|219568124|dbj|BAH06108.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 265 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 16/114 (14%) Query: 20 KKTLGQDA----FLKLLITQIKHQDPTEPMK--ASEQVAQLAVFSQMEQSVQMNSTLQEL 73 KK G D FLK+L ++++QDPT+ ++E ++QLA FS ++Q + +N+T Sbjct: 62 KKNTGYDMDLNMFLKILCAELENQDPTDSSSQGSTEYISQLAQFSALQQMMNLNNT---- 117 Query: 74 LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGI 127 N + A+S + K +T +D G N I G+ D+ E+ + TGI Sbjct: 118 ---NKVTTANSLVNKYVTLSDRDSEG--NYITGKVVGVVK-DGDDVELKLITGI 165 >gi|117919771|ref|YP_868963.1| flagellar basal body rod modification protein [Shewanella sp. ANA-3] gi|117612103|gb|ABK47557.1| basal-body rod modification protein FlgD [Shewanella sp. ANA-3] Length = 259 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 34/126 (26%), Positives = 62/126 (49%), Gaps = 10/126 (7%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 PT ++KS++ L Q+ F LL Q+ QDP +P+ + +AQ+A FS ++ ++N Sbjct: 47 PTSSAVPEAKSQQ-LTQEDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGISKLND 105 Query: 69 ---TLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITT 125 L ++ S+ QAS +G+ + + I S GL + + +IP+ Sbjct: 106 QIVNLNSVMTSSQALQASGLVGRKVL-----LPTDTGYISAESPGLNGVISTSEKIPVIN 160 Query: 126 GIRISN 131 +RI + Sbjct: 161 -VRIED 165 >gi|210135098|ref|YP_002301537.1| flagellar basal body rod modification protein [Helicobacter pylori P12] gi|210133066|gb|ACJ08057.1| flagellar hook assembly protein [Helicobacter pylori P12] Length = 339 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 3/58 (5%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77 L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E + T+QE+ +KSN Sbjct: 28 LDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEVASAMKSN 85 >gi|269960115|ref|ZP_06174491.1| Flagellar basal-body rod modification protein flgD [Vibrio harveyi 1DA3] gi|269835086|gb|EEZ89169.1| Flagellar basal-body rod modification protein flgD [Vibrio harveyi 1DA3] Length = 228 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 33/47 (70%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 Q+ F+ L++ QI++QDP P+ +E V+QLA FSQ++ + M+ +Q Sbjct: 40 QNEFISLMVAQIQNQDPLNPLDGTEYVSQLAQFSQVQSTENMSMLMQ 86 >gi|119469949|ref|ZP_01612754.1| flagellar basal body rod modification protein D [Alteromonadales bacterium TW-7] gi|119446659|gb|EAW27932.1| flagellar basal body rod modification protein D [Alteromonadales bacterium TW-7] Length = 226 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 3/69 (4%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNL 79 L Q+ F LL Q+ QDP++P + +AQ+ F+ E +NS + L + SN+ Sbjct: 32 LTQEDFFSLLTQQLSFQDPSKPADNDQMIAQMTNFTMAEGISNLNSNFESLAASMTSNSA 91 Query: 80 AQASSYIGK 88 QAS+ +GK Sbjct: 92 LQASTLVGK 100 >gi|161503736|ref|YP_001570848.1| flagellar basal body rod modification protein [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865083|gb|ABX21706.1| hypothetical protein SARI_01821 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 232 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT P++ +E QLA S + ++N+TL + + ++ Q Sbjct: 33 QSSFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGIEKLNTTLGAISGQIDNSQSLQ 92 Query: 82 ASSYIGKNI 90 A++ IG + Sbjct: 93 ATTLIGHGV 101 >gi|156976140|ref|YP_001447046.1| flagellar basal body rod modification protein [Vibrio harveyi ATCC BAA-1116] gi|156527734|gb|ABU72819.1| hypothetical protein VIBHAR_04911 [Vibrio harveyi ATCC BAA-1116] Length = 228 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 33/47 (70%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 Q+ F+ L++ QI++QDP P+ +E V+QLA FSQ++ + M+ +Q Sbjct: 40 QNEFISLMVAQIQNQDPLNPLDGTEYVSQLAQFSQVQSTENMSMLMQ 86 >gi|153831740|ref|ZP_01984407.1| flagellar basal body rod modification protein [Vibrio harveyi HY01] gi|148872250|gb|EDL71067.1| flagellar basal body rod modification protein [Vibrio harveyi HY01] Length = 228 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 33/47 (70%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 Q+ F+ L++ QI++QDP P+ +E V+QLA FSQ++ + M+ +Q Sbjct: 40 QNEFISLMVAQIQNQDPLNPLDGTEYVSQLAQFSQVQSTENMSMLMQ 86 >gi|238793997|ref|ZP_04637615.1| Flagellar hook capping protein [Yersinia intermedia ATCC 29909] gi|238726629|gb|EEQ18165.1| Flagellar hook capping protein [Yersinia intermedia ATCC 29909] Length = 230 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 33/49 (67%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73 Q++FL LL+ Q+K+QDPT PM+ +E QLA + + ++N+TL + Sbjct: 34 QNSFLTLLVAQLKNQDPTNPMQNNELTTQLAQINTVSGIEKLNTTLGSI 82 >gi|253681624|ref|ZP_04862421.1| flagellar hook assembly protein FlgD [Clostridium botulinum D str. 1873] gi|253561336|gb|EES90788.1| flagellar hook assembly protein FlgD [Clostridium botulinum D str. 1873] Length = 272 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 41/68 (60%), Gaps = 7/68 (10%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82 + ++AFLK+L ++ +QDP +++ ++QLA FS +EQ +NST+ + A Sbjct: 62 MDKNAFLKILTAELTNQDPMNAKDSTQYISQLAQFSSLEQMANLNSTM-------SFNSA 114 Query: 83 SSYIGKNI 90 S+ +GK + Sbjct: 115 SNMVGKTV 122 >gi|332533176|ref|ZP_08409045.1| flagellar basal-body rod modification protein FlgD [Pseudoalteromonas haloplanktis ANT/505] gi|332037458|gb|EGI73912.1| flagellar basal-body rod modification protein FlgD [Pseudoalteromonas haloplanktis ANT/505] Length = 226 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 3/81 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 QQ + L Q+ F LL Q+ +QDP+ P + +AQ+ F+ + +N+ Sbjct: 20 QQVATSDNESDALTQEDFFSLLTQQLSYQDPSNPADNDQMIAQMTSFTMAQGITDLNTNF 79 Query: 71 QEL---LKSNNLAQASSYIGK 88 + L + SN+ QAS+ +GK Sbjct: 80 ESLASSMTSNSALQASTLVGK 100 >gi|238911004|ref|ZP_04654841.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 232 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 3/90 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASE---QVAQLAVFSQM 60 NT V T S + S Q +FL LL+ Q+K+QDPT P++ +E Q+AQ++ S + Sbjct: 12 NTGVKTTTGSGSMTGSNAADLQSSFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGI 71 Query: 61 EQSVQMNSTLQELLKSNNLAQASSYIGKNI 90 E+ M + + ++ QA++ IG + Sbjct: 72 EKLNTMLGAISGQIDNSQSLQATTLIGHGV 101 >gi|264676569|ref|YP_003276475.1| flagellar hook capping protein [Comamonas testosteroni CNB-2] gi|299531287|ref|ZP_07044697.1| flagellar hook capping protein [Comamonas testosteroni S44] gi|262207081|gb|ACY31179.1| flagellar hook capping protein [Comamonas testosteroni CNB-2] gi|298720694|gb|EFI61641.1| flagellar hook capping protein [Comamonas testosteroni S44] Length = 220 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 QD FLKLL+ Q+ +QDP PM +E +Q+A + + Q+N T+ + + + Q Sbjct: 30 QDRFLKLLVAQLNNQDPMNPMDNAEMTSQMAQINTVTGIQQLNQTMASMSSQFTAMQVLQ 89 Query: 82 ASSYIGKNI 90 +S IG+ + Sbjct: 90 GTSMIGRTV 98 >gi|308184692|ref|YP_003928825.1| flagellar basal body rod modification protein [Helicobacter pylori SJM180] gi|308060612|gb|ADO02508.1| flagellar basal body rod modification protein [Helicobacter pylori SJM180] Length = 346 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 3/58 (5%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77 L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E + T+QE+ +KSN Sbjct: 28 LDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEVASAMKSN 85 >gi|317178741|dbj|BAJ56529.1| flagellar basal body rod modification protein [Helicobacter pylori F30] Length = 329 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 3/58 (5%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77 L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E + T+QE+ +KSN Sbjct: 28 LDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEVASAMKSN 85 >gi|261838283|gb|ACX98049.1| hook assembly protein [Helicobacter pylori 51] Length = 334 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 3/58 (5%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77 L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E + T+QE+ +KSN Sbjct: 28 LDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEVASAMKSN 85 >gi|312884835|ref|ZP_07744527.1| flagellar basal body rod modification protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309367487|gb|EFP95047.1| flagellar basal body rod modification protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 223 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 42/69 (60%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE---LLKSNNLAQ 81 Q+ F+ L++ QI++QDP P+ +E V+QLA FSQ++ + M + Q LL + + Sbjct: 35 QNEFISLMVAQIQNQDPLNPLDGTEYVSQLAQFSQVQSTENMTTMTQNSMVLLDNLQVLS 94 Query: 82 ASSYIGKNI 90 ++ +GK + Sbjct: 95 TANLVGKTV 103 >gi|238785498|ref|ZP_04629481.1| Flagellar hook capping protein [Yersinia bercovieri ATCC 43970] gi|238713600|gb|EEQ05629.1| Flagellar hook capping protein [Yersinia bercovieri ATCC 43970] Length = 230 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 33/49 (67%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73 Q++FL LL+ Q+K+QDPT PM+ +E QLA + + ++N+TL + Sbjct: 34 QNSFLTLLVAQLKNQDPTNPMQNNELTTQLAQINTVSGIEKLNTTLGSI 82 >gi|212709491|ref|ZP_03317619.1| hypothetical protein PROVALCAL_00533 [Providencia alcalifaciens DSM 30120] gi|212687829|gb|EEB47357.1| hypothetical protein PROVALCAL_00533 [Providencia alcalifaciens DSM 30120] Length = 288 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 42/69 (60%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASE---QVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ 81 +D FLK+++TQ+++QDPT+PM ++ Q+AQ+A M + + + + + S Q Sbjct: 35 RDTFLKMIVTQMQNQDPTKPMDNADLTGQLAQIATLESMNKLSDSVTGISQQIGSGQSLQ 94 Query: 82 ASSYIGKNI 90 A+ +GK + Sbjct: 95 ATQLVGKGV 103 >gi|317180243|dbj|BAJ58029.1| flagellar basal body rod modification protein [Helicobacter pylori F32] Length = 329 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 3/58 (5%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77 L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E + T+QE+ +KSN Sbjct: 28 LDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEVASAMKSN 85 >gi|90577343|ref|ZP_01233154.1| flagellar basal body rod modification protein [Vibrio angustum S14] gi|90440429|gb|EAS65609.1| flagellar basal body rod modification protein [Vibrio angustum S14] Length = 225 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 31/47 (65%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 ++ F+ L++ QI++QDP P+ +E V QLA FSQ+E + M +Q Sbjct: 37 KNEFINLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVESTENMAKLMQ 83 >gi|330447902|ref|ZP_08311550.1| flagellar hook capping family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492093|dbj|GAA06047.1| flagellar hook capping family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 225 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 31/47 (65%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 ++ F+ L++ QI++QDP P+ +E V QLA FSQ+E + M +Q Sbjct: 37 KNEFINLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVESTENMAKLMQ 83 >gi|121997320|ref|YP_001002107.1| flagellar hook capping protein [Halorhodospira halophila SL1] gi|121588725|gb|ABM61305.1| flagellar hook capping protein [Halorhodospira halophila SL1] Length = 293 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 20/73 (27%), Positives = 44/73 (60%), Gaps = 3/73 (4%) Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77 +++G + FL+L++ Q+++QDPT+P + + Q+A F+ Q+ S +E ++S+ Sbjct: 95 QSIGHEDFLELMMVQLQNQDPTDPQDTEQMMGQIAQFTTASGIEQLQSDFREFFEHMRSD 154 Query: 78 NLAQASSYIGKNI 90 +AS +G+ + Sbjct: 155 QSLRASQLVGREV 167 >gi|238799106|ref|ZP_04642562.1| Flagellar hook capping protein [Yersinia mollaretii ATCC 43969] gi|238717053|gb|EEQ08913.1| Flagellar hook capping protein [Yersinia mollaretii ATCC 43969] Length = 230 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 33/49 (67%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73 Q++FL LL+ Q+K+QDPT PM+ +E QLA + + ++N+TL + Sbjct: 34 QNSFLTLLVAQLKNQDPTNPMQNNELTTQLAQINTVSGIEKLNTTLGSI 82 >gi|89072316|ref|ZP_01158895.1| flagellar basal body rod modification protein [Photobacterium sp. SKA34] gi|89051848|gb|EAR57300.1| flagellar basal body rod modification protein [Photobacterium sp. SKA34] Length = 226 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 31/47 (65%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 ++ F+ L++ QI++QDP P+ +E V QLA FSQ+E + M +Q Sbjct: 37 KNEFINLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVESTENMAKLMQ 83 >gi|188592116|ref|YP_001796714.1| flagellar basal body rod modification protein [Cupriavidus taiwanensis LMG 19424] gi|170938490|emb|CAP63477.1| FlgD: Basal-body rod modification protein [Cupriavidus taiwanensis LMG 19424] Length = 221 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 4/79 (5%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74 S S S L Q+ FL +L+TQ+ +QDP PM ++ +QLA S + MN+TL +LL Sbjct: 20 SGSASASEL-QNNFLTMLVTQMNNQDPLNPMDNAQLTSQLAQISTVSGMQTMNATLSQLL 78 Query: 75 KSNNLAQA---SSYIGKNI 90 + ++A ++ IG+ + Sbjct: 79 GQVSASRAMDSAALIGRTV 97 >gi|323492339|ref|ZP_08097492.1| flagellar basal body rod modification protein [Vibrio brasiliensis LMG 20546] gi|323313386|gb|EGA66497.1| flagellar basal body rod modification protein [Vibrio brasiliensis LMG 20546] Length = 226 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 34/47 (72%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 ++ F+ L++ QI++QDP P+ +E V+QLA FSQ++ + M++ +Q Sbjct: 38 ENEFISLMVAQIQNQDPLNPLDGTEYVSQLAQFSQVQSTENMSTMMQ 84 >gi|15611910|ref|NP_223561.1| flagellar basal body rod modification protein [Helicobacter pylori J99] gi|4155413|gb|AAD06421.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99] Length = 363 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 3/58 (5%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77 L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E + T+QE+ +KSN Sbjct: 28 LDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEVASAMKSN 85 >gi|238764391|ref|ZP_04625341.1| Flagellar hook capping protein [Yersinia kristensenii ATCC 33638] gi|238697417|gb|EEP90184.1| Flagellar hook capping protein [Yersinia kristensenii ATCC 33638] Length = 228 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 33/49 (67%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73 Q++FL LL+ Q+K+QDPT PM+ +E QLA + + ++N+TL + Sbjct: 32 QNSFLTLLVAQLKNQDPTNPMQNNELTTQLAQINTVSGIEKLNTTLGSI 80 >gi|163750571|ref|ZP_02157809.1| flagellar basal body rod modification protein [Shewanella benthica KT99] gi|161329726|gb|EDQ00715.1| flagellar basal body rod modification protein [Shewanella benthica KT99] Length = 268 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 3/75 (4%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS---TLQELLK 75 S + L QD F LL Q+ QDP +P+ + +AQ+A FS ++ ++N L ++ Sbjct: 65 SSQGLSQDDFFSLLSQQLSMQDPFKPVDNDQMIAQMAAFSTVDGISKLNDEIINLNAVMT 124 Query: 76 SNNLAQASSYIGKNI 90 S+ QAS +G+ + Sbjct: 125 SSQALQASGLVGQKV 139 >gi|238796903|ref|ZP_04640407.1| Flagellar hook capping protein [Yersinia mollaretii ATCC 43969] gi|238719163|gb|EEQ10975.1| Flagellar hook capping protein [Yersinia mollaretii ATCC 43969] Length = 237 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 3/68 (4%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ---ELLKSNNLAQA 82 ++F+ LL+ Q+++QDPT PM ++ +QLA FS Q+NST+ L+ S A Sbjct: 29 NSFMTLLVAQMQNQDPTNPMDNNQLTSQLAQFSTASGVQQLNSTVMAVGSLVTSMQQMNA 88 Query: 83 SSYIGKNI 90 + ++G+ + Sbjct: 89 ADWVGRQV 96 >gi|23011250|ref|ZP_00051667.1| COG1843: Flagellar hook capping protein [Magnetospirillum magnetotacticum MS-1] Length = 223 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 46/72 (63%), Gaps = 4/72 (5%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNLAQASS 84 FL LL TQ+K+Q+P +P+ ++ QL F+ +EQ ++ N++L +L K++ + AS Sbjct: 32 FLTLLTTQLKNQNPLDPLDTNQFTQQLVQFAGVEQQLKTNASLDTILTNSKASAASSASG 91 Query: 85 YIGKNITNADGS 96 IG+ + ADG+ Sbjct: 92 LIGRTVV-ADGA 102 >gi|261839697|gb|ACX99462.1| flagellar basal body rod modification protein [Helicobacter pylori 52] Length = 354 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 3/58 (5%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77 L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E + T+QE+ +KSN Sbjct: 28 LDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEVASAMKSN 85 >gi|224825163|ref|ZP_03698269.1| flagellar hook capping protein [Lutiella nitroferrum 2002] gi|224602834|gb|EEG09011.1| flagellar hook capping protein [Lutiella nitroferrum 2002] Length = 230 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 3/67 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ--- 81 Q+ FL LL TQ+K QDP PM+ +E +Q+A SQ+ ++ ++ LL+S Q Sbjct: 34 QNRFLTLLTTQLKSQDPLNPMENNEITSQMAQISQVTGLENLSKSINSLLQSQYGTQSLL 93 Query: 82 ASSYIGK 88 A+S +GK Sbjct: 94 AASLVGK 100 >gi|24374759|ref|NP_718802.1| flagellar basal body rod modification protein [Shewanella oneidensis MR-1] gi|24349425|gb|AAN56246.1|AE015762_3 basal-body rod modification protein FlgD [Shewanella oneidensis MR-1] Length = 253 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 34/126 (26%), Positives = 62/126 (49%), Gaps = 10/126 (7%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 P+ ++KS++ L Q+ F LL Q+ QDP +P+ + +AQ+A FS ++ ++N Sbjct: 41 PSNSAVPEAKSQQ-LTQEDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGISKLND 99 Query: 69 ---TLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITT 125 L ++ S+ QAS +G+ + + I S GL + + +IP+ Sbjct: 100 QIVNLNSVMTSSQALQASGLVGRKVL-----LPTDTGYISAESPGLNGVISTSEKIPVIN 154 Query: 126 GIRISN 131 IRI + Sbjct: 155 -IRIED 159 >gi|238758111|ref|ZP_04619291.1| Flagellar hook capping protein [Yersinia aldovae ATCC 35236] gi|238703649|gb|EEP96186.1| Flagellar hook capping protein [Yersinia aldovae ATCC 35236] Length = 230 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 33/49 (67%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73 Q++FL LL+ Q+K+QDPT PM+ +E QLA + + ++N+TL + Sbjct: 34 QNSFLTLLVAQLKNQDPTNPMQNNELTTQLAQINTVSGIEKLNTTLGSI 82 >gi|213615927|ref|ZP_03371753.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 97 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 38/67 (56%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 NT V T S + S Q +FL LL+ Q+K+QDPT P++ +E QLA S + Sbjct: 12 NTGVKTTTGSGSMTGSNAADLQSSFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGI 71 Query: 64 VQMNSTL 70 ++N+TL Sbjct: 72 EKLNTTL 78 >gi|317047690|ref|YP_004115338.1| flagellar hook capping protein [Pantoea sp. At-9b] gi|316949307|gb|ADU68782.1| flagellar hook capping protein [Pantoea sp. At-9b] Length = 224 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 46/76 (60%), Gaps = 6/76 (7%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL----QELLKSNNLA 80 Q+ FL +L+TQ+++QDPT PM S+ QLA + + ++N+TL ++ S NL Sbjct: 32 QNQFLTMLVTQLQNQDPTNPMDNSQLTTQLAQINTLSGIEKLNTTLGSISGQISTSQNL- 90 Query: 81 QASSYIGKNITNADGS 96 Q+++ IG + DGS Sbjct: 91 QSTTLIGHGVM-VDGS 105 >gi|149189835|ref|ZP_01868115.1| flagellar basal body rod modification protein D [Vibrio shilonii AK1] gi|148836321|gb|EDL53278.1| flagellar basal body rod modification protein D [Vibrio shilonii AK1] Length = 225 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 33/47 (70%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 Q+ F+ L++ QI++QDP P+ +E V+QLA FSQ++ + M+ +Q Sbjct: 37 QNEFITLMVAQIQNQDPLNPLDGTEYVSQLAQFSQVQSTENMSMLMQ 83 >gi|224436454|ref|ZP_03657468.1| flagellar basal body rod modification protein [Helicobacter cinaedi CCUG 18818] gi|313142966|ref|ZP_07805159.1| flagellar basal body rod modification protein [Helicobacter cinaedi CCUG 18818] gi|313127997|gb|EFR45614.1| flagellar basal body rod modification protein [Helicobacter cinaedi CCUG 18818] Length = 273 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 37/62 (59%) Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 +E K ++ L DAF++L + Q+K+QDPT PM+ + + Q A +Q+E Q T+ Sbjct: 17 KEKEKVRNINELDNDAFMRLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEQNKKTMV 76 Query: 72 EL 73 E+ Sbjct: 77 EV 78 >gi|85710163|ref|ZP_01041228.1| Flagellar hook capping protein [Erythrobacter sp. NAP1] gi|85688873|gb|EAQ28877.1| Flagellar hook capping protein [Erythrobacter sp. NAP1] Length = 117 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 33/58 (56%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73 + + +L + FL+L+ Q+ +QDP EP + +AQLA FS +E +TL E+ Sbjct: 27 RESAAASLDSEDFLRLMTAQLANQDPLEPQSNEQMLAQLAQFSNLENGTASRATLDEI 84 >gi|21672603|ref|NP_660670.1| basal-body rod modification protein FlgD [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25008457|sp|Q8K9K7|FLGD_BUCAP RecName: Full=Basal-body rod modification protein flgD gi|21623234|gb|AAM67881.1| basal-body rod modification protein FlgD [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 226 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 44/70 (62%), Gaps = 5/70 (7%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL----QELLKSNNLA 80 Q FL LL+ Q+K+QDPT+P+K SE +QLA + ++NST+ ++ +S N+ Sbjct: 32 QKNFLSLLMAQMKNQDPTDPIKNSELTSQLAQINTATGIERLNSTVGIFSNKINQSQNI- 90 Query: 81 QASSYIGKNI 90 Q SS IG ++ Sbjct: 91 QVSSLIGHHV 100 >gi|308186392|ref|YP_003930523.1| Basal-body rod modification protein flgD [Pantoea vagans C9-1] gi|308056902|gb|ADO09074.1| Basal-body rod modification protein flgD [Pantoea vagans C9-1] Length = 224 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 3/74 (4%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDA---FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59 +N +++PT S + QD FL +L+TQ+K+QDPT PM S+ QLA + Sbjct: 7 VNEKLDPTVLSSSSTSGTGNNAQDLQNQFLTMLVTQLKNQDPTNPMDNSQLTTQLAQINT 66 Query: 60 MEQSVQMNSTLQEL 73 + ++N+TL + Sbjct: 67 LSGIEKLNTTLGSI 80 >gi|238788314|ref|ZP_04632108.1| Flagellar hook capping protein [Yersinia frederiksenii ATCC 33641] gi|238723560|gb|EEQ15206.1| Flagellar hook capping protein [Yersinia frederiksenii ATCC 33641] Length = 230 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 33/49 (67%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73 Q++FL LL+ Q+K+QDPT PM+ +E QLA + + ++N+TL + Sbjct: 34 QNSFLTLLVAQLKNQDPTNPMQNNELTTQLAQINTVSGIEKLNTTLGAI 82 >gi|331269320|ref|YP_004395812.1| flagellar hook assembly protein FlgD [Clostridium botulinum BKT015925] gi|329125870|gb|AEB75815.1| flagellar hook assembly protein FlgD [Clostridium botulinum BKT015925] Length = 275 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 7/68 (10%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82 + ++AFLK+L ++ +QDP +++ ++QLA FS +EQ +NST+ + A Sbjct: 65 MDKNAFLKILTAELTNQDPMNAKDSTQYISQLAQFSGLEQMANLNSTM-------SFNSA 117 Query: 83 SSYIGKNI 90 S +GK + Sbjct: 118 GSMVGKTL 125 >gi|296274023|ref|YP_003656654.1| flagellar hook capping protein [Arcobacter nitrofigilis DSM 7299] gi|296098197|gb|ADG94147.1| flagellar hook capping protein [Arcobacter nitrofigilis DSM 7299] Length = 156 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 26/109 (23%), Positives = 63/109 (57%), Gaps = 3/109 (2%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+++ + Q+++++ S L + FLKL++ Q+K QDPT+P + + Q S ++ Sbjct: 5 EVSSVTDANGQQYTQAISNDKLTNEDFLKLMLEQMKQQDPTKPQDSQNMLNQQMQMSSIQ 64 Query: 62 QSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSISGVVNAIQVS 107 ++ M+++++ L + ++L+ A++ I K + + +G++ + VS Sbjct: 65 TNLDMSNSMKALQATFQQSSLSNATNLINKIVDTGEVDDNGILKSYAVS 113 >gi|300722683|ref|YP_003711973.1| flagellar hook assembly initiation protein [Xenorhabdus nematophila ATCC 19061] gi|297629190|emb|CBJ89786.1| flagellar biosynthesis; initiation of hook assembly [Xenorhabdus nematophila ATCC 19061] Length = 233 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 36/58 (62%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82 +D FL LL+ Q+K+QDPT PM+ +E Q+A S ++ ++N TL ++ + QA Sbjct: 34 KDNFLNLLVAQLKNQDPTNPMQNNELTTQIAQISTVQGVEKLNKTLGSIVGQMDHNQA 91 >gi|258625235|ref|ZP_05720147.1| Flagellar basal-body rod modification protein flgD [Vibrio mimicus VM603] gi|258582482|gb|EEW07319.1| Flagellar basal-body rod modification protein flgD [Vibrio mimicus VM603] Length = 227 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 32/47 (68%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 Q+ F+ +++ QI++QDP P+ +E V+QLA FSQ++ M+ +Q Sbjct: 42 QNEFITMMVAQIQNQDPLNPLDGTEYVSQLAQFSQVQSMENMSGLMQ 88 >gi|146293691|ref|YP_001184115.1| flagellar basal body rod modification protein [Shewanella putrefaciens CN-32] gi|145565381|gb|ABP76316.1| flagellar hook capping protein [Shewanella putrefaciens CN-32] gi|319427090|gb|ADV55164.1| flagellar hook capping protein [Shewanella putrefaciens 200] Length = 253 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 4/85 (4%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 PT+ ++KS++ L Q+ F LL Q+ QDP +P+ + +AQ+A FS ++ ++N Sbjct: 41 PTESIVPEAKSQQ-LTQEDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGISKLNK 99 Query: 69 ---TLQELLKSNNLAQASSYIGKNI 90 L ++ S+ QAS +G+ + Sbjct: 100 EIVNLNSVMTSSQALQASGLVGRKV 124 >gi|167770212|ref|ZP_02442265.1| hypothetical protein ANACOL_01555 [Anaerotruncus colihominis DSM 17241] gi|167667534|gb|EDS11664.1| hypothetical protein ANACOL_01555 [Anaerotruncus colihominis DSM 17241] Length = 249 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 7/76 (9%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSY 85 D FL L++ Q+++QD P+ ++ V QLA F+ M Q +QEL + A S Sbjct: 53 DDFLSLMVAQLQNQDFMNPVDDTQYVTQLAQFATMSQ-------MQELAANMKNNYALSL 105 Query: 86 IGKNITNADGSISGVV 101 +G N+T A ++SG + Sbjct: 106 VGTNVTAAKFAVSGAL 121 >gi|116694218|ref|YP_728429.1| flagellar basal body rod modification protein [Ralstonia eutropha H16] gi|113528717|emb|CAJ95064.1| flagellar basal body rod modification protein [Ralstonia eutropha H16] Length = 221 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 1/60 (1%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74 S S S L Q+ FL +L+TQ+ +QDP PM ++ +QLA S + MN+TL +LL Sbjct: 20 SGSASASEL-QNNFLTMLVTQMNNQDPLNPMDNAQLTSQLAQISTVSGMQTMNATLSQLL 78 >gi|32265683|ref|NP_859715.1| flagellar basal body rod modification protein [Helicobacter hepaticus ATCC 51449] gi|32261731|gb|AAP76781.1| flagellar hook assembly protein FlgD [Helicobacter hepaticus ATCC 51449] Length = 273 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 4/72 (5%) Query: 6 EVNPTQQEFSKSKSK----KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 EV + + +K K K L DAF++L + Q+K+QDPT PM+ + + Q A +Q+E Sbjct: 7 EVTGSAAKIAKEKEKVRNINELDNDAFMRLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66 Query: 62 QSVQMNSTLQEL 73 Q T+ E+ Sbjct: 67 MQEQNKKTMVEV 78 >gi|94312668|ref|YP_585877.1| flagellar hook capping protein [Cupriavidus metallidurans CH34] gi|93356520|gb|ABF10608.1| flagellar hook capping protein [Cupriavidus metallidurans CH34] Length = 222 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA-- 82 Q+ FL +L+TQ+ +QDP P+ S+ +QLA S + MN+T+ +LL+ ++A Sbjct: 30 QNQFLTMLVTQMNNQDPLNPLDNSQLTSQLAQISTVSGLQTMNTTMTQLLQQTAASRAMD 89 Query: 83 -SSYIGKNI 90 ++ IGK + Sbjct: 90 SANLIGKTV 98 >gi|319944136|ref|ZP_08018414.1| basal-body rod modification protein FlgD [Lautropia mirabilis ATCC 51599] gi|319742630|gb|EFV95039.1| basal-body rod modification protein FlgD [Lautropia mirabilis ATCC 51599] Length = 256 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 5/87 (5%) Query: 7 VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66 NP + +S + T +D FLKLL+ Q+++QDP PM+ +E +QLA S + + Sbjct: 46 ANPNVNKNDESTADGT--EDRFLKLLVAQMRNQDPMNPMENAEVTSQLAQISTVRGIESL 103 Query: 67 NSTLQELLKS--NNLAQAS-SYIGKNI 90 N ++ S N A AS + IGK + Sbjct: 104 NKSMANFTASAAQNTALASVNMIGKKV 130 >gi|308050025|ref|YP_003913591.1| flagellar hook capping protein [Ferrimonas balearica DSM 9799] gi|307632215|gb|ADN76517.1| flagellar hook capping protein [Ferrimonas balearica DSM 9799] Length = 222 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 18/37 (48%), Positives = 27/37 (72%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 ++ FL L++ QI++QDP P+ +E V QLA FSQ+E Sbjct: 31 KNEFLTLMVAQIQNQDPLNPLDGTEYVTQLAQFSQVE 67 >gi|85060037|ref|YP_455739.1| putative flagellar hook formation protein FlgD [Sodalis glossinidius str. 'morsitans'] gi|84780557|dbj|BAE75334.1| putative flagellar hook formation protein FlgD [Sodalis glossinidius str. 'morsitans'] Length = 138 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 14/96 (14%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASE---QVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ 81 Q+ FL LL+ Q+++QDPT P+ +E Q+AQ+++ S +E +N+ L + S NL Q Sbjct: 32 QNNFLTLLVAQLRNQDPTNPLDNAELTTQLAQISILSSIE---NLNTMLGS-ISSQNL-Q 86 Query: 82 ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVD 117 A++ +G + DGS A+ S G ++ D Sbjct: 87 ATTLVGHGVM-VDGS-----GAVYYSRNGEFSLNAD 116 >gi|1857437|gb|AAC45655.1| FlgD [Proteus mirabilis] Length = 182 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 2/74 (2%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 P+ K S G FL LLITQ+++QDPT PM+ +E +QLA S +E +N Sbjct: 14 PSSYHTKKGGSDDIKGN--FLTLLITQMQNQDPTNPMQNNELTSQLAQISTVEGIETLNK 71 Query: 69 TLQELLKSNNLAQA 82 T+ ++ + +QA Sbjct: 72 TVNTIVGQIDQSQA 85 >gi|160896080|ref|YP_001561662.1| flagellar hook capping protein [Delftia acidovorans SPH-1] gi|160361664|gb|ABX33277.1| flagellar hook capping protein [Delftia acidovorans SPH-1] Length = 220 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 3/79 (3%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL- 73 S S + QD FLKLL+ Q+ +QDP PM ++ +Q+A + + Q+N T++ + Sbjct: 21 SNSTTDPAAAQDRFLKLLVAQLNNQDPMNPMDNAQMTSQMAQINTVTGIQQLNKTMESMA 80 Query: 74 --LKSNNLAQASSYIGKNI 90 + + Q + IG+ + Sbjct: 81 GQFTAMQVLQGTQMIGRTV 99 >gi|118443090|ref|YP_877981.1| flagellar hook assembly protein FlgD [Clostridium novyi NT] gi|118133546|gb|ABK60590.1| flagellar hook assembly protein FlgD [Clostridium novyi NT] Length = 274 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 35/53 (66%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 K + + ++AFLK+L ++ +QDP +++ ++QLA FS +EQ +NST+ Sbjct: 59 KKGQEMDKNAFLKILTAELTNQDPMNAKDSTQYISQLAQFSSLEQMANLNSTM 111 >gi|227356002|ref|ZP_03840394.1| flagellar basal body rod modification protein [Proteus mirabilis ATCC 29906] gi|227163990|gb|EEI48892.1| flagellar basal body rod modification protein [Proteus mirabilis ATCC 29906] Length = 268 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 2/74 (2%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 P+ K S G FL LLITQ+++QDPT PM+ +E +QLA S +E +N Sbjct: 20 PSSYHTKKGGSDDIKGN--FLTLLITQMQNQDPTNPMQNNELTSQLAQISTVEGIETLNK 77 Query: 69 TLQELLKSNNLAQA 82 T+ ++ + +QA Sbjct: 78 TVNTIVGQIDQSQA 91 >gi|119947178|ref|YP_944858.1| flagellar basal body rod modification protein [Psychromonas ingrahamii 37] gi|119865782|gb|ABM05259.1| flagellar basal-body rod modification protein FlgD [Psychromonas ingrahamii 37] Length = 230 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 20/45 (44%), Positives = 30/45 (66%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72 F+ L++ QI++QDP P +E V+QLA FSQ+E + M S +Q Sbjct: 39 FITLMVAQIQNQDPLNPGDGTEYVSQLAQFSQVESAENMVSLMQR 83 >gi|322432990|ref|YP_004210239.1| flagellar hook capping protein [Acidobacterium sp. MP5ACTX9] gi|321165217|gb|ADW70921.1| flagellar hook capping protein [Acidobacterium sp. MP5ACTX9] Length = 162 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 30/43 (69%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 FL LL+ ++++QDPT PM ++ V Q+ +Q++Q + +N TL Sbjct: 54 FLNLLVKELQNQDPTAPMDSTAMVGQMISLNQLDQLISINQTL 96 >gi|261344143|ref|ZP_05971787.1| basal-body rod modification protein FlgD [Providencia rustigianii DSM 4541] gi|282567735|gb|EFB73270.1| basal-body rod modification protein FlgD [Providencia rustigianii DSM 4541] Length = 285 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 41/69 (59%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASE---QVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ 81 +D FL +++TQ+++QDPT+PM ++ Q+AQ+A M + S + + + S Q Sbjct: 35 RDTFLTMIVTQMQNQDPTKPMDNADLTGQLAQIATLESMNKLSDSVSGISQQIGSGQSLQ 94 Query: 82 ASSYIGKNI 90 A+ +GK + Sbjct: 95 ATQLVGKGV 103 >gi|148980303|ref|ZP_01815990.1| flagellar basal body rod modification protein D [Vibrionales bacterium SWAT-3] gi|145961322|gb|EDK26632.1| flagellar basal body rod modification protein D [Vibrionales bacterium SWAT-3] Length = 222 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 6/54 (11%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME------QSVQMNSTLQELLK 75 F+ L++ QI++QDP P +E VAQLA FSQ+E Q Q NST+ + L+ Sbjct: 35 FITLMVAQIENQDPLNPTDGTEYVAQLAQFSQVESTENLVQLTQNNSTMLDNLQ 88 >gi|83593868|ref|YP_427620.1| flagellar hook capping protein [Rhodospirillum rubrum ATCC 11170] gi|83576782|gb|ABC23333.1| Flagellar hook capping protein [Rhodospirillum rubrum ATCC 11170] Length = 229 Score = 43.9 bits (102), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 3/66 (4%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN---LAQASS 84 FL +L TQ+K+Q+P P +E QL +SQ+EQ + N L+ L+ S N A + Sbjct: 34 FLTVLTTQLKNQNPLNPTDPNEMTQQLISYSQVEQQILGNQYLENLVLSTNNQTAETALA 93 Query: 85 YIGKNI 90 ++GK + Sbjct: 94 FVGKEV 99 >gi|207110586|ref|ZP_03244748.1| flagellar basal body rod modification protein [Helicobacter pylori HPKX_438_CA4C1] Length = 95 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 34/51 (66%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73 L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E + T+QE+ Sbjct: 9 LDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEV 59 >gi|295097204|emb|CBK86294.1| Flagellar hook capping protein [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 232 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 41/66 (62%), Gaps = 3/66 (4%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST---LQELLKSNNLAQASS 84 F+KLL+ Q+++QDPT PM ++ +QLA F+ ++N++ +Q L+ A+S Sbjct: 29 FMKLLVAQMQNQDPTNPMDNNQLTSQLAQFNTAAGVEKLNASVGNVQALMAQLGSMSAAS 88 Query: 85 YIGKNI 90 ++G+ + Sbjct: 89 WVGRGV 94 >gi|258622487|ref|ZP_05717509.1| Flagellar basal-body rod modification protein flgD [Vibrio mimicus VM573] gi|262173353|ref|ZP_06041030.1| flagellar basal-body rod modification protein FlgD [Vibrio mimicus MB-451] gi|258585187|gb|EEW09914.1| Flagellar basal-body rod modification protein flgD [Vibrio mimicus VM573] gi|261890711|gb|EEY36698.1| flagellar basal-body rod modification protein FlgD [Vibrio mimicus MB-451] Length = 227 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 32/47 (68%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 Q+ F+ +++ QI++QDP P+ +E V+QLA FSQ++ M+ +Q Sbjct: 42 QNEFITMMVAQIQNQDPLNPLDGTEYVSQLAQFSQVQSIENMSGLMQ 88 >gi|320107028|ref|YP_004182618.1| flagellar hook capping protein [Terriglobus saanensis SP1PR4] gi|319925549|gb|ADV82624.1| flagellar hook capping protein [Terriglobus saanensis SP1PR4] Length = 94 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 22/74 (29%), Positives = 42/74 (56%), Gaps = 5/74 (6%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 ++T NPT + S T+ D F+ LL+ ++++QDPT P ++ + QL + ++Q Sbjct: 19 MDTSTNPT-----TATSNDTITSDDFMTLLVAEMQNQDPTAPSDPTQYIQQLVGVNSLQQ 73 Query: 63 SVQMNSTLQELLKS 76 + +N+ + EL S Sbjct: 74 LIGINTGIGELTSS 87 >gi|88704307|ref|ZP_01102021.1| flagellar basal-body rod modification protein FlgD [Congregibacter litoralis KT71] gi|88701358|gb|EAQ98463.1| flagellar basal-body rod modification protein FlgD [Congregibacter litoralis KT71] Length = 232 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 48/81 (59%), Gaps = 5/81 (6%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQASS 84 FL L++ ++++QDPT P S+ + QLA F + ++N++ L L QA+S Sbjct: 33 FLALMVAELENQDPTNPNSNSDMMGQLAQFGTVSGIDELNASFGGLSSALTGGQALQAAS 92 Query: 85 YIGKNI-TNAD-GSISGVVNA 103 +G+++ T+++ G ++G NA Sbjct: 93 LVGRSVMTDSNLGQLTGAANA 113 >gi|160939660|ref|ZP_02087008.1| hypothetical protein CLOBOL_04552 [Clostridium bolteae ATCC BAA-613] gi|158437451|gb|EDP15215.1| hypothetical protein CLOBOL_04552 [Clostridium bolteae ATCC BAA-613] Length = 233 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 8/86 (9%) Query: 14 FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73 F KK + D FL L++ Q+K+QD P+ ++ V QLA S M+Q ++E+ Sbjct: 86 FGDGDDKK-VSMDDFLTLMVAQLKNQDFMNPVDDTQYVTQLAQISTMQQ-------MEEM 137 Query: 74 LKSNNLAQASSYIGKNITNADGSISG 99 + + +S +GKN++ A ++SG Sbjct: 138 AYNAKSSYVASLVGKNVSAAKFTVSG 163 >gi|217972597|ref|YP_002357348.1| flagellar basal body rod modification protein [Shewanella baltica OS223] gi|217497732|gb|ACK45925.1| flagellar hook capping protein [Shewanella baltica OS223] Length = 256 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 4/85 (4%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 P ++KS++ L QD F LL Q+ QDP +P+ + +AQ+A FS ++ ++N Sbjct: 44 PKDSIVPEAKSQQ-LTQDDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGIGKLND 102 Query: 69 ---TLQELLKSNNLAQASSYIGKNI 90 L ++ S+ QAS +G+ + Sbjct: 103 EIVNLNSVMTSSQALQASGLVGRKV 127 >gi|197285511|ref|YP_002151383.1| basal-body rod modification protein [Proteus mirabilis HI4320] gi|194682998|emb|CAR43447.1| basal-body rod modification protein [Proteus mirabilis HI4320] Length = 264 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 2/74 (2%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 P+ K S G FL LLITQ+++QDPT PM+ +E +QLA S +E +N Sbjct: 20 PSSYHTKKGGSDDIKGN--FLTLLITQMQNQDPTNPMQNNELTSQLAQISTVEGIETLNK 77 Query: 69 TLQELLKSNNLAQA 82 T+ ++ + +QA Sbjct: 78 TVNTIVGQIDQSQA 91 >gi|153001473|ref|YP_001367154.1| flagellar basal body rod modification protein [Shewanella baltica OS185] gi|160876204|ref|YP_001555520.1| flagellar basal body rod modification protein [Shewanella baltica OS195] gi|151366091|gb|ABS09091.1| flagellar hook capping protein [Shewanella baltica OS185] gi|160861726|gb|ABX50260.1| flagellar hook capping protein [Shewanella baltica OS195] gi|315268394|gb|ADT95247.1| flagellar hook capping protein [Shewanella baltica OS678] Length = 256 Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 4/85 (4%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 P ++KS++ L QD F LL Q+ QDP +P+ + +AQ+A FS ++ ++N Sbjct: 44 PKDSIVPEAKSQQ-LTQDDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGIGKLND 102 Query: 69 ---TLQELLKSNNLAQASSYIGKNI 90 L ++ S+ QAS +G+ + Sbjct: 103 QIVNLNSVMTSSQALQASGLVGRKV 127 >gi|237653584|ref|YP_002889898.1| flagellar hook capping protein [Thauera sp. MZ1T] gi|237624831|gb|ACR01521.1| flagellar hook capping protein [Thauera sp. MZ1T] Length = 224 Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 3/66 (4%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK---SNNLAQASS 84 FL LL TQ+K+QDP PM+ +E +QLA S ++ ++N Q + + + QA++ Sbjct: 36 FLTLLTTQLKNQDPLNPMENAEVTSQLAQMSTVDGIERLNKMFQSFVDGQSAYDSMQAAA 95 Query: 85 YIGKNI 90 +G+ + Sbjct: 96 LVGRGV 101 >gi|254286493|ref|ZP_04961450.1| flagellar hook capping protein [Vibrio cholerae AM-19226] gi|150423442|gb|EDN15386.1| flagellar hook capping protein [Vibrio cholerae AM-19226] Length = 101 Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 3/68 (4%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKS 76 +K+L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+ + L + S Sbjct: 33 QKSLKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNTQFESLNSSMTS 92 Query: 77 NNLAQASS 84 N QASS Sbjct: 93 NQALQASS 100 >gi|149191152|ref|ZP_01869410.1| flagellar basal body rod modification protein D [Vibrio shilonii AK1] gi|148834990|gb|EDL51969.1| flagellar basal body rod modification protein D [Vibrio shilonii AK1] Length = 221 Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 6/54 (11%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME------QSVQMNSTLQELLK 75 F+ L++ QI++QDP P +E VAQLA FSQ+E Q +Q N+T+ + L+ Sbjct: 35 FITLMVAQIENQDPLNPTDGTEYVAQLAQFSQVESTENLVQLMQNNTTMLDNLQ 88 >gi|326319096|ref|YP_004236768.1| flagellar hook capping protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375932|gb|ADX48201.1| flagellar hook capping protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 216 Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 3/79 (3%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ--- 71 S S + QD FLKLL+ Q+ +QDP P+ ++ +Q+A + + Q+N ++Q Sbjct: 18 SNSATDPAAAQDRFLKLLVAQLNNQDPMNPLDNAQMTSQMAQINTVTGIQQLNLSMQTMA 77 Query: 72 ELLKSNNLAQASSYIGKNI 90 E + Q + IG+N+ Sbjct: 78 EQFTTMQTLQGTMMIGRNV 96 >gi|126175147|ref|YP_001051296.1| flagellar basal body rod modification protein [Shewanella baltica OS155] gi|125998352|gb|ABN62427.1| flagellar hook capping protein [Shewanella baltica OS155] Length = 256 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 4/85 (4%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 P ++KS++ L QD F LL Q+ QDP +P+ + +AQ+A FS ++ ++N Sbjct: 44 PKDSIVPEAKSQQ-LTQDDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGIGKLND 102 Query: 69 ---TLQELLKSNNLAQASSYIGKNI 90 L ++ S+ QAS +G+ + Sbjct: 103 EIVNLNSVMTSSQALQASGLVGRKV 127 >gi|51597638|ref|YP_071829.1| flagellar basal body rod modification protein [Yersinia pseudotuberculosis IP 32953] gi|186896772|ref|YP_001873884.1| flagellar basal body rod modification protein [Yersinia pseudotuberculosis PB1/+] gi|51590920|emb|CAH22576.1| Possible FlgD-like basal-body rod modification protein [Yersinia pseudotuberculosis IP 32953] gi|186699798|gb|ACC90427.1| flagellar hook capping protein [Yersinia pseudotuberculosis PB1/+] Length = 218 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 4/55 (7%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82 F+ LL+ QIK+QDP P +E V+Q+A SQ VQ + +LLKSN + A Sbjct: 33 FMTLLVAQIKNQDPLNPADGTEFVSQMAQLSQ----VQATENMAKLLKSNTVQMA 83 >gi|304409979|ref|ZP_07391598.1| flagellar hook capping protein [Shewanella baltica OS183] gi|307302308|ref|ZP_07582066.1| flagellar hook capping protein [Shewanella baltica BA175] gi|304351388|gb|EFM15787.1| flagellar hook capping protein [Shewanella baltica OS183] gi|306914346|gb|EFN44767.1| flagellar hook capping protein [Shewanella baltica BA175] Length = 256 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 3/71 (4%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS---TLQELLKSNNL 79 L QD F LL Q+ QDP +P+ + +AQ+A FS ++ ++N L ++ S+ Sbjct: 57 LTQDDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGIGKLNDQIVNLNSVMTSSQA 116 Query: 80 AQASSYIGKNI 90 QAS +G+ + Sbjct: 117 LQASGLVGRKV 127 >gi|152975164|ref|YP_001374681.1| flagellar basal body rod modification protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023916|gb|ABS21686.1| flagellar hook capping protein [Bacillus cytotoxicus NVH 391-98] Length = 174 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 63/118 (53%), Gaps = 15/118 (12%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELL 74 K+ +G+D FLKL +T +++QDP M + + Q++ S MEQ M + L++ + Sbjct: 35 KTPGVMGKDDFLKLFLTSLQYQDPFNAMDMDQMMNQMSQMSLMEQVQNMTKAVNALKDTV 94 Query: 75 KSNNLAQASSYIGKNI--TNADGS-ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129 + L ++GK I + DG+ ISG V+A+++++ N EI + G +I Sbjct: 95 NTTALDGGMKFLGKYILGPSTDGNQISGKVDAVRLAA---------NNEIQLVVGDKI 143 >gi|170022970|ref|YP_001719475.1| flagellar basal body rod modification protein [Yersinia pseudotuberculosis YPIII] gi|169749504|gb|ACA67022.1| flagellar hook capping protein [Yersinia pseudotuberculosis YPIII] Length = 218 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 4/55 (7%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82 F+ LL+ QIK+QDP P +E V+Q+A SQ VQ + +LLKSN + A Sbjct: 33 FMTLLVAQIKNQDPLNPADGTEFVSQMAQLSQ----VQATENMAKLLKSNTVQMA 83 >gi|163803168|ref|ZP_02197051.1| flagellar basal body rod modification protein D [Vibrio sp. AND4] gi|159173068|gb|EDP57901.1| flagellar basal body rod modification protein D [Vibrio sp. AND4] Length = 228 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 32/47 (68%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 ++ F+ L++ QI++QDP P+ +E V+QLA FSQ++ + M +Q Sbjct: 40 ENEFISLMVAQIQNQDPLNPLDGTEYVSQLAQFSQVQSTENMAMLMQ 86 >gi|103488386|ref|YP_617947.1| flagellar hook capping protein [Sphingopyxis alaskensis RB2256] gi|98978463|gb|ABF54614.1| flagellar hook capping protein [Sphingopyxis alaskensis RB2256] Length = 100 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 34/60 (56%) Query: 14 FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73 F + + +GQ FL+L+ Q+ QDP P+ +E VAQ+A FS + + N+ L ++ Sbjct: 13 FHSPGTSQQMGQSDFLRLMTAQLSQQDPFNPVDNTEMVAQMAQFSSLAGISETNTVLAQI 72 >gi|153948005|ref|YP_001399633.1| flagellar basal body rod modification protein [Yersinia pseudotuberculosis IP 31758] gi|152959500|gb|ABS46961.1| basal-body rod modification protein FlgD [Yersinia pseudotuberculosis IP 31758] Length = 218 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 4/55 (7%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82 F+ LL+ QIK+QDP P +E V+Q+A SQ VQ + +LLKSN + A Sbjct: 33 FMTLLVAQIKNQDPLNPADGTEFVSQMAQLSQ----VQATENMAKLLKSNTVQMA 83 >gi|22127328|ref|NP_670751.1| flagellar basal body rod modification protein [Yersinia pestis KIM 10] gi|45442795|ref|NP_994334.1| flagellar basal body rod modification protein [Yersinia pestis biovar Microtus str. 91001] gi|108809056|ref|YP_652972.1| flagellar basal body rod modification protein [Yersinia pestis Antiqua] gi|108810747|ref|YP_646514.1| flagellar basal body rod modification protein [Yersinia pestis Nepal516] gi|145597816|ref|YP_001161892.1| flagellar basal body rod modification protein [Yersinia pestis Pestoides F] gi|150260250|ref|ZP_01916978.1| lateral flagellar hook capping protein [Yersinia pestis CA88-4125] gi|162420922|ref|YP_001604848.1| flagellar basal body rod modification protein [Yersinia pestis Angola] gi|165925067|ref|ZP_02220899.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Orientalis str. F1991016] gi|165939088|ref|ZP_02227640.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Orientalis str. IP275] gi|166008806|ref|ZP_02229704.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Antiqua str. E1979001] gi|166211874|ref|ZP_02237909.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Antiqua str. B42003004] gi|167398737|ref|ZP_02304261.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167418933|ref|ZP_02310686.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425065|ref|ZP_02316818.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167466341|ref|ZP_02331045.1| basal-body rod modification protein FlgD [Yersinia pestis FV-1] gi|218927911|ref|YP_002345786.1| flagellar basal body rod modification protein [Yersinia pestis CO92] gi|229837407|ref|ZP_04457570.1| flagellar basal-body rod modification protein flgD [Yersinia pestis Pestoides A] gi|229840620|ref|ZP_04460779.1| flagellar basal-body rod modification protein flgD [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842829|ref|ZP_04462981.1| flagellar basal-body rod modification protein flgD [Yersinia pestis biovar Orientalis str. India 195] gi|229900944|ref|ZP_04516068.1| flagellar basal-body rod modification protein flgD [Yersinia pestis Nepal516] gi|270487674|ref|ZP_06204748.1| flagellar hook capping protein [Yersinia pestis KIM D27] gi|294502787|ref|YP_003566849.1| flagellar basal body rod modification protein [Yersinia pestis Z176003] gi|21960409|gb|AAM87002.1|AE013948_10 putative flagellar assembly protein [Yersinia pestis KIM 10] gi|45437661|gb|AAS63211.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Microtus str. 91001] gi|108774395|gb|ABG16914.1| basal-body rod modification protein [Yersinia pestis Nepal516] gi|108780969|gb|ABG15027.1| putative basal-body rod modification protein [Yersinia pestis Antiqua] gi|115346522|emb|CAL19398.1| putative basal-body rod modification protein [Yersinia pestis CO92] gi|145209512|gb|ABP38919.1| basal-body rod modification protein [Yersinia pestis Pestoides F] gi|149289658|gb|EDM39735.1| lateral flagellar hook capping protein [Yersinia pestis CA88-4125] gi|162353737|gb|ABX87685.1| basal-body rod modification protein FlgD [Yersinia pestis Angola] gi|165913044|gb|EDR31669.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Orientalis str. IP275] gi|165923267|gb|EDR40418.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Orientalis str. F1991016] gi|165992145|gb|EDR44446.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Antiqua str. E1979001] gi|166206620|gb|EDR51100.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Antiqua str. B42003004] gi|166962927|gb|EDR58948.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051241|gb|EDR62649.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055828|gb|EDR65609.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229682283|gb|EEO78375.1| flagellar basal-body rod modification protein flgD [Yersinia pestis Nepal516] gi|229690096|gb|EEO82153.1| flagellar basal-body rod modification protein flgD [Yersinia pestis biovar Orientalis str. India 195] gi|229696986|gb|EEO87033.1| flagellar basal-body rod modification protein flgD [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705530|gb|EEO91540.1| flagellar basal-body rod modification protein flgD [Yersinia pestis Pestoides A] gi|262360819|gb|ACY57540.1| flagellar basal body rod modification protein [Yersinia pestis D106004] gi|262364763|gb|ACY61320.1| flagellar basal body rod modification protein [Yersinia pestis D182038] gi|270336178|gb|EFA46955.1| flagellar hook capping protein [Yersinia pestis KIM D27] gi|294353246|gb|ADE63587.1| flagellar basal body rod modification protein [Yersinia pestis Z176003] gi|320016712|gb|ADW00284.1| Flagellar basal-body rod modification proteinflgD [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 218 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 4/55 (7%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82 F+ LL+ QIK+QDP P +E V+Q+A SQ VQ + +LLKSN + A Sbjct: 33 FMTLLVAQIKNQDPLNPADGTEFVSQMAQLSQ----VQATENMAKLLKSNTVQMA 83 >gi|332162902|ref|YP_004299479.1| Basal-body rod modification protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318604251|emb|CBY25749.1| flagellar basal-body rod modification protein FlgD [Yersinia enterocolitica subsp. palearctica Y11] gi|325667132|gb|ADZ43776.1| Basal-body rod modification protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330863352|emb|CBX73475.1| hypothetical protein YEW_ES20700 [Yersinia enterocolitica W22703] Length = 219 Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 4/50 (8%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77 F+ LL+ QI++QDP PM +E V Q+A SQ VQ + ++LKSN Sbjct: 34 FMTLLVAQIQNQDPLNPMDGTEFVGQMAQLSQ----VQSTENMAKMLKSN 79 >gi|120598231|ref|YP_962805.1| flagellar basal body rod modification protein [Shewanella sp. W3-18-1] gi|120558324|gb|ABM24251.1| flagellar hook capping protein [Shewanella sp. W3-18-1] Length = 253 Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 48/85 (56%), Gaps = 4/85 (4%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 PT+ ++KS++ L Q+ F LL Q+ QDP +P+ + +AQ+A FS ++ ++N Sbjct: 41 PTESIVPEAKSQQ-LTQEDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGISKLNK 99 Query: 69 ---TLQELLKSNNLAQASSYIGKNI 90 L ++ S+ QA+ +G+ + Sbjct: 100 EIVNLNSVMTSSQALQATGLVGRKV 124 >gi|56460253|ref|YP_155534.1| flagellar basal body rod modification protein [Idiomarina loihiensis L2TR] gi|56179263|gb|AAV81985.1| Flagellar hook capping protein [Idiomarina loihiensis L2TR] Length = 227 Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust. Identities = 20/80 (25%), Positives = 42/80 (52%), Gaps = 3/80 (3%) Query: 14 FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73 ++ + L Q+ F +LL Q+ QDP++P++ + +AQ+ F+ E ++ + Sbjct: 23 YADPDERSKLEQEDFFRLLTEQLSMQDPSKPVENDQMIAQMTNFTMAEGITGLSERFDQF 82 Query: 74 ---LKSNNLAQASSYIGKNI 90 + SN QAS+ +G+ + Sbjct: 83 ASDMTSNQALQASTMVGRKV 102 >gi|302387790|ref|YP_003823612.1| flagellar hook capping protein [Clostridium saccharolyticum WM1] gi|302198418|gb|ADL05989.1| flagellar hook capping protein [Clostridium saccharolyticum WM1] Length = 192 Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 62/125 (49%), Gaps = 11/125 (8%) Query: 14 FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73 + + S L D F KLL Q+++QD + PM SE + Q+ + M+ ++ +++ Sbjct: 17 LTDNSSSGGLTTDGFFKLLAAQLQNQDMSSPMDNSEMMTQMTQIAMMQAMNNFSTAMEDF 76 Query: 74 LKSNNLAQASSYIGKN--ITNADGS-----ISGVVNAIQVSSTGLTAITVDNTEIPITTG 126 + N + +S +GK I AD + I+G V + + S G+ I +++ + TG Sbjct: 77 SQINTINYGTSMMGKEVMIAAADKTGQIKKINGTVTRVDIFS-GIPTIYINDDD---KTG 132 Query: 127 IRISN 131 I+N Sbjct: 133 YSIAN 137 >gi|167644974|ref|YP_001682637.1| flagellar hook capping protein [Caulobacter sp. K31] gi|167347404|gb|ABZ70139.1| flagellar hook capping protein [Caulobacter sp. K31] Length = 232 Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust. Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 3/94 (3%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 M + N + + S++ + FLKLL TQ+K+QDP P S+ +Q+ + + Sbjct: 1 MAVTATSNTVTDKINNSRTSLASNEQTFLKLLTTQLKNQDPLSPTDTSQMTSQITQMTGV 60 Query: 61 EQSVQMNSTLQELLK---SNNLAQASSYIGKNIT 91 EQ + N L L+ +++ + +GK +T Sbjct: 61 EQQLVTNELLTALVGMSTGGGISEGVNLMGKQVT 94 >gi|32490789|ref|NP_871043.1| hypothetical protein WGLp040 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25165995|dbj|BAC24186.1| flgD [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 279 Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 44/69 (63%), Gaps = 9/69 (13%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV---QMNSTLQELLKSNNLAQA 82 D FLK+++ QIK+QDPT P+ + Q+ +QM ++ ++N ++QE+ ++ N +Q Sbjct: 84 DNFLKMILVQIKNQDPTHPIDNNHLTTQM---TQMHTALGIEKLNKSIQEIKQTMNNSQY 140 Query: 83 ---SSYIGK 88 S++IGK Sbjct: 141 INLSNWIGK 149 >gi|307546969|ref|YP_003899448.1| flagellar basal body rod modification protein [Halomonas elongata DSM 2581] gi|307218993|emb|CBV44263.1| flagellar basal body rod modification protein [Halomonas elongata DSM 2581] Length = 230 Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 3/66 (4%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQASS 84 F+ LL+TQ+++QDP PM + +QLA + + ++N +L E+ + + QAS Sbjct: 33 FMTLLVTQLQNQDPLNPMDNHQTTSQLAQINTVSGIEKLNDSLSEINGQIDAGQSLQASG 92 Query: 85 YIGKNI 90 IGK + Sbjct: 93 LIGKGV 98 >gi|325109019|ref|YP_004270087.1| flagellar hook capping protein [Planctomyces brasiliensis DSM 5305] gi|324969287|gb|ADY60065.1| flagellar hook capping protein [Planctomyces brasiliensis DSM 5305] Length = 160 Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 4/78 (5%) Query: 3 INTEVNPTQQEFSKSKSKKT----LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58 I T +PT Q T L +AFLKL+I Q+++QDPTEP E + Q++ Sbjct: 4 IETVYSPTGQPVQIVDGNDTGFNALDPEAFLKLMIVQLQNQDPTEPTSNEELLNQISTMR 63 Query: 59 QMEQSVQMNSTLQELLKS 76 ++ S+++ + L S Sbjct: 64 SLQSSIELEDMIASLANS 81 >gi|300900361|ref|ZP_07118537.1| flagellar hook capping protein [Escherichia coli MS 198-1] gi|300356129|gb|EFJ71999.1| flagellar hook capping protein [Escherichia coli MS 198-1] Length = 225 Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 6/56 (10%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM----EQSVQMNSTLQELLKSN 77 D FL L + +I++QDPT+P A+E + QL+ +Q+ E SVQ N+ +L SN Sbjct: 25 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANT--NAVLMSN 78 >gi|300936124|ref|ZP_07151063.1| flagellar hook capping protein [Escherichia coli MS 21-1] gi|306813305|ref|ZP_07447498.1| putative lateral flagellar hook assembly protein [Escherichia coli NC101] gi|300458702|gb|EFK22195.1| flagellar hook capping protein [Escherichia coli MS 21-1] gi|305854068|gb|EFM54507.1| putative lateral flagellar hook assembly protein [Escherichia coli NC101] Length = 237 Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 4/47 (8%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM----EQSVQMNS 68 D FL L + +I++QDPT+P A+E + QL+ +Q+ E SVQ N+ Sbjct: 37 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANT 83 >gi|330818586|ref|YP_004362291.1| basal-body rod modification protein FlgD [Burkholderia gladioli BSR3] gi|327370979|gb|AEA62335.1| basal-body rod modification protein FlgD [Burkholderia gladioli BSR3] Length = 259 Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 6/92 (6%) Query: 5 TEVNPTQQEFSKSKSKKTLGQD---AFLKLLITQIKHQDPTEPMKASE---QVAQLAVFS 58 T VN T + + S T D FL LL+TQ+++QDPT P+ +S+ Q+AQ+ S Sbjct: 12 TTVNNTPTDTMNANSSNTSAADLQQTFLTLLVTQLQNQDPTSPVDSSQMTSQLAQINTVS 71 Query: 59 QMEQSVQMNSTLQELLKSNNLAQASSYIGKNI 90 + Q ++L + + QA+ +G N+ Sbjct: 72 GIAQLNSSLTSLSSQITAGQQTQAAMLVGSNV 103 >gi|327254553|gb|EGE66169.1| flagellar hook capping family protein [Escherichia coli STEC_7v] Length = 237 Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 4/47 (8%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM----EQSVQMNS 68 D FL L + +I++QDPT+P A+E + QL+ +Q+ E SVQ N+ Sbjct: 37 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANT 83 >gi|323975931|gb|EGB71025.1| flagellar hook capping protein [Escherichia coli TW10509] Length = 237 Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 4/47 (8%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM----EQSVQMNS 68 D FL L + +I++QDPT+P A+E + QL+ +Q+ E SVQ N+ Sbjct: 37 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANT 83 >gi|119775451|ref|YP_928191.1| flagellar basal body rod modification protein [Shewanella amazonensis SB2B] gi|119767951|gb|ABM00522.1| flagellar hook capping protein [Shewanella amazonensis SB2B] Length = 242 Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 5/84 (5%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS---TLQELLKS 76 K+ L Q+ F LL Q+ QDP +P++ + +AQ+A FS ++ +N L ++ S Sbjct: 40 KQELTQEDFFALLSQQLSMQDPFKPVENDQMIAQMASFSTVDGIANLNDHIVNLNTVMTS 99 Query: 77 NNLAQASSYIGKN--ITNADGSIS 98 + QAS +G+ I +A G +S Sbjct: 100 SQALQASGLVGQKVLIPSASGHVS 123 >gi|323191537|gb|EFZ76798.1| flagellar hook capping family protein [Escherichia coli RN587/1] Length = 237 Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 4/47 (8%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM----EQSVQMNS 68 D FL L + +I++QDPT+P A+E + QL+ +Q+ E SVQ N+ Sbjct: 37 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANT 83 >gi|218703524|ref|YP_002411043.1| lateral flagellar rod FlgD-like protein [Escherichia coli UMN026] gi|293403354|ref|ZP_06647445.1| predicted protein [Escherichia coli FVEC1412] gi|298378966|ref|ZP_06988847.1| flagellar basal-body rod modification protein FlgD [Escherichia coli FVEC1302] gi|218430621|emb|CAR11487.1| Lateral flagellar rod protein (FlgD-like) [Escherichia coli UMN026] gi|291429207|gb|EFF02227.1| predicted protein [Escherichia coli FVEC1412] gi|298280079|gb|EFI21583.1| flagellar basal-body rod modification protein FlgD [Escherichia coli FVEC1302] Length = 237 Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 4/47 (8%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM----EQSVQMNS 68 D FL L + +I++QDPT+P A+E + QL+ +Q+ E SVQ N+ Sbjct: 37 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANT 83 >gi|331645417|ref|ZP_08346521.1| putative flagellar hook capping protein [Escherichia coli M605] gi|331045579|gb|EGI17705.1| putative flagellar hook capping protein [Escherichia coli M605] Length = 237 Score = 42.7 bits (99), Expect = 0.019, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 4/47 (8%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM----EQSVQMNS 68 D FL L + +I++QDPT+P A+E + QL+ +Q+ E SVQ N+ Sbjct: 37 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANT 83 >gi|170021361|ref|YP_001726315.1| flagellar hook capping protein [Escherichia coli ATCC 8739] gi|260853465|ref|YP_003227356.1| putative lateral flagellar hook assembly protein [Escherichia coli O26:H11 str. 11368] gi|260866412|ref|YP_003232814.1| putative lateral flagellar hook assembly protein [Escherichia coli O111:H- str. 11128] gi|169756289|gb|ACA78988.1| flagellar hook capping protein [Escherichia coli ATCC 8739] gi|257752114|dbj|BAI23616.1| predicted lateral flagellar hook assembly protein [Escherichia coli O26:H11 str. 11368] gi|257762768|dbj|BAI34263.1| predicted lateral flagellar hook assembly protein [Escherichia coli O111:H- str. 11128] gi|323158104|gb|EFZ44203.1| flagellar hook capping family protein [Escherichia coli EPECa14] gi|323178495|gb|EFZ64073.1| flagellar hook capping family protein [Escherichia coli 1180] Length = 237 Score = 42.7 bits (99), Expect = 0.019, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 4/47 (8%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM----EQSVQMNS 68 D FL L + +I++QDPT+P A+E + QL+ +Q+ E SVQ N+ Sbjct: 37 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANT 83 >gi|170679856|ref|YP_001742372.1| lateral flagellar rod protein LfgD [Escherichia coli SMS-3-5] gi|170517574|gb|ACB15752.1| lateral flagellar rod protein LfgD [Escherichia coli SMS-3-5] Length = 237 Score = 42.7 bits (99), Expect = 0.019, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 4/47 (8%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM----EQSVQMNS 68 D FL L + +I++QDPT+P A+E + QL+ +Q+ E SVQ N+ Sbjct: 37 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANT 83 >gi|315616828|gb|EFU97445.1| flagellar hook capping family protein [Escherichia coli 3431] Length = 244 Score = 42.4 bits (98), Expect = 0.019, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 4/47 (8%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM----EQSVQMNS 68 D FL L + +I++QDPT+P A+E + QL+ +Q+ E SVQ N+ Sbjct: 37 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANT 83 >gi|307136857|ref|ZP_07496213.1| putative lateral flagellar hook assembly protein [Escherichia coli H736] gi|331640712|ref|ZP_08341859.1| putative flagellar hook capping protein [Escherichia coli H736] gi|331040086|gb|EGI12294.1| putative flagellar hook capping protein [Escherichia coli H736] Length = 237 Score = 42.4 bits (98), Expect = 0.019, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 4/47 (8%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM----EQSVQMNS 68 D FL L + +I++QDPT+P A+E + QL+ +Q+ E SVQ N+ Sbjct: 37 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANT 83 >gi|331671803|ref|ZP_08372599.1| putative flagellar hook capping protein [Escherichia coli TA280] gi|331070792|gb|EGI42151.1| putative flagellar hook capping protein [Escherichia coli TA280] Length = 237 Score = 42.4 bits (98), Expect = 0.019, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 4/47 (8%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM----EQSVQMNS 68 D FL L + +I++QDPT+P A+E + QL+ +Q+ E SVQ N+ Sbjct: 37 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANT 83 >gi|300817271|ref|ZP_07097489.1| flagellar hook capping protein [Escherichia coli MS 107-1] gi|307313520|ref|ZP_07593141.1| flagellar hook capping protein [Escherichia coli W] gi|300530247|gb|EFK51309.1| flagellar hook capping protein [Escherichia coli MS 107-1] gi|306906688|gb|EFN37199.1| flagellar hook capping protein [Escherichia coli W] gi|315059541|gb|ADT73868.1| flagellar hook assembly protein [Escherichia coli W] gi|323379900|gb|ADX52168.1| flagellar hook capping protein [Escherichia coli KO11] Length = 237 Score = 42.4 bits (98), Expect = 0.019, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 4/47 (8%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM----EQSVQMNS 68 D FL L + +I++QDPT+P A+E + QL+ +Q+ E SVQ N+ Sbjct: 37 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANT 83 >gi|241766919|ref|ZP_04764725.1| flagellar hook capping protein [Acidovorax delafieldii 2AN] gi|241362623|gb|EER58471.1| flagellar hook capping protein [Acidovorax delafieldii 2AN] Length = 220 Score = 42.4 bits (98), Expect = 0.019, Method: Compositional matrix adjust. Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 10/88 (11%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 QD FLKLL+ Q+ +QDP P+ ++ +Q+A + + Q+N T++ + + + Q Sbjct: 32 QDRFLKLLVAQLNNQDPMNPLDNAQMTSQMAQINTVTGIQQLNQTMKSMADQFSALQVLQ 91 Query: 82 ASSYIGK-------NITNADGSISGVVN 102 +S IG+ N+ ADG G+ + Sbjct: 92 GASMIGRSVVTEGNNLPVADGVGKGMFD 119 >gi|323181546|gb|EFZ66966.1| flagellar hook capping family protein [Escherichia coli 1357] Length = 237 Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 4/47 (8%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM----EQSVQMNS 68 D FL L + +I++QDPT+P A+E + QL+ +Q+ E SVQ N+ Sbjct: 37 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANT 83 >gi|238762360|ref|ZP_04623331.1| Basal-body rod modification protein [Yersinia kristensenii ATCC 33638] gi|238699345|gb|EEP92091.1| Basal-body rod modification protein [Yersinia kristensenii ATCC 33638] Length = 219 Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 4/50 (8%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77 F+ LL+ QI++QDP PM +E V+Q+A SQ VQ + ++LKSN Sbjct: 34 FMTLLVAQIQNQDPLNPMDGTEFVSQMAQLSQ----VQSTENMAKMLKSN 79 >gi|293408366|ref|ZP_06652205.1| conserved hypothetical protein [Escherichia coli B354] gi|291471544|gb|EFF14027.1| conserved hypothetical protein [Escherichia coli B354] Length = 234 Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 4/47 (8%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM----EQSVQMNS 68 D FL L + +I++QDPT+P A+E + QL+ +Q+ E SVQ N+ Sbjct: 34 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANT 80 >gi|301648571|ref|ZP_07248286.1| flagellar hook capping protein [Escherichia coli MS 146-1] gi|301073358|gb|EFK88164.1| flagellar hook capping protein [Escherichia coli MS 146-1] Length = 246 Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 4/47 (8%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM----EQSVQMNS 68 D FL L + +I++QDPT+P A+E + QL+ +Q+ E SVQ N+ Sbjct: 46 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANT 92 >gi|256020227|ref|ZP_05434092.1| flagellar hook capping protein [Shigella sp. D9] gi|332281389|ref|ZP_08393802.1| lateral flagellar rod protein [Shigella sp. D9] gi|332103741|gb|EGJ07087.1| lateral flagellar rod protein [Shigella sp. D9] Length = 237 Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 4/47 (8%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM----EQSVQMNS 68 D FL L + +I++QDPT+P A+E + QL+ +Q+ E SVQ N+ Sbjct: 37 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANT 83 >gi|149184206|ref|ZP_01862524.1| flagellar hook capping protein [Erythrobacter sp. SD-21] gi|148831526|gb|EDL49959.1| flagellar hook capping protein [Erythrobacter sp. SD-21] Length = 71 Score = 42.4 bits (98), Expect = 0.021, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 33/52 (63%) Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73 +LGQ FL+LL Q++ QDP P+ E ++Q+A FS + + N++L+ + Sbjct: 3 SLGQGDFLRLLTVQMQQQDPFNPVDNKEMLSQMAQFSSLAGVAETNASLERI 54 >gi|296103612|ref|YP_003613758.1| Flagellar basal-body rod modification protein, FlgD [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058071|gb|ADF62809.1| Flagellar basal-body rod modification protein, FlgD [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 234 Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 41/66 (62%), Gaps = 3/66 (4%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST---LQELLKSNNLAQASS 84 F+ LL+ Q+K+QDPT PM ++ +QLA F+ ++NS+ +Q ++ AS+ Sbjct: 28 FMTLLVAQMKNQDPTNPMDNNQLTSQLAQFNMAAGVEKLNSSVAGVQAMMIQLGSMSASA 87 Query: 85 YIGKNI 90 ++G+++ Sbjct: 88 WVGRSV 93 >gi|170743225|ref|YP_001771880.1| flagellar hook capping protein [Methylobacterium sp. 4-46] gi|168197499|gb|ACA19446.1| flagellar hook capping protein [Methylobacterium sp. 4-46] Length = 233 Score = 42.0 bits (97), Expect = 0.025, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 46/79 (58%), Gaps = 4/79 (5%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNLAQASS 84 FL LL TQ+K+Q+P +P+ ++ QL F+ +EQ ++ N L ++ K+ + A+ Sbjct: 33 FLTLLTTQLKNQNPLDPLDTNQFTQQLVQFASVEQQLKTNDRLDTMVAASKAATASSAAG 92 Query: 85 YIGKNITNADGSISGVVNA 103 +GK +T ADG+ + + Sbjct: 93 LVGKTVT-ADGATAALAGG 110 >gi|121607562|ref|YP_995369.1| flagellar hook capping protein [Verminephrobacter eiseniae EF01-2] gi|121552202|gb|ABM56351.1| flagellar hook capping protein [Verminephrobacter eiseniae EF01-2] Length = 236 Score = 42.0 bits (97), Expect = 0.025, Method: Compositional matrix adjust. Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 QD FLKLL+ Q+ +QDP P+ ++ +Q+A + + Q+N T+Q + + + Q Sbjct: 48 QDRFLKLLVAQLNNQDPMNPLDNAQMTSQIAQINTVTGIQQLNQTMQRMAAQFDALQVMQ 107 Query: 82 ASSYIGKNI 90 ++ +G+++ Sbjct: 108 GAALVGRSV 116 >gi|327478808|gb|AEA82118.1| flagellar basal body rod modification protein [Pseudomonas stutzeri DSM 4166] Length = 221 Score = 42.0 bits (97), Expect = 0.025, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 5/61 (8%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78 S T ++ F+ L++ QIK+QDPT+P+ ++E + Q +V SQ++ M S L NN Sbjct: 27 SDATTMENNFISLMVAQIKYQDPTKPVDSTEFLNQFSVMSQVKSMENMTS-----LAQNN 81 Query: 79 L 79 L Sbjct: 82 L 82 >gi|238752867|ref|ZP_04614332.1| Basal-body rod modification protein [Yersinia rohdei ATCC 43380] gi|238708906|gb|EEQ01159.1| Basal-body rod modification protein [Yersinia rohdei ATCC 43380] Length = 218 Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 11/77 (14%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL------AQ 81 F+ LL+ QI++QDP P +E V+Q+A SQ VQ + +LLKSN + A Sbjct: 33 FMTLLVAQIQNQDPLNPTDGTEFVSQMAQLSQ----VQSTENMAKLLKSNTVQMEKMQAM 88 Query: 82 ASS-YIGKNITNADGSI 97 A++ +G+N+ G+I Sbjct: 89 ATANLVGQNVMVESGTI 105 >gi|113969605|ref|YP_733398.1| flagellar basal body rod modification protein [Shewanella sp. MR-4] gi|113884289|gb|ABI38341.1| flagellar hook capping protein [Shewanella sp. MR-4] Length = 256 Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 4/85 (4%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 P ++KS++ L Q+ F LL Q+ QDP +P+ + +AQ+A FS ++ ++N Sbjct: 44 PGNSVVPEAKSQQ-LTQEDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGISKLND 102 Query: 69 ---TLQELLKSNNLAQASSYIGKNI 90 L ++ S+ QAS +G+ + Sbjct: 103 EIVNLNSVMTSSQALQASGLVGRKV 127 >gi|261341495|ref|ZP_05969353.1| putative basal-body rod modification protein FlgD [Enterobacter cancerogenus ATCC 35316] gi|288316291|gb|EFC55229.1| putative basal-body rod modification protein FlgD [Enterobacter cancerogenus ATCC 35316] Length = 234 Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 9/80 (11%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---------LKSNN 78 F+KLL+ QI++QDP P +E V QLA +Q++ M +Q + L + N Sbjct: 35 FMKLLVAQIQNQDPLNPTDGTEYVGQLAQLTQVQSMENMTVGMQNIGVLMDNLQTLSTGN 94 Query: 79 LAQASSYIGKNITNADGSIS 98 L + + DGS S Sbjct: 95 LVGQKVMVQTDTLQTDGSTS 114 >gi|242278415|ref|YP_002990544.1| flagellar hook capping protein [Desulfovibrio salexigens DSM 2638] gi|242121309|gb|ACS79005.1| flagellar hook capping protein [Desulfovibrio salexigens DSM 2638] Length = 226 Score = 42.0 bits (97), Expect = 0.032, Method: Compositional matrix adjust. Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 10/112 (8%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS-NNLAQ 81 L Q FL LL TQ+++QDPT P + + Q+ ++ +++ V N L+ ++ + LA Sbjct: 30 LDQVDFLTLLTTQLQYQDPTNPTDNTAMINQMTNYAMLDEDVAQNENLEAIINQLDALAS 89 Query: 82 ASS--YIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 S+ IG+ + GS S V T +T+D + GI I + Sbjct: 90 LSTAGLIGEEVMAPGGSFS-------VEGGEATGVTIDLQDDASEVGINIYD 134 >gi|74101657|gb|AAZ99747.1| FlgDL [Aeromonas hydrophila] Length = 231 Score = 41.6 bits (96), Expect = 0.033, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 42/67 (62%), Gaps = 5/67 (7%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE----LLKSNNLAQAS 83 FL++++ QI++QDPT P+ ++ V QLA FS +E V+ LQ+ ++ + + Q++ Sbjct: 45 FLQMMVAQIQNQDPTNPLDGAQYVTQLAQFSMVE-GVESLKVLQQKSINMMDTQQVLQST 103 Query: 84 SYIGKNI 90 + I K + Sbjct: 104 ALIDKEV 110 >gi|34497158|ref|NP_901373.1| flagellar basal body rod modification protein [Chromobacterium violaceum ATCC 12472] gi|34103015|gb|AAQ59378.1| basal-body rod modification protein FlgD [Chromobacterium violaceum ATCC 12472] Length = 225 Score = 41.6 bits (96), Expect = 0.034, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 30/48 (62%) Query: 24 GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 G D F+ LL+ QI++Q P +P S+ V+QLA SQM+ + M LQ Sbjct: 35 GNDMFMTLLLAQIRNQSPLDPADPSQFVSQLAQMSQMQSTQDMLKQLQ 82 >gi|114562341|ref|YP_749854.1| flagellar basal body rod modification protein [Shewanella frigidimarina NCIMB 400] gi|114333634|gb|ABI71016.1| flagellar hook capping protein [Shewanella frigidimarina NCIMB 400] Length = 261 Score = 41.6 bits (96), Expect = 0.035, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 4/85 (4%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 P + +SK + L Q+ F LL Q+ QDP +P+ + +AQ+A FS ++ +N Sbjct: 49 PEESAIPESK-DQMLKQEDFFALLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGISNLND 107 Query: 69 ---TLQELLKSNNLAQASSYIGKNI 90 L ++ S+ QAS +G+ + Sbjct: 108 EILNLNTVMSSSQALQASGLVGRKV 132 >gi|291617019|ref|YP_003519761.1| FlgD [Pantoea ananatis LMG 20103] gi|291152049|gb|ADD76633.1| FlgD [Pantoea ananatis LMG 20103] gi|327393470|dbj|BAK10892.1| basal-body rod modification protein FlgD [Pantoea ananatis AJ13355] Length = 223 Score = 41.6 bits (96), Expect = 0.035, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 31/46 (67%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 Q+ FL +L+TQ+++QDPT PM S+ QLA + + ++N+TL Sbjct: 31 QNQFLTMLVTQLQNQDPTNPMDNSQLTTQLAQINTLSGIEKLNTTL 76 >gi|149927797|ref|ZP_01916048.1| Flagellar hook capping protein [Limnobacter sp. MED105] gi|149823419|gb|EDM82650.1| Flagellar hook capping protein [Limnobacter sp. MED105] Length = 223 Score = 41.6 bits (96), Expect = 0.037, Method: Compositional matrix adjust. Identities = 20/69 (28%), Positives = 42/69 (60%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q+ F+ LL+ Q+K+QDP PM ++ +Q+A + + +N+T++ + + +N Q Sbjct: 31 QERFMSLLVAQLKNQDPLAPMDNAQVTSQMAQLNTVTGINTLNATMEGVAASINANQTVQ 90 Query: 82 ASSYIGKNI 90 A+S +G+ + Sbjct: 91 ATSMLGRAV 99 >gi|123442785|ref|YP_001006762.1| flagellar basal body rod modification protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122089746|emb|CAL12599.1| basal-body rod modification protein FlgD [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 191 Score = 41.6 bits (96), Expect = 0.038, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 39/63 (61%), Gaps = 3/63 (4%) Query: 31 LLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQASSYIG 87 +L+ Q+K+QDPT PM+ +E QLA + + ++N+TL + + ++ QASS IG Sbjct: 1 MLVAQLKNQDPTNPMQNNELTTQLAQINTVSGIEKLNTTLGSISGQIDNSQSLQASSLIG 60 Query: 88 KNI 90 + + Sbjct: 61 RGV 63 >gi|291562026|emb|CBL40842.1| Flagellar hook capping protein [butyrate-producing bacterium SS3/4] Length = 189 Score = 41.6 bits (96), Expect = 0.039, Method: Compositional matrix adjust. Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 2/93 (2%) Query: 3 INTEVNPTQQEF--SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 +++ NP Q + S SK T+ ++F+KLL Q+ +QD T PM SE ++Q+ + + Sbjct: 7 VSSTANPYQAGVYSAGSNSKNTMDVNSFIKLLAAQLSNQDMTSPMDNSEMMSQMTNMAMV 66 Query: 61 EQSVQMNSTLQELLKSNNLAQASSYIGKNITNA 93 + M +L A S IG+ +T A Sbjct: 67 QSLTAMTESLNTSAAVTTQTYAGSLIGQEVTVA 99 >gi|220925889|ref|YP_002501191.1| flagellar hook capping protein [Methylobacterium nodulans ORS 2060] gi|219950496|gb|ACL60888.1| flagellar hook capping protein [Methylobacterium nodulans ORS 2060] Length = 228 Score = 41.6 bits (96), Expect = 0.039, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 30/47 (63%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74 FL LL TQ+++Q+P +P+ ++ QL F+ +EQ ++ N L LL Sbjct: 35 FLTLLTTQLRNQNPLDPLDTNQFTQQLVQFASVEQQLKTNDRLDSLL 81 >gi|255021353|ref|ZP_05293401.1| Flagellar basal-body rod modification protein FlgD [Acidithiobacillus caldus ATCC 51756] gi|254969216|gb|EET26730.1| Flagellar basal-body rod modification protein FlgD [Acidithiobacillus caldus ATCC 51756] Length = 231 Score = 41.6 bits (96), Expect = 0.040, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 3/67 (4%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK---SNNLAQASS 84 F LL+TQ+ +QDP P+ + AQLA FS + S+L L+ N QA+S Sbjct: 41 FYNLLVTQLTNQDPLNPLSNQDLSAQLAQFSVANGVQAIQSSLTGLMSQINQNQGLQAAS 100 Query: 85 YIGKNIT 91 IGK++T Sbjct: 101 LIGKSVT 107 >gi|332525067|ref|ZP_08401247.1| flagellar hook capping protein [Rubrivivax benzoatilyticus JA2] gi|332108356|gb|EGJ09580.1| flagellar hook capping protein [Rubrivivax benzoatilyticus JA2] Length = 213 Score = 41.2 bits (95), Expect = 0.046, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 9/92 (9%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 INT PT+ SK+ + D FLKLL+ Q+++QDP PM ++ +Q+A + + Sbjct: 10 INT---PTE---SKNAGTASASADRFLKLLVAQMQNQDPLNPMDNAQVTSQMAQINTVTG 63 Query: 63 SVQMNSTLQEL---LKSNNLAQASSYIGKNIT 91 ++N T+ L Q +S IG+++T Sbjct: 64 IEKLNETVTGLNSQFLQMQAMQGASLIGRDVT 95 >gi|296135674|ref|YP_003642916.1| flagellar hook capping protein [Thiomonas intermedia K12] gi|295795796|gb|ADG30586.1| flagellar hook capping protein [Thiomonas intermedia K12] Length = 232 Score = 41.2 bits (95), Expect = 0.049, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 9/79 (11%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS------QMEQSVQMNSTLQELLKSNNL 79 + F LL+TQ+ +QDP PM ++ AQLA FS M+QS+ +TL L Sbjct: 38 NTFYTLLVTQLTNQDPMNPMSNTDLSAQLAQFSTASGIQSMQQSM---ATLTAQLAQTQG 94 Query: 80 AQASSYIGKNITNADGSIS 98 QA++ +G+ + + SIS Sbjct: 95 LQAANLVGQTVVFDNNSIS 113 >gi|127512278|ref|YP_001093475.1| flagellar basal body rod modification protein [Shewanella loihica PV-4] gi|126637573|gb|ABO23216.1| flagellar hook capping protein [Shewanella loihica PV-4] Length = 260 Score = 41.2 bits (95), Expect = 0.049, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 4/84 (4%) Query: 11 QQEFSKSKSK-KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS- 68 Q+E S ++K + L Q+ F LL Q+ QDP +P+ + +AQ+A FS ++ ++N Sbjct: 48 QEESSIPEAKSQELTQEDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGITKLNEE 107 Query: 69 --TLQELLKSNNLAQASSYIGKNI 90 L ++ S+ QAS +G+ + Sbjct: 108 IVNLNTVMTSSQALQASGLVGQKV 131 >gi|301631990|ref|XP_002945074.1| PREDICTED: basal-body rod modification protein flgD-like [Xenopus (Silurana) tropicalis] Length = 222 Score = 41.2 bits (95), Expect = 0.051, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ---ELLKSNNLAQ 81 QD FLKLL+ Q+ +QDP PM ++ +Q+A + + Q+N ++Q E + Q Sbjct: 32 QDRFLKLLVAQLNNQDPMNPMDNAQMTSQMAQINTVTGIQQLNLSMQNMSEQFAAMQTLQ 91 Query: 82 ASSYIGKNI 90 + IG+++ Sbjct: 92 GTMMIGRSV 100 >gi|170737037|ref|YP_001778297.1| flagellar hook capping protein [Burkholderia cenocepacia MC0-3] gi|169819225|gb|ACA93807.1| flagellar hook capping protein [Burkholderia cenocepacia MC0-3] Length = 241 Score = 41.2 bits (95), Expect = 0.051, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 25/34 (73%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 F +LL+ Q+K+QDP PM+A++ V Q A SQ+E Sbjct: 33 FTRLLVAQVKNQDPLAPMEANQFVTQFAQMSQVE 66 >gi|294140183|ref|YP_003556161.1| basal-body rod modification protein FlgD [Shewanella violacea DSS12] gi|293326652|dbj|BAJ01383.1| basal-body rod modification protein FlgD [Shewanella violacea DSS12] Length = 235 Score = 41.2 bits (95), Expect = 0.054, Method: Compositional matrix adjust. Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 4/85 (4%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 P ++ ++ S+ L Q+ F LL Q+ QDP +P+ + +AQ+A FS ++ +N Sbjct: 23 PEEKSIPEANSQG-LSQEDFFSLLSQQLSMQDPFKPVDNDQMIAQMAAFSTVDGISNLND 81 Query: 69 ---TLQELLKSNNLAQASSYIGKNI 90 L ++ S+ QAS +G+ + Sbjct: 82 EIINLNTVMTSSQALQASGLVGQKV 106 >gi|71282499|ref|YP_268221.1| basal-body rod modification protein FlgD [Colwellia psychrerythraea 34H] gi|71148239|gb|AAZ28712.1| basal-body rod modification protein FlgD [Colwellia psychrerythraea 34H] Length = 256 Score = 40.8 bits (94), Expect = 0.056, Method: Compositional matrix adjust. Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 3/75 (4%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LK 75 S+ L Q F LL ++ +QDPT+P+ ++ ++Q+ FS + +N + + Sbjct: 52 SEGMLTQSDFFALLTKELANQDPTKPVDNNQMISQMTAFSTTDGVRTLNDSFGSFAGSMT 111 Query: 76 SNNLAQASSYIGKNI 90 S+ QASS +G+++ Sbjct: 112 SSQALQASSLVGRSV 126 >gi|295690743|ref|YP_003594436.1| flagellar hook capping protein [Caulobacter segnis ATCC 21756] gi|295432646|gb|ADG11818.1| flagellar hook capping protein [Caulobacter segnis ATCC 21756] Length = 242 Score = 40.8 bits (94), Expect = 0.061, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 3/67 (4%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN---NLAQASS 84 FLKLL TQ+K+QDP P ++ Q+ + +EQ + N L L+ N L + S Sbjct: 31 FLKLLTTQLKNQDPLSPTDTTQMTQQITQMTGVEQQLVTNDLLAALVGMNTGTGLTEGVS 90 Query: 85 YIGKNIT 91 IGK +T Sbjct: 91 MIGKQVT 97 >gi|120613058|ref|YP_972736.1| flagellar hook capping protein [Acidovorax citrulli AAC00-1] gi|120591522|gb|ABM34962.1| flagellar hook capping protein [Acidovorax citrulli AAC00-1] Length = 216 Score = 40.8 bits (94), Expect = 0.063, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 3/79 (3%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ--- 71 S S + QD FLKLL+ Q+ +QDP P+ ++ +Q+A + + Q+N ++Q Sbjct: 18 SNSATDPAAAQDRFLKLLVAQLNNQDPMNPLDNAQMTSQMAQINTVTGIQQLNLSMQTMA 77 Query: 72 ELLKSNNLAQASSYIGKNI 90 E + Q + IG+++ Sbjct: 78 EQFSTMQTLQGTMMIGRSV 96 >gi|224825776|ref|ZP_03698880.1| flagellar basal body rod modification protein [Lutiella nitroferrum 2002] gi|224602000|gb|EEG08179.1| flagellar basal body rod modification protein [Lutiella nitroferrum 2002] Length = 226 Score = 40.8 bits (94), Expect = 0.067, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 31/47 (65%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72 D F+ LL+ QIK+Q+P +P S+ V QL +QM+ S+ M S L++ Sbjct: 33 DMFMTLLMAQIKNQNPLDPADPSQFVNQLVQMNQMQTSLGMLSQLKD 79 >gi|226944491|ref|YP_002799564.1| flagellar basal body rod modification protein [Azotobacter vinelandii DJ] gi|226719418|gb|ACO78589.1| Flagellar hook capping protein [Azotobacter vinelandii DJ] Length = 222 Score = 40.4 bits (93), Expect = 0.073, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 40/66 (60%), Gaps = 3/66 (4%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQASS 84 F+ LLI Q+++QDP +PM+ +E +QLA + + ++N+TL+ + + QA++ Sbjct: 32 FMTLLIAQLQNQDPLKPMENAELTSQLAQINTLNGIEELNATLEGITGQIDETQALQAAA 91 Query: 85 YIGKNI 90 +G + Sbjct: 92 LVGHGV 97 >gi|270156915|ref|ZP_06185572.1| flagellar basal body rod modification protein FlgD [Legionella longbeachae D-4968] gi|289164658|ref|YP_003454796.1| Flagellar basal-body rod modification protein FlgD [Legionella longbeachae NSW150] gi|269988940|gb|EEZ95194.1| flagellar basal body rod modification protein FlgD [Legionella longbeachae D-4968] gi|288857831|emb|CBJ11677.1| Flagellar basal-body rod modification protein FlgD [Legionella longbeachae NSW150] Length = 224 Score = 40.4 bits (93), Expect = 0.082, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 3/74 (4%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKS 76 KK + FL ++ QI++QD + E ++QLA F+ + + M +LQ++ L+S Sbjct: 24 KKNFEEQVFLHSMVEQIENQDMMQRQINHEFLSQLAQFATHDGCIAMQESLQQMSTSLQS 83 Query: 77 NNLAQASSYIGKNI 90 N QAS+ +G+ + Sbjct: 84 NQALQASALVGRKV 97 >gi|124268255|ref|YP_001022259.1| flagellar hook capping protein [Methylibium petroleiphilum PM1] gi|124261030|gb|ABM96024.1| flagellar hook capping protein [Methylibium petroleiphilum PM1] Length = 217 Score = 40.4 bits (93), Expect = 0.086, Method: Compositional matrix adjust. Identities = 16/32 (50%), Positives = 24/32 (75%) Query: 24 GQDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55 G + FLKLL+TQ+K+QDP PM ++ +Q+A Sbjct: 28 GSERFLKLLVTQMKNQDPMNPMDNAQVTSQIA 59 >gi|188493605|ref|ZP_03000875.1| flagellar hook capping protein [Escherichia coli 53638] gi|188488804|gb|EDU63907.1| flagellar hook capping protein [Escherichia coli 53638] Length = 237 Score = 40.4 bits (93), Expect = 0.093, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 4/47 (8%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM----EQSVQMNS 68 D FL L + +I++Q+PT+P A+E + QL+ +Q+ E SVQ N+ Sbjct: 37 DTFLTLFVAEIQNQEPTDPTDATEYIDQLSSMAQVAMMEEMSVQANT 83 >gi|294339844|emb|CAZ88207.1| putative Basal-body rod modification protein flgD [Thiomonas sp. 3As] Length = 232 Score = 40.0 bits (92), Expect = 0.100, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 9/79 (11%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS------QMEQSVQMNSTLQELLKSNNL 79 + F LL+TQ+ +QDP PM ++ AQLA FS M+QS+ +TL L Sbjct: 38 NTFYTLLVTQLTNQDPMNPMSNTDLSAQLAQFSTASGIQSMQQSM---ATLTAQLAQTQG 94 Query: 80 AQASSYIGKNITNADGSIS 98 QA++ +G+ + + S+S Sbjct: 95 LQAANLVGQTVVFDNNSLS 113 >gi|254255086|ref|ZP_04948403.1| Flagellar hook capping protein [Burkholderia dolosa AUO158] gi|124899731|gb|EAY71574.1| Flagellar hook capping protein [Burkholderia dolosa AUO158] Length = 220 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 19/34 (55%), Positives = 23/34 (67%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 F LLI QI++QDP PM AS+ V Q A SQ+E Sbjct: 36 FTTLLIAQIRNQDPLAPMDASQFVNQFAQMSQVE 69 >gi|266623342|ref|ZP_06116277.1| flagellar hook capping protein [Clostridium hathewayi DSM 13479] gi|288864880|gb|EFC97178.1| flagellar hook capping protein [Clostridium hathewayi DSM 13479] Length = 205 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 7/81 (8%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78 S K + + FL L++ Q+K+QD P+ ++ V QLA S M+Q ++E+ + Sbjct: 63 SDKAVSMEDFLTLMVAQLKNQDFMNPVDDTQYVTQLAQISTMQQ-------MEEMAYNAK 115 Query: 79 LAQASSYIGKNITNADGSISG 99 +S +GK +T A +++G Sbjct: 116 STYVTSLVGKTVTAAKFTVAG 136 >gi|153840218|ref|ZP_01992885.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus AQ3810] gi|149746114|gb|EDM57244.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus AQ3810] Length = 59 Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust. Identities = 17/41 (41%), Positives = 28/41 (68%) Query: 31 LLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 L++ QI++QDP P+ +E V QLA FSQ++ + M+ +Q Sbjct: 1 LMVAQIQNQDPLNPLDGTEYVGQLAQFSQVQSTENMSKVMQ 41 >gi|50954408|ref|YP_061696.1| flagellar hook assembly protein [Leifsonia xyli subsp. xyli str. CTCB07] gi|50950890|gb|AAT88591.1| flagellar hook assembly protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 90 Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 3/44 (6%) Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKAS---EQVAQLAVFSQME 61 +T+G + F+ LL+ Q+++QDPT PM + +Q QLA+ M+ Sbjct: 27 QTMGAEQFMHLLVVQLQNQDPTSPMDTAQMVQQTTQLAMMRSMQ 70 >gi|319764538|ref|YP_004128475.1| flagellar hook capping protein [Alicycliphilus denitrificans BC] gi|330826754|ref|YP_004390057.1| flagellar hook capping protein [Alicycliphilus denitrificans K601] gi|317119099|gb|ADV01588.1| flagellar hook capping protein [Alicycliphilus denitrificans BC] gi|329312126|gb|AEB86541.1| flagellar hook capping protein [Alicycliphilus denitrificans K601] Length = 220 Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 16/122 (13%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ---ELLKSNNLAQ 81 QD FLKLL+ Q+ +QDP P+ ++ Q+A + + +N T+Q E + Q Sbjct: 32 QDRFLKLLVAQLNNQDPMNPLDNAQMTTQMAQINTVTGLQTLNLTMQTMAEQFSTMQQIQ 91 Query: 82 ASSYIGKNITN-------ADGS------ISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128 S IG+++ + ADG+ ++G ++V + VD+ ++ G R Sbjct: 92 GISLIGRSVLSEGDRMSFADGTGKGMFDLAGAATNVKVDIVTAGGVVVDSIDMGAQEGGR 151 Query: 129 IS 130 S Sbjct: 152 HS 153 >gi|260768783|ref|ZP_05877717.1| flagellar basal-body rod modification protein FlgD [Vibrio furnissii CIP 102972] gi|260616813|gb|EEX41998.1| flagellar basal-body rod modification protein FlgD [Vibrio furnissii CIP 102972] Length = 234 Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust. Identities = 16/43 (37%), Positives = 28/43 (65%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 F+ L++ Q+++QDP P ++ V QLA F+Q++ + M S L Sbjct: 37 FITLMVAQVQNQDPLNPTDGTQYVTQLAQFAQVQSTDNMVSIL 79 >gi|170725954|ref|YP_001759980.1| flagellar basal body rod modification protein [Shewanella woodyi ATCC 51908] gi|169811301|gb|ACA85885.1| flagellar hook capping protein [Shewanella woodyi ATCC 51908] Length = 270 Score = 39.3 bits (90), Expect = 0.21, Method: Compositional matrix adjust. Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 3/71 (4%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS---TLQELLKSNNL 79 L Q+ F LL Q+ QDP +P+ + +AQ+A FS ++ +N L ++ S+ Sbjct: 71 LTQEDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGINNLNDEIVNLNTVMTSSQA 130 Query: 80 AQASSYIGKNI 90 QAS +G+ + Sbjct: 131 LQASGLVGQKV 141 >gi|91792663|ref|YP_562314.1| flagellar basal body rod modification protein [Shewanella denitrificans OS217] gi|91714665|gb|ABE54591.1| flagellar hook capping protein [Shewanella denitrificans OS217] Length = 263 Score = 39.3 bits (90), Expect = 0.21, Method: Compositional matrix adjust. Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 4/85 (4%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 PT+ ++K ++L Q F LL Q+ QDP +P+ + + Q+A FS ++ ++N Sbjct: 51 PTESAIPEAK-DQSLTQKDFFALLSQQLSMQDPFKPVDNDQMIQQMASFSTVDGITKLNE 109 Query: 69 ---TLQELLKSNNLAQASSYIGKNI 90 L + S+ QAS +G+ + Sbjct: 110 EILNLTSVTSSSQALQASGLVGRKV 134 >gi|157147103|ref|YP_001454422.1| flagellar basal body rod modification protein [Citrobacter koseri ATCC BAA-895] gi|157084308|gb|ABV13986.1| hypothetical protein CKO_02880 [Citrobacter koseri ATCC BAA-895] Length = 227 Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust. Identities = 15/34 (44%), Positives = 25/34 (73%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 F++LL+ QI++QDP P +E V+QLA +Q++ Sbjct: 35 FMQLLVAQIQNQDPLNPTDGTEYVSQLAQLTQVQ 68 >gi|283834456|ref|ZP_06354197.1| basal-body rod modification protein FlgD [Citrobacter youngae ATCC 29220] gi|291070003|gb|EFE08112.1| basal-body rod modification protein FlgD [Citrobacter youngae ATCC 29220] Length = 295 Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 4/47 (8%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM----EQSVQMNS 68 D FL L + +I++QDPT+P + + QL+ +Q+ E SVQ N+ Sbjct: 70 DTFLTLFVAEIENQDPTDPTDPTAYIDQLSSMAQVAMMEEMSVQANT 116 >gi|315180487|gb|ADT87401.1| flagellar basal body rod modification protein D [Vibrio furnissii NCTC 11218] Length = 164 Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust. Identities = 16/43 (37%), Positives = 28/43 (65%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 F+ L++ Q+++QDP P ++ V QLA F+Q++ + M S L Sbjct: 37 FITLMVAQVQNQDPLNPTDGTQYVTQLAQFAQVQSTDNMVSIL 79 >gi|283784084|ref|YP_003363949.1| lateral flagellar rod protein [Citrobacter rodentium ICC168] gi|282947538|emb|CBG87090.1| lateral flagellar rod protein [Citrobacter rodentium ICC168] Length = 270 Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 4/49 (8%) Query: 24 GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM----EQSVQMNS 68 G + FL L + +I++QDPT+P ++ + QL+ +Q+ E SVQ N+ Sbjct: 63 GVETFLTLFVAEIQNQDPTDPADPTDYIDQLSSMAQVAMMEEMSVQANT 111 >gi|167567749|ref|ZP_02360665.1| flagellar basal body rod modification protein [Burkholderia oklahomensis EO147] gi|167574700|ref|ZP_02367574.1| flagellar basal body rod modification protein [Burkholderia oklahomensis C6786] Length = 223 Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 5/61 (8%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSY 85 D F KLL QI++Q+P EPM +S+ V QL + M+Q+ M + +L + NLA SS Sbjct: 35 DLFAKLLDAQIRNQNPLEPMDSSQFVTQLMM---MQQTQAMETV--AVLTNQNLATTSSM 89 Query: 86 I 86 + Sbjct: 90 L 90 >gi|114569240|ref|YP_755920.1| flagellar hook capping protein [Maricaulis maris MCS10] gi|114339702|gb|ABI64982.1| flagellar hook capping protein [Maricaulis maris MCS10] Length = 221 Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust. Identities = 17/37 (45%), Positives = 25/37 (67%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 FL LL Q+K+QDP P+ +++ V QL FS +EQ + Sbjct: 29 FLTLLTEQMKNQDPLNPLDSTQFVNQLVDFSSVEQQI 65 >gi|167948871|ref|ZP_02535945.1| flagellar basal body rod modification protein [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 113 Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust. Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 2/69 (2%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIG 87 F+ L++T++ HQDP +PM+ +E Q++ F+ + +N + L S +L ++ G Sbjct: 33 FMNLMVTELTHQDPFKPMENTELATQISQFAAVSGIDDLNKSFTGLSSSMHLRSGAT--G 90 Query: 88 KNITNADGS 96 + A G+ Sbjct: 91 RQFVGAPGA 99 >gi|157376217|ref|YP_001474817.1| flagellar basal body rod modification protein [Shewanella sediminis HAW-EB3] gi|157318591|gb|ABV37689.1| flagellar hook capping protein [Shewanella sediminis HAW-EB3] Length = 282 Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 12/92 (13%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS---TLQELLKSNNL 79 L Q+ F LL Q+ QDP +P+ + ++Q+A FS ++ +N L ++ S+ Sbjct: 71 LTQEDFFSLLSQQLSMQDPFKPVDNDQMISQMASFSTVDGIKNLNDEIVNLNSVMTSSQA 130 Query: 80 AQASSYIGKN---------ITNADGSISGVVN 102 QAS +G+ I+ D SI+G+++ Sbjct: 131 LQASGLVGQKVLIPSDTGYISAEDPSINGIIS 162 >gi|292489134|ref|YP_003532021.1| basal-body rod modification protein FlgD [Erwinia amylovora CFBP1430] gi|292900253|ref|YP_003539622.1| basal-body rod modification protein [Erwinia amylovora ATCC 49946] gi|291200101|emb|CBJ47227.1| basal-body rod modification protein [Erwinia amylovora ATCC 49946] gi|291554568|emb|CBA22182.1| Basal-body rod modification protein flgD [Erwinia amylovora CFBP1430] gi|312173292|emb|CBX81547.1| Basal-body rod modification protein flgD [Erwinia amylovora ATCC BAA-2158] Length = 226 Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust. Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 6/91 (6%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 +N P Q + S + + +F+ LLI Q+++QDPT PM ++ +QLA F+ Sbjct: 6 VNNTRGPGQVDMGSSAADLS---GSFMTLLIAQMQNQDPTNPMDNNQLTSQLAQFNTASG 62 Query: 63 SVQMNSTLQ---ELLKSNNLAQASSYIGKNI 90 ++N ++ +L A+S++G+ + Sbjct: 63 VEKLNDSVAIVGGMLVQMQEMGATSWVGREV 93 >gi|222112271|ref|YP_002554535.1| flagellar hook capping protein [Acidovorax ebreus TPSY] gi|221731715|gb|ACM34535.1| flagellar hook capping protein [Acidovorax ebreus TPSY] Length = 216 Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ---ELLKSNNLAQ 81 QD FLKLL+ Q+ +QDP P+ ++ Q+A + + +N T+Q E + Q Sbjct: 28 QDRFLKLLVAQLNNQDPMNPLDNAQMTTQMAQINTVTGIQTLNLTMQTMAEEFSTMQQIQ 87 Query: 82 ASSYIGKNI 90 S IG+++ Sbjct: 88 GISLIGRSV 96 >gi|121596116|ref|YP_988012.1| flagellar hook capping protein [Acidovorax sp. JS42] gi|120608196|gb|ABM43936.1| flagellar hook capping protein [Acidovorax sp. JS42] Length = 216 Score = 38.5 bits (88), Expect = 0.33, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ---ELLKSNNLAQ 81 QD FLKLL+ Q+ +QDP P+ ++ Q+A + + +N T+Q E + Q Sbjct: 28 QDRFLKLLVAQLNNQDPMNPLDNAQMTTQMAQINTVTGIQTLNLTMQTMAEEFSTMQQIQ 87 Query: 82 ASSYIGKNI 90 S IG+++ Sbjct: 88 GISLIGRSV 96 >gi|310764861|gb|ADP09811.1| Flagellar basal-body rod modification protein, FlgD [Erwinia sp. Ejp617] Length = 226 Score = 38.5 bits (88), Expect = 0.34, Method: Compositional matrix adjust. Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 6/91 (6%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 +N P Q + S + + +F+ LLI Q+++QDPT PM ++ +QLA F+ Sbjct: 6 VNNTRGPGQVDMGSSAADIS---GSFMTLLIAQMQNQDPTNPMDNNQLTSQLAQFNTAAG 62 Query: 63 SVQMNSTLQ---ELLKSNNLAQASSYIGKNI 90 ++N ++ +L A+S++G+ + Sbjct: 63 VEKLNDSVAIVGGMLVQMQEMGATSWVGREV 93 >gi|259907633|ref|YP_002647989.1| Flagellar basal-body rod modification protein, FlgD [Erwinia pyrifoliae Ep1/96] gi|224963255|emb|CAX54739.1| Flagellar basal-body rod modification protein, FlgD [Erwinia pyrifoliae Ep1/96] gi|283477475|emb|CAY73391.1| Basal-body rod modification protein flgD [Erwinia pyrifoliae DSM 12163] Length = 226 Score = 38.5 bits (88), Expect = 0.35, Method: Compositional matrix adjust. Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 6/91 (6%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 +N P Q + S + + +F+ LLI Q+++QDPT PM ++ +QLA F+ Sbjct: 6 VNNTRGPGQVDMGSSAADIS---GSFMTLLIAQMQNQDPTNPMDNNQLTSQLAQFNTAAG 62 Query: 63 SVQMNSTLQ---ELLKSNNLAQASSYIGKNI 90 ++N ++ +L A+S++G+ + Sbjct: 63 VEKLNDSVAIVGGMLVQMQEMGATSWVGREV 93 >gi|167623360|ref|YP_001673654.1| flagellar basal body rod modification protein [Shewanella halifaxensis HAW-EB4] gi|167353382|gb|ABZ75995.1| flagellar hook capping protein [Shewanella halifaxensis HAW-EB4] Length = 267 Score = 38.5 bits (88), Expect = 0.35, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 12/92 (13%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNL 79 L Q+ F LL Q+ QDP +P+ + + Q+A FS ++ ++N L L S+ Sbjct: 68 LSQEDFFSLLSQQLSMQDPFKPVDNDQMIQQMASFSTVDGISKLNEEIGNLNALTSSSQA 127 Query: 80 AQASSYIGK---------NITNADGSISGVVN 102 QAS +G+ +I+ D S+ G+++ Sbjct: 128 LQASGLVGQKVLIPSDTAHISAEDPSMKGIIS 159 >gi|85058010|ref|YP_453712.1| flagellar basal-body rod modification protein FlgD [Sodalis glossinidius str. 'morsitans'] gi|84778530|dbj|BAE73307.1| flagellar basal-body rod modification protein FlgD [Sodalis glossinidius str. 'morsitans'] Length = 269 Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 44/71 (61%), Gaps = 9/71 (12%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV---QMNSTLQELLKSNNLAQA 82 D FL++++ QIK+QDPT PM ++ +Q+A QM ++ ++N+T+ + N QA Sbjct: 72 DNFLQMMLAQIKNQDPTNPMDNNQLASQMA---QMHVALGVEKLNNTVLGMGNMVNSVQA 128 Query: 83 ---SSYIGKNI 90 S+++G+ + Sbjct: 129 VNLSNWVGRTV 139 >gi|305663892|ref|YP_003860180.1| AAA ATPase central domain protein [Ignisphaera aggregans DSM 17230] gi|304378461|gb|ADM28300.1| AAA ATPase central domain protein [Ignisphaera aggregans DSM 17230] Length = 480 Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust. Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 2/82 (2%) Query: 41 PTEP-MKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISG 99 P +P ++ ++A++ F ++ +S M L ++ ++ NL I I A+G + Sbjct: 145 PYDPSLRVLREIAEMVQFKKLSKS-DMRMVLNKICRAENLRCDEEAIDYIIERAEGDLRA 203 Query: 100 VVNAIQVSSTGLTAITVDNTEI 121 +N +Q G +T+D +I Sbjct: 204 AINDLQAVGEGFGEVTLDRAKI 225 >gi|323171062|gb|EFZ56711.1| flagellar hook capping family protein [Escherichia coli LT-68] Length = 234 Score = 38.1 bits (87), Expect = 0.42, Method: Compositional matrix adjust. Identities = 18/44 (40%), Positives = 31/44 (70%), Gaps = 1/44 (2%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ-SVQMNS 68 DAFL L + +I++QDPT+ + +Q++ +A + ME+ SVQ N+ Sbjct: 37 DAFLTLFVAEIQNQDPTDATEYIDQLSSMAQVAMMEEMSVQANT 80 >gi|157961170|ref|YP_001501204.1| flagellar basal body rod modification protein [Shewanella pealeana ATCC 700345] gi|157846170|gb|ABV86669.1| flagellar hook capping protein [Shewanella pealeana ATCC 700345] Length = 270 Score = 38.1 bits (87), Expect = 0.42, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 12/92 (13%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS---TLQELLKSNNL 79 L Q+ F LL Q+ QDP +P++ + + Q+A FS ++ ++N L L S+ Sbjct: 71 LTQEDFFSLLSQQLSMQDPFKPVENDQMIQQMASFSTVDGISKLNEEIINLNALTSSSQA 130 Query: 80 AQASSYIGK---------NITNADGSISGVVN 102 QAS +G+ +I+ D S+ G+++ Sbjct: 131 LQASGLVGQKVLIPSDTAHISAEDPSMKGIIS 162 >gi|146305249|ref|YP_001185714.1| flagellar basal body rod modification protein [Pseudomonas mendocina ymp] gi|145573450|gb|ABP82982.1| flagellar hook capping protein [Pseudomonas mendocina ymp] Length = 225 Score = 38.1 bits (87), Expect = 0.45, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 4/50 (8%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77 FL L++ QI++QDPT+P+ ++E + Q A SQ++ M S L KSN Sbjct: 36 FLTLMVAQIQNQDPTKPVDSTEFLNQFAAMSQVKSLENMAS----LSKSN 81 >gi|330501136|ref|YP_004378005.1| flagellar basal body rod modification protein [Pseudomonas mendocina NK-01] gi|328915422|gb|AEB56253.1| flagellar basal body rod modification protein [Pseudomonas mendocina NK-01] Length = 225 Score = 38.1 bits (87), Expect = 0.46, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 4/50 (8%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77 FL L++ QI++QDPT+P+ ++E + Q A SQ++ M S L KSN Sbjct: 36 FLTLMVAQIQNQDPTKPVDSTEFLNQFAAMSQVKSLENMAS----LSKSN 81 >gi|212634347|ref|YP_002310872.1| flagellar basal body rod modification protein [Shewanella piezotolerans WP3] gi|212555831|gb|ACJ28285.1| Flagellar hook capping protein [Shewanella piezotolerans WP3] Length = 267 Score = 37.7 bits (86), Expect = 0.48, Method: Compositional matrix adjust. Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 3/71 (4%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS---TLQELLKSNNL 79 L Q+ F LL Q+ QDP +P+ + + Q+A FS ++ ++N L L S+ Sbjct: 68 LSQEDFFSLLSQQLSMQDPFKPVDNDQMIQQMASFSTVDGISKLNEEIVNLNALTTSSQA 127 Query: 80 AQASSYIGKNI 90 QAS +G+ + Sbjct: 128 LQASGLVGQKV 138 >gi|167614836|ref|ZP_02383471.1| flagellar basal body rod modification protein [Burkholderia thailandensis Bt4] gi|257141421|ref|ZP_05589683.1| flagellar basal body rod modification protein [Burkholderia thailandensis E264] Length = 241 Score = 37.7 bits (86), Expect = 0.48, Method: Compositional matrix adjust. Identities = 18/36 (50%), Positives = 24/36 (66%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 D F KLL QI++Q+P EPM AS+ V Q+ + Q E Sbjct: 44 DLFAKLLAAQIQNQNPLEPMDASQFVTQIMMGQQTE 79 >gi|167576661|ref|ZP_02369535.1| flagellar basal body rod modification protein [Burkholderia thailandensis TXDOH] Length = 241 Score = 37.7 bits (86), Expect = 0.48, Method: Compositional matrix adjust. Identities = 18/36 (50%), Positives = 24/36 (66%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 D F KLL QI++Q+P EPM AS+ V Q+ + Q E Sbjct: 44 DLFAKLLAAQIQNQNPLEPMDASQFVTQIMMGQQTE 79 >gi|83716169|ref|YP_438388.1| flagellar basal body rod modification protein [Burkholderia thailandensis E264] gi|83649994|gb|ABC34058.1| basal-body rod modification protein FlgD, putative [Burkholderia thailandensis E264] Length = 231 Score = 37.7 bits (86), Expect = 0.49, Method: Compositional matrix adjust. Identities = 18/36 (50%), Positives = 24/36 (66%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 D F KLL QI++Q+P EPM AS+ V Q+ + Q E Sbjct: 34 DLFAKLLAAQIQNQNPLEPMDASQFVTQIMMGQQTE 69 >gi|254519416|ref|ZP_05131472.1| flagellar hook assembly protein FlgD [Clostridium sp. 7_2_43FAA] gi|226913165|gb|EEH98366.1| flagellar hook assembly protein FlgD [Clostridium sp. 7_2_43FAA] Length = 232 Score = 37.7 bits (86), Expect = 0.49, Method: Compositional matrix adjust. Identities = 27/105 (25%), Positives = 57/105 (54%), Gaps = 13/105 (12%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77 K + + ++AFL +L ++ + DP +++ V Q+A F+ MEQ +N+T+ Sbjct: 22 KPGQDMDKNAFLTILSAELSNMDPMGNNDSTQYVTQMAQFASMEQMTNLNTTMSSYAH-- 79 Query: 78 NLAQASSYIGKNIT----NADGS-ISGVVNAIQVSSTGLTAITVD 117 +S +GK +T +++G +G+V ++ S++ T I+V+ Sbjct: 80 -----NSMVGKGVTLKSVDSEGKPYTGIVKSV-TSTSAKTTISVE 118 >gi|237752019|ref|ZP_04582499.1| flagellar biosynthesis protein [Helicobacter winghamensis ATCC BAA-430] gi|229376586|gb|EEO26677.1| flagellar biosynthesis protein [Helicobacter winghamensis ATCC BAA-430] Length = 262 Score = 37.7 bits (86), Expect = 0.52, Method: Compositional matrix adjust. Identities = 15/45 (33%), Positives = 29/45 (64%) Query: 29 LKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73 ++L + Q+K+QDPT PM+ E + Q A +Q+E +M ++++ Sbjct: 1 MRLFLEQLKNQDPTAPMETQEILTQTAQLTQVEAQEKMKKAMEDM 45 >gi|126443508|ref|YP_001061245.1| flagellar basal body rod modification protein [Burkholderia pseudomallei 668] gi|134280664|ref|ZP_01767374.1| basal-body rod modification protein FlgD, putative [Burkholderia pseudomallei 305] gi|167725929|ref|ZP_02409165.1| flagellar basal body rod modification protein [Burkholderia pseudomallei DM98] gi|167905089|ref|ZP_02492294.1| flagellar basal body rod modification protein [Burkholderia pseudomallei NCTC 13177] gi|254299687|ref|ZP_04967136.1| LfgD [Burkholderia pseudomallei 406e] gi|126222999|gb|ABN86504.1| flagellar hook capping protein [Burkholderia pseudomallei 668] gi|134247686|gb|EBA47770.1| basal-body rod modification protein FlgD, putative [Burkholderia pseudomallei 305] gi|157809654|gb|EDO86824.1| LfgD [Burkholderia pseudomallei 406e] Length = 241 Score = 37.7 bits (86), Expect = 0.57, Method: Compositional matrix adjust. Identities = 18/36 (50%), Positives = 24/36 (66%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 D F KLL QI++Q+P EPM AS+ V Q+ + Q E Sbjct: 44 DLFAKLLAAQIQNQNPLEPMDASQFVTQIMMGQQTE 79 >gi|125657217|gb|ABN48705.1| flagellar hook capping protein [Burkholderia pseudomallei] Length = 231 Score = 37.7 bits (86), Expect = 0.58, Method: Compositional matrix adjust. Identities = 18/36 (50%), Positives = 24/36 (66%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 D F KLL QI++Q+P EPM AS+ V Q+ + Q E Sbjct: 34 DLFAKLLAAQIQNQNPLEPMDASQFVTQIMMGQQTE 69 >gi|302382559|ref|YP_003818382.1| flagellar hook capping protein [Brevundimonas subvibrioides ATCC 15264] gi|302193187|gb|ADL00759.1| flagellar hook capping protein [Brevundimonas subvibrioides ATCC 15264] Length = 222 Score = 37.7 bits (86), Expect = 0.59, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 3/69 (4%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL---QELLKSNNLAQA 82 + FL LL +Q+K+QDP P+ +++ QL S +EQ + N L + L A Sbjct: 27 ETFLSLLTSQLKNQDPLSPLDSNQFTQQLTQMSGVEQQLMTNDLLTSLLAAQQGGGLGGA 86 Query: 83 SSYIGKNIT 91 ++YIGK+ T Sbjct: 87 ANYIGKDAT 95 >gi|171059413|ref|YP_001791762.1| flagellar hook capping protein [Leptothrix cholodnii SP-6] gi|170776858|gb|ACB34997.1| flagellar hook capping protein [Leptothrix cholodnii SP-6] Length = 224 Score = 37.4 bits (85), Expect = 0.65, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 33/51 (64%), Gaps = 6/51 (11%) Query: 26 DAFLKLLITQIKHQDPTEPM---KASEQVAQLAVFSQMEQSVQMNSTLQEL 73 D FLKLL+ Q+++QDP PM + + Q+AQ+ S +E ++N ++Q + Sbjct: 34 DRFLKLLVAQMQNQDPLSPMDNAQVTSQMAQINTVSGIE---KVNESIQAM 81 >gi|16125153|ref|NP_419717.1| flagellar hook assembly protein FlgD [Caulobacter crescentus CB15] gi|221233883|ref|YP_002516319.1| basal-body rod modification protein FlgD [Caulobacter crescentus NA1000] gi|3493242|gb|AAC33328.1| putative scaffolding protein [Caulobacter crescentus CB15] gi|13422165|gb|AAK22885.1| flagellar hook assembly protein FlgD, putative [Caulobacter crescentus CB15] gi|220963055|gb|ACL94411.1| Basal-body rod modification protein FlgD [Caulobacter crescentus NA1000] Length = 227 Score = 37.4 bits (85), Expect = 0.71, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 3/69 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN---NLAQ 81 ++ FL+LL TQ+K+QDP P ++ Q+ + +EQ + N L L+ N L++ Sbjct: 28 KETFLQLLTTQLKNQDPLSPTDTTQMTQQITQMTGVEQQLVTNDLLAALVGMNTGTGLSE 87 Query: 82 ASSYIGKNI 90 + IGK + Sbjct: 88 GVAMIGKQV 96 >gi|260222466|emb|CBA32058.1| hypothetical protein Csp_D30220 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 184 Score = 37.4 bits (85), Expect = 0.78, Method: Compositional matrix adjust. Identities = 20/73 (27%), Positives = 41/73 (56%), Gaps = 3/73 (4%) Query: 29 LKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ---ELLKSNNLAQASSY 85 +KLL+ Q+ +QDP PM ++ +Q+A + + ++N+T++ E S + Q +S Sbjct: 1 MKLLVAQLNNQDPMNPMDNAQMTSQIAQINTVSGIQELNATMKSMAEQFTSMQVLQGASM 60 Query: 86 IGKNITNADGSIS 98 +G + G++S Sbjct: 61 VGHGVLVESGTLS 73 >gi|289809013|ref|ZP_06539642.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 43 Score = 37.4 bits (85), Expect = 0.80, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 29/39 (74%), Gaps = 3/39 (7%) Query: 27 AFLKLLITQIKHQDPTEPMKASE---QVAQLAVFSQMEQ 62 +FL LL+ Q+K+QDPT P++ +E Q+AQ++ S +E+ Sbjct: 2 SFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGIEK 40 >gi|94968674|ref|YP_590722.1| putative basal-body rod modification protein FlgD [Candidatus Koribacter versatilis Ellin345] gi|94550724|gb|ABF40648.1| putative basal-body rod modification protein FlgD [Candidatus Koribacter versatilis Ellin345] Length = 92 Score = 37.4 bits (85), Expect = 0.80, Method: Compositional matrix adjust. Identities = 15/34 (44%), Positives = 23/34 (67%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 F +LL+ Q+K QDPT PM S+ V+QL + ++ Sbjct: 30 FAQLLVAQLKSQDPTSPMDPSQLVSQLVGLNTLD 63 >gi|238782791|ref|ZP_04626820.1| Flagellar hook capping protein [Yersinia bercovieri ATCC 43970] gi|238716214|gb|EEQ08197.1| Flagellar hook capping protein [Yersinia bercovieri ATCC 43970] Length = 187 Score = 37.0 bits (84), Expect = 0.83, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 3/58 (5%) Query: 36 IKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE---LLKSNNLAQASSYIGKNI 90 +++QDPT PM ++ +QLA F+ Q+NSTL L+ S A+ ++G+N+ Sbjct: 1 MQNQDPTNPMDNNQLTSQLAQFNTASGVQQLNSTLNSVGTLVTSMQQMNAAEWVGRNV 58 >gi|39934379|ref|NP_946655.1| flagellar hook capping protein [Rhodopseudomonas palustris CGA009] gi|192289902|ref|YP_001990507.1| flagellar hook capping protein [Rhodopseudomonas palustris TIE-1] gi|39648228|emb|CAE26747.1| possible flagellar basal-body rod modification protein FlgD [Rhodopseudomonas palustris CGA009] gi|192283651|gb|ACF00032.1| flagellar hook capping protein [Rhodopseudomonas palustris TIE-1] Length = 237 Score = 37.0 bits (84), Expect = 0.86, Method: Compositional matrix adjust. Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 12/96 (12%) Query: 37 KHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQAS---SYIGKNITNA 93 K+Q+PT+P+ ++ QL F+ +EQ ++ N +L L++ AQA+ S +G N Sbjct: 50 KNQNPTDPLDTNQFTQQLVQFAGIEQQLKTNDSLSSLVQLQTTAQATQAMSLVGAN---- 105 Query: 94 DGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129 +V+ +V T AI +T+ P++ + I Sbjct: 106 -----AIVDGSKVQMTKGNAIWSLSTDKPVSAQVSI 136 >gi|325295416|ref|YP_004281930.1| flagellar hook capping protein [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065864|gb|ADY73871.1| flagellar hook capping protein [Desulfurobacterium thermolithotrophum DSM 11699] Length = 219 Score = 37.0 bits (84), Expect = 0.87, Method: Compositional matrix adjust. Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 10/97 (10%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASE------QVAQLAVFSQMEQSVQMNSTLQELLKS 76 + Q+ FLK+L+ I+ QDP SE ++ +L V + E ++Q T L+S Sbjct: 30 MSQEDFLKVLLADIQWQDPLNAKDISEFINNAVKLQELEVLNSFESNIQ---TFVSTLQS 86 Query: 77 NNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTA 113 +L AS++IGK + +G+ + V N +S L++ Sbjct: 87 QSLFFASNFIGK-LVEYEGNQTYVQNGTGYASFSLSS 122 >gi|192289141|ref|YP_001989746.1| flagellar hook capping protein [Rhodopseudomonas palustris TIE-1] gi|192282890|gb|ACE99270.1| flagellar hook capping protein [Rhodopseudomonas palustris TIE-1] Length = 222 Score = 37.0 bits (84), Expect = 0.92, Method: Compositional matrix adjust. Identities = 15/49 (30%), Positives = 29/49 (59%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 FL LLI+++++QDP ++ + QL ++ Q ++NS++ L S Sbjct: 33 FLSLLISELQNQDPLNATSTTDFINQLTSYANFSQQQEINSSMTSLANS 81 >gi|239628986|ref|ZP_04672017.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519132|gb|EEQ58998.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 213 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 7/72 (9%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIG 87 FL L++ Q+K+QD P+ ++ V QLA S M+Q QM + +S +G Sbjct: 78 FLTLMVAQLKNQDFMNPVDDTQYVTQLAQISTMQQMEQMAYNAKSTY-------VTSLVG 130 Query: 88 KNITNADGSISG 99 K ++ A ++SG Sbjct: 131 KYVSAAKFTVSG 142 >gi|439980|gb|AAA73466.1| unknown [Treponema phagedenis] Length = 97 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 8/65 (12%) Query: 44 PMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL---AQASSYIGKNITNADGSI--S 98 PM+ ++ VAQ+A F+ +E QM + Q K NNL ++A + +GK + DGSI S Sbjct: 3 PMEDTQFVAQMAQFTSLE---QMTNVSQSFEKLNNLLSGSEAVNAVGKQVNIEDGSIKVS 59 Query: 99 GVVNA 103 GV+ A Sbjct: 60 GVITA 64 >gi|53713059|ref|YP_099051.1| hypothetical protein BF1770 [Bacteroides fragilis YCH46] gi|52215924|dbj|BAD48517.1| conserved hypothetical protein [Bacteroides fragilis YCH46] Length = 386 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 6/98 (6%) Query: 7 VNPTQQEFSKSK--SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 +N + +F KS + K G DAF K + DP P+ + F++++ Sbjct: 268 LNKIETDFKKSLNLAYKIFGNDAFRK----RYSETDPRNPINKAYFEVITVTFAELDDQA 323 Query: 65 QMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVN 102 N T++ + +NL QA +G+ ++ G+ V N Sbjct: 324 HDNLTVKAPILKHNLIQAMGTLGRYLSQGTGTTDSVFN 361 >gi|256420019|ref|YP_003120672.1| TonB-dependent receptor plug [Chitinophaga pinensis DSM 2588] gi|256034927|gb|ACU58471.1| TonB-dependent receptor plug [Chitinophaga pinensis DSM 2588] Length = 1109 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 5/62 (8%) Query: 11 QQEFSK--SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 Q + SK S ++TL QD +LKLL K+ T+P+K ++Q + +FS+ V N Sbjct: 351 QTDISKAISNRQRTLTQDEYLKLLYETYKN---TDPIKWTDQAIKSDLFSKFSYRVNGND 407 Query: 69 TL 70 T+ Sbjct: 408 TI 409 >gi|229172399|ref|ZP_04299958.1| Flagellar hook assembly protein [Bacillus cereus MM3] gi|228610870|gb|EEK68133.1| Flagellar hook assembly protein [Bacillus cereus MM3] Length = 195 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 3/71 (4%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASE---QVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79 + +D FLKL + + QDP M ++ Q AQL++ Q++ + LQ + S L Sbjct: 52 MNKDDFLKLFLASFQQQDPFNAMDTNQMMNQTAQLSLMEQVQNMTKAVDKLQATMYSTAL 111 Query: 80 AQASSYIGKNI 90 ++GK + Sbjct: 112 DGGMKFLGKYV 122 >gi|39933721|ref|NP_945997.1| basal-body rod modification protein flgD [Rhodopseudomonas palustris CGA009] gi|39647568|emb|CAE26088.1| possible basal-body rod modification protein flgD [Rhodopseudomonas palustris CGA009] Length = 265 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 15/49 (30%), Positives = 29/49 (59%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 FL LLI+++++QDP ++ + QL ++ Q ++NS++ L S Sbjct: 76 FLSLLISELQNQDPLNATSTTDFINQLTSYANFSQQQEINSSMTSLANS 124 >gi|88858144|ref|ZP_01132786.1| flagellar basal body rod modification protein [Pseudoalteromonas tunicata D2] gi|88819761|gb|EAR29574.1| flagellar basal body rod modification protein [Pseudoalteromonas tunicata D2] Length = 240 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 3/71 (4%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNL 79 L Q F L+ Q+ QDP P +AQ+ S E M + + + SN Sbjct: 34 LSQSDFFTLMTKQLSMQDPMNPTDNEAMMAQMTNMSIAEGVSNMATKFDQFAVSMTSNQA 93 Query: 80 AQASSYIGKNI 90 QASS +G+N+ Sbjct: 94 LQASSLVGRNV 104 >gi|59889779|emb|CAH19135.1| Lateral flagellar rod protein (FlgD-like) [Escherichia coli] gi|284920043|emb|CBG33100.1| lateral flagellar rod protein (FlgD-like) [Escherichia coli 042] Length = 234 Score = 36.2 bits (82), Expect = 1.8, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 30/44 (68%), Gaps = 1/44 (2%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ-SVQMNS 68 D FL L + +I++QDPT+ + +Q++ +A + ME+ SVQ N+ Sbjct: 37 DTFLTLFVAEIQNQDPTDATEYIDQLSSMAQVAMMEEMSVQANT 80 >gi|313681186|ref|YP_004058924.1| flagellar hook capping protein [Sulfuricurvum kujiense DSM 16994] gi|313154046|gb|ADR32724.1| flagellar hook capping protein [Sulfuricurvum kujiense DSM 16994] Length = 224 Score = 35.8 bits (81), Expect = 2.3, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 37/57 (64%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 K +LG+D FLKLL+ ++K+QDPT PM + + ++Q + + +E + N L+ L S Sbjct: 27 KSSLGKDDFLKLLLLELKYQDPTSPMDSEKILSQTSQLATLESTENTNKALETLAAS 83 >gi|228994536|ref|ZP_04154377.1| Polysaccharide deacetylase [Bacillus pseudomycoides DSM 12442] gi|228765215|gb|EEM13928.1| Polysaccharide deacetylase [Bacillus pseudomycoides DSM 12442] Length = 242 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 3/112 (2%) Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQ-DPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 +F S +K + Q+ ++L Q K + T P K + QV ++A + + Q + Sbjct: 3 QFFTSPAKGVMNQENSVQLASEQTKGEMKKTAPDKYNGQVRKVAYLTFDDGPSQFQKEIL 62 Query: 72 ELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPI 123 ++LKSNN+ IG NI S+ +VN + G+ ++T DN ++ I Sbjct: 63 DILKSNNIKGTFFMIGGNIPAHKESVKRLVN--EGHYPGVHSMTHDNKKLYI 112 >gi|115522803|ref|YP_779714.1| flagellar hook capping protein [Rhodopseudomonas palustris BisA53] gi|115516750|gb|ABJ04734.1| flagellar hook capping protein [Rhodopseudomonas palustris BisA53] Length = 221 Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust. Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 11/71 (15%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ-------SVQMNSTLQELLKSNNLA 80 FL LL+ ++++Q+P +P ++ +QL ++ EQ ++++ LL N Sbjct: 32 FLTLLVAELQNQNPLDPTSTTDFTSQLMSYASFEQQTALNSNLSSLSTSFNSLLTLN--- 88 Query: 81 QASSYIGKNIT 91 +S+YIG+ +T Sbjct: 89 -SSNYIGQTVT 98 >gi|188997540|ref|YP_001931791.1| flagellar hook capping protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188932607|gb|ACD67237.1| flagellar hook capping protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 218 Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 5/71 (7%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME--QSVQ-MNSTLQELLKSNNL 79 + Q+ FLK+L+ +K QDP S+ + QME S+Q + TL +N++ Sbjct: 30 MSQNDFLKVLLADLKWQDPMNAKDISDFIDNSVKLRQMESLDSIQKLVDTLSTF--TNSI 87 Query: 80 AQASSYIGKNI 90 ASS IGK + Sbjct: 88 VNASSMIGKKV 98 >gi|71280743|ref|YP_270181.1| RND family efflux transporter MFP subunit [Colwellia psychrerythraea 34H] gi|71146483|gb|AAZ26956.1| efflux transporter, RND family, MFP subunit subfamily [Colwellia psychrerythraea 34H] Length = 421 Score = 34.7 bits (78), Expect = 4.1, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 54/99 (54%), Gaps = 14/99 (14%) Query: 1 MEINTEVNPTQQEFSKSKS---KKTLGQDAFLKL---LITQIKHQDPTEPMKASEQVAQL 54 +E++ V Q++F++ K+ KK + Q AF ++ L QIK+++ + + E + Q Sbjct: 149 IELDFSVLRLQKDFNRHKALIEKKIISQQAFERVEDELAFQIKYRETVKESQEKEAILQS 208 Query: 55 AVFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNA 93 +Q+EQS+Q TLQ +NLA + S + K I A Sbjct: 209 QQLAQLEQSIQ---TLQ-----SNLAISRSSLDKLIIRA 239 >gi|167647108|ref|YP_001684771.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caulobacter sp. K31] gi|167349538|gb|ABZ72273.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caulobacter sp. K31] Length = 435 Score = 34.7 bits (78), Expect = 4.9, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 8/104 (7%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMK------ASEQVAQLAVFSQMEQSVQMNST 69 + S++ G A LK+++T + P P+K A++ + A + E SVQ+ + Sbjct: 311 RPSSEEGDGDQAGLKIVLTD--NPKPPAPLKVSPTLRAAQASTKPAKKAAGEWSVQVGAF 368 Query: 70 LQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTA 113 + L L+ S K ++NA+G++ G A + G+TA Sbjct: 369 KSKALAREQLSLVRSRFAKVVSNAEGAVEGAEGAFRAQFQGMTA 412 >gi|313905133|ref|ZP_07838502.1| flagellar hook capping protein [Eubacterium cellulosolvens 6] gi|313470036|gb|EFR65369.1| flagellar hook capping protein [Eubacterium cellulosolvens 6] Length = 176 Score = 34.3 bits (77), Expect = 5.2, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 51/108 (47%), Gaps = 9/108 (8%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79 K TL ++ KLL Q+ +QD + PM S+ + Q+ SQM VQ + L E KS Sbjct: 30 KNTLSITSYFKLLAAQLANQDMSNPMSTSDMMNQM---SQMAM-VQSLTALTESTKSATS 85 Query: 80 AQASSY----IGKNITNADGSISGVVNAIQVSSTGLTAITVD-NTEIP 122 SY IGK +T S + +Q S T ++V+ N E P Sbjct: 86 MSQQSYAAGMIGKEVTYNGKSYTSNGTLVQAGSRTGTIVSVNFNGESP 133 >gi|299131956|ref|ZP_07025151.1| flagellar hook capping protein [Afipia sp. 1NLS2] gi|298592093|gb|EFI52293.1| flagellar hook capping protein [Afipia sp. 1NLS2] Length = 245 Score = 34.3 bits (77), Expect = 5.9, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 4/60 (6%) Query: 40 DPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQASSYIGKNITNADGS 96 +P +P+ ++ AQL F+Q+EQ ++ N S+L L K+ QA S++G+ I+ DGS Sbjct: 56 NPLDPLDTNQFTAQLVQFAQVEQQLKANDQLSSLVALQKTAQSTQALSFVGQTIS-VDGS 114 >gi|162147458|ref|YP_001601919.1| basal-body rod modification protein flgD [Gluconacetobacter diazotrophicus PAl 5] gi|209545567|ref|YP_002277796.1| flagellar hook capping protein [Gluconacetobacter diazotrophicus PAl 5] gi|161786035|emb|CAP55617.1| putative basal-body rod modification protein flgD [Gluconacetobacter diazotrophicus PAl 5] gi|209533244|gb|ACI53181.1| flagellar hook capping protein [Gluconacetobacter diazotrophicus PAl 5] Length = 258 Score = 34.3 bits (77), Expect = 6.0, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%) Query: 40 DPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ---ASSYIGKNIT 91 DP+ PM + +LA F+ +EQ VQ N+ L L+ N +Q +S +GK T Sbjct: 67 DPSSPMSSDTFTQELAQFAGVEQQVQTNTNLSTLISLNEESQLNSDASLVGKTAT 121 >gi|86751225|ref|YP_487721.1| flagellar hook capping protein [Rhodopseudomonas palustris HaA2] gi|86574253|gb|ABD08810.1| Flagellar hook capping protein [Rhodopseudomonas palustris HaA2] Length = 233 Score = 33.9 bits (76), Expect = 7.7, Method: Compositional matrix adjust. Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 12/93 (12%) Query: 40 DPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA---QASSYIGKNITNADGS 96 +P EP+ ++ QL F+ +EQ ++ N TL LLK + A QA ++IG Sbjct: 50 NPLEPLDTNQFTQQLVQFAGVEQQLKTNETLSSLLKMQSTAQTTQAMNFIGA-------- 101 Query: 97 ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129 + VV+ + G TA +T+ P+T + + Sbjct: 102 -TAVVDGSKSHYDGKTAGWTLSTDKPVTAQVSV 133 >gi|225850268|ref|YP_002730502.1| flagellar hook capping protein FlgD [Persephonella marina EX-H1] gi|225645795|gb|ACO03981.1| flagellar hook capping protein FlgD [Persephonella marina EX-H1] Length = 215 Score = 33.9 bits (76), Expect = 7.8, Method: Compositional matrix adjust. Identities = 19/69 (27%), Positives = 42/69 (60%), Gaps = 9/69 (13%) Query: 28 FLKLLITQIKHQDP------TEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ 81 FLK+L+ ++ QDP T+ ++ + ++ ++ V + +++V++ L+E ++N+L Sbjct: 31 FLKVLLADLQWQDPLQANDITDFIQNTVKLREMEVLNSFQETVEL---LKETNEANSLLY 87 Query: 82 ASSYIGKNI 90 AS IGK + Sbjct: 88 ASGLIGKKV 96 >gi|271499620|ref|YP_003332645.1| mechanosensitive ion channel protein MscS [Dickeya dadantii Ech586] gi|270343175|gb|ACZ75940.1| MscS Mechanosensitive ion channel [Dickeya dadantii Ech586] Length = 1137 Score = 33.9 bits (76), Expect = 8.3, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 10/79 (12%) Query: 32 LITQIKHQDPT-EPMKASEQVA----QLAVFSQMEQ---SVQMNSTLQELLKSNNLAQAS 83 L TQ+ DP+ EP++ S+QV Q+ V QMEQ S+++N+TLQ+LL+ A+ Sbjct: 199 LRTQLSGLDPSQEPLRPSQQVLLQAEQVLVSLQMEQQRKSLEVNTTLQDLLQKQRDYTAA 258 Query: 84 SYIGKNITNADGSISGVVN 102 IG+ + + ++ GV+N Sbjct: 259 Q-IGQ-LEHMVQTLQGVIN 275 >gi|229000969|ref|ZP_04160424.1| Polysaccharide deacetylase [Bacillus mycoides Rock3-17] gi|228758786|gb|EEM07875.1| Polysaccharide deacetylase [Bacillus mycoides Rock3-17] Length = 265 Score = 33.9 bits (76), Expect = 8.7, Method: Compositional matrix adjust. Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 3/110 (2%) Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQ-DPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 +F S +K + Q+ ++L Q K + T P K + +V ++A + + Q + Sbjct: 26 QFFTSPAKGVMNQENTVQLASEQTKGEIKKTAPDKYNGRVRKVAYLTFDDGPSQFQKEIL 85 Query: 72 ELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEI 121 ++LKSNN+ IG NI S+ +VN + G+ ++T DN ++ Sbjct: 86 DILKSNNIKGTFFMIGGNIPAHKESVKRLVN--EGHYPGVHSMTHDNKKL 133 Searching..................................................done Results from round 2 >gi|254780520|ref|YP_003064933.1| flagellar basal body rod modification protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040197|gb|ACT56993.1| flagellar basal body rod modification protein [Candidatus Liberibacter asiaticus str. psy62] Length = 131 Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats. Identities = 131/131 (100%), Positives = 131/131 (100%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM Sbjct: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 Query: 61 EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120 EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE Sbjct: 61 EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120 Query: 121 IPITTGIRISN 131 IPITTGIRISN Sbjct: 121 IPITTGIRISN 131 >gi|255610098|ref|XP_002539132.1| conserved hypothetical protein [Ricinus communis] gi|223508457|gb|EEF23251.1| conserved hypothetical protein [Ricinus communis] Length = 228 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 49/109 (44%), Positives = 75/109 (68%) Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ 81 L + FL+LLI Q+++QDPT+PM AS+Q++QLA FSQ+EQ +Q NS L+ +L++ ++Q Sbjct: 27 NLNYNDFLQLLIAQMQNQDPTDPMDASQQISQLASFSQVEQQIQTNSHLETVLQNQWISQ 86 Query: 82 ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 AS YIGK I +ADG +G + + V + G+ A T +I I G+ I+ Sbjct: 87 ASDYIGKQIMSADGKTTGTIKEVTVYTDGIIAQTDAGDKILIQAGVTIA 135 >gi|315122289|ref|YP_004062778.1| flagellar basal body rod modification protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495691|gb|ADR52290.1| flagellar basal body rod modification protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 125 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 94/125 (75%), Positives = 106/125 (84%) Query: 7 VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66 +N TQ+E SK +G DAF KLLI Q+KHQDPTEPMKASEQVAQLAVFSQMEQSVQM Sbjct: 1 MNSTQKESLPSKPNTMMGHDAFFKLLIAQMKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 60 Query: 67 NSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTG 126 N+ L+ELL SNNLAQASSYIGKNI N DGS+SG+V A+QVSSTGLTAIT +N EIPI TG Sbjct: 61 NTNLKELLNSNNLAQASSYIGKNIENVDGSMSGIVKAVQVSSTGLTAITAENQEIPIKTG 120 Query: 127 IRISN 131 IR+S+ Sbjct: 121 IRVSS 125 >gi|237817497|ref|ZP_04596488.1| flagellar basal body rod modification protein [Brucella abortus str. 2308 A] gi|294852963|ref|ZP_06793635.1| flagellar hook capping protein [Brucella sp. NVSL 07-0026] gi|237787332|gb|EEP61549.1| flagellar basal body rod modification protein [Brucella abortus str. 2308 A] gi|294818618|gb|EFG35618.1| flagellar hook capping protein [Brucella sp. NVSL 07-0026] Length = 151 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 56/111 (50%), Positives = 82/111 (73%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79 K ++ D+FLKLL+TQ+++QDPT+PM ++ V+QLA FS +EQSVQMNS L+ L+ + +L Sbjct: 41 KASVDYDSFLKLLVTQMQNQDPTQPMDPTQYVSQLATFSNVEQSVQMNSKLETLIANTSL 100 Query: 80 AQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 QA +IG+ +TNADGSISGVV ++ + S+G+ A D + I G+RIS Sbjct: 101 TQAEGWIGRTLTNADGSISGVVKSVTIQSSGMLAELEDGKTLTIGEGVRIS 151 >gi|121602800|ref|YP_989378.1| flagellar hook capping protein [Bartonella bacilliformis KC583] gi|120614977|gb|ABM45578.1| flagellar hook capping protein [Bartonella bacilliformis KC583] Length = 190 Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats. Identities = 45/122 (36%), Positives = 74/122 (60%), Gaps = 3/122 (2%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 QQ+ + +KK D F+KLL+ Q+K+QDPT PM ++E VAQLA FS +EQ+++MN L Sbjct: 19 QQDTPDTGAKKNTDYDTFVKLLVAQMKNQDPTNPMNSTEFVAQLASFSMVEQAIKMNDKL 78 Query: 71 QELLKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGI 127 +++L + ++ A Y+GK I D I G V ++ + S G+ A + ++ I G+ Sbjct: 79 EQVLANGAISGAEGYVGKYIQFEDKDGNIIEGYVKSVDIYSDGIVATLDNGEKVLIGPGV 138 Query: 128 RI 129 + Sbjct: 139 TV 140 >gi|163758037|ref|ZP_02165125.1| flagellar basal-body rod modification protein D [Hoeflea phototrophica DFL-43] gi|162284326|gb|EDQ34609.1| flagellar basal-body rod modification protein D [Hoeflea phototrophica DFL-43] Length = 133 Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats. Identities = 58/132 (43%), Positives = 91/132 (68%), Gaps = 3/132 (2%) Query: 1 MEINTEVNPTQQEFSKSKS---KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVF 57 M+I+ ++ + S + + K TL D FL LL+ Q+K+QDPT+PM ++EQ+AQLA F Sbjct: 1 MDISPLAAASRSQGSAADTAANKATLDYDTFLTLLVEQMKNQDPTDPMDSTEQIAQLATF 60 Query: 58 SQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVD 117 SQ+EQ++Q N L+ELL+S++L+QA S IG+ IT+ D ++SG + +QV S GL A+ D Sbjct: 61 SQVEQTIQTNKHLEELLQSSSLSQAGSLIGRTITSNDETVSGTIEEVQVYSDGLVAVLED 120 Query: 118 NTEIPITTGIRI 129 T++ + G+ I Sbjct: 121 GTKVVVGPGVSI 132 >gi|319406999|emb|CBI80636.1| Flagellar hook capping protein (fragment) [Bartonella sp. 1-1C] Length = 170 Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 44/116 (37%), Positives = 72/116 (62%), Gaps = 3/116 (2%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 + +KK D F+KLL+ Q+K+QDPT+PM ++E V+QLA FS +EQ+++MN TL ++L + Sbjct: 24 AGAKKNADYDMFIKLLVAQMKNQDPTKPMDSTEFVSQLASFSSVEQAIKMNETLSQMLSN 83 Query: 77 NNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129 + A Y+GK I D I G V +I + S G+ A + ++ I G+++ Sbjct: 84 GLINGAEGYVGKYIQFTDEKDKVIEGYVVSIDIYSDGIVATLDNGEKVVIGPGVKV 139 >gi|319898661|ref|YP_004158754.1| flagellar hook capping protein [Bartonella clarridgeiae 73] gi|319402625|emb|CBI76170.1| Flagellar hook capping protein (fragment) [Bartonella clarridgeiae 73] Length = 169 Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 45/116 (38%), Positives = 73/116 (62%), Gaps = 3/116 (2%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 + +KK D F+KLL+ Q+K+QDPT+PM ++E VAQLA FS +EQ+++MN TL ++L + Sbjct: 23 AGAKKNADYDTFIKLLVAQMKNQDPTKPMDSTEFVAQLASFSSVEQAIKMNETLTQMLSN 82 Query: 77 NNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129 ++ A Y+GK I D I G V +I + S G+ A + ++ I G+++ Sbjct: 83 GSINGAEGYVGKYIQFTDEKDKIIEGYVVSIDIYSDGIVATLDNGEKVVIGPGVKV 138 >gi|319403983|emb|CBI77571.1| hypothetical protein BARRO_30152 [Bartonella rochalimae ATCC BAA-1498] Length = 169 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 44/116 (37%), Positives = 72/116 (62%), Gaps = 3/116 (2%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 + +KK D F+KLL+ Q+K+QDPT+PM ++E V+QLA FS +EQ+++MN TL ++L + Sbjct: 23 AGAKKNADYDMFIKLLVAQMKNQDPTKPMDSTEFVSQLASFSSVEQAIKMNETLSQMLSN 82 Query: 77 NNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129 + A Y+GK I D I G V +I + S G+ A + ++ I G+++ Sbjct: 83 GLINGAEGYVGKYIQFTDEKDKVIEGYVVSIDIYSDGIVATLDNGEKVVIGPGVKV 138 >gi|110632635|ref|YP_672843.1| flagellar basal body rod modification protein [Mesorhizobium sp. BNC1] gi|110283619|gb|ABG61678.1| flagellar hook capping protein [Chelativorans sp. BNC1] Length = 129 Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 56/130 (43%), Positives = 90/130 (69%), Gaps = 1/130 (0%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 M ++T V T Q + + +T+ +FL+LL+ Q+K+QDPT PM++++ VAQLA FSQ+ Sbjct: 1 MNVST-VTSTPQNQQTASAPQTVDYQSFLRLLVAQMKNQDPTSPMESTDYVAQLATFSQV 59 Query: 61 EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120 EQSVQMNS L+++L ++ L+QA IG+ IT+ADGS++G+V +++ S G+ A E Sbjct: 60 EQSVQMNSKLEQILAASALSQAGGVIGREITSADGSVTGIVKEVKLYSDGVIAKLESGQE 119 Query: 121 IPITTGIRIS 130 + + G+ IS Sbjct: 120 VVVGPGVVIS 129 >gi|323136996|ref|ZP_08072076.1| flagellar hook capping protein [Methylocystis sp. ATCC 49242] gi|322397757|gb|EFY00279.1| flagellar hook capping protein [Methylocystis sp. ATCC 49242] Length = 136 Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats. Identities = 46/123 (37%), Positives = 79/123 (64%) Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67 N T+ + + +AFL+LL+T+++HQDP +PM ++ V QLA F+ +EQ++Q N Sbjct: 14 NSTRAASVANAAADAGNYNAFLQLLVTELRHQDPMKPMDPTQTVTQLATFASVEQAIQTN 73 Query: 68 STLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGI 127 S L L +++ L+QASS IG+ +++ADG SGVV ++ + G+ A+ D ++ + G+ Sbjct: 74 SLLASLNENSALSQASSLIGRTVSSADGKTSGVVKSVMIDDGGMIAVLADGRKVLLGPGV 133 Query: 128 RIS 130 IS Sbjct: 134 TIS 136 >gi|13472597|ref|NP_104164.1| flagellar basal body rod modification protein [Mesorhizobium loti MAFF303099] gi|14023343|dbj|BAB49950.1| flagellar hook assembly scaffolding protein; FlgD [Mesorhizobium loti MAFF303099] Length = 135 Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats. Identities = 55/129 (42%), Positives = 93/129 (72%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 +++ T + +KS SK + +FLKLLI ++K+QDPT+PM +++ VAQLA FSQ+ Sbjct: 3 VDMTTTIPVGANSTTKSTSKTAVDYQSFLKLLIAEMKNQDPTKPMDSTQYVAQLATFSQV 62 Query: 61 EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120 EQSVQ N+ L ++++S+ L+QA + IG++IT+ADG +G+V ++ ++S+GL A+ D T+ Sbjct: 63 EQSVQSNTKLDQIMQSSALSQADAIIGRSITSADGKTTGIVASVTLASSGLIAVLQDGTK 122 Query: 121 IPITTGIRI 129 +P+ G+ I Sbjct: 123 VPVGPGVSI 131 >gi|325291967|ref|YP_004277831.1| flagellar basal body rod modification protein [Agrobacterium sp. H13-3] gi|325059820|gb|ADY63511.1| flagellar basal body rod modification protein [Agrobacterium sp. H13-3] Length = 156 Score = 120 bits (300), Expect = 9e-26, Method: Composition-based stats. Identities = 51/121 (42%), Positives = 80/121 (66%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 S KS +L D+FLKLLI Q+K+QDPT PM A +Q++QLA FSQ+EQ+++ N+ L Sbjct: 17 AGASSNDKSAASLNYDSFLKLLIAQMKNQDPTSPMDAGQQMSQLASFSQVEQTIKTNTHL 76 Query: 71 QELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 + +L++ L +AS +GK + +AD ++GVV ++V S G+ AIT ++ + G+ S Sbjct: 77 KSMLQAEALTRASDLVGKTVKSADDKVTGVVKEVEVYSDGVVAITEAGDKVLLQAGVTFS 136 Query: 131 N 131 N Sbjct: 137 N 137 >gi|319405426|emb|CBI79045.1| Flagellar hook capping protein [Bartonella sp. AR 15-3] Length = 169 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 44/115 (38%), Positives = 71/115 (61%), Gaps = 3/115 (2%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77 +KK D F+KLL+ Q+K+QDPT+PM ++E VA LA FS +EQ+++MN TL ++L + Sbjct: 24 GAKKNADYDTFIKLLVAQMKNQDPTKPMDSTEFVAHLASFSSVEQAIKMNETLAQMLSNG 83 Query: 78 NLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129 ++ A Y+GK I D I G V +I + S G+ A + ++ I G+++ Sbjct: 84 SINGAEGYVGKYIQFTDEKGTVIEGYVVSIDIYSDGIVATLDNGEKVVIGPGVKV 138 >gi|17988508|ref|NP_541141.1| flagellar basal body rod modification protein [Brucella melitensis bv. 1 str. 16M] gi|23500849|ref|NP_700289.1| flagellar basal body rod modification protein [Brucella suis 1330] gi|62317952|ref|YP_223805.1| flagellar basal body rod modification protein [Brucella abortus bv. 1 str. 9-941] gi|83269929|ref|YP_419220.1| flagellar basal body rod modification protein [Brucella melitensis biovar Abortus 2308] gi|148557915|ref|YP_001257999.1| flagellar basal body rod modification protein [Brucella ovis ATCC 25840] gi|161621177|ref|YP_001595063.1| flagellar basal body rod modification protein [Brucella canis ATCC 23365] gi|163845452|ref|YP_001623107.1| flagellar basal body rod modification protein [Brucella suis ATCC 23445] gi|189023203|ref|YP_001932944.1| flagellar basal body rod modification protein [Brucella abortus S19] gi|225628424|ref|ZP_03786458.1| flagellar basal body rod modification protein [Brucella ceti str. Cudo] gi|225686880|ref|YP_002734852.1| flagellar basal body rod modification protein [Brucella melitensis ATCC 23457] gi|254691616|ref|ZP_05154870.1| flagellar basal body rod modification protein [Brucella abortus bv. 6 str. 870] gi|254695088|ref|ZP_05156916.1| flagellar basal body rod modification protein [Brucella abortus bv. 3 str. Tulya] gi|254698184|ref|ZP_05160012.1| flagellar basal body rod modification protein [Brucella abortus bv. 2 str. 86/8/59] gi|254699258|ref|ZP_05161086.1| flagellar basal body rod modification protein [Brucella suis bv. 5 str. 513] gi|254702378|ref|ZP_05164206.1| flagellar basal body rod modification protein [Brucella suis bv. 3 str. 686] gi|254706501|ref|ZP_05168329.1| flagellar basal body rod modification protein [Brucella pinnipedialis M163/99/10] gi|254711214|ref|ZP_05173025.1| flagellar basal body rod modification protein [Brucella pinnipedialis B2/94] gi|254711813|ref|ZP_05173624.1| flagellar basal body rod modification protein [Brucella ceti M644/93/1] gi|254714882|ref|ZP_05176693.1| flagellar basal body rod modification protein [Brucella ceti M13/05/1] gi|254731629|ref|ZP_05190207.1| flagellar basal body rod modification protein [Brucella abortus bv. 4 str. 292] gi|256015893|ref|YP_003105902.1| flagellar basal body rod modification protein [Brucella microti CCM 4915] gi|256030157|ref|ZP_05443771.1| flagellar basal body rod modification protein [Brucella pinnipedialis M292/94/1] gi|256042861|ref|ZP_05445807.1| flagellar basal body rod modification protein [Brucella melitensis bv. 1 str. Rev.1] gi|256059809|ref|ZP_05450004.1| flagellar basal body rod modification protein [Brucella neotomae 5K33] gi|256112181|ref|ZP_05453102.1| flagellar basal body rod modification protein [Brucella melitensis bv. 3 str. Ether] gi|256158336|ref|ZP_05456240.1| flagellar basal body rod modification protein [Brucella ceti M490/95/1] gi|256252730|ref|ZP_05458266.1| flagellar basal body rod modification protein [Brucella ceti B1/94] gi|256256803|ref|ZP_05462339.1| flagellar basal body rod modification protein [Brucella abortus bv. 9 str. C68] gi|256261983|ref|ZP_05464515.1| flagellar hook capping protein [Brucella melitensis bv. 2 str. 63/9] gi|260166791|ref|ZP_05753602.1| flagellar basal body rod modification protein [Brucella sp. F5/99] gi|260544137|ref|ZP_05819958.1| flagellar hook capping protein [Brucella abortus NCTC 8038] gi|260564098|ref|ZP_05834583.1| flagellar hook capping protein [Brucella melitensis bv. 1 str. 16M] gi|260568719|ref|ZP_05839188.1| flagellar hook capping protein [Brucella suis bv. 4 str. 40] gi|260757247|ref|ZP_05869595.1| flagellar hook capping protein [Brucella abortus bv. 6 str. 870] gi|260759388|ref|ZP_05871736.1| flagellar hook capping protein [Brucella abortus bv. 4 str. 292] gi|260762631|ref|ZP_05874963.1| flagellar hook capping protein [Brucella abortus bv. 2 str. 86/8/59] gi|260883051|ref|ZP_05894665.1| flagellar hook capping protein [Brucella abortus bv. 9 str. C68] gi|261215439|ref|ZP_05929720.1| flagellar hook capping protein [Brucella abortus bv. 3 str. Tulya] gi|261216572|ref|ZP_05930853.1| flagellar hook capping protein [Brucella ceti M13/05/1] gi|261219808|ref|ZP_05934089.1| flagellar hook capping protein [Brucella ceti B1/94] gi|261313955|ref|ZP_05953152.1| flagellar hook capping protein [Brucella pinnipedialis M163/99/10] gi|261318805|ref|ZP_05958002.1| flagellar hook capping protein [Brucella pinnipedialis B2/94] gi|261319442|ref|ZP_05958639.1| flagellar hook capping protein [Brucella ceti M644/93/1] gi|261323789|ref|ZP_05962986.1| flagellar hook capping protein [Brucella neotomae 5K33] gi|261749697|ref|ZP_05993406.1| flagellar hook capping protein [Brucella suis bv. 5 str. 513] gi|261752941|ref|ZP_05996650.1| flagellar hook capping protein [Brucella suis bv. 3 str. 686] gi|261756168|ref|ZP_05999877.1| flagellar hook capping protein [Brucella sp. F5/99] gi|265987188|ref|ZP_06099745.1| flagellar hook capping protein [Brucella pinnipedialis M292/94/1] gi|265989296|ref|ZP_06101853.1| flagellar hook capping protein [Brucella melitensis bv. 1 str. Rev.1] gi|265993608|ref|ZP_06106165.1| flagellar hook capping protein [Brucella melitensis bv. 3 str. Ether] gi|265996851|ref|ZP_06109408.1| flagellar hook capping protein [Brucella ceti M490/95/1] gi|297250156|ref|ZP_06933857.1| flagellar hook capping protein [Brucella abortus bv. 5 str. B3196] gi|17984300|gb|AAL53405.1| basal-body rod modification protein flgd [Brucella melitensis bv. 1 str. 16M] gi|23464513|gb|AAN34294.1| basal-body rod modification protein FlgD, putative [Brucella suis 1330] gi|62198145|gb|AAX76444.1| hypothetical FlgD basal-body rod modification protein [Brucella abortus bv. 1 str. 9-941] gi|82940203|emb|CAJ13259.1| ATP/GTP-binding site motif A (P-loop):Flagellar hook capping protein [Brucella melitensis biovar Abortus 2308] gi|148369200|gb|ABQ62072.1| putative basal-body rod modification protein FlgD [Brucella ovis ATCC 25840] gi|161337988|gb|ABX64292.1| flagellar hook capping protein [Brucella canis ATCC 23365] gi|163676175|gb|ABY40285.1| Hypothetical protein, conserved [Brucella suis ATCC 23445] gi|189021777|gb|ACD74498.1| Flagellar hook capping protein [Brucella abortus S19] gi|225616270|gb|EEH13318.1| flagellar basal body rod modification protein [Brucella ceti str. Cudo] gi|225642985|gb|ACO02898.1| flagellar hook capping protein [Brucella melitensis ATCC 23457] gi|255998553|gb|ACU50240.1| flagellar basal body rod modification protein [Brucella microti CCM 4915] gi|260097408|gb|EEW81282.1| flagellar hook capping protein [Brucella abortus NCTC 8038] gi|260151741|gb|EEW86834.1| flagellar hook capping protein [Brucella melitensis bv. 1 str. 16M] gi|260155384|gb|EEW90465.1| flagellar hook capping protein [Brucella suis bv. 4 str. 40] gi|260669706|gb|EEX56646.1| flagellar hook capping protein [Brucella abortus bv. 4 str. 292] gi|260673052|gb|EEX59873.1| flagellar hook capping protein [Brucella abortus bv. 2 str. 86/8/59] gi|260677355|gb|EEX64176.1| flagellar hook capping protein [Brucella abortus bv. 6 str. 870] gi|260872579|gb|EEX79648.1| flagellar hook capping protein [Brucella abortus bv. 9 str. C68] gi|260917046|gb|EEX83907.1| flagellar hook capping protein [Brucella abortus bv. 3 str. Tulya] gi|260918392|gb|EEX85045.1| flagellar hook capping protein [Brucella ceti B1/94] gi|260921661|gb|EEX88229.1| flagellar hook capping protein [Brucella ceti M13/05/1] gi|261292132|gb|EEX95628.1| flagellar hook capping protein [Brucella ceti M644/93/1] gi|261298028|gb|EEY01525.1| flagellar hook capping protein [Brucella pinnipedialis B2/94] gi|261299769|gb|EEY03266.1| flagellar hook capping protein [Brucella neotomae 5K33] gi|261302981|gb|EEY06478.1| flagellar hook capping protein [Brucella pinnipedialis M163/99/10] gi|261736152|gb|EEY24148.1| flagellar hook capping protein [Brucella sp. F5/99] gi|261739450|gb|EEY27376.1| flagellar hook capping protein [Brucella suis bv. 5 str. 513] gi|261742694|gb|EEY30620.1| flagellar hook capping protein [Brucella suis bv. 3 str. 686] gi|262551148|gb|EEZ07309.1| flagellar hook capping protein [Brucella ceti M490/95/1] gi|262764478|gb|EEZ10510.1| flagellar hook capping protein [Brucella melitensis bv. 3 str. Ether] gi|262999965|gb|EEZ12655.1| flagellar hook capping protein [Brucella melitensis bv. 1 str. Rev.1] gi|263091467|gb|EEZ16003.1| flagellar hook capping protein [Brucella melitensis bv. 2 str. 63/9] gi|264659385|gb|EEZ29646.1| flagellar hook capping protein [Brucella pinnipedialis M292/94/1] gi|297174025|gb|EFH33389.1| flagellar hook capping protein [Brucella abortus bv. 5 str. B3196] gi|326411298|gb|ADZ68362.1| flagellar basal body rod modification protein [Brucella melitensis M28] gi|326554587|gb|ADZ89226.1| flagellar basal body rod modification protein [Brucella melitensis M5-90] Length = 137 Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 56/111 (50%), Positives = 82/111 (73%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79 K ++ D+FLKLL+TQ+++QDPT+PM ++ V+QLA FS +EQSVQMNS L+ L+ + +L Sbjct: 27 KASVDYDSFLKLLVTQMQNQDPTQPMDPTQYVSQLATFSNVEQSVQMNSKLETLIANTSL 86 Query: 80 AQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 QA +IG+ +TNADGSISGVV ++ + S+G+ A D + I G+RIS Sbjct: 87 TQAEGWIGRTLTNADGSISGVVKSVTIQSSGMLAELEDGKTLTIGEGVRIS 137 >gi|150395508|ref|YP_001325975.1| flagellar basal body rod modification protein [Sinorhizobium medicae WSM419] gi|150027023|gb|ABR59140.1| flagellar hook capping protein [Sinorhizobium medicae WSM419] Length = 138 Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 49/120 (40%), Positives = 83/120 (69%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69 + E + S TL ++FLKLL+ Q+K+QDPT+PM A++Q+AQLA FSQ+EQ+++ N Sbjct: 18 SGTESAGDASAATLNYESFLKLLVAQMKNQDPTQPMDATQQIAQLATFSQVEQTIKTNKN 77 Query: 70 LQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129 L+ LL+ +L++A + IG+ +T+ADG +GVV +++ S G+ A+ E+ I G+++ Sbjct: 78 LESLLQRTSLSEADAVIGRTVTSADGKTTGVVKEVKLYSDGIIAVLDTGKELVIGPGVKV 137 >gi|306841281|ref|ZP_07473992.1| flagellar basal body rod modification protein [Brucella sp. BO2] gi|306288683|gb|EFM60014.1| flagellar basal body rod modification protein [Brucella sp. BO2] Length = 137 Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats. Identities = 56/127 (44%), Positives = 87/127 (68%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 T T + + +K ++ D+FLKLL+TQ+++QDPT+PM ++ V+QLA FS +EQS Sbjct: 11 TTNSASTAGNSTSAANKASVDYDSFLKLLVTQMQNQDPTQPMDPTQYVSQLATFSNVEQS 70 Query: 64 VQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPI 123 VQMNS L+ L+ + +L QA +IG+ +T+ADGSI+GVV ++ + S+G+ A D + I Sbjct: 71 VQMNSKLETLIANTSLTQAEGWIGRTLTSADGSITGVVKSVTIQSSGMLAELEDGKTLTI 130 Query: 124 TTGIRIS 130 G+RIS Sbjct: 131 GEGVRIS 137 >gi|254720778|ref|ZP_05182589.1| flagellar basal body rod modification protein [Brucella sp. 83/13] gi|265985836|ref|ZP_06098571.1| flagellar hook capping protein [Brucella sp. 83/13] gi|306840131|ref|ZP_07472916.1| flagellar basal body rod modification protein [Brucella sp. NF 2653] gi|306845414|ref|ZP_07477988.1| flagellar basal body rod modification protein [Brucella sp. BO1] gi|264664428|gb|EEZ34689.1| flagellar hook capping protein [Brucella sp. 83/13] gi|306274157|gb|EFM55973.1| flagellar basal body rod modification protein [Brucella sp. BO1] gi|306404776|gb|EFM61070.1| flagellar basal body rod modification protein [Brucella sp. NF 2653] Length = 137 Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats. Identities = 55/111 (49%), Positives = 82/111 (73%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79 K ++ D+FLKLL+TQ+++QDPT+PM ++ V+QLA FS +EQSVQMNS L+ L+ + +L Sbjct: 27 KASVDYDSFLKLLVTQMQNQDPTQPMDPTQYVSQLATFSNVEQSVQMNSKLETLIANTSL 86 Query: 80 AQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 QA +IG+ +T+ADGSISGVV ++ + S+G+ A D + I G+RIS Sbjct: 87 TQAEGWIGRTLTSADGSISGVVKSVTIQSSGMLAELEDGKTLTIGEGVRIS 137 >gi|239834422|ref|ZP_04682750.1| flagellar basal body rod modification protein [Ochrobactrum intermedium LMG 3301] gi|239822485|gb|EEQ94054.1| flagellar basal body rod modification protein [Ochrobactrum intermedium LMG 3301] Length = 136 Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats. Identities = 54/114 (47%), Positives = 84/114 (73%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 + +K ++ ++FLKLL+TQ+++QDPT+PM A++ V+QLA FS +EQ+VQMNS L+ L+ + Sbjct: 23 AANKASVDYNSFLKLLVTQMQNQDPTQPMDATQYVSQLATFSNVEQAVQMNSKLETLIAN 82 Query: 77 NNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 +L QA +IG+ +TNADGSISGVV ++ + S G+ A D + I G++IS Sbjct: 83 TSLTQAEGWIGRTLTNADGSISGVVKSVTIQSNGMLAELEDGKTLMIGAGVKIS 136 >gi|153011503|ref|YP_001372717.1| flagellar basal body rod modification protein [Ochrobactrum anthropi ATCC 49188] gi|151563391|gb|ABS16888.1| flagellar hook capping protein [Ochrobactrum anthropi ATCC 49188] Length = 136 Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats. Identities = 54/111 (48%), Positives = 82/111 (73%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79 K ++ ++FLKLL+TQ+++QDPT+PM A++ V+QLA FS +EQ+VQMNS L+ L+ + +L Sbjct: 26 KASVDYNSFLKLLVTQMQNQDPTQPMDATQYVSQLATFSNVEQAVQMNSKLETLIANTSL 85 Query: 80 AQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 QA +IG+ +TNADGSISGVV ++ + S G+ A D + I G++IS Sbjct: 86 TQAEGWIGRTLTNADGSISGVVKSVTIQSNGMLAELEDGKTLMIGAGVKIS 136 >gi|319781660|ref|YP_004141136.1| flagellar hook capping protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167548|gb|ADV11086.1| flagellar hook capping protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 135 Score = 116 bits (292), Expect = 8e-25, Method: Composition-based stats. Identities = 52/129 (40%), Positives = 91/129 (70%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 +++ T + + + S SK + +FLKLLI ++K+QDPT+PM +++ VAQLA FSQ+ Sbjct: 3 VDMTTTIPTGANQATASTSKTAVDYQSFLKLLIAEMKNQDPTKPMDSTQYVAQLATFSQV 62 Query: 61 EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120 EQSVQ N+ L ++++S+ L+QA + IG++IT+ADG +G V +++++S GL A+ + TE Sbjct: 63 EQSVQTNTKLNQIMQSSALSQADALIGRSITSADGLTTGTVASVRLASNGLIAVLQNGTE 122 Query: 121 IPITTGIRI 129 + + G+ + Sbjct: 123 VAVGPGVSV 131 >gi|86356335|ref|YP_468227.1| flagellar basal body rod modification protein [Rhizobium etli CFN 42] gi|86280437|gb|ABC89500.1| flagellar basal-body rod protein [Rhizobium etli CFN 42] Length = 142 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 60/115 (52%), Positives = 88/115 (76%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 ++SK TL D FL+LLI Q+K+QDPT+PM ASEQVAQLA FSQ+EQ++Q N+ L LL S Sbjct: 21 AQSKATLNYDNFLQLLIAQMKNQDPTDPMDASEQVAQLATFSQVEQTIQTNTKLDTLLAS 80 Query: 77 NNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 ++L QASSY+GK + +ADG++ GV+++++V S G+ A T D +I + GI +++ Sbjct: 81 SSLTQASSYVGKYMESADGTVKGVIDSVKVYSDGIIATTTDGDKILVQAGITVAD 135 >gi|190890387|ref|YP_001976929.1| flagellar basal-body rod protein [Rhizobium etli CIAT 652] gi|190695666|gb|ACE89751.1| flagellar basal-body rod protein [Rhizobium etli CIAT 652] gi|327193064|gb|EGE59976.1| flagellar basal-body rod protein [Rhizobium etli CNPAF512] Length = 141 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 59/112 (52%), Positives = 85/112 (75%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79 K TL D FL+LLI Q+K+QDPT+PM ASEQVAQLA FSQ+EQ++Q N+ L LL S++L Sbjct: 23 KATLNYDNFLQLLIAQMKNQDPTDPMDASEQVAQLATFSQVEQTIQTNTKLDTLLASSSL 82 Query: 80 AQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 QASSY+GK + +ADG++ GV+++++V S G+ A T D +I + GI +++ Sbjct: 83 TQASSYVGKYMESADGTVKGVIDSVKVYSDGIIATTTDGGKILVQAGITVAD 134 >gi|260466598|ref|ZP_05812786.1| flagellar hook capping protein [Mesorhizobium opportunistum WSM2075] gi|259029604|gb|EEW30892.1| flagellar hook capping protein [Mesorhizobium opportunistum WSM2075] Length = 135 Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 54/129 (41%), Positives = 90/129 (69%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 +++ T + + S SK + +FLKLLI ++K+QDPT+PM +++ VAQLA FSQ+ Sbjct: 3 VDMTTTIPVGSNSTTTSTSKTAVDYQSFLKLLIAEMKNQDPTKPMDSTQYVAQLATFSQV 62 Query: 61 EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120 EQSVQ N+ L+++++S+ L+QA + IG+ IT+ADG +G V ++ ++S GL A+ D T+ Sbjct: 63 EQSVQTNTKLEQIMQSSALSQADAIIGRTITSADGKTTGTVASVTLASNGLIAVLQDGTQ 122 Query: 121 IPITTGIRI 129 +P+ G+ I Sbjct: 123 VPVGAGVSI 131 >gi|218506521|ref|ZP_03504399.1| flagellar basal body rod modification protein [Rhizobium etli Brasil 5] Length = 118 Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 58/111 (52%), Positives = 84/111 (75%) Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA 80 TL D FL+LLI Q+K+QDPT+PM ASEQVAQLA FSQ+EQ++Q N+ L LL S++L Sbjct: 1 ATLNYDNFLQLLIAQMKNQDPTDPMDASEQVAQLATFSQVEQTIQTNTKLDTLLASSSLT 60 Query: 81 QASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 QASSY+GK + +ADG++ GV+++++V S G+ A T D +I + GI +++ Sbjct: 61 QASSYVGKYMESADGTVKGVIDSVKVYSDGIIATTTDGGKILVQAGITVAD 111 >gi|15964437|ref|NP_384790.1| flagellar basal body rod modification protein [Sinorhizobium meliloti 1021] gi|307311579|ref|ZP_07591220.1| flagellar hook capping protein [Sinorhizobium meliloti BL225C] gi|307318934|ref|ZP_07598365.1| flagellar hook capping protein [Sinorhizobium meliloti AK83] gi|10998533|gb|AAG25963.1|AF300968_5 FlgD [Sinorhizobium meliloti] gi|15073614|emb|CAC45256.1| Putative basal-body rod modification protein [Sinorhizobium meliloti 1021] gi|306895348|gb|EFN26103.1| flagellar hook capping protein [Sinorhizobium meliloti AK83] gi|306899596|gb|EFN30225.1| flagellar hook capping protein [Sinorhizobium meliloti BL225C] Length = 138 Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 50/128 (39%), Positives = 81/128 (63%), Gaps = 2/128 (1%) Query: 2 EINTEVNPTQQEFSKSK--SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59 + PT + S TL ++FLKLL+ Q+K+QDPT+PM A++Q+AQLA FSQ Sbjct: 8 NTSNSYTPTVSATDSAGDASAATLNYESFLKLLVAQMKNQDPTQPMDATQQIAQLATFSQ 67 Query: 60 MEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNT 119 +EQ+++ N L+ LL+ L++A + IG+ +T+ADG +GVV +++ S G+ A+ Sbjct: 68 VEQTIKTNKNLESLLQRTALSEADAVIGRTVTSADGKTTGVVKEVKLYSDGIIAVLDTGK 127 Query: 120 EIPITTGI 127 E+ I G+ Sbjct: 128 ELVIGPGV 135 >gi|15887924|ref|NP_353605.1| flagellar basal body rod modification protein [Agrobacterium tumefaciens str. C58] gi|15155520|gb|AAK86390.1| hook formation protein [Agrobacterium tumefaciens str. C58] Length = 157 Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats. Identities = 50/121 (41%), Positives = 80/121 (66%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 S K+ +L D+FLKLLI Q+K+QDPT PM A +Q++QLA FSQ+EQ+++ N+ L Sbjct: 17 AGASSSDKNAASLNYDSFLKLLIAQMKNQDPTSPMDAGQQMSQLASFSQVEQTIKTNTHL 76 Query: 71 QELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 + +L++ L +AS +GK + +AD ++GVV +QV S G+ A+T ++ + G+ S Sbjct: 77 KSMLQAEALTRASDLVGKTVMSADDKVTGVVKEVQVFSDGIVAVTEAGDKVLLQAGVVFS 136 Query: 131 N 131 N Sbjct: 137 N 137 >gi|319409164|emb|CBI82808.1| Flagellar hook capping protein [Bartonella schoenbuchensis R1] Length = 160 Score = 113 bits (283), Expect = 8e-24, Method: Composition-based stats. Identities = 45/115 (39%), Positives = 72/115 (62%), Gaps = 3/115 (2%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77 ++KK D F+KLL+ Q+ +QDPT PM ++E VAQLA FS +EQ+++ N L ++L + Sbjct: 26 EAKKDTDFDTFIKLLVAQMNNQDPTNPMDSTEFVAQLASFSVVEQTIKTNDKLDQILSNG 85 Query: 78 NLAQASSYIGKNI--TNADGS-ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129 ++ A Y+GK I +ADG I G V +I + + G+ A +N ++ I GI + Sbjct: 86 SINGAEGYVGKYIQFEDADGKIIEGYVESIDIYTDGMVATLDNNEKVLIGPGITV 140 >gi|260893869|ref|YP_003239966.1| flagellar hook capping protein [Ammonifex degensii KC4] gi|260866010|gb|ACX53116.1| flagellar hook capping protein [Ammonifex degensii KC4] Length = 136 Score = 113 bits (283), Expect = 9e-24, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 71/136 (52%), Gaps = 8/136 (5%) Query: 1 MEINTEVNPTQQEFSKSKSKKT-----LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55 M+++T + PT + S ++ +D FLK+L+ Q+ H DP P K +++++ Sbjct: 1 MDVSTLMAPTAGTSAASTTEAASSLFRWSKDTFLKILVAQLSHPDPFSPPKPETIISEMS 60 Query: 56 VFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNIT-NADGS-ISGVVNAIQVSSTGLTA 113 + +EQ +++ S+L + L Q +S +GK +T ADGS ++G V +++ G Sbjct: 61 NLALLEQMMRLTSSLDSFSRWLELGQGASLVGKRVTVEADGSAVTGTVEKVRL-EDGKIR 119 Query: 114 ITVDNTEIPITTGIRI 129 + +D E P+ + Sbjct: 120 LVIDGREYPLAAVKEV 135 >gi|170748120|ref|YP_001754380.1| flagellar basal body rod modification protein [Methylobacterium radiotolerans JCM 2831] gi|170654642|gb|ACB23697.1| flagellar hook capping protein [Methylobacterium radiotolerans JCM 2831] Length = 139 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 48/107 (44%), Positives = 75/107 (70%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82 L D FLKLL+ Q+K+Q+PT+PMK+++ +AQLA FSQ+EQSV MNS L LL S+ L+QA Sbjct: 32 LNYDNFLKLLLAQMKNQNPTDPMKSTDYMAQLATFSQVEQSVNMNSKLDALLTSSTLSQA 91 Query: 83 SSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129 +G +T+AD +++G V +++V+S GL A + ++ G+ + Sbjct: 92 GGLVGHTVTSADKTLTGTVVSVEVASNGLLAHLDNGKDVRYEPGMTV 138 >gi|170744548|ref|YP_001773203.1| flagellar basal body rod modification protein [Methylobacterium sp. 4-46] gi|168198822|gb|ACA20769.1| flagellar hook capping protein [Methylobacterium sp. 4-46] Length = 142 Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats. Identities = 50/116 (43%), Positives = 81/116 (69%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74 + SK+ +L DAFL+LL+TQ+K+QDPT+PM ++ + +LA FS++EQS +MN+ L LL Sbjct: 27 TTSKTATSLNTDAFLQLLLTQLKNQDPTKPMDSTAYMGELATFSEVEQSTKMNNKLDALL 86 Query: 75 KSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 SN L+QA S IG+ T+ DG I+GVV ++++++ G A D ++ + G+ +S Sbjct: 87 SSNYLSQAESAIGRTATSDDGKITGVVASVKITTDGPLATLKDGRQLLLGNGVSLS 142 >gi|220932519|ref|YP_002509427.1| flagellar hook capping protein [Halothermothrix orenii H 168] gi|219993829|gb|ACL70432.1| flagellar hook capping protein [Halothermothrix orenii H 168] Length = 142 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 44/114 (38%), Positives = 66/114 (57%), Gaps = 4/114 (3%) Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA 80 L +DAF KLLITQ++HQDP +PM+ E +AQ+A FS +EQ MN L ++ +L+ Sbjct: 29 NNLDKDAFFKLLITQLRHQDPLKPMEDREFIAQMAEFSSLEQMANMNENLSTFMRMESLS 88 Query: 81 QASSYIGKNITNADGS----ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 Q ++ IG+N+ D +SG V + S L A ++ +IP+ T IS Sbjct: 89 QGAALIGRNVEYVDSQSGRILSGKVTKVVYESGTLYAHLDNDVKIPVDTITSIS 142 >gi|116250505|ref|YP_766343.1| flagellar basal body rod modification protein [Rhizobium leguminosarum bv. viciae 3841] gi|115255153|emb|CAK06227.1| putative hook formation protein [Rhizobium leguminosarum bv. viciae 3841] Length = 142 Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 57/115 (49%), Positives = 85/115 (73%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 ++SK TL D FL+LLI Q+K+QDPT+P+ ASEQ++QLA FSQ+EQ++Q N+ L LL S Sbjct: 21 AQSKATLNYDNFLQLLIAQMKNQDPTDPVDASEQMSQLASFSQVEQTIQTNTKLDTLLAS 80 Query: 77 NNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 ++L QASSY+GK + +ADG++ G + +++V S G+ A T D I + GI I++ Sbjct: 81 SSLTQASSYVGKYMESADGTVKGTIESVKVYSDGIIATTTDGGNILVQAGITIAD 135 >gi|300024583|ref|YP_003757194.1| flagellar hook capping protein [Hyphomicrobium denitrificans ATCC 51888] gi|299526404|gb|ADJ24873.1| flagellar hook capping protein [Hyphomicrobium denitrificans ATCC 51888] Length = 136 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 44/123 (35%), Positives = 80/123 (65%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 + + + TL + FLKL++ Q+++QDP P +++ ++Q+A FS +EQ + Sbjct: 9 NTSGTSNADANDKTKNSTLNYNDFLKLMVAQLRNQDPLNPTDSTQYMSQIAQFSSVEQGI 68 Query: 65 QMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPIT 124 N+ L +LL ++N++QAS+ IG ++T+ADGS+SG+V ++++ STG TAI + E+ I Sbjct: 69 NTNAKLDQLLVNSNISQASTMIGLSLTSADGSVSGIVTSVRIDSTGSTAILNNGKEVRID 128 Query: 125 TGI 127 G+ Sbjct: 129 QGV 131 >gi|323703175|ref|ZP_08114828.1| flagellar hook capping protein [Desulfotomaculum nigrificans DSM 574] gi|323531834|gb|EGB21720.1| flagellar hook capping protein [Desulfotomaculum nigrificans DSM 574] Length = 138 Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats. Identities = 43/134 (32%), Positives = 69/134 (51%), Gaps = 5/134 (3%) Query: 1 MEINTEVN--PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58 M +N+ N S K KTL +DAFL++++ Q+K+QDPT PM + + Q+A F+ Sbjct: 1 MAVNSVNNDLFYDNNKSPRKPVKTLDKDAFLQIMVAQLKYQDPTSPMDNDKMIEQIAQFT 60 Query: 59 QMEQSVQMNSTLQELLKSNNLAQASSYIGKNIT--NADGSISGVVNAIQVSSTGLTAITV 116 +EQ +NS ++L L SS IG +T N D +ISG V + + +TG+ Sbjct: 61 TLEQITNLNSNFEKLYSLQQLGYGSSLIGYGVTLQNGDENISGTVQKVTMDATGVKIWVA 120 Query: 117 DNTEIPITTGIRIS 130 D ++ + Sbjct: 121 D-KPYDLSQITSVE 133 >gi|256750747|ref|ZP_05491632.1| flagellar hook capping protein [Thermoanaerobacter ethanolicus CCSD1] gi|256750330|gb|EEU63349.1| flagellar hook capping protein [Thermoanaerobacter ethanolicus CCSD1] Length = 131 Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats. Identities = 50/137 (36%), Positives = 75/137 (54%), Gaps = 16/137 (11%) Query: 1 MEINTEVNPTQQEFSK-SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59 M+INT N T ++ + SK LG+D FLKLL+TQ+K+QDP PM E +AQLA FS Sbjct: 1 MDINTNYNITTVYTNRVTTSKDQLGKDDFLKLLVTQLKNQDPLNPMDDREFIAQLAQFST 60 Query: 60 MEQSVQMNSTLQELLKSNNLAQASSYIGK----NITNADG---SISGVVNAIQVSSTGLT 112 +EQ MNS++ N +A + IGK IT+ +G ++ G V+ + G Sbjct: 61 LEQMQNMNSSI-------NAIRAINLIGKNIYATITDNNGNSRTVIGKVD-VVYKQNGEY 112 Query: 113 AITVDNTEIPITTGIRI 129 + V+ +IP+ + Sbjct: 113 FLEVNGIDIPLDAVTAV 129 >gi|307264874|ref|ZP_07546436.1| flagellar hook capping protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306920132|gb|EFN50344.1| flagellar hook capping protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 131 Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats. Identities = 50/138 (36%), Positives = 77/138 (55%), Gaps = 16/138 (11%) Query: 1 MEINTEVNPTQQEFSK-SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59 M+INT N T ++ + SK LG+D FLKLL+TQ+K+QDP +PM E +AQLA FS Sbjct: 1 MDINTNYNITTVYTNRVTTSKDQLGKDDFLKLLVTQLKNQDPLKPMDDREFIAQLAQFST 60 Query: 60 MEQSVQMNSTLQELLKSNNLAQASSYIGK----NITNADG---SISGVVNAIQVSSTGLT 112 +EQ MNS+ N +A + IGK IT+ +G +++G V+ + G Sbjct: 61 LEQMQNMNSSF-------NAVRAINLIGKNIYATITDNNGNSRTVTGKVD-VVYKQNGEY 112 Query: 113 AITVDNTEIPITTGIRIS 130 + V+ ++P+ +S Sbjct: 113 FLQVNGIDVPVDAVTAVS 130 >gi|269836574|ref|YP_003318802.1| flagellar hook capping protein [Sphaerobacter thermophilus DSM 20745] gi|269785837|gb|ACZ37980.1| flagellar hook capping protein [Sphaerobacter thermophilus DSM 20745] Length = 150 Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats. Identities = 46/134 (34%), Positives = 72/134 (53%), Gaps = 7/134 (5%) Query: 3 INTEVNPTQQEFSKSK--SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 + + NP S + LG+ FL LL Q+++QDP PM+ +E +AQLA + + Sbjct: 6 VTNQTNPGTDAASSTTFSPADRLGKQEFLMLLTAQLRNQDPLRPMEDTEFIAQLAQLNSL 65 Query: 61 EQSVQMNSTLQELLKSNNLAQASSYIGKNITNAD----GSISGVVNAIQVSSTGLTAITV 116 EQ QMN TL L++ + LAQ +S IG+++T D G I GVV+ + + G + V Sbjct: 66 EQMQQMNETLSTLVEMSVLAQTASLIGRHVTALDPSGGGVIKGVVSDVTIHE-GTPVLNV 124 Query: 117 DNTEIPITTGIRIS 130 T +P+ + I Sbjct: 125 GGTAVPLAHVVSIG 138 >gi|125972993|ref|YP_001036903.1| flagellar hook capping protein [Clostridium thermocellum ATCC 27405] gi|281417204|ref|ZP_06248224.1| flagellar hook capping protein [Clostridium thermocellum JW20] gi|125713218|gb|ABN51710.1| flagellar hook capping protein [Clostridium thermocellum ATCC 27405] gi|281408606|gb|EFB38864.1| flagellar hook capping protein [Clostridium thermocellum JW20] Length = 323 Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats. Identities = 36/129 (27%), Positives = 65/129 (50%), Gaps = 16/129 (12%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69 + S ++ LG+D FL LLITQ+++QDP P+ E ++Q+A FS +EQ +N + Sbjct: 18 STTNKSTQRNTGELGKDEFLNLLITQLQYQDPLNPVDDKEFISQMAQFSALEQMQNLNKS 77 Query: 70 LQELLKSNNLAQASSYIGKNITNAD--------GSISGVVNAIQVSSTGLTAITVDNTEI 121 + +A IGK IT G + G+V ++++ G + V+ ++ Sbjct: 78 F-------SATKAFGMIGKYITGTTSNGSDSGAGFVEGIVRSVKM-ENGKILLEVNGLDV 129 Query: 122 PITTGIRIS 130 P+ + +S Sbjct: 130 PVDNVLSVS 138 >gi|256004790|ref|ZP_05429765.1| flagellar hook capping protein [Clostridium thermocellum DSM 2360] gi|255991240|gb|EEU01347.1| flagellar hook capping protein [Clostridium thermocellum DSM 2360] gi|316940771|gb|ADU74805.1| flagellar hook capping protein [Clostridium thermocellum DSM 1313] Length = 323 Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats. Identities = 36/128 (28%), Positives = 64/128 (50%), Gaps = 16/128 (12%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 S ++ LG+D FL LLITQ+++QDP P+ E ++Q+A FS +EQ +N + Sbjct: 19 TTNKSTQRNTGELGKDEFLNLLITQLQYQDPLNPVDDKEFISQMAQFSALEQMQNLNKSF 78 Query: 71 QELLKSNNLAQASSYIGKNITNAD--------GSISGVVNAIQVSSTGLTAITVDNTEIP 122 + +A IGK IT G + G+V ++++ G + V+ ++P Sbjct: 79 -------SATKAFGMIGKYITGTTSNGSDSGAGFVEGIVRSVKM-ENGKILLEVNGLDVP 130 Query: 123 ITTGIRIS 130 + + +S Sbjct: 131 VDNVLSVS 138 >gi|222084890|ref|YP_002543419.1| flagellar basal-body rod protein [Agrobacterium radiobacter K84] gi|221722338|gb|ACM25494.1| flagellar basal-body rod protein [Agrobacterium radiobacter K84] Length = 158 Score = 110 bits (274), Expect = 9e-23, Method: Composition-based stats. Identities = 49/108 (45%), Positives = 75/108 (69%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82 L + FLKLLI Q+K QDPT+PM A++Q++QLA FSQ+EQ +Q NS L+ +L++ ++QA Sbjct: 28 LNYNDFLKLLIAQMKTQDPTDPMDATQQISQLASFSQVEQQIQTNSHLETVLQNQWISQA 87 Query: 83 SSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 S YIGK I +ADG+ +G + + V S G+ A T +I + G+ ++ Sbjct: 88 SDYIGKEIMSADGTTTGTIKEVTVYSDGIIAQTEAGDKILLQAGVTVA 135 >gi|222530132|ref|YP_002574014.1| flagellar hook capping protein [Caldicellulosiruptor bescii DSM 6725] gi|222456979|gb|ACM61241.1| flagellar hook capping protein [Caldicellulosiruptor bescii DSM 6725] Length = 164 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 40/131 (30%), Positives = 69/131 (52%), Gaps = 13/131 (9%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 NT ++ + Q + S K LG+ FL LL+TQ+++QDP +PM+ E VAQLA FS +EQ Sbjct: 9 NTNISNSTQGSATSLGKNVLGKQEFLNLLVTQLRYQDPLKPMEDKEFVAQLAQFSALEQM 68 Query: 64 VQMNSTLQELLKSNNLAQASSYIGKNIT-----NADGSISGVVNAIQVSSTGLTAITVDN 118 +N + + +A S IG+ + + +I G +++I+V + + V+ Sbjct: 69 QNLNESFE-------FLKAQSMIGRYVVATNPADTSKTIEGRIDSIRVDGS-KVYLKVNG 120 Query: 119 TEIPITTGIRI 129 TE+ + Sbjct: 121 TEVLFDNVKEV 131 >gi|289578427|ref|YP_003477054.1| flagellar hook capping protein [Thermoanaerobacter italicus Ab9] gi|289528140|gb|ADD02492.1| flagellar hook capping protein [Thermoanaerobacter italicus Ab9] Length = 131 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 43/138 (31%), Positives = 73/138 (52%), Gaps = 16/138 (11%) Query: 1 MEINTEVNPTQ-QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59 ME+NT + + S+ SKK LG+D FLKLL+ Q+K+Q+P PM E +AQLA FS Sbjct: 1 MEVNTNYSFSNVYNNSEITSKKQLGKDDFLKLLVAQLKNQNPLNPMDDKEFIAQLAQFST 60 Query: 60 MEQSVQMNSTLQELLKSNNLAQASSYIGK----NITNADGS---ISGVVNAIQVSSTGLT 112 +EQ +N++ + +A + +GK +T+ +G + G V+A+ Sbjct: 61 LEQMQNLNTSF-------SAVRAINLLGKNIYATVTDNNGESKAVEGKVDAV-YKQNEEY 112 Query: 113 AITVDNTEIPITTGIRIS 130 + V+ ++P+ +S Sbjct: 113 FLEVNGIDVPLDAVTAVS 130 >gi|227820880|ref|YP_002824850.1| flagellar basal body rod modification protein [Sinorhizobium fredii NGR234] gi|227339879|gb|ACP24097.1| predicted flagellar hook capping protein FlgD [Sinorhizobium fredii NGR234] Length = 148 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 63/108 (58%), Positives = 84/108 (77%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82 L +FLKLLI Q+++QDPT+PM A+EQ++QLA FSQ+EQS++ NS L+ LL S +L QA Sbjct: 33 LNYQSFLKLLIAQMQNQDPTDPMDATEQISQLATFSQVEQSIKTNSNLESLLASESLTQA 92 Query: 83 SSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 S+YIGK IT++DG SGVV ++V+S G+TAIT D EI I TGI +S Sbjct: 93 STYIGKTITSSDGKTSGVVAEVEVTSDGVTAITTDGKEIAIETGISVS 140 >gi|325289232|ref|YP_004265413.1| flagellar hook capping protein [Syntrophobotulus glycolicus DSM 8271] gi|324964633|gb|ADY55412.1| flagellar hook capping protein [Syntrophobotulus glycolicus DSM 8271] Length = 263 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 40/132 (30%), Positives = 70/132 (53%), Gaps = 7/132 (5%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 +N+ T S + +L ++ FL LL+TQ+K+QDP P ++E V+QLA FS +EQ Sbjct: 6 VNSTSYTTAGTASSRDTSTSLDKEDFLNLLVTQLKYQDPLNPSDSTEYVSQLAQFSLLEQ 65 Query: 63 SVQMNSTLQELLKSNNLAQASSYIGKNITNADG---SISGVVNAIQVSSTGLTAITVDNT 119 MN++L+ L L YI ++T + G ++ G V+++ + S G A+ V Sbjct: 66 MTNMNTSLEAL---EALTMTGKYITASVTGSSGETTTVEGTVDSVTM-SNGEAALVVGGK 121 Query: 120 EIPITTGIRISN 131 I ++ + + Sbjct: 122 SIELSDVCAVYD 133 >gi|167037662|ref|YP_001665240.1| flagellar hook capping protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167040323|ref|YP_001663308.1| flagellar hook capping protein [Thermoanaerobacter sp. X514] gi|300914407|ref|ZP_07131723.1| flagellar hook capping protein [Thermoanaerobacter sp. X561] gi|307724357|ref|YP_003904108.1| flagellar hook capping protein [Thermoanaerobacter sp. X513] gi|320116077|ref|YP_004186236.1| flagellar hook capping protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166854563|gb|ABY92972.1| flagellar hook capping protein [Thermoanaerobacter sp. X514] gi|166856496|gb|ABY94904.1| flagellar hook capping protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|300889342|gb|EFK84488.1| flagellar hook capping protein [Thermoanaerobacter sp. X561] gi|307581418|gb|ADN54817.1| flagellar hook capping protein [Thermoanaerobacter sp. X513] gi|319929168|gb|ADV79853.1| flagellar hook capping protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 131 Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 49/137 (35%), Positives = 71/137 (51%), Gaps = 16/137 (11%) Query: 1 MEINTEVNPTQ-QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59 M+INT N T S LG+D FLKLL+TQ+K+QDP PM E +AQLA FS Sbjct: 1 MDINTNYNVTSIYNNRVSTLNSQLGKDDFLKLLVTQLKNQDPLNPMDDREFIAQLAQFST 60 Query: 60 MEQSVQMNSTLQELLKSNNLAQASSYIGK----NITNADG---SISGVVNAIQVSSTGLT 112 +EQ MNS++ N +A + IGK IT+ +G ++ G V+ + G Sbjct: 61 LEQMQNMNSSI-------NAIRAINLIGKNIYATITDNNGNSRTVIGKVD-VVYKQNGEY 112 Query: 113 AITVDNTEIPITTGIRI 129 + V+ +IP+ + Sbjct: 113 FLEVNGIDIPLDAVTAV 129 >gi|326389476|ref|ZP_08211043.1| flagellar hook capping protein [Thermoanaerobacter ethanolicus JW 200] gi|325994481|gb|EGD52906.1| flagellar hook capping protein [Thermoanaerobacter ethanolicus JW 200] Length = 131 Score = 108 bits (270), Expect = 2e-22, Method: Composition-based stats. Identities = 50/138 (36%), Positives = 76/138 (55%), Gaps = 16/138 (11%) Query: 1 MEINTEVNPTQQEFSK-SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59 M+INT N T ++ + SK LG+D FLKLL+TQ+K+QDP PM E +AQLA FS Sbjct: 1 MDINTNYNITTVYTNRVTTSKDQLGKDDFLKLLVTQLKNQDPLNPMDDREFIAQLAQFST 60 Query: 60 MEQSVQMNSTLQELLKSNNLAQASSYIGK----NITNADG---SISGVVNAIQVSSTGLT 112 +EQ MNS+ N +A + IGK IT+ +G +++G V+ + G Sbjct: 61 LEQMQNMNSSF-------NAVRAINLIGKNIYATITDNNGNSQTVTGKVD-VVYKQNGEY 112 Query: 113 AITVDNTEIPITTGIRIS 130 + V+ ++P+ +S Sbjct: 113 FLQVNGIDVPVDAVTAVS 130 >gi|163850128|ref|YP_001638171.1| flagellar basal body rod modification protein [Methylobacterium extorquens PA1] gi|218528732|ref|YP_002419548.1| flagellar basal body rod modification protein [Methylobacterium chloromethanicum CM4] gi|163661733|gb|ABY29100.1| flagellar hook capping protein [Methylobacterium extorquens PA1] gi|218521035|gb|ACK81620.1| flagellar hook capping protein [Methylobacterium chloromethanicum CM4] Length = 138 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 49/109 (44%), Positives = 74/109 (67%) Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ 81 + D FL LL+ Q+++QDPT+PM ++E V QLA FSQ+EQ+ + N L LL S+ L Q Sbjct: 30 KMNADTFLTLLMAQLQNQDPTKPMDSTEYVGQLATFSQVEQATKTNQKLDSLLTSSFLNQ 89 Query: 82 ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 A + IG+++T+ADG ISG V +++V+ G+ A D E+ + +GI IS Sbjct: 90 ADAIIGRSLTSADGLISGTVQSVRVTGDGVMAKLTDGREMLLASGISIS 138 >gi|20807882|ref|NP_623053.1| flagellar hook capping protein [Thermoanaerobacter tengcongensis MB4] gi|20516447|gb|AAM24657.1| Flagellar hook capping protein [Thermoanaerobacter tengcongensis MB4] Length = 131 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 47/140 (33%), Positives = 72/140 (51%), Gaps = 20/140 (14%) Query: 1 MEINTEVN---PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVF 57 M +NT + P+ Q +KSK LG+D FL LL+TQ+K+QDP P+ E +AQLA F Sbjct: 1 MNVNTNYSVLPPSNQNKVTTKSK--LGKDDFLMLLVTQLKNQDPLNPVDDKEFLAQLAQF 58 Query: 58 SQMEQSVQMNSTLQELLKSNNLAQASSYIGKNI--TNADG-----SISGVVNAIQVSSTG 110 S +EQ +N + + +A + IGKN+ T DG + G V+A+ G Sbjct: 59 SALEQMQNLNESFNSV-------KAIALIGKNVYATINDGNGNYKEVFGKVDAV-YRENG 110 Query: 111 LTAITVDNTEIPITTGIRIS 130 + V +IP+ ++ Sbjct: 111 QYFLKVKGLDIPLDAVRAVT 130 >gi|241203129|ref|YP_002974225.1| flagellar basal body rod modification protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857019|gb|ACS54686.1| flagellar hook capping protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 144 Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats. Identities = 55/114 (48%), Positives = 83/114 (72%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77 + K TL D FL+LLI Q+K+QDPT+P+ ASEQ++QLA FSQ+EQ++Q N+ L LL S+ Sbjct: 22 QQKATLNYDNFLQLLIAQMKNQDPTDPVDASEQMSQLASFSQVEQTIQTNTKLDTLLASS 81 Query: 78 NLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 +L QASSY+GK + +ADG++ G + +++V S G+ A T D I + GI +++ Sbjct: 82 SLTQASSYVGKYMESADGTVKGTIESVKVYSDGIIATTTDGGNILVQAGITVAD 135 >gi|118589961|ref|ZP_01547365.1| flagellar basal-body rod modification protein D [Stappia aggregata IAM 12614] gi|118437458|gb|EAV44095.1| flagellar basal-body rod modification protein D [Stappia aggregata IAM 12614] Length = 131 Score = 108 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 51/126 (40%), Positives = 79/126 (62%), Gaps = 3/126 (2%) Query: 7 VNPTQQEFSKSKSKKTL--GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 V+ T+ S + ++K L D FL L++ Q+++QDPT PM ASEQ+AQLA FSQ+EQS+ Sbjct: 7 VSATEGAASPATAQKQLTVDYDTFLHLMMAQMQNQDPTNPMDASEQLAQLASFSQVEQSI 66 Query: 65 QMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPIT 124 Q N+ L+ LL + + Q IG+ +T+A+G+ +GVV ++V S G + I + Sbjct: 67 QTNAKLETLLTNLSFGQVDDLIGRTVTDANGT-TGVVEKVEVYSDGTVLALDNGKGILLG 125 Query: 125 TGIRIS 130 G+ IS Sbjct: 126 PGVTIS 131 >gi|114706623|ref|ZP_01439524.1| flagellar basal-body rod modification protein D [Fulvimarina pelagi HTCC2506] gi|114538015|gb|EAU41138.1| flagellar basal-body rod modification protein D [Fulvimarina pelagi HTCC2506] Length = 136 Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats. Identities = 39/128 (30%), Positives = 69/128 (53%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 + Q + DAFL+LL+ Q+K+QDP P +++E +AQ A F+ +EQ Sbjct: 9 VTQAQGAAAQNGITKGGAPEMDYDAFLQLLVAQMKNQDPLNPAESTEYIAQFATFANVEQ 68 Query: 63 SVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIP 122 S+Q N+ L+ ++ + L QA + IG+ +T+ DG+ G V +I+ G+ A I Sbjct: 69 SIQTNTRLESMMTVSALTQADALIGRTLTSLDGATRGTVTSIRAVDGGIQATIEGGETIM 128 Query: 123 ITTGIRIS 130 + G+ ++ Sbjct: 129 LGDGVSVA 136 >gi|90418360|ref|ZP_01226272.1| flagellar hook capping protein FlgD [Aurantimonas manganoxydans SI85-9A1] gi|90338032|gb|EAS51683.1| flagellar hook capping protein FlgD [Aurantimonas manganoxydans SI85-9A1] Length = 134 Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats. Identities = 45/126 (35%), Positives = 72/126 (57%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 T Q S + K + DAFLKLL+ ++ +QDP P ++E VAQ A FS +EQ++ Sbjct: 9 TSATAAQTGISAATQKTGMDYDAFLKLLVAEMSNQDPLNPTDSTEYVAQFASFSSVEQAI 68 Query: 65 QMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPIT 124 Q N L ++ + L QA+S IG+ T+ADG++SG V A++ + + AI +P+ Sbjct: 69 QTNKKLDSMMTVSALTQANSLIGQTATSADGTLSGKVAAVRAVNGVVEAILESGDSLPLI 128 Query: 125 TGIRIS 130 +G + Sbjct: 129 SGTTVG 134 >gi|312621575|ref|YP_004023188.1| flagellar hook capping protein [Caldicellulosiruptor kronotskyensis 2002] gi|312202042|gb|ADQ45369.1| flagellar hook capping protein [Caldicellulosiruptor kronotskyensis 2002] Length = 164 Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats. Identities = 40/131 (30%), Positives = 69/131 (52%), Gaps = 13/131 (9%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 NT ++ + Q + S K LG+ FL LL+TQ+++QDP +PM+ E VAQLA FS +EQ Sbjct: 9 NTNISNSTQGSATSLGKNVLGKQEFLNLLVTQLRYQDPLKPMEDKEFVAQLAQFSALEQM 68 Query: 64 VQMNSTLQELLKSNNLAQASSYIGKNIT-----NADGSISGVVNAIQVSSTGLTAITVDN 118 +N + + +A S IG+ + + +I G +++I+V + + V+ Sbjct: 69 QNLNESFE-------FLKAQSMIGRYVVATNPADTSKTIEGRIDSIRVDGS-KVYLKVNG 120 Query: 119 TEIPITTGIRI 129 TE+ + Sbjct: 121 TEVLSDNVKEV 131 >gi|304392488|ref|ZP_07374428.1| flagellar hook capping protein [Ahrensia sp. R2A130] gi|303295118|gb|EFL89478.1| flagellar hook capping protein [Ahrensia sp. R2A130] Length = 131 Score = 106 bits (266), Expect = 7e-22, Method: Composition-based stats. Identities = 43/115 (37%), Positives = 74/115 (64%), Gaps = 2/115 (1%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75 ++ K + D+FLKLL+ ++++QDPT+PM++SE VAQLA FS +EQS+Q N+ L LL Sbjct: 19 QAAQKAQVDYDSFLKLLVAELENQDPTKPMESSEFVAQLATFSGVEQSIQTNTKLDALLA 78 Query: 76 SNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 N L QA + IG+ +T D ++G+V+++ + S + + D + ++ +S Sbjct: 79 GNVLGQAGTMIGRTVTAGD--VTGLVDSVAIESGSASLVLDDGRRVALSAVSGVS 131 >gi|320538207|ref|ZP_08038102.1| flagellar hook capping protein [Treponema phagedenis F0421] gi|2196891|gb|AAB61250.1| FlgD [Treponema phagedenis] gi|320145024|gb|EFW36745.1| flagellar hook capping protein [Treponema phagedenis F0421] Length = 163 Score = 106 bits (266), Expect = 7e-22, Method: Composition-based stats. Identities = 42/131 (32%), Positives = 73/131 (55%), Gaps = 4/131 (3%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 +E++ Q E K K+ LG++ FL+LLI Q+ HQDPT PM+ ++ VAQ+A F+ + Sbjct: 26 LELDVNAFNKQIEIDGRKPKQELGKNDFLQLLIAQLSHQDPTAPMEDTQFVAQMAQFTSL 85 Query: 61 EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSI--SGVVNAIQVSSTGLTAITVDN 118 EQ ++ + ++L + ++A + +GK + DGSI SGV+ A + + + VD Sbjct: 86 EQMTNVSQSFEKLNNLLSGSEAVNAVGKQVNIEDGSIKVSGVITA--ATRGEIPQVQVDG 143 Query: 119 TEIPITTGIRI 129 +T + Sbjct: 144 KWYDWSTVKTV 154 >gi|254559273|ref|YP_003066368.1| Basal body rod modification protein FlgD [Methylobacterium extorquens DM4] gi|254266551|emb|CAX22315.1| FlgD ( BASAL-BODY ROD MODIFICATION PROTEIN)/hook formation protein [Methylobacterium extorquens DM4] Length = 138 Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats. Identities = 48/109 (44%), Positives = 73/109 (66%) Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ 81 + D FL LL+ Q+++QDPT+PM ++E V QLA FSQ+EQ+ + N L LL S+ L Q Sbjct: 30 KMNADTFLTLLMAQLQNQDPTKPMDSTEYVGQLATFSQVEQATKTNQKLDSLLTSSFLNQ 89 Query: 82 ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 A + IG+++T+ADG SG V +++V+ G+ A D E+ + +GI IS Sbjct: 90 ADAIIGRSLTSADGLTSGTVQSVRVTGDGVMAKLTDGREMLLASGISIS 138 >gi|315186382|gb|EFU20142.1| flagellar hook capping protein [Spirochaeta thermophila DSM 6578] Length = 145 Score = 106 bits (265), Expect = 9e-22, Method: Composition-based stats. Identities = 39/112 (34%), Positives = 60/112 (53%), Gaps = 4/112 (3%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79 K+ LG+D FLKLL+ Q+ HQDPT+P++ E +AQ+A FS +EQ M+ +L Sbjct: 33 KQELGKDDFLKLLVAQLTHQDPTQPLEDKEFIAQMAQFSTLEQMTNMSQEFSKLALRLQS 92 Query: 80 AQASSYIGKNI--TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129 +QA S +GK + N D ISGVV ++ + V+ + + Sbjct: 93 SQAFSLLGKTVVIKNGDEEISGVVEEVR--GREFPQLLVNGRYFDMNQIESV 142 >gi|240137262|ref|YP_002961731.1| FlgD (basal-body rod modification protein)/hook formation protein [Methylobacterium extorquens AM1] gi|240007228|gb|ACS38454.1| FlgD (basal-body rod modification protein)/hook formation protein [Methylobacterium extorquens AM1] Length = 135 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 48/109 (44%), Positives = 73/109 (66%) Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ 81 + D FL LL+ Q+++QDPT+PM ++E V QLA FSQ+EQ+ + N L LL S+ L Q Sbjct: 27 KMNADTFLTLLMAQLQNQDPTKPMDSTEYVGQLATFSQVEQATKTNQKLDSLLTSSFLNQ 86 Query: 82 ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 A + IG+++T+ADG SG V +++V+ G+ A D E+ + +GI IS Sbjct: 87 ADAIIGRSLTSADGLTSGTVQSVRVTGDGVMAKLTDGREMLLASGISIS 135 >gi|188579930|ref|YP_001923375.1| flagellar basal body rod modification protein [Methylobacterium populi BJ001] gi|179343428|gb|ACB78840.1| flagellar hook capping protein [Methylobacterium populi BJ001] Length = 138 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 48/110 (43%), Positives = 74/110 (67%) Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA 80 + D FL+LL+ Q+++QDPT+PM ++E V QLA FSQ+EQ+ + N L LL S+ L Sbjct: 29 SKMNADTFLQLLMAQLQNQDPTKPMDSTEYVGQLASFSQVEQATKTNQKLDSLLASSFLN 88 Query: 81 QASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 QA + IG++IT+ADG +G V +++V+ G+ A D E+ + +GI IS Sbjct: 89 QADAIIGRSITSADGLTTGTVQSVRVTGDGVMAKLTDGREMLLASGISIS 138 >gi|15639715|ref|NP_219165.1| flagellar basal body rod modification protein [Treponema pallidum subsp. pallidum str. Nichols] gi|189025953|ref|YP_001933725.1| flagellar basal body rod modification protein [Treponema pallidum subsp. pallidum SS14] gi|2196902|gb|AAB61259.1| FlgD [Treponema pallidum] gi|3323034|gb|AAC65697.1| flagellar hook assembly scaffolding protein (flgD) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018528|gb|ACD71146.1| flagellar hook assembly scaffolding protein [Treponema pallidum subsp. pallidum SS14] gi|291060092|gb|ADD72827.1| flagellar hook capping protein [Treponema pallidum subsp. pallidum str. Chicago] Length = 153 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 40/133 (30%), Positives = 72/133 (54%), Gaps = 4/133 (3%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 +E++ V Q E +K+ LG+D FL LLI Q+ HQDPT PM+ ++ +AQ+A FS + Sbjct: 19 LEMDVRVINKQLEAGARSAKRELGKDDFLHLLIAQLTHQDPTAPMQDTQFIAQMAQFSSL 78 Query: 61 EQSVQMNSTLQELLKSNNLAQASSYIGK--NITNADGSISGVVNAIQVSSTGLTAITVDN 118 EQ M++ +++L +A +GK +T AD ++ G+++A+ + + V + Sbjct: 79 EQMANMSAQVEKLGTLFGNTEALQAVGKMVEVTEADNTVRGLISAVTRAD--KPQVRVGS 136 Query: 119 TEIPITTGIRISN 131 I++ Sbjct: 137 HWYEWEHVKVIAD 149 >gi|218671388|ref|ZP_03521058.1| flagellar basal body rod modification protein [Rhizobium etli GR56] Length = 159 Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 57/115 (49%), Positives = 85/115 (73%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 ++ K TL D FL+LLI Q+K+QDPT+PM ASEQ++QLA FSQ+EQ++Q N+ L LL S Sbjct: 35 AQKKATLNYDNFLQLLIAQMKNQDPTDPMDASEQMSQLASFSQVEQTIQTNTKLDTLLSS 94 Query: 77 NNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 ++L QASSY+GK + +ADG++ G V +++V S G+ A T D +I + GI +++ Sbjct: 95 SSLTQASSYVGKYMESADGTVKGTVESVKVYSDGIIATTTDGGKILVQAGITVAD 149 >gi|78043304|ref|YP_359846.1| flagellar hook assembly protein [Carboxydothermus hydrogenoformans Z-2901] gi|77995419|gb|ABB14318.1| flagellar hook assembly protein [Carboxydothermus hydrogenoformans Z-2901] Length = 135 Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 39/123 (31%), Positives = 68/123 (55%), Gaps = 4/123 (3%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69 + + S++K L +DAFLK+ + Q+++QDP P +E +A+LA F +EQ + Sbjct: 13 STSANAASQTKLNLDKDAFLKIFLAQLQYQDPLNPADGTEFIAELAQFGMLEQLTNLTDA 72 Query: 70 LQELLKSNNLAQASSYIGKNI---TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTG 126 L +LL+ AQA++ IGK + T A+ + GVV+A++ S ++ V+ E Sbjct: 73 LTKLLQFEQKAQAAALIGKTVKIATAAETLVEGVVSAVRWSGD-QISLVVNGQEYSPDKV 131 Query: 127 IRI 129 I + Sbjct: 132 IEV 134 >gi|134300241|ref|YP_001113737.1| flagellar hook capping protein [Desulfotomaculum reducens MI-1] gi|134052941|gb|ABO50912.1| flagellar hook capping protein [Desulfotomaculum reducens MI-1] Length = 185 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 38/134 (28%), Positives = 68/134 (50%), Gaps = 5/134 (3%) Query: 1 MEIN--TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58 ME+N + + +S KTL +DAFL+++I Q+++QDP+ PM +S+ + Q+A+F+ Sbjct: 1 MEVNQTNNSDLYYENRKTKESVKTLDKDAFLQIMIAQLRYQDPSSPMDSSKFIEQMAMFT 60 Query: 59 QMEQSVQMNSTLQELLKSNNLAQASSYIGKNI--TNADGSISGVVNAIQVSSTGLTAITV 116 +EQ +N+ ++ L L ASS IGK + + + G V + + I V Sbjct: 61 TLEQMTNLNTNMERLYHLQELNHASSLIGKRVNLIAEEEQVIGEVERVTLGEN-SVNIWV 119 Query: 117 DNTEIPITTGIRIS 130 + I + Sbjct: 120 AGHPYSLDQVISVE 133 >gi|312126826|ref|YP_003991700.1| flagellar hook capping protein [Caldicellulosiruptor hydrothermalis 108] gi|311776845|gb|ADQ06331.1| flagellar hook capping protein [Caldicellulosiruptor hydrothermalis 108] Length = 164 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 43/131 (32%), Positives = 72/131 (54%), Gaps = 13/131 (9%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 NT V+ + Q + S +K LG+ FL LL+TQ+++QDP +PM+ E VAQLA FS +EQ Sbjct: 9 NTNVSNSTQSLAASSAKNVLGKQEFLNLLVTQLRYQDPLKPMEDKEFVAQLAQFSALEQM 68 Query: 64 VQMNSTLQELLKSNNLAQASSYIGKNIT-----NADGSISGVVNAIQVSSTGLTAITVDN 118 +N +++ L +A S IG+ + +A I G V++I++ + + V+ Sbjct: 69 QNLNESVE-------LLKAQSMIGRYVVATSPQDASKLIEGRVDSIKIDGS-KVYLKVNG 120 Query: 119 TEIPITTGIRI 129 TE+ + Sbjct: 121 TEVLSDNVKEV 131 >gi|167464162|ref|ZP_02329251.1| Flagellar hook capping protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 197 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 41/130 (31%), Positives = 71/130 (54%), Gaps = 10/130 (7%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 ++ + +S +LG+D FLK+LI Q+ +Q+P +PM E +AQ+A F+ +EQ M Sbjct: 27 KSETKTMRSGGNSSLGKDDFLKILIAQLVNQNPMDPMNDKEFIAQMAQFTAVEQMTFMAE 86 Query: 69 TLQELLKSNNLAQASSYIGKNITNADG-------SISGVVNAIQVSSTGLTAITVDNTEI 121 + +L +S L AS+ IGK+++ + GVV+AI + G+ + + EI Sbjct: 87 QMYDLRQS--LGGASTLIGKHVSYLTVNEKQEVITKQGVVDAI-IMKNGMAHVVIGKEEI 143 Query: 122 PITTGIRISN 131 PI R+ + Sbjct: 144 PIDLITRVGD 153 >gi|302392389|ref|YP_003828209.1| flagellar hook capping protein [Acetohalobium arabaticum DSM 5501] gi|302204466|gb|ADL13144.1| flagellar hook capping protein [Acetohalobium arabaticum DSM 5501] Length = 138 Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats. Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 5/125 (4%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 + +++ +G+D FL+L +TQ+K+Q+P EPM E +AQ A F+ MEQ MN Sbjct: 13 NVEGTGKQTEDSNKMGKDEFLELFVTQLKNQNPLEPMDNKEFIAQTAQFTSMEQMKNMNQ 72 Query: 69 TLQELLKSNNLAQASSYIGKNITNAD----GSISGVVNAIQVSSTGLTAITVDNTEIPIT 124 L++ L L Q SS IGK + D I+G V ++++ +G + ++ E + Sbjct: 73 NLEKFLGMQKLTQVSSLIGKEVKALDSDSGEEITGEVEKVKMADSG-PKLIINGNEYEMG 131 Query: 125 TGIRI 129 + I Sbjct: 132 SVNEI 136 >gi|261407977|ref|YP_003244218.1| flagellar hook capping protein [Paenibacillus sp. Y412MC10] gi|261284440|gb|ACX66411.1| flagellar hook capping protein [Paenibacillus sp. Y412MC10] Length = 186 Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 46/126 (36%), Positives = 75/126 (59%), Gaps = 11/126 (8%) Query: 14 FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73 +K+ + + LG+D FL +LITQ++HQDP +PM+ E +AQ+A F+ +EQ + +N+ L + Sbjct: 21 STKNGNGQELGKDQFLSILITQLRHQDPLQPMQDREFIAQMAQFTSLEQLMNINTQLTAM 80 Query: 74 LKSNNLAQASSYIGKNITN----ADGS----ISGVVNAIQVSSTGLTAITVDNTEIPITT 125 S +L ASS IGK I+ DGS SG+V++I + G+ V E+ + Sbjct: 81 --SQSLGAASSLIGKQISWMFKPEDGSDSVMKSGLVDSI-IVRDGVHYAKVGENEVSLDQ 137 Query: 126 GIRISN 131 ++I N Sbjct: 138 IVKIEN 143 >gi|182680452|ref|YP_001834598.1| flagellar basal body rod modification protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182636335|gb|ACB97109.1| flagellar hook capping protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 141 Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats. Identities = 49/113 (43%), Positives = 73/113 (64%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78 T+ +FL+LL+ ++K+QDPT P ++ ++QLA FS +EQ VQ NS L LL +++ Sbjct: 29 PPATVDYSSFLQLLVAELKNQDPTSPTDPTQYMSQLASFSSVEQQVQTNSKLDSLLTASS 88 Query: 79 LAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 L QA + IGK IT+ADGSISG V ++ VSS TA + ++ + GI I + Sbjct: 89 LGQAETVIGKTITSADGSISGKVQSVTVSSGTATATLDNGGQVKLADGISIGS 141 >gi|307718605|ref|YP_003874137.1| flagellar hook assembly protein [Spirochaeta thermophila DSM 6192] gi|306532330|gb|ADN01864.1| flagellar hook assembly protein [Spirochaeta thermophila DSM 6192] Length = 145 Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats. Identities = 39/112 (34%), Positives = 61/112 (54%), Gaps = 4/112 (3%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79 K+ LG+D FLKLL+ Q+ HQDPT+P++ E +AQ+A FS +EQ M+ +L Sbjct: 33 KQELGKDDFLKLLVAQLTHQDPTQPLEDKEFIAQMAQFSTLEQMTNMSQEFSKLALRLQS 92 Query: 80 AQASSYIGKNITNADG--SISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129 +QA S +GK + +G ISGVV ++ T + V+ + + Sbjct: 93 SQAFSLLGKTVVIKNGGQEISGVVEEVR--GTEFPQLLVNGRYFDMNQIESV 142 >gi|315648131|ref|ZP_07901232.1| flagellar hook capping protein [Paenibacillus vortex V453] gi|315276777|gb|EFU40120.1| flagellar hook capping protein [Paenibacillus vortex V453] Length = 188 Score = 103 bits (258), Expect = 6e-21, Method: Composition-based stats. Identities = 46/129 (35%), Positives = 76/129 (58%), Gaps = 12/129 (9%) Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 +K+ + + LG+D FL +LITQ++HQDP +PM+ E +AQ+A F+ +EQ + +N+ L Sbjct: 19 NVSNKNGNGQELGKDQFLSILITQLRHQDPLQPMQDREFIAQMAQFTSLEQLMNINTQLT 78 Query: 72 ELLKSNNLAQASSYIGKNITN----ADGS-----ISGVVNAIQVSSTGLTAITVDNTEIP 122 + S +L ASS IGK I+ DGS SG+V++I V G+ + +E+ Sbjct: 79 AM--SQSLGAASSLIGKQISWMFKPEDGSENTVMKSGIVDSIIVR-DGIHYAKIGESEVA 135 Query: 123 ITTGIRISN 131 + ++I N Sbjct: 136 LDQILKIEN 144 >gi|329929292|ref|ZP_08283045.1| flagellar hook capping protein [Paenibacillus sp. HGF5] gi|328936661|gb|EGG33104.1| flagellar hook capping protein [Paenibacillus sp. HGF5] Length = 186 Score = 103 bits (258), Expect = 6e-21, Method: Composition-based stats. Identities = 47/128 (36%), Positives = 76/128 (59%), Gaps = 11/128 (8%) Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 +K+ + + LG+D FL +LITQ++HQDP +PM+ E +AQ+A F+ +EQ + +N+ L Sbjct: 19 NVSTKNGNGQELGKDQFLSILITQLRHQDPLQPMQDREFIAQMAQFTSLEQLMNINTQLT 78 Query: 72 ELLKSNNLAQASSYIGKNITN----ADGS----ISGVVNAIQVSSTGLTAITVDNTEIPI 123 + S +L ASS IGK I+ DGS SG+V++I V G+ V +E+ + Sbjct: 79 AM--SQSLGAASSLIGKQISWMFKPEDGSDSVMKSGLVDSIIVRE-GVHYAKVGESEVSL 135 Query: 124 TTGIRISN 131 ++I N Sbjct: 136 DQIVKIEN 143 >gi|147678417|ref|YP_001212632.1| flagellar hook capping protein [Pelotomaculum thermopropionicum SI] gi|146274514|dbj|BAF60263.1| flagellar hook capping protein [Pelotomaculum thermopropionicum SI] Length = 132 Score = 103 bits (258), Expect = 6e-21, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 66/132 (50%), Gaps = 4/132 (3%) Query: 1 MEINTEVNPTQQEFSKSKSK-KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59 M++N+ + + S+ K L ++AFL+L + Q+K+QDP P ++ + QL+ FS Sbjct: 1 MQVNSVTSEYYRPPDNSREPLKALDKNAFLQLFVAQLKNQDPLSPQDSNTFITQLSQFSM 60 Query: 60 MEQSVQMNSTLQELLKSNNLAQASSYIGKNIT--NADGSISGVVNAIQVSSTGLTAITVD 117 +EQ +N + + L +A++ +G+ + DG +SG V + V G + V+ Sbjct: 61 LEQLASLNEEVTLARRFQELGEAAALLGRQVKVQTGDGDVSGQVEKVAVVE-GEVRLFVN 119 Query: 118 NTEIPITTGIRI 129 T + + Sbjct: 120 GTGYGLDKVTEV 131 >gi|169827127|ref|YP_001697285.1| hypothetical protein Bsph_1557 [Lysinibacillus sphaericus C3-41] gi|168991615|gb|ACA39155.1| Hypothetical ylxG protein [Lysinibacillus sphaericus C3-41] Length = 228 Score = 103 bits (258), Expect = 6e-21, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 16/134 (11%) Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 ++ +K LG+DAFL+LLITQ++HQDPT PM E ++Q+A FS +EQ M ++ Sbjct: 23 KKPTKQTGNSELGKDAFLQLLITQLQHQDPTNPMNDREFISQMAQFSSLEQMQNMTKAVE 82 Query: 72 ELLKSNNLAQASSY---IGKNITNAD-------------GSISGVVNAIQVSSTGLTAIT 115 LL S Q +Y +GK + + SGV+ +++ + Sbjct: 83 SLLASQQQTQMMNYATFVGKEVKWHEISDKTDEKGEPIVNEGSGVIESLKFVDGSVVFKL 142 Query: 116 VDNTEIPITTGIRI 129 D EI I Sbjct: 143 ADGKEITPGNISGI 156 >gi|297584042|ref|YP_003699822.1| flagellar hook capping protein [Bacillus selenitireducens MLS10] gi|297142499|gb|ADH99256.1| flagellar hook capping protein [Bacillus selenitireducens MLS10] Length = 161 Score = 103 bits (258), Expect = 7e-21, Method: Composition-based stats. Identities = 42/137 (30%), Positives = 74/137 (54%), Gaps = 14/137 (10%) Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67 + +++ +K +G+DAFLKLLITQ+++QDP +PM+ E ++Q+A FS +EQ MN Sbjct: 16 DYVREQRAKGTGDSEMGKDAFLKLLITQLQNQDPLDPMEDKEFISQMANFSSLEQMTNMN 75 Query: 68 STLQELLKSNNLAQ---ASSYIGK------NITNADG-----SISGVVNAIQVSSTGLTA 113 + + L+S +Q S IGK + N +G ++S +V A++ T Sbjct: 76 ENMNKFLESQQQSQFFSHSDMIGKQIEWQEEVKNENGDKRMETMSAIVQAVKFKDGIATI 135 Query: 114 ITVDNTEIPITTGIRIS 130 +T E+ + +I+ Sbjct: 136 LTESGKELSVDDIQKIA 152 >gi|312876504|ref|ZP_07736487.1| flagellar hook capping protein [Caldicellulosiruptor lactoaceticus 6A] gi|311796715|gb|EFR13061.1| flagellar hook capping protein [Caldicellulosiruptor lactoaceticus 6A] Length = 164 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 44/131 (33%), Positives = 70/131 (53%), Gaps = 13/131 (9%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 +T V + Q + S +K LG+ FL LL+TQ+++QDP +PM+ E VAQLA FS +EQ Sbjct: 9 STNVPSSTQGLATSSTKNVLGKQEFLNLLVTQLRYQDPLKPMEDKEFVAQLAQFSALEQM 68 Query: 64 VQMNSTLQELLKSNNLAQASSYIGKNIT-----NADGSISGVVNAIQVSSTGLTAITVDN 118 +N + + L +A + IG+ I ++ I G V +++V + + V+N Sbjct: 69 QNLNESFE-------LLKAQNMIGRYIVATNPQDSSKQIEGRVESVKVDGS-KVYLKVNN 120 Query: 119 TEIPITTGIRI 129 TEI I Sbjct: 121 TEISSENVKEI 131 >gi|291484180|dbj|BAI85255.1| flagellar basal body rod modification protein [Bacillus subtilis subsp. natto BEST195] Length = 140 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 74/133 (55%), Gaps = 5/133 (3%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 I++E ++ + S + +LG+D FLK+L+TQ+++QDP P+ E ++Q+A FS +EQ Sbjct: 4 ISSEYKLPEKTNTVSTNNSSLGKDEFLKILMTQVQNQDPLNPVDDKEFISQMATFSSLEQ 63 Query: 63 SVQMNSTLQELLKSNN-LAQASSYIGKNITNADGSI----SGVVNAIQVSSTGLTAITVD 117 + +N+T+ + +++ + ++GK ++ DG +G V++++ + D Sbjct: 64 MMNLNTTMTQFVENQDPFTTYVDWMGKEVSWTDGKSATDKTGTVSSVKHFKGNYYLVLDD 123 Query: 118 NTEIPITTGIRIS 130 TEI + + Sbjct: 124 GTEISPANVMSVG 136 >gi|16078691|ref|NP_389510.1| flagellar basal body rod modification protein [Bacillus subtilis subsp. subtilis str. 168] gi|221309505|ref|ZP_03591352.1| flagellar basal body rod modification protein [Bacillus subtilis subsp. subtilis str. 168] gi|221313829|ref|ZP_03595634.1| flagellar basal body rod modification protein [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318752|ref|ZP_03600046.1| flagellar basal body rod modification protein [Bacillus subtilis subsp. subtilis str. JH642] gi|221323024|ref|ZP_03604318.1| flagellar basal body rod modification protein [Bacillus subtilis subsp. subtilis str. SMY] gi|321315394|ref|YP_004207681.1| flagellar basal body rod modification protein [Bacillus subtilis BSn5] gi|140659|sp|P23455|YLXG_BACSU RecName: Full=FlaA locus uncharacterized protein ylxG; AltName: Full=ORF 8 gi|39911|emb|CAA39527.1| unnamed protein product [Bacillus subtilis subsp. subtilis str. 168] gi|2634000|emb|CAB13501.1| flagellar hook assembly protein [Bacillus subtilis subsp. subtilis str. 168] gi|320021668|gb|ADV96654.1| flagellar basal body rod modification protein [Bacillus subtilis BSn5] Length = 140 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 74/133 (55%), Gaps = 5/133 (3%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 I++E ++ + S + +LG+D FLK+L+TQ+++QDP P+ E ++Q+A FS +EQ Sbjct: 4 ISSEYKLPEKTNTVSTNNSSLGKDEFLKILMTQVQNQDPLNPIDDKEFISQMATFSSLEQ 63 Query: 63 SVQMNSTLQELLKSNN-LAQASSYIGKNITNADGSI----SGVVNAIQVSSTGLTAITVD 117 + +N+T+ + +++ + ++GK ++ DG +G V++++ + D Sbjct: 64 MMNLNTTMTQFVENQDPFTTYVDWMGKEVSWTDGKSATDKTGTVSSVKHFKGNYYLVLDD 123 Query: 118 NTEIPITTGIRIS 130 TEI + + Sbjct: 124 GTEISPANVMSVG 136 >gi|15615014|ref|NP_243317.1| flagellar basal body rod modification protein [Bacillus halodurans C-125] gi|10175071|dbj|BAB06170.1| flagellar hook assembly protein [Bacillus halodurans C-125] Length = 171 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 40/135 (29%), Positives = 68/135 (50%), Gaps = 15/135 (11%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 + + + LG+D FL++LI Q+++QDP PM E +AQ+A FS +EQ MNS + Sbjct: 14 ENRPKEQSNSGILGKDDFLRILIAQLQYQDPLNPMDDREFIAQMAQFSSLEQMTNMNSAI 73 Query: 71 QELLK---SNNLAQASSYIGKNITN-----------ADGSISGVVNAIQVSSTGLTAITV 116 Q+ +K S L Q S IGK +T + + V ++++ + G +I + Sbjct: 74 QQFVKQQTSQTLVQHSELIGKRVTWKRIIDIDEYRQKEELVENTVTSVRLETNGNVSIQL 133 Query: 117 D-NTEIPITTGIRIS 130 D I +++S Sbjct: 134 DSGRWISADQLVQVS 148 >gi|242280468|ref|YP_002992597.1| flagellar hook capping protein [Desulfovibrio salexigens DSM 2638] gi|242123362|gb|ACS81058.1| flagellar hook capping protein [Desulfovibrio salexigens DSM 2638] Length = 242 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 38/98 (38%), Positives = 60/98 (61%), Gaps = 6/98 (6%) Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72 ++ K K LGQD FLKLL+TQ+++QDP PM+ E +AQ+A FS +EQ Q+NS ++ Sbjct: 19 ASNQPKHKNQLGQDDFLKLLLTQMQNQDPANPMEDKEYMAQMAQFSSLEQLTQVNSNIKT 78 Query: 73 LLKSN---NLAQASSYIGKNITNADGSIS---GVVNAI 104 ++ +N + A +IGK + SIS G ++ + Sbjct: 79 MIDNNAQDQMVSAVGFIGKEVKAEGYSISRDNGKISKV 116 >gi|229017041|ref|ZP_04173961.1| Flagellar hook assembly protein [Bacillus cereus AH1273] gi|229023222|ref|ZP_04179733.1| Flagellar hook assembly protein [Bacillus cereus AH1272] gi|228738147|gb|EEL88632.1| Flagellar hook assembly protein [Bacillus cereus AH1272] gi|228744312|gb|EEL94394.1| Flagellar hook assembly protein [Bacillus cereus AH1273] Length = 192 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 10/139 (7%) Query: 3 INTEVNPTQQ----EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58 +N +P QQ S K+ + +D FLKL + +HQDP M ++ + Q A S Sbjct: 27 VNGVHSPVQQTNGVSASTQKTPGVMEKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLS 86 Query: 59 QMEQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLT 112 MEQ M + L + S L ++GK + DG ++G V ++++ Sbjct: 87 LMEQVQNMTKAVDSLRTTMYSTALDGGMKFLGKYVRGIDGEGNKVTGQVETVRLAENNDV 146 Query: 113 AITVDNTEIPITTGIRISN 131 + +DN + + RIS+ Sbjct: 147 QLVIDNKVVSLRFVERISD 165 >gi|257457612|ref|ZP_05622779.1| flagellar hook capping protein [Treponema vincentii ATCC 35580] gi|257444998|gb|EEV20074.1| flagellar hook capping protein [Treponema vincentii ATCC 35580] Length = 159 Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats. Identities = 39/131 (29%), Positives = 66/131 (50%), Gaps = 6/131 (4%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 ME++T Q K K+ LG+D FL+LL+ Q+ HQDPT PM+ ++ VAQ+A F+ + Sbjct: 29 MEVDTI--NKQNFPEGRKPKQELGKDDFLQLLVAQLTHQDPTSPMEDTQFVAQMAQFTSL 86 Query: 61 EQSVQMNSTLQELLKSNNLAQASSYIGKNI--TNADGSISGVVNAIQVSSTGLTAITVDN 118 EQ MN + L + + A + +GK + + G++SG + A + V+ Sbjct: 87 EQLTNMNQSFGTLNRLIGDSSAVNVVGKQVDIEQSGGTVSGTITAATRGEN--PQVQVNG 144 Query: 119 TEIPITTGIRI 129 + + Sbjct: 145 KWYAWSDVQTV 155 >gi|296133042|ref|YP_003640289.1| flagellar hook capping protein [Thermincola sp. JR] gi|296031620|gb|ADG82388.1| flagellar hook capping protein [Thermincola potens JR] Length = 146 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 40/139 (28%), Positives = 69/139 (49%), Gaps = 12/139 (8%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 ++ + QE K LG+D FLKLL+TQ+K+QDP EP + +AQ+A FS +E Sbjct: 6 NVSDAGSTQSQEAVSRTVKNVLGKDDFLKLLLTQLKYQDPLEPTDNKDFIAQMAQFSALE 65 Query: 62 QSVQMNSTLQELLKSN-------NLAQASSYIGKNIT----NADGSISGVVNAIQVSSTG 110 Q M+ +L++ ++QA IGK + + + ++G V A+++ G Sbjct: 66 QMTNMSDGFTKLVQMQETLFRESTVSQAVGLIGKKVEATLPDQNEPLTGFVTAMKIV-DG 124 Query: 111 LTAITVDNTEIPITTGIRI 129 + V+ EI + + Sbjct: 125 EPRVVVNGKEIGLGYISMV 143 >gi|297544703|ref|YP_003677005.1| flagellar hook capping protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842478|gb|ADH60994.1| flagellar hook capping protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 131 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 43/137 (31%), Positives = 73/137 (53%), Gaps = 14/137 (10%) Query: 1 MEINTEVNPTQ-QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59 ME+NT + + S++ S LG+D FL+LL+ Q+++QDP +PM E +AQLA FS Sbjct: 1 MEVNTNYSFSNVYNTSETTSNDQLGKDDFLQLLVVQLENQDPLDPMDDKELIAQLAQFSI 60 Query: 60 MEQSVQMNSTLQELLKSNNLAQASSYIGKNI----TNADGSISGVVNAIQ--VSSTGLTA 113 +EQ +N + N +A + IGKN+ T+ +G+ + VV + G Sbjct: 61 LEQMQNLNVSF-------NAVRAINLIGKNVYATITDDNGNSTSVVGNVDAVYKQNGEYY 113 Query: 114 ITVDNTEIPITTGIRIS 130 + V+ ++P+ +S Sbjct: 114 LEVNGIDVPLDAVTAVS 130 >gi|295399816|ref|ZP_06809797.1| flagellar hook capping protein [Geobacillus thermoglucosidasius C56-YS93] gi|312111672|ref|YP_003989988.1| flagellar hook capping protein [Geobacillus sp. Y4.1MC1] gi|294978219|gb|EFG53816.1| flagellar hook capping protein [Geobacillus thermoglucosidasius C56-YS93] gi|311216773|gb|ADP75377.1| flagellar hook capping protein [Geobacillus sp. Y4.1MC1] Length = 140 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 69/121 (57%), Gaps = 5/121 (4%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75 + + LG+D FLK+L+ Q+++QDP PM+ E +AQ+A FS +EQ + ++S + L++ Sbjct: 19 RKTGNQILGKDDFLKILLVQLQNQDPLNPMEDKEFIAQMANFSTLEQMINISSMFERLMQ 78 Query: 76 SNN---LAQASSYIGKNI--TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 + N L + S +IGKN+ + + SGVV ++ + + + I + I++ Sbjct: 79 TQNNQALLRYSEWIGKNVYWQEEENTKSGVVKSVLQKDNQIFLELDNGSTINASLVIKVE 138 Query: 131 N 131 + Sbjct: 139 S 139 >gi|312792654|ref|YP_004025577.1| flagellar hook capping protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179794|gb|ADQ39964.1| flagellar hook capping protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 164 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 42/123 (34%), Positives = 66/123 (53%), Gaps = 13/123 (10%) Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 Q + S +K LG+ FL LL+TQ+++QDP +PM+ E VAQLA FS +EQ +N + + Sbjct: 17 QGLATSSTKNVLGKQEFLNLLVTQLRYQDPLKPMEDKEFVAQLAQFSALEQMQNLNESFE 76 Query: 72 ELLKSNNLAQASSYIGKNIT-----NADGSISGVVNAIQVSSTGLTAITVDNTEIPITTG 126 L +A S IG+ + ++ I G V +++V + + V+NTEI Sbjct: 77 -------LLKAQSMIGRYVVATNPQDSSKQIEGRVESVKVDGS-KVYLKVNNTEISSENV 128 Query: 127 IRI 129 I Sbjct: 129 KEI 131 >gi|163939558|ref|YP_001644442.1| flagellar basal body rod modification protein [Bacillus weihenstephanensis KBAB4] gi|163861755|gb|ABY42814.1| flagellar hook capping protein [Bacillus weihenstephanensis KBAB4] Length = 192 Score = 101 bits (253), Expect = 2e-20, Method: Composition-based stats. Identities = 37/139 (26%), Positives = 65/139 (46%), Gaps = 10/139 (7%) Query: 3 INTEVNPTQQEF----SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58 +N +P QQ S K+ +G+D FLKL ++ +HQDP M ++ + Q A S Sbjct: 27 VNGVQSPVQQTNGVSESAQKTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQLS 86 Query: 59 QMEQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADG---SISGVVNAIQVSSTGLT 112 MEQ M + L + S L ++GK + DG ++G V ++++ Sbjct: 87 LMEQVQNMTKAVDSLRTTMYSTALDGGMKFLGKYVRGIDGDGKKVTGQVETVRLAENNDV 146 Query: 113 AITVDNTEIPITTGIRISN 131 + +DN + + R+S+ Sbjct: 147 QLVIDNKIVSLRFVERVSD 165 >gi|52080230|ref|YP_079021.1| flagellar basal body rod modification protein [Bacillus licheniformis ATCC 14580] gi|52785607|ref|YP_091436.1| flagellar basal body rod modification protein [Bacillus licheniformis ATCC 14580] gi|319645991|ref|ZP_08000221.1| YlxG protein [Bacillus sp. BT1B_CT2] gi|52003441|gb|AAU23383.1| Flagellar hook capping protein [Bacillus licheniformis ATCC 14580] gi|52348109|gb|AAU40743.1| YlxG [Bacillus licheniformis ATCC 14580] gi|317391741|gb|EFV72538.1| YlxG protein [Bacillus sp. BT1B_CT2] Length = 155 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 37/124 (29%), Positives = 65/124 (52%), Gaps = 4/124 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 ++ K+ S LG+D FLKLL+ Q+++QDP PM+ E +AQ+A FS +EQ +N+T+ Sbjct: 28 AKKAEKAGSGSNLGKDEFLKLLMKQLQYQDPLNPMEDREFIAQMATFSSLEQLTNLNTTM 87 Query: 71 QELLKSNN-LAQASSYIGKNITNADGSI---SGVVNAIQVSSTGLTAITVDNTEIPITTG 126 + + + S+IGK +T + +V +++ S + D TE+ Sbjct: 88 STFVGLQDPMTMYVSWIGKEVTYEGEDSEEKTALVKSVKSSDGQYLLVLDDGTEVNPWNV 147 Query: 127 IRIS 130 +S Sbjct: 148 TAVS 151 >gi|239826620|ref|YP_002949244.1| flagellar basal body rod modification protein [Geobacillus sp. WCH70] gi|239806913|gb|ACS23978.1| flagellar hook capping protein [Geobacillus sp. WCH70] Length = 140 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 69/121 (57%), Gaps = 5/121 (4%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75 + + LG+D FLK+L+ Q+++QDP PM+ E +AQ+A FS +EQ + ++S +++ +K Sbjct: 19 RKTGNQILGKDDFLKILLVQLQNQDPLNPMEDKEFIAQMASFSSLEQMINISSMIEQFIK 78 Query: 76 SN---NLAQASSYIGKNI--TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 + L + S +IGKN+ + + SG+V ++ + + T I + +++ Sbjct: 79 TQHDHALLRYSEWIGKNVYWQEDENTKSGIVQSVSQKDQQIFLELDNGTTIKASLVVKVE 138 Query: 131 N 131 + Sbjct: 139 S 139 >gi|78356755|ref|YP_388204.1| basal-body rod modification protein FlgD [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219160|gb|ABB38509.1| basal-body rod modification protein FlgD [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 263 Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats. Identities = 38/104 (36%), Positives = 57/104 (54%), Gaps = 7/104 (6%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69 T ++K K LG++ FL LL+TQ+ HQDP PM E VAQLA FS +EQ ++ Sbjct: 16 TNDPYAKRKG-ADLGKEDFLTLLVTQLSHQDPLNPMDDKEFVAQLAQFSSLEQLTNISGG 74 Query: 70 LQELLKSNNLAQ---ASSYIGKNITNADGSIS---GVVNAIQVS 107 + L ++N Q A +IGK + A S+S G +++ + Sbjct: 75 IDNLNDASNQGQMISAVGFIGKEVRAAGNSLSLEDGKASSVYFA 118 >gi|296330842|ref|ZP_06873317.1| flagellar basal body rod modification protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674360|ref|YP_003866032.1| flagellar basal body rod modification protein [Bacillus subtilis subsp. spizizenii str. W23] gi|296151847|gb|EFG92721.1| flagellar basal body rod modification protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412604|gb|ADM37723.1| flagellar basal body rod modification protein [Bacillus subtilis subsp. spizizenii str. W23] Length = 140 Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats. Identities = 38/124 (30%), Positives = 72/124 (58%), Gaps = 5/124 (4%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 I++E ++ + + S +LG+D FLK+L+TQ+++QDP P+ E ++Q+A FS +EQ Sbjct: 4 ISSEYKLPEKTSTVTTSNSSLGKDEFLKILMTQVQNQDPLNPVDDKEFISQMATFSSLEQ 63 Query: 63 SVQMNSTLQELLKSNN-LAQASSYIGKNITNADGSI----SGVVNAIQVSSTGLTAITVD 117 + MN T+ + +++ + ++GK ++ DG +G V++++ S I D Sbjct: 64 MMNMNKTMTQFVENQDPFTSYVDWLGKEVSWTDGQSTTDKTGTVSSVKHSKGSYYLILDD 123 Query: 118 NTEI 121 TEI Sbjct: 124 GTEI 127 >gi|303240281|ref|ZP_07326800.1| flagellar hook capping protein [Acetivibrio cellulolyticus CD2] gi|302592191|gb|EFL61920.1| flagellar hook capping protein [Acetivibrio cellulolyticus CD2] Length = 297 Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats. Identities = 36/133 (27%), Positives = 69/133 (51%), Gaps = 16/133 (12%) Query: 7 VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66 ++ T + ++ LG+D F+ LL+TQ+++QDP P ++ +AQ+A FS +EQ + Sbjct: 16 IDDTSATKASERNTGELGKDEFINLLVTQLQYQDPLNPQDDTQFIAQMAQFSALEQMQNL 75 Query: 67 NSTLQELLKSNNLAQASSYIGKNIT--------NADGSISGVVNAIQVSSTGLTAITVDN 118 N+ S + QA IGK +T + +I+G V ++++ S G + V+ Sbjct: 76 NT-------SYSATQAFGMIGKTVTANLKDGDSSKTNTITGEVTSVKMQS-GKAYVIVNG 127 Query: 119 TEIPITTGIRISN 131 +IP+ + + Sbjct: 128 NDIPVENVQEVKD 140 >gi|183220586|ref|YP_001838582.1| basal-body rod modification protein FlgD [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910694|ref|YP_001962249.1| endoflagellar hook capping protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775370|gb|ABZ93671.1| Endoflagellar hook capping protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779008|gb|ABZ97306.1| Basal-body rod modification protein FlgD [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 194 Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 67/118 (56%), Gaps = 8/118 (6%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77 + +K LG+D FLKLL+TQ+ HQDPT P++ + +AQ+A FS +EQ ++S + + Sbjct: 49 EKQKELGKDDFLKLLLTQLSHQDPTNPVQDKDFIAQMAQFSSLEQMKNISSGIARM---- 104 Query: 78 NLAQASSYIGKNITNAD----GSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 Q+ S +GK ++ D ++G+ AI + G T + V+ + ++ IS+ Sbjct: 105 ESKQSYSVVGKIVSGPDLVTGEDVTGLAGAILFDNEGKTYVRVNGRMLDVSKINLISD 162 >gi|317129202|ref|YP_004095484.1| flagellar hook capping protein [Bacillus cellulosilyticus DSM 2522] gi|315474150|gb|ADU30753.1| flagellar hook capping protein [Bacillus cellulosilyticus DSM 2522] Length = 149 Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats. Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 13/133 (9%) Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 Q+ K+++ L +DAFL++LITQ+++QDP PM+ E +AQ+A F+ +EQ MN+ LQ Sbjct: 15 QKQQKARNTGDLDKDAFLRILITQLQNQDPLNPMEDKEFIAQMAQFTSLEQMTNMNTNLQ 74 Query: 72 ELLKS--NNLAQASSYIGKNI------TNADGS-----ISGVVNAIQVSSTGLTAITVDN 118 + L S N S IGK + N DGS + GVV +++ + + + D Sbjct: 75 KFLDSHQNQFVSHSELIGKEVQWERERVNEDGSKRMEVVEGVVTSVKFQNGSASLVIDDQ 134 Query: 119 TEIPITTGIRISN 131 + I + Sbjct: 135 HTVSTKDIQVIKS 147 >gi|269792938|ref|YP_003317842.1| flagellar hook capping protein [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100573|gb|ACZ19560.1| flagellar hook capping protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 134 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 40/133 (30%), Positives = 70/133 (52%), Gaps = 5/133 (3%) Query: 2 EINTEVNPTQQEFSKSKS-KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 E+N +++ KK LG+D FLK+LI Q+ HQDP +P+K + +AQ+A FS + Sbjct: 3 EVNGVTQAASGGQEATRAVKKELGKDDFLKILIAQLTHQDPLDPLKDRDFIAQMAQFSAL 62 Query: 61 EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADG---SISGVVNAIQVSSTGLTAITVD 117 EQ + + ++ L K + +A A +Y+G+ + D +GVV +++ +T D Sbjct: 63 EQQMNIAKGIEGLSKLS-MASAVNYVGRTVGYTDDQGQEAAGVVKFVEMKDGSVTLHLAD 121 Query: 118 NTEIPITTGIRIS 130 IP+ + Sbjct: 122 GNSIPMEKVQYVG 134 >gi|27381964|ref|NP_773493.1| flagellar basal body rod modification protein [Bradyrhizobium japonicum USDA 110] gi|27355134|dbj|BAC52118.1| hook formation protein [Bradyrhizobium japonicum USDA 110] Length = 140 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 41/111 (36%), Positives = 68/111 (61%), Gaps = 3/111 (2%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82 + + FL+LL+ ++K+QDPT PM S+ ++Q A S +EQ++Q N+ L LL S +L+QA Sbjct: 28 VDYNTFLQLLVAEMKNQDPTNPMDTSQYMSQFAQLSTVEQAMQTNTKLDALLSSQSLSQA 87 Query: 83 SSYIGKNITNAD---GSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 IGK ++ D + SG V +I ++S G A + T++ + G+ IS Sbjct: 88 DGLIGKTVSFTDATGATFSGKVKSISINSDGSVATLENGTKVAVGPGLTIS 138 >gi|254503888|ref|ZP_05116039.1| flagellar hook capping protein [Labrenzia alexandrii DFL-11] gi|222439959|gb|EEE46638.1| flagellar hook capping protein [Labrenzia alexandrii DFL-11] Length = 134 Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats. Identities = 44/109 (40%), Positives = 75/109 (68%), Gaps = 1/109 (0%) Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ 81 T+ +AFL+L++TQ+K+QDPT+PM ASEQ++QLA FSQ+EQ++Q NS L+ +L + + Q Sbjct: 27 TVDYNAFLQLMMTQMKNQDPTKPMDASEQLSQLATFSQVEQAIQTNSKLETMLTNMSFGQ 86 Query: 82 ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 IG+ +T+++G+ +GVV +++ S G + + + G+ IS Sbjct: 87 VDDLIGRTVTDSNGT-TGVVEKVEIYSDGTILGLDNGKGVLLGPGVSIS 134 >gi|115523198|ref|YP_780109.1| flagellar basal body rod modification protein [Rhodopseudomonas palustris BisA53] gi|115517145|gb|ABJ05129.1| flagellar hook capping protein [Rhodopseudomonas palustris BisA53] Length = 135 Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats. Identities = 41/129 (31%), Positives = 70/129 (54%), Gaps = 3/129 (2%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 N ++ S S S T+G + FL+LLI Q+K+QDP+ P ++ ++Q A S +EQ++ Sbjct: 7 GAANSSKSSSSSSSSSATVGYNEFLQLLIAQMKNQDPSNPTDMAQYMSQFAQLSSVEQAI 66 Query: 65 QMNSTLQELLKSNNLAQASSYIGKNITNADG---SISGVVNAIQVSSTGLTAITVDNTEI 121 Q N+ L LL ++ L+QA IG+ + D S +G + ++ + G A ++ Sbjct: 67 QTNAKLDTLLSTSALSQAEGLIGRTASFTDEAGHSATGKIASVSIIQGGAVATLDTGVQV 126 Query: 122 PITTGIRIS 130 + GI IS Sbjct: 127 LLGPGITIS 135 >gi|302872564|ref|YP_003841200.1| flagellar hook capping protein [Caldicellulosiruptor obsidiansis OB47] gi|302575423|gb|ADL43214.1| flagellar hook capping protein [Caldicellulosiruptor obsidiansis OB47] Length = 171 Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats. Identities = 43/124 (34%), Positives = 67/124 (54%), Gaps = 13/124 (10%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 +Q + S K LG+ FL LL+TQ+++QDP +PM+ E VAQLA FS +EQ +N + Sbjct: 17 KQGLAVSSEKNILGKQEFLNLLVTQLRYQDPLKPMEDKEFVAQLAQFSALEQMQNLNQSF 76 Query: 71 QELLKSNNLAQASSYIGKNI---TNADG--SISGVVNAIQVSSTGLTAITVDNTEIPITT 125 + L +A S IG+ I + DG I G V++I+V + + V+ TE+ Sbjct: 77 E-------LLKAQSMIGRYIVATSTQDGLKQIEGRVDSIRVDGS-KVFLKVNGTEVLSDN 128 Query: 126 GIRI 129 + Sbjct: 129 IKEV 132 >gi|254473493|ref|ZP_05086890.1| flagellar hook capping protein [Pseudovibrio sp. JE062] gi|211957609|gb|EEA92812.1| flagellar hook capping protein [Pseudovibrio sp. JE062] Length = 152 Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats. Identities = 43/131 (32%), Positives = 74/131 (56%), Gaps = 4/131 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 N + + + L +AFL L + +K QDPT+P+ +E + QLA FS +EQS Sbjct: 10 NGASSNEPVFKPQGSEQAYLDYNAFLMLFMESLKSQDPTDPLDTAEYMGQLAQFSAVEQS 69 Query: 64 VQMNSTLQELLKSNNLAQASSYIGKNIT--NADG--SISGVVNAIQVSSTGLTAITVDNT 119 + N+ L +L+ +++ QA++ IG + NADG + +GV+ ++Q+ + G A D T Sbjct: 70 TKTNTHLTAMLQQHSINQANNLIGATVEVPNADGTETTTGVIKSVQILTDGSIATLEDGT 129 Query: 120 EIPITTGIRIS 130 ++ + GI IS Sbjct: 130 KVALVPGIEIS 140 >gi|169831905|ref|YP_001717887.1| flagellar hook capping protein [Candidatus Desulforudis audaxviator MP104C] gi|169638749|gb|ACA60255.1| flagellar hook capping protein [Candidatus Desulforudis audaxviator MP104C] Length = 134 Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 59/129 (45%), Gaps = 3/129 (2%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 + +E + S QD FLKLL+ Q+K+ P P + + Q A F +E+ Sbjct: 6 VGSEYALPGKTTPPRPSSGLFDQDTFLKLLVAQLKNPSPFSPPDTDKMMEQAAQFGMLER 65 Query: 63 SVQMNSTLQELLKSNNLAQASSYIGKNIT--NADGSISGVVNAIQVSSTGLTAITVDNTE 120 V++ L+E+ ++ LAQA+ +G+ + D ISG V + ++ G + + Sbjct: 66 LVKVEEALREMSRAAYLAQAAEIVGREVVVLAGDRQISGTVERVLLNERG-ARVVLGAES 124 Query: 121 IPITTGIRI 129 I + + Sbjct: 125 YDINRVVEV 133 >gi|158422276|ref|YP_001523568.1| flagellar basal body rod modification protein [Azorhizobium caulinodans ORS 571] gi|158329165|dbj|BAF86650.1| flagellar hook assembly scaffolding protein [Azorhizobium caulinodans ORS 571] Length = 138 Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats. Identities = 42/109 (38%), Positives = 71/109 (65%), Gaps = 1/109 (0%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82 + + FL+LL+ Q+K+QDPT+PM ++ ++QLA FSQ+EQ N L LL ++ L A Sbjct: 29 VDYNQFLQLLVAQLKNQDPTQPMDSTAYLSQLASFSQVEQQTNTNKKLDTLLSASALQSA 88 Query: 83 SSYIGKNITNADGSISGVVNAIQVSSTGLTAITV-DNTEIPITTGIRIS 130 + IGK +T+ADG++SG V ++ + S G T+ D +++ + + + IS Sbjct: 89 DAAIGKTVTSADGTVSGTVASVSLVSGGAPIATLKDGSKVTLDSSVSIS 137 >gi|83589629|ref|YP_429638.1| flagellar hook capping protein [Moorella thermoacetica ATCC 39073] gi|83572543|gb|ABC19095.1| Flagellar hook capping protein [Moorella thermoacetica ATCC 39073] Length = 140 Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 36/114 (31%), Positives = 62/114 (54%), Gaps = 7/114 (6%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78 K LG+D FLKLL Q+++QDP P+ ++ +AQ+A FS +EQ + + E L Sbjct: 19 PNKGLGKDDFLKLLAAQLQNQDPLNPVSNTDFIAQMAQFSVLEQMNNLYESFNEAL---- 74 Query: 79 LAQASSYIGKNITN--ADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 + QA IGK +T D +++G V+ + S G+ +TV ++ + ++ Sbjct: 75 MLQAVGLIGKEVTARINDQTLTGTVSKVNWSPEGII-LTVGEQQVSLKDVQEVA 127 >gi|218662878|ref|ZP_03518808.1| flagellar basal body rod modification protein [Rhizobium etli IE4771] Length = 146 Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats. Identities = 57/114 (50%), Positives = 84/114 (73%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77 + K TL D FL+LLI Q+K+QDPT+PM ASEQ++QLA FSQ+EQ++Q N+ L LL S+ Sbjct: 21 QKKATLNYDNFLQLLIAQMKNQDPTDPMDASEQMSQLASFSQVEQTIQTNTKLDTLLSSS 80 Query: 78 NLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 +L QASSY+GK + +ADG++ G V +++V S G+ A T D +I + GI +++ Sbjct: 81 SLTQASSYVGKYMESADGTVKGTVESVKVYSDGIIATTTDGGKILVQAGITVAD 134 >gi|229029433|ref|ZP_04185516.1| Flagellar hook assembly protein [Bacillus cereus AH1271] gi|228731892|gb|EEL82791.1| Flagellar hook assembly protein [Bacillus cereus AH1271] Length = 192 Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 6/125 (4%) Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72 + K+ +G+D FLKL + +HQDP M ++ + Q A S MEQ M + Sbjct: 41 SAGEQKTPGVMGKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDS 100 Query: 73 L---LKSNNLAQASSYIGKNITNADG---SISGVVNAIQVSSTGLTAITVDNTEIPITTG 126 L + S L ++GK + DG ++G V ++++ + +DN + + Sbjct: 101 LKSTMYSTALDGGMKFLGKYVRGVDGDGKKVTGQVETVRLAENNEVQLVIDNKVVSLRFV 160 Query: 127 IRISN 131 R+S+ Sbjct: 161 ERVSD 165 >gi|126653742|ref|ZP_01725660.1| flagellar basal body rod modification protein D [Bacillus sp. B14905] gi|126589706|gb|EAZ83842.1| flagellar basal body rod modification protein D [Bacillus sp. B14905] Length = 229 Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats. Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 16/131 (12%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74 +K LG+DAFL+LLITQ++HQDPT PM E ++Q+A FS +EQ M ++ LL Sbjct: 27 TKQTGNSELGKDAFLQLLITQLQHQDPTNPMNDREFISQMAQFSSLEQMQNMTKAVESLL 86 Query: 75 KSNNLAQASSY---IGKNITNAD-------------GSISGVVNAIQVSSTGLTAITVDN 118 S Q +Y +GK + + SGV+ +++ + D Sbjct: 87 ASQQQTQMMNYATFVGKEVKWHEITDKTDEKGDPVVNEGSGVIESLKFVDGSVVFKLADG 146 Query: 119 TEIPITTGIRI 129 EI I Sbjct: 147 KEITPGNISGI 157 >gi|328545486|ref|YP_004305595.1| flagellar hook capping protein [polymorphum gilvum SL003B-26A1] gi|326415227|gb|ADZ72290.1| Flagellar hook capping protein [Polymorphum gilvum SL003B-26A1] Length = 131 Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats. Identities = 42/109 (38%), Positives = 74/109 (67%), Gaps = 1/109 (0%) Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ 81 TL +AFL+L++ Q+K+QDPT+P+ +++Q+AQLA FSQ+EQ+++ N+ L+ +L + + Q Sbjct: 24 TLDYNAFLQLMLAQMKNQDPTDPVDSTQQLAQLATFSQVEQAMKTNTKLEAMLTNMSFGQ 83 Query: 82 ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 IG+ T+A G+ +GVV +++V S G + I + G++IS Sbjct: 84 VDDLIGRTATDAIGT-TGVVTSVEVYSDGTLLGLDNGKGILLGPGVKIS 131 >gi|225620906|ref|YP_002722164.1| flagellar hook capping protein [Brachyspira hyodysenteriae WA1] gi|225215726|gb|ACN84460.1| flagellar hook capping protein [Brachyspira hyodysenteriae WA1] Length = 264 Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats. Identities = 40/119 (33%), Positives = 61/119 (51%), Gaps = 4/119 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 Q F + ++ +LG+DAFLKLL Q+ HQDP PM + +AQLA FS +EQ ++N L Sbjct: 27 QHNFQRDPTQNSLGKDAFLKLLTVQMSHQDPLSPMDNRDMIAQLAQFSSVEQMTEVNKNL 86 Query: 71 QELLKSNNLAQASSYIGKNIT---NADGSISGVVNAIQVSSTGLT-AITVDNTEIPITT 125 + + S +GK++ A G V + + TG+ A+ DN I + Sbjct: 87 DSMKTFYSSQTGYSMLGKSVEVMDEAGNRFLGPVEMVMENDTGVALAVRTDNGLITVRP 145 >gi|47566135|ref|ZP_00237173.1| Basal-body rod modification protein flgD [Bacillus cereus G9241] gi|47557052|gb|EAL15382.1| Basal-body rod modification protein flgD [Bacillus cereus G9241] Length = 192 Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 59/125 (47%), Gaps = 6/125 (4%) Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72 + K+ +G+D FLKL + +HQDP M ++ + Q A S MEQ M + Sbjct: 41 SAGEQKTPGVMGKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDS 100 Query: 73 L---LKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTG 126 L + S + ++GK + DG+ ++G V ++++ + +DN + + Sbjct: 101 LKTTMYSTAIDGGMKFLGKYVRGVDGNGKKVTGQVETVRLAENNEVQLVIDNKVVSLRFV 160 Query: 127 IRISN 131 R+S+ Sbjct: 161 ERVSD 165 >gi|116328902|ref|YP_798622.1| endoflagellar hook capping protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330491|ref|YP_800209.1| endoflagellar hook capping protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116121646|gb|ABJ79689.1| Endoflagellar hook capping protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124180|gb|ABJ75451.1| Endoflagellar hook capping protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 271 Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats. Identities = 39/115 (33%), Positives = 66/115 (57%), Gaps = 8/115 (6%) Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA 80 K+LG+D FLKLLITQ+ QDPT P+K + +AQ+A FS +EQ +++ +Q++ Sbjct: 50 KSLGKDDFLKLLITQLSSQDPTNPVKDQDFIAQMAQFSSLEQMNNISTGIQKM----GNR 105 Query: 81 QASSYIGKNITNAD----GSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 Q+ S +GK ++ D +++G+ A+ G T + V+ I + IS+ Sbjct: 106 QSFSLVGKLVSGPDFVTGENVAGIAGALFFDGEGKTFVRVNGRSIDVEQISLISD 160 >gi|312135847|ref|YP_004003185.1| flagellar hook capping protein [Caldicellulosiruptor owensensis OL] gi|311775898|gb|ADQ05385.1| flagellar hook capping protein [Caldicellulosiruptor owensensis OL] Length = 170 Score = 100 bits (249), Expect = 6e-20, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 64/118 (54%), Gaps = 13/118 (11%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 S +K LG+ FL LL+TQ+++QDP +PM+ E VAQLA FS +EQ +N++ + Sbjct: 22 SANKNILGKQEFLNLLVTQLRYQDPLKPMEDKEFVAQLAQFSALEQMQNLNNSFE----- 76 Query: 77 NNLAQASSYIGKNITNADG-----SISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129 +A S IG+ + + I G V++I+V + + V++TE+ + Sbjct: 77 --FLKAQSMIGRYVIATNAQDGARQIEGRVDSIRVDGS-KVFLKVNDTEVLSDNVKEV 131 >gi|219670135|ref|YP_002460570.1| flagellar hook capping protein [Desulfitobacterium hafniense DCB-2] gi|219540395|gb|ACL22134.1| flagellar hook capping protein [Desulfitobacterium hafniense DCB-2] Length = 184 Score = 100 bits (249), Expect = 6e-20, Method: Composition-based stats. Identities = 33/114 (28%), Positives = 64/114 (56%), Gaps = 11/114 (9%) Query: 14 FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE- 72 +K+ LG+D FLKLL+ ++ +QDP PM + + Q+A FS +EQ M+ +++ Sbjct: 23 AVSDATKEVLGKDDFLKLLVAELTNQDPLSPMDNKDMITQMAQFSSLEQMNNMSKSMENL 82 Query: 73 ------LLKSNNLAQASSYIGKNITNAD----GSISGVVNAIQVSSTGLTAITV 116 L +++ L+Q ++ IGK++ A+ G ++G+V ++Q + + V Sbjct: 83 VGAFGALFQNSLLSQGAALIGKHVEGANIDGSGFVNGIVESVQWLNGNPQLVLV 136 >gi|224534247|ref|ZP_03674825.1| flagellar hook capping protein [Borrelia spielmanii A14S] gi|224514349|gb|EEF84665.1| flagellar hook capping protein [Borrelia spielmanii A14S] Length = 147 Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats. Identities = 38/116 (32%), Positives = 62/116 (53%), Gaps = 5/116 (4%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77 +K LG+D FLKLLITQ+++QDPT PMK E +AQ+A FS +EQ M+ + ++L S Sbjct: 31 SNKVNLGKDDFLKLLITQLRYQDPTNPMKDKEFIAQMAQFSALEQMANMSKSFEKLSSSL 90 Query: 78 NLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 + + +GK I G + G V +I+ + + + V+ + + Sbjct: 91 EIRKDLDLLGKVIKFQHGDGEIVKGRVTSIK--TGAMPQVMVNGNYYVYKNILSVG 144 >gi|312115275|ref|YP_004012871.1| flagellar hook capping protein [Rhodomicrobium vannielii ATCC 17100] gi|311220404|gb|ADP71772.1| flagellar hook capping protein [Rhodomicrobium vannielii ATCC 17100] Length = 100 Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats. Identities = 42/100 (42%), Positives = 68/100 (68%) Query: 31 LLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNI 90 +L+ Q+++QDPT+P ++ ++QLA FS +EQ V NS L LL ++Q +S IGK + Sbjct: 1 MLVAQLQNQDPTDPTDPTQFISQLASFSSVEQLVNANSRLDTLLTQTAISQGASLIGKTV 60 Query: 91 TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 T+ADG+ISG + +I++SS+G A D + I + +G+ IS Sbjct: 61 TSADGTISGTIASIEISSSGSVATLADGSTIELASGVVIS 100 >gi|216263922|ref|ZP_03435916.1| flagellar hook capping protein [Borrelia afzelii ACA-1] gi|215979966|gb|EEC20788.1| flagellar hook capping protein [Borrelia afzelii ACA-1] Length = 147 Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats. Identities = 39/116 (33%), Positives = 63/116 (54%), Gaps = 5/116 (4%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77 +K LG+D FLKLLITQ+++QDPT PMK E +AQ+A FS +EQ M+ + ++L S Sbjct: 31 SNKVNLGKDDFLKLLITQLRYQDPTNPMKDKEFIAQMAQFSALEQMANMSKSFEKLSSSL 90 Query: 78 NLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 + + +GK I G+ + G V +I+ + + I V+ + + Sbjct: 91 EIRKDLDLLGKVIKFQHGNGEIVEGRVTSIK--TGAIPQIMVNGNYYVYKNILSVG 144 >gi|119953083|ref|YP_945292.1| flagellar basal body rod modification protein [Borrelia turicatae 91E135] gi|119861854|gb|AAX17622.1| basal-body rod modification protein FlgD [Borrelia turicatae 91E135] Length = 144 Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats. Identities = 39/124 (31%), Positives = 62/124 (50%), Gaps = 5/124 (4%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69 + + + LG+D FLKLLITQ+K+QDPT+PMK E +AQ+A FS +EQ M+ + Sbjct: 20 SNSKVQRGVKGNNLGRDDFLKLLITQLKYQDPTDPMKDKEFIAQMAQFSALEQMTNMSKS 79 Query: 70 LQELLKSNNLAQASSYIGKNITNA--DGS-ISGVVNAIQVSSTGLTAITVDNTEIPITTG 126 + L + + +GK + DG I G V I+ + + I +D Sbjct: 80 FESLSSVLGINKDLDLLGKIVEFEHVDGEIIKGKVTNIK--TGIVPQIMIDGKYYVYNNI 137 Query: 127 IRIS 130 + + Sbjct: 138 LSVG 141 >gi|311068149|ref|YP_003973072.1| flagellar basal body rod modification protein [Bacillus atrophaeus 1942] gi|310868666|gb|ADP32141.1| flagellar basal body rod modification protein [Bacillus atrophaeus 1942] Length = 142 Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats. Identities = 31/113 (27%), Positives = 63/113 (55%), Gaps = 5/113 (4%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN-LAQ 81 LG+D FLK+L+ Q+++QDP P+ E ++Q+A FS +EQ + +N+T+ + + + Sbjct: 26 LGKDEFLKILMKQVQNQDPLNPVDDKEFISQMATFSSLEQMMNLNTTMTKFVDYQDPFTT 85 Query: 82 ASSYIGKNITNADG----SISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 ++IGK+++ ++G +G V++++ S + D EI + Sbjct: 86 YVNWIGKDVSWSEGQDGKEQTGKVSSVKHSKGEYFLVLEDGKEISPWNVTSVG 138 >gi|111115109|ref|YP_709727.1| flagellar basal body rod modification protein [Borrelia afzelii PKo] gi|110890383|gb|ABH01551.1| flagellar hook assembly protein [Borrelia afzelii PKo] Length = 147 Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats. Identities = 39/116 (33%), Positives = 62/116 (53%), Gaps = 5/116 (4%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77 +K LG+D FLKLLITQ+++QDPT PMK E +AQ+A FS +EQ M+ + ++L S Sbjct: 31 SNKVNLGKDDFLKLLITQLRYQDPTNPMKDKEFIAQMAQFSALEQMANMSKSFEKLSSSL 90 Query: 78 NLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 + + +GK I G + G V +I+ + + I V+ + + Sbjct: 91 EIRKDLDLLGKVIKFQHGDGEIVEGRVTSIK--TGAIPQIMVNGNYYVYKNILSVG 144 >gi|56419761|ref|YP_147079.1| flagellar basal body rod modification protein [Geobacillus kaustophilus HTA426] gi|297530599|ref|YP_003671874.1| flagellar hook capping protein [Geobacillus sp. C56-T3] gi|56379603|dbj|BAD75511.1| flagellar hook capping protein [Geobacillus kaustophilus HTA426] gi|297253851|gb|ADI27297.1| flagellar hook capping protein [Geobacillus sp. C56-T3] Length = 142 Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 68/120 (56%), Gaps = 5/120 (4%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75 + + LG+D FLK+L+ Q+++QDP PM+ + +AQ+A FS +EQ + + + +Q+ ++ Sbjct: 20 RKTGNQILGKDDFLKILLAQLENQDPLNPMEDKDFIAQMASFSSLEQMMNIANLMQQWMQ 79 Query: 76 SNN---LAQASSYIGKNITNADGS--ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 +++ L + S +IGK + DG +S VV ++ +T + T I +++ Sbjct: 80 ASSRDALLRYSEWIGKTVHWQDGETMMSAVVQSVMQKDGQVTLGLDNGTTIAADAVVKVE 139 >gi|229058386|ref|ZP_04196770.1| Flagellar hook assembly protein [Bacillus cereus AH603] gi|229132565|ref|ZP_04261414.1| Flagellar hook assembly protein [Bacillus cereus BDRD-ST196] gi|229166593|ref|ZP_04294345.1| Flagellar hook assembly protein [Bacillus cereus AH621] gi|228616847|gb|EEK73920.1| Flagellar hook assembly protein [Bacillus cereus AH621] gi|228650911|gb|EEL06897.1| Flagellar hook assembly protein [Bacillus cereus BDRD-ST196] gi|228719895|gb|EEL71485.1| Flagellar hook assembly protein [Bacillus cereus AH603] Length = 192 Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats. Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 10/139 (7%) Query: 3 INTEVNPTQQEFSKSKSKKT----LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58 +N +P QQ S ++ +G+D FLKL ++ +HQDP M ++ + Q A S Sbjct: 27 VNGVQSPVQQTNGVSAGEQKTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQLS 86 Query: 59 QMEQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADG---SISGVVNAIQVSSTGLT 112 MEQ M + L + S L ++GK + DG ++G V ++++ Sbjct: 87 LMEQVQNMTKAVDSLRTTMYSTALDGGMKFLGKYVRGIDGDGKKVTGQVETVRLAENNDV 146 Query: 113 AITVDNTEIPITTGIRISN 131 + +DN + + R+S+ Sbjct: 147 QLVIDNKIVSLRFVERVSD 165 >gi|121533755|ref|ZP_01665582.1| flagellar hook capping protein [Thermosinus carboxydivorans Nor1] gi|121307746|gb|EAX48661.1| flagellar hook capping protein [Thermosinus carboxydivorans Nor1] Length = 136 Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats. Identities = 38/116 (32%), Positives = 62/116 (53%), Gaps = 11/116 (9%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77 K LG+D FLKLL+ Q+++QDP +PM+ E +AQ+A FS +EQ +NST+ + Sbjct: 22 KKNDQLGKDDFLKLLVAQLRYQDPMKPMEDKEFIAQMAQFSSLEQIQNLNSTMVTM---- 77 Query: 78 NLAQASSYIGKNITNADG---SISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 QA IGK + + +G V A+++S I V +T + ++ + Sbjct: 78 ---QAMGLIGKTVRWQNENGAEQAGNVRAVKISDR-QPYIVVGDTTVELSKIQVVE 129 >gi|299534780|ref|ZP_07048110.1| hypothetical protein BFZC1_02077 [Lysinibacillus fusiformis ZC1] gi|298729868|gb|EFI70413.1| hypothetical protein BFZC1_02077 [Lysinibacillus fusiformis ZC1] Length = 230 Score = 100 bits (248), Expect = 9e-20, Method: Composition-based stats. Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 16/134 (11%) Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 ++ +K LG+DAFLKLLITQ++HQDPT PM E ++Q+A FS +EQ M ++ Sbjct: 23 KKPTKQTGNSELGKDAFLKLLITQLQHQDPTNPMDDREFISQMAQFSSLEQMQNMTKAME 82 Query: 72 ---ELLKSNNLAQASSYIGKNITNAD-------------GSISGVVNAIQVSSTGLTAIT 115 + + + +++IGK + + GV+ +++ + Sbjct: 83 SLLSSQQQSQMMNYATFIGKEVKWHEITEEKDEKENPVVNEGIGVIESLKFVDGSVVFKL 142 Query: 116 VDNTEIPITTGIRI 129 D EI I Sbjct: 143 ADGKEISPGNISGI 156 >gi|46579855|ref|YP_010663.1| basal-body rod modification protein FlgD [Desulfovibrio vulgaris str. Hildenborough] gi|120602679|ref|YP_967079.1| flagellar hook capping protein [Desulfovibrio vulgaris DP4] gi|46449271|gb|AAS95922.1| basal-body rod modification protein FlgD [Desulfovibrio vulgaris str. Hildenborough] gi|120562908|gb|ABM28652.1| flagellar hook capping protein [Desulfovibrio vulgaris DP4] gi|311234144|gb|ADP86998.1| flagellar hook capping protein [Desulfovibrio vulgaris RCH1] Length = 265 Score = 100 bits (248), Expect = 9e-20, Method: Composition-based stats. Identities = 39/97 (40%), Positives = 57/97 (58%), Gaps = 3/97 (3%) Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---S 68 Q K LG+DAFL+LL+TQ+KHQDP PM E VAQLA F+ +EQ + +N + Sbjct: 17 QSAVKKSGNADLGKDAFLQLLVTQLKHQDPLNPMDDKEFVAQLAQFTSLEQLMGINTGVT 76 Query: 69 TLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQ 105 ++ E K + A SYIGK++ + IS + + + Sbjct: 77 SMNEAFKQQQMMNAVSYIGKDVLASGDQISKIKDGVS 113 >gi|229160716|ref|ZP_04288708.1| Flagellar hook assembly protein [Bacillus cereus R309803] gi|228622731|gb|EEK79565.1| Flagellar hook assembly protein [Bacillus cereus R309803] Length = 192 Score = 100 bits (248), Expect = 9e-20, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 63/139 (45%), Gaps = 10/139 (7%) Query: 3 INTEVNPTQQ----EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58 +N +P Q S+ K+ + +D FLKL + +HQDP M ++ + Q A S Sbjct: 27 VNGVQSPVGQTNGVSASEQKAPGVMEKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLS 86 Query: 59 QMEQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLT 112 MEQ M + L + S L ++GK + DG ++G V ++++ Sbjct: 87 LMEQVQNMTKAVDSLRTTMYSTALDGGMKFLGKYVRGVDGEGNKVTGQVETVRLAENNEV 146 Query: 113 AITVDNTEIPITTGIRISN 131 + +DN + + R+S+ Sbjct: 147 QLVIDNKVVSLRFVERVSD 165 >gi|157364670|ref|YP_001471437.1| flagellar hook capping protein [Thermotoga lettingae TMO] gi|157315274|gb|ABV34373.1| flagellar hook capping protein [Thermotoga lettingae TMO] Length = 219 Score = 100 bits (248), Expect = 9e-20, Method: Composition-based stats. Identities = 42/117 (35%), Positives = 60/117 (51%), Gaps = 6/117 (5%) Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65 + + + S+ TL +DAFL LLITQ+K+QDP EPM + +AQL FS +EQ Sbjct: 6 DYSYSTYTSSERTPSNTLDKDAFLLLLITQLKNQDPLEPMDNKDFIAQLTQFSTLEQITN 65 Query: 66 MNSTLQELLKSNN---LAQASSYIGKNITNADGSIS---GVVNAIQVSSTGLTAITV 116 M +++QE L AQ++S IGK T I+ GV +I + V Sbjct: 66 MTNSIQEFLTLQEGALQAQSASLIGKYATVQANQITVSDGVSESIVFELDEAAPVIV 122 >gi|194014528|ref|ZP_03053145.1| flagellar hook capping protein [Bacillus pumilus ATCC 7061] gi|194013554|gb|EDW23119.1| flagellar hook capping protein [Bacillus pumilus ATCC 7061] Length = 148 Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 43/137 (31%), Positives = 65/137 (47%), Gaps = 10/137 (7%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 N V T K TLG+D FLK+L+TQ+++QDPT P+ E V QLA FS +EQ Sbjct: 8 NRTVAQTDTSSKAEKKTDTLGKDQFLKILLTQLQNQDPTNPLDDREFVTQLATFSSLEQQ 67 Query: 64 VQMNSTLQELLKSNNLAQA--------SSYIGKNITN--ADGSISGVVNAIQVSSTGLTA 113 MN ++ +L + + A +IGK ++ D ISG V +++ + Sbjct: 68 TNMNDSITKLNQLMSTFVAHQDPFTTYVGWIGKEVSGKLDDKDISGTVKSVKNINNEYFL 127 Query: 114 ITVDNTEIPITTGIRIS 130 D T+I + Sbjct: 128 YLEDGTKISPWDVTAVG 144 >gi|225181605|ref|ZP_03735046.1| flagellar hook capping protein [Dethiobacter alkaliphilus AHT 1] gi|225167713|gb|EEG76523.1| flagellar hook capping protein [Dethiobacter alkaliphilus AHT 1] Length = 141 Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 36/126 (28%), Positives = 74/126 (58%), Gaps = 6/126 (4%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69 TQQ + + + + +D FL+LL+TQ+++QDP +P SE VAQ+A F+ +EQ +N+T Sbjct: 13 TQQSNKATGAMQEMDKDMFLQLLVTQLRYQDPLDPQDNSEFVAQMAQFTSLEQMQNLNNT 72 Query: 70 LQELLKSNNLA--QASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPIT 124 + +LL + A +++G ++T D + ++G+V+A++ G + +D + Sbjct: 73 MAKLLDIQSSLHNSAPAFLGLSVTVKDDNGLPLTGIVSAVE-YDNGKPRLVIDGNRYGLE 131 Query: 125 TGIRIS 130 + +++ Sbjct: 132 SVQKVT 137 >gi|42780845|ref|NP_978092.1| flagellar basal body rod modification protein [Bacillus cereus ATCC 10987] gi|42736765|gb|AAS40700.1| flagellar hook assembly protein family protein [Bacillus cereus ATCC 10987] Length = 192 Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 6/125 (4%) Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72 + K+ +G+D FLKL ++ +HQDP M ++ + Q A S MEQ M + Sbjct: 41 SAGEQKTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDS 100 Query: 73 L---LKSNNLAQASSYIGKNITNADG---SISGVVNAIQVSSTGLTAITVDNTEIPITTG 126 L + S L ++GK + DG ++G V ++++ + +DN + + Sbjct: 101 LRTTMYSTALDGGMKFLGKYVRGIDGDGKKVTGQVETVRLAENNDVQLVIDNKIVSLRFV 160 Query: 127 IRISN 131 R+S+ Sbjct: 161 ERVSD 165 >gi|323705439|ref|ZP_08117014.1| flagellar hook capping protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323535341|gb|EGB25117.1| flagellar hook capping protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 134 Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 71/134 (52%), Gaps = 14/134 (10%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 N+ +N + LG+D FL+LL+TQ+++QDP PM E +AQ+A FS +EQ Sbjct: 9 NSYMNTYTDGTKVTNPNSELGKDQFLQLLVTQLENQDPLNPMDDKEFIAQMAQFSALEQM 68 Query: 64 VQMNSTLQELLKSNNLAQASSYIGKNIT------NADGSISGVVNAIQVSSTGLTAITVD 117 +N + + +A S +GK +T + +++G V++++ + L + ++ Sbjct: 69 QNLNESF-------SAVKAYSLLGKTVTASVDSNGSSSTVTGKVDSVKFDGSNL-YLEIN 120 Query: 118 NTEIPITTGIRISN 131 +++ + + +S+ Sbjct: 121 GSDVSLDSVTSVSD 134 >gi|261419426|ref|YP_003253108.1| flagellar basal body rod modification protein [Geobacillus sp. Y412MC61] gi|319766241|ref|YP_004131742.1| flagellar hook capping protein [Geobacillus sp. Y412MC52] gi|261375883|gb|ACX78626.1| flagellar hook capping protein [Geobacillus sp. Y412MC61] gi|317111107|gb|ADU93599.1| flagellar hook capping protein [Geobacillus sp. Y412MC52] Length = 142 Score = 99.6 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 68/120 (56%), Gaps = 5/120 (4%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75 + + LG+D FLK+L+ Q+++QDP PM+ + +AQ+A FS +EQ + + + +Q+ ++ Sbjct: 20 RKTGNQILGKDDFLKILLAQLENQDPLNPMEDKDFIAQMANFSSLEQMMNIANLMQQWMQ 79 Query: 76 SNN---LAQASSYIGKNITNADGS--ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 +++ L + S +IGK + DG +S VV ++ +T + T I +++ Sbjct: 80 ASSRDALLRYSEWIGKTVHWQDGETMMSAVVQSVMQKDGQVTLGLDNGTTIAADAVVKVE 139 >gi|324325770|gb|ADY21030.1| flagellar basal body rod modification protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 192 Score = 99.6 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 6/125 (4%) Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---ST 69 + K+ +G+D FLKL + +HQDP M ++ + Q A S MEQ M Sbjct: 41 SAGEQKTPGVMGKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDK 100 Query: 70 LQELLKSNNLAQASSYIGKNITNADG---SISGVVNAIQVSSTGLTAITVDNTEIPITTG 126 LQ + S L ++GK + DG ++G V ++++ + +DN + + Sbjct: 101 LQSTMYSTALDGGMKFLGKYVRGVDGDGKKVTGQVETVRLAENNEVQLVIDNKVVSLRFV 160 Query: 127 IRISN 131 R+S+ Sbjct: 161 ERVSD 165 >gi|216264944|ref|ZP_03436936.1| flagellar hook capping protein [Borrelia burgdorferi 156a] gi|224533148|ref|ZP_03673748.1| flagellar hook capping protein [Borrelia burgdorferi WI91-23] gi|215981417|gb|EEC22224.1| flagellar hook capping protein [Borrelia burgdorferi 156a] gi|224511875|gb|EEF82276.1| flagellar hook capping protein [Borrelia burgdorferi WI91-23] gi|312148217|gb|ADQ30876.1| flagellar hook capping protein [Borrelia burgdorferi JD1] gi|312149592|gb|ADQ29663.1| flagellar hook capping protein [Borrelia burgdorferi N40] Length = 147 Score = 99.6 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 40/130 (30%), Positives = 63/130 (48%), Gaps = 5/130 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 N T +K LG+D FLKLLITQ+++QDPT PMK E +AQ+A FS +EQ Sbjct: 17 NKVKKKTDFNVENISNKVNLGKDDFLKLLITQLRYQDPTNPMKDKEFIAQMAQFSALEQM 76 Query: 64 VQMNSTLQELLKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTE 120 M+ + ++L S + + +GK I G + G V I+ + + + V+ Sbjct: 77 ANMSRSFEKLSSSLEIRKDLDLLGKVIKFQHGDGEIVEGRVTNIK--TGAIPQVMVNGNY 134 Query: 121 IPITTGIRIS 130 + + Sbjct: 135 YVYKNILSVG 144 >gi|289523566|ref|ZP_06440420.1| flagellar hook capping protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503258|gb|EFD24422.1| flagellar hook capping protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 142 Score = 99.6 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 43/136 (31%), Positives = 65/136 (47%), Gaps = 7/136 (5%) Query: 1 MEIN--TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58 M +N + VN + K + K LG+D FLKLLITQ+ HQDP EP+ +E +AQ+A FS Sbjct: 1 MAVNQVSSVNQSYYNEGKREIKNELGKDDFLKLLITQLTHQDPLEPVSDTEFIAQMAQFS 60 Query: 59 QMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSI----SGVVNAIQVSSTGLTAI 114 +EQ + ++ LL S A SYIGK + D + V + + Sbjct: 61 TLEQMTNVAKGVESLL-SVTKLNAQSYIGKEVIYYDDNTGLYQQSSVRSAIFEDGEVYLE 119 Query: 115 TVDNTEIPITTGIRIS 130 + I + ++ Sbjct: 120 LENGKYILLDEIKAVT 135 >gi|302389665|ref|YP_003825486.1| flagellar hook capping protein [Thermosediminibacter oceani DSM 16646] gi|302200293|gb|ADL07863.1| flagellar hook capping protein [Thermosediminibacter oceani DSM 16646] Length = 129 Score = 99.6 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 10/122 (8%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 + + + + LG+D FLKLLITQ+K+Q+P EP+ + E +AQLA FS +EQ +NS + Sbjct: 14 SGDDNPAVGRAQLGKDDFLKLLITQLKYQNPLEPLDSKEYIAQLATFSSLEQLQNLNSQI 73 Query: 71 QELLKSNNLAQASSYIGKN--ITNADGSISGVVNAIQVSSTGLTAITVDNTE-IPITTGI 127 + A S+IGK + +SG++ + L I D + +P+ Sbjct: 74 SAM-------SAVSFIGKTGKARIEEEYVSGIIKGVTFDKGNLNLIIGDEEKLVPLQDVY 126 Query: 128 RI 129 I Sbjct: 127 EI 128 >gi|222095376|ref|YP_002529436.1| flagellar basal body rod modification protein [Bacillus cereus Q1] gi|221239434|gb|ACM12144.1| basal-body rod modification protein [Bacillus cereus Q1] Length = 192 Score = 99.6 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 6/125 (4%) Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---ST 69 + K+ +G+D FLKL + +HQDP M ++ + Q A S MEQ M Sbjct: 41 SAGEQKTPGVMGKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDK 100 Query: 70 LQELLKSNNLAQASSYIGKNITNADG---SISGVVNAIQVSSTGLTAITVDNTEIPITTG 126 LQ + S L ++GK + DG ++G V ++++ + +DN + + Sbjct: 101 LQSTMYSTALDGGMKFLGKYVRGVDGDGKKVTGQVETVRLAENNEVQLVIDNKVVSLRFV 160 Query: 127 IRISN 131 R+S+ Sbjct: 161 ERVSD 165 >gi|15594629|ref|NP_212418.1| flagellar basal body rod modification protein [Borrelia burgdorferi B31] gi|195941362|ref|ZP_03086744.1| flagellar basal body rod modification protein [Borrelia burgdorferi 80a] gi|218249522|ref|YP_002374807.1| flagellar hook capping protein [Borrelia burgdorferi ZS7] gi|221217794|ref|ZP_03589262.1| flagellar hook capping protein [Borrelia burgdorferi 72a] gi|223888939|ref|ZP_03623530.1| flagellar hook capping protein [Borrelia burgdorferi 64b] gi|224533832|ref|ZP_03674420.1| flagellar hook capping protein [Borrelia burgdorferi CA-11.2a] gi|225549019|ref|ZP_03769994.1| flagellar hook capping protein [Borrelia burgdorferi 94a] gi|225550075|ref|ZP_03771035.1| flagellar hook capping protein [Borrelia burgdorferi 118a] gi|226320585|ref|ZP_03796145.1| flagellar hook capping protein [Borrelia burgdorferi 29805] gi|226321602|ref|ZP_03797128.1| flagellar hook capping protein [Borrelia burgdorferi Bol26] gi|1165268|gb|AAA85607.1| YlxG [Borrelia burgdorferi] gi|1196325|gb|AAB51417.1| flagellar hook assembly protein [Borrelia burgdorferi] gi|2688182|gb|AAC66664.1| flagellar hook assembly protein (flgD) [Borrelia burgdorferi B31] gi|218164710|gb|ACK74771.1| flagellar hook capping protein [Borrelia burgdorferi ZS7] gi|221192471|gb|EEE18690.1| flagellar hook capping protein [Borrelia burgdorferi 72a] gi|223885755|gb|EEF56854.1| flagellar hook capping protein [Borrelia burgdorferi 64b] gi|224513125|gb|EEF83488.1| flagellar hook capping protein [Borrelia burgdorferi CA-11.2a] gi|225369187|gb|EEG98640.1| flagellar hook capping protein [Borrelia burgdorferi 118a] gi|225370245|gb|EEG99683.1| flagellar hook capping protein [Borrelia burgdorferi 94a] gi|226232791|gb|EEH31544.1| flagellar hook capping protein [Borrelia burgdorferi Bol26] gi|226234004|gb|EEH32725.1| flagellar hook capping protein [Borrelia burgdorferi 29805] Length = 147 Score = 99.2 bits (246), Expect = 1e-19, Method: Composition-based stats. Identities = 40/130 (30%), Positives = 63/130 (48%), Gaps = 5/130 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 N T +K LG+D FLKLLITQ+++QDPT PMK E +AQ+A FS +EQ Sbjct: 17 NKVKKKTDFNVDNISNKVNLGKDDFLKLLITQLRYQDPTNPMKDKEFIAQMAQFSALEQM 76 Query: 64 VQMNSTLQELLKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTE 120 M+ + ++L S + + +GK I G + G V I+ + + + V+ Sbjct: 77 ANMSRSFEKLSSSLEIRKDLDLLGKVIKFQHGDGEIVEGRVTNIK--TGAIPQVMVNGNY 134 Query: 121 IPITTGIRIS 130 + + Sbjct: 135 YVYKNILSVG 144 >gi|45657071|ref|YP_001157.1| flagellar hook assembly scaffolding protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45600308|gb|AAS69794.1| flagellar hook assembly scaffolding protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 264 Score = 99.2 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 40/115 (34%), Positives = 66/115 (57%), Gaps = 8/115 (6%) Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA 80 K+LG+D FLKLLITQ+ QDPT P+K + +AQ+A FS +EQ +++ +Q++ Sbjct: 50 KSLGKDDFLKLLITQLSSQDPTNPVKDQDFIAQMAQFSSLEQMNNISNGIQKM----GNR 105 Query: 81 QASSYIGKNITNAD----GSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 Q+ S +GK ++ D +I+G+ A+ G T + V+ I + IS+ Sbjct: 106 QSFSLVGKLVSGPDFVNGENIAGIAGALFFDGEGKTFVRVNGRSIDVEQISLISD 160 >gi|206975041|ref|ZP_03235956.1| flagellar hook assembly protein family protein [Bacillus cereus H3081.97] gi|229195965|ref|ZP_04322718.1| Flagellar hook assembly protein [Bacillus cereus m1293] gi|206747060|gb|EDZ58452.1| flagellar hook assembly protein family protein [Bacillus cereus H3081.97] gi|228587524|gb|EEK45589.1| Flagellar hook assembly protein [Bacillus cereus m1293] Length = 192 Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 6/125 (4%) Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---ST 69 + K+ +G+D FLKL ++ +HQDP M ++ + Q A S MEQ M Sbjct: 41 SAGEQKTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDK 100 Query: 70 LQELLKSNNLAQASSYIGKNITNADG---SISGVVNAIQVSSTGLTAITVDNTEIPITTG 126 LQ + S L ++GK + DG ++G V ++++ + +DN + + Sbjct: 101 LQSTMYSTALDGGMKFLGKYVRGIDGDGKKVTGQVETVRLAENNDVQLVIDNKVVSLRFV 160 Query: 127 IRISN 131 R+S+ Sbjct: 161 ERVSD 165 >gi|89895711|ref|YP_519198.1| hypothetical protein DSY2965 [Desulfitobacterium hafniense Y51] gi|89335159|dbj|BAE84754.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 193 Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 35/132 (26%), Positives = 66/132 (50%), Gaps = 14/132 (10%) Query: 14 FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE- 72 +K+ LG+D FLKLL+ ++ +QDP PM + + Q+A FS +EQ M+ +++ Sbjct: 26 AVSDATKEVLGKDDFLKLLVAELTNQDPLSPMDNKDMITQMAQFSSLEQMNNMSKSMENL 85 Query: 73 ------LLKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTG--LTAITVDNT-- 119 L +++ L+Q ++ IGK + + + G+V ++Q L + D Sbjct: 86 VGAFGALFQNSLLSQGAAMIGKYVAGLNTEGKIVEGLVQSVQWLDGNPQLVVLLDDGKYS 145 Query: 120 EIPITTGIRISN 131 I + I +S+ Sbjct: 146 AIEMNEIISVSD 157 >gi|295110894|emb|CBL27644.1| Flagellar hook capping protein [Synergistetes bacterium SGP1] Length = 145 Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 35/94 (37%), Positives = 54/94 (57%), Gaps = 4/94 (4%) Query: 1 MEINTEVNPTQQEFSKSKS---KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVF 57 M +N + S + + L ++AFLKLLI ++ +QDP PM+ E +AQ+A F Sbjct: 1 MPVNGVAGAVNTDPSAATGAVRQNELDKNAFLKLLIAELSNQDPLNPMEDREFIAQMAQF 60 Query: 58 SQMEQSVQMNSTLQELLKSNNLAQASSYIGKNIT 91 S +EQ MN TL+ + +++ A SYIGK I+ Sbjct: 61 SSLEQMQNMNKTLESMAQASKFD-AVSYIGKAIS 93 >gi|217959236|ref|YP_002337784.1| flagellar basal body rod modification protein [Bacillus cereus AH187] gi|229138453|ref|ZP_04267042.1| Flagellar hook assembly protein [Bacillus cereus BDRD-ST26] gi|217062964|gb|ACJ77214.1| flagellar hook assembly protein family protein [Bacillus cereus AH187] gi|228644990|gb|EEL01233.1| Flagellar hook assembly protein [Bacillus cereus BDRD-ST26] Length = 192 Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 6/125 (4%) Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72 + K+ +G+D FLKL ++ +HQDP M ++ + Q A S MEQ M + Sbjct: 41 SAGEQKTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDS 100 Query: 73 L---LKSNNLAQASSYIGKNITNADG---SISGVVNAIQVSSTGLTAITVDNTEIPITTG 126 L + S L ++GK + DG ++G V ++++ + +DN + + Sbjct: 101 LRTTMYSTALDGGMKFLGKYVRGVDGDGKKVTGQVETVRLAENNEVQLVIDNKVVSLRFV 160 Query: 127 IRISN 131 R+S+ Sbjct: 161 ERVSD 165 >gi|269976273|ref|ZP_06183269.1| putative flagellar hook capping protein [Mobiluncus mulieris 28-1] gi|269935602|gb|EEZ92140.1| putative flagellar hook capping protein [Mobiluncus mulieris 28-1] Length = 374 Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 65/129 (50%), Gaps = 7/129 (5%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69 T + +K + LG+D F+KLL+ +K+QDPT+PM ++ + Q + + MEQ +QM Sbjct: 101 TDKAQTKKEDPTKLGKDDFMKLLLATLKYQDPTQPMDTAQLLEQTSTMTNMEQMIQMTEA 160 Query: 70 LQELLKSNNLAQASSYIGKNIT-------NADGSISGVVNAIQVSSTGLTAITVDNTEIP 122 + ++ Q +S +G+ + +G V+A++ + G + + ++ Sbjct: 161 SKRAYEAQQRVQGASMVGRTAVYDLIDDEGNAKTTAGKVDAVEFLAEGKVLAHIGDKKVK 220 Query: 123 ITTGIRISN 131 + + I++ Sbjct: 221 MEDILGIAD 229 >gi|218235843|ref|YP_002366438.1| flagellar basal body rod modification protein [Bacillus cereus B4264] gi|229109209|ref|ZP_04238808.1| Flagellar hook assembly protein [Bacillus cereus Rock1-15] gi|218163800|gb|ACK63792.1| flagellar hook assembly protein family protein [Bacillus cereus B4264] gi|228674219|gb|EEL29464.1| Flagellar hook assembly protein [Bacillus cereus Rock1-15] Length = 192 Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 10/139 (7%) Query: 3 INTEVNPTQQE----FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58 +N +P QQ K+ +G+D FLKL ++ +HQDP M ++ + Q A S Sbjct: 27 VNGVQSPVQQSNGVSAGAQKTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQLS 86 Query: 59 QMEQSVQMN---STLQELLKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLT 112 MEQ M LQ + S L ++GK + DG ++G V ++++ Sbjct: 87 LMEQVQNMTKAVDKLQSTMYSTALDGGMKFLGKYVRGVDGEGNKVTGQVETVRLAENNDV 146 Query: 113 AITVDNTEIPITTGIRISN 131 + ++N + + R+S+ Sbjct: 147 QLVINNKVVSLRFVERVSD 165 >gi|15022423|dbj|BAB62244.1| flagellar protein [Treponema medium] Length = 159 Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 38/131 (29%), Positives = 65/131 (49%), Gaps = 6/131 (4%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 ME++T Q K K+ LG+D FL+LL+ Q+ HQDPT P++ ++ VAQ+A F+ + Sbjct: 29 MEVDTI--NKQNFPEGRKPKQELGKDDFLQLLVAQLTHQDPTSPLEDTQFVAQMAQFTSL 86 Query: 61 EQSVQMNSTLQELLKSNNLAQASSYIGKNI--TNADGSISGVVNAIQVSSTGLTAITVDN 118 EQ MN L + + A + +GK + + G++SG + A + V+ Sbjct: 87 EQLTNMNQNFGMLNRLIGDSSAVNVVGKQVDIEQSSGTVSGTITAATRGEN--PQVQVNG 144 Query: 119 TEIPITTGIRI 129 + + Sbjct: 145 KWYAWSDVQTV 155 >gi|229078935|ref|ZP_04211487.1| Flagellar hook assembly protein [Bacillus cereus Rock4-2] gi|228704349|gb|EEL56783.1| Flagellar hook assembly protein [Bacillus cereus Rock4-2] Length = 192 Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 10/139 (7%) Query: 3 INTEVNPTQQE----FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58 +N +P QQ K+ +G+D FLKL ++ +HQDP M ++ + Q A S Sbjct: 27 VNGVQSPVQQSNGVSAGAQKTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQLS 86 Query: 59 QMEQSVQMN---STLQELLKSNNLAQASSYIGKNITNADG---SISGVVNAIQVSSTGLT 112 MEQ M LQ + S L ++GK + DG ++G V ++++ Sbjct: 87 LMEQVQNMTKAVDKLQSTMYSTALDGGMKFLGKYVRGVDGDGNKVTGQVETVRLAENNDV 146 Query: 113 AITVDNTEIPITTGIRISN 131 + ++N + + R+S+ Sbjct: 147 QLVINNKVVSLRFVERVSD 165 >gi|24215549|ref|NP_713030.1| flagellar hook assembly scaffolding protein [Leptospira interrogans serovar Lai str. 56601] gi|24196694|gb|AAN50048.1| flagellar hook assembly scaffolding protein [Leptospira interrogans serovar Lai str. 56601] Length = 264 Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 40/115 (34%), Positives = 66/115 (57%), Gaps = 8/115 (6%) Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA 80 K+LG+D FLKLLITQ+ QDPT P+K + +AQ+A FS +EQ +++ +Q++ Sbjct: 50 KSLGKDDFLKLLITQLSSQDPTNPVKDQDFIAQMAQFSSLEQMNNISNGIQKM----GNR 105 Query: 81 QASSYIGKNITNAD----GSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 Q+ S +GK ++ D +I+G+ A+ G T + V+ I + IS+ Sbjct: 106 QSFSLVGKLVSGPDFVNGENIAGIAGALFFDGEGKTFVRVNGRSIDVEQISLISD 160 >gi|295696120|ref|YP_003589358.1| flagellar hook capping protein [Bacillus tusciae DSM 2912] gi|295411722|gb|ADG06214.1| flagellar hook capping protein [Bacillus tusciae DSM 2912] Length = 151 Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 64/128 (50%), Gaps = 2/128 (1%) Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65 + S L +++FL+LL+ Q+K+QDP +PM +++ ++QLA FS +EQ Sbjct: 13 NSSGYASPTSVINPNSQLDKNSFLQLLVAQLKNQDPLQPMDSTQFISQLAQFSALEQMTN 72 Query: 66 MNSTLQELLKSNNLAQASSYIGKNITNAD--GSISGVVNAIQVSSTGLTAITVDNTEIPI 123 + ++ + + A+ +IGK I+ D G+I V GL + + +P Sbjct: 73 VAEGQEKAATATEMQAAAEWIGKRISYLDDKGNIQSGVAQAMQVKEGLVYLDLGGLSVPW 132 Query: 124 TTGIRISN 131 ++ + + + Sbjct: 133 SSILEVGD 140 >gi|300870372|ref|YP_003785243.1| flagellar hook capping protein FlgD [Brachyspira pilosicoli 95/1000] gi|300688071|gb|ADK30742.1| flagellar hook capping protein, FlgD [Brachyspira pilosicoli 95/1000] Length = 233 Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 3/108 (2%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 Q F + +K +LG+D FLKLL Q+ HQDP PM + +AQLA FS +EQ ++N L Sbjct: 27 QHNFERDPAKNSLGKDDFLKLLTVQMSHQDPLSPMDNRDMIAQLAQFSSVEQMTEVNKNL 86 Query: 71 QELLKSNNLAQASSYIGKNIT---NADGSISGVVNAIQVSSTGLTAIT 115 + + + S +GK++ A G V + + TG+ Sbjct: 87 ESMKTFYSSQSGYSMLGKSVEVMDEAGNRFLGPVEMVMENDTGVALAV 134 >gi|157692307|ref|YP_001486769.1| flagellar basal body rod modification protein [Bacillus pumilus SAFR-032] gi|157681065|gb|ABV62209.1| flagellar basal body rod modification protein [Bacillus pumilus SAFR-032] Length = 148 Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 42/137 (30%), Positives = 64/137 (46%), Gaps = 10/137 (7%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 N V T K TLG+D FLK+L+TQ+++QDPT P+ E V QLA FS +EQ Sbjct: 8 NRTVTQTDTSSKAEKKTDTLGKDQFLKILLTQLQNQDPTNPLDDREFVTQLATFSSLEQQ 67 Query: 64 VQMNSTLQELLKSNNLAQA--------SSYIGKNITN--ADGSISGVVNAIQVSSTGLTA 113 MN ++ +L + + A +IGK ++ D ISG V +++ + Sbjct: 68 TNMNDSITKLNQLMSTFVAHQDPFTTYVGWIGKEVSGKLDDKDISGTVKSVKNINNEYFL 127 Query: 114 ITVDNTEIPITTGIRIS 130 D +I + Sbjct: 128 YLEDGMKISPWDVTAVG 144 >gi|225552001|ref|ZP_03772941.1| flagellar hook capping protein [Borrelia sp. SV1] gi|225370999|gb|EEH00429.1| flagellar hook capping protein [Borrelia sp. SV1] Length = 147 Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 5/116 (4%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77 +K LG+D FLKLLITQ+++QDPT PMK E +AQ+A FS +EQ M+ + ++L S Sbjct: 31 SNKVNLGKDDFLKLLITQLRYQDPTNPMKDKEFIAQMAQFSALEQMANMSRSFEKLSSSL 90 Query: 78 NLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 + + +GK I G + G V I+ + + + V+ + + Sbjct: 91 EIRKDLDLLGKVIKFQHGDGEIVEGRVTNIK--TGAIPQVMVNGNYYVYKNILSVG 144 >gi|302338084|ref|YP_003803290.1| flagellar hook capping protein [Spirochaeta smaragdinae DSM 11293] gi|301635269|gb|ADK80696.1| flagellar hook capping protein [Spirochaeta smaragdinae DSM 11293] Length = 149 Score = 98.5 bits (244), Expect = 2e-19, Method: Composition-based stats. Identities = 37/114 (32%), Positives = 60/114 (52%), Gaps = 4/114 (3%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79 ++LG+D FLKLL+TQ+++QDPT+PM+ E +AQ+A FS +EQ ++ + + Sbjct: 33 NQSLGKDDFLKLLLTQLQYQDPTKPMEDKEFIAQMAQFSSLEQMNNLSQQFVSVKNTLGR 92 Query: 80 AQASSYIGKNI--TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 A IG+ + D I G V A+ S + V+ T + +SN Sbjct: 93 NAAYDLIGRQVDILQGDQKIHGTVEAV--SGKDYPQLLVNGTYYDYDSVETVSN 144 >gi|298530011|ref|ZP_07017413.1| flagellar hook capping protein [Desulfonatronospira thiodismutans ASO3-1] gi|298509385|gb|EFI33289.1| flagellar hook capping protein [Desulfonatronospira thiodismutans ASO3-1] Length = 241 Score = 98.5 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 3/91 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 + + + LG+ FLKLLITQ+++QDP +PM E VAQLA FS +EQ ++ + Sbjct: 19 NNDIPRDEDPAELGKMDFLKLLITQLENQDPLDPMDDKEFVAQLAQFSSLEQLTNISEGM 78 Query: 71 QELLKSNN---LAQASSYIGKNITNADGSIS 98 + + ++ + A +IGK I IS Sbjct: 79 ESMNENQARQEMLGAVGFIGKEIRADGDGIS 109 >gi|220934393|ref|YP_002513292.1| flagellar hook capping protein [Thioalkalivibrio sp. HL-EbGR7] gi|219995703|gb|ACL72305.1| flagellar hook capping protein [Thioalkalivibrio sp. HL-EbGR7] Length = 226 Score = 98.5 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 35/126 (27%), Positives = 63/126 (50%), Gaps = 8/126 (6%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 +I ++ T E + +K LGQ FL+L+ITQ+++QDP +PM++ E + QLA F + Sbjct: 10 DIMNKLGLTSHETANTKGDDRLGQSDFLRLMITQLENQDPFKPMESGEFLGQLAQFGTVS 69 Query: 62 QSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI-----SGVVNAIQVSSTGLTA 113 + + + S QA++ + +++T I G+ A+QV ++ Sbjct: 70 GIEDLQKSFNRFSQSIASGQALQAAALVDRHVTVPGDMIIMDPAEGMRGAVQVPASAEVV 129 Query: 114 ITVDNT 119 I V N Sbjct: 130 IGVYNQ 135 >gi|206970764|ref|ZP_03231716.1| flagellar hook assembly protein family protein [Bacillus cereus AH1134] gi|228920463|ref|ZP_04083808.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|229069304|ref|ZP_04202594.1| Flagellar hook assembly protein [Bacillus cereus F65185] gi|229178161|ref|ZP_04305532.1| Flagellar hook assembly protein [Bacillus cereus 172560W] gi|206734400|gb|EDZ51570.1| flagellar hook assembly protein family protein [Bacillus cereus AH1134] gi|228605291|gb|EEK62741.1| Flagellar hook assembly protein [Bacillus cereus 172560W] gi|228713791|gb|EEL65676.1| Flagellar hook assembly protein [Bacillus cereus F65185] gi|228839093|gb|EEM84389.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 192 Score = 98.5 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 10/139 (7%) Query: 3 INTEVNPTQQE----FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58 +N +P QQ K+ +G+D FLKL ++ +HQDP M ++ + Q A S Sbjct: 27 VNGVQSPVQQSNGVSAGAQKTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQLS 86 Query: 59 QMEQSVQMN---STLQELLKSNNLAQASSYIGKNITNADG---SISGVVNAIQVSSTGLT 112 MEQ M LQ + S L ++GK + DG ++G V ++++ Sbjct: 87 LMEQVQNMTKAVDKLQSTMYSTALDGGMKFLGKYVRGVDGDGNKVTGQVETVRLAENNDV 146 Query: 113 AITVDNTEIPITTGIRISN 131 + ++N + + R+S+ Sbjct: 147 QLVINNKVVSLRFVERVSD 165 >gi|296445191|ref|ZP_06887151.1| flagellar hook capping protein [Methylosinus trichosporium OB3b] gi|296257365|gb|EFH04432.1| flagellar hook capping protein [Methylosinus trichosporium OB3b] Length = 134 Score = 98.5 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 53/108 (49%), Positives = 78/108 (72%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82 LG D FL LL+T++++QDPT P+ +++ V+QLA FS +EQ V+ N TL +L S +L QA Sbjct: 27 LGYDQFLTLLVTEMQNQDPTNPVDSTQTVSQLASFSAVEQQVKTNDTLTSMLASQSLTQA 86 Query: 83 SSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 S+IGK +T+ADGS+SGVV ++ + S+ TA D + I +TTGI +S Sbjct: 87 QSFIGKTVTSADGSVSGVVASVTIGSSSQTATLTDGSTIDLTTGITVS 134 >gi|253573525|ref|ZP_04850868.1| flagellar hook capping protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251847053|gb|EES75058.1| flagellar hook capping protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 167 Score = 98.5 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 44/142 (30%), Positives = 72/142 (50%), Gaps = 22/142 (15%) Query: 8 NPTQQEFSKSKSK-KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66 N +Q K+ +K LG+DAFLKL+I Q+++QDP PM ++ VAQ+A F+ +EQ + Sbjct: 13 NYSQSNVQKASTKSNELGKDAFLKLMIAQMQNQDPLSPMDNTQMVAQIAQFTSVEQLTNI 72 Query: 67 NSTLQELLKSNNLAQASSYIGKNITNADGSIS------------------GVVNAIQVSS 108 + + L +S L S IGK +T + + G+V +I V S Sbjct: 73 SEQIAALGES--LGNDSGLIGKEVTWVTETKTGNYDVSTGKAEVIIEKESGIVESIIVRS 130 Query: 109 TGLTAITVDNTEIPITTGIRIS 130 G+ + V + EI I+ ++ Sbjct: 131 -GVHYVKVGDKEIKISDIEQVG 151 >gi|228938866|ref|ZP_04101466.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971747|ref|ZP_04132368.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978356|ref|ZP_04138733.1| Flagellar hook assembly protein [Bacillus thuringiensis Bt407] gi|228781373|gb|EEM29574.1| Flagellar hook assembly protein [Bacillus thuringiensis Bt407] gi|228787837|gb|EEM35795.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228820715|gb|EEM66740.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326939366|gb|AEA15262.1| flagellar basal body rod modification protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 192 Score = 98.5 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 10/139 (7%) Query: 3 INTEVNPTQQE----FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58 +N +P QQ K+ +G+D FLKL ++ +HQDP M ++ + Q A S Sbjct: 27 VNGVQSPVQQSNGVSAGAQKTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQLS 86 Query: 59 QMEQSVQMN---STLQELLKSNNLAQASSYIGKNITNADG---SISGVVNAIQVSSTGLT 112 MEQ M LQ + S L ++GK + DG ++G V ++++ Sbjct: 87 LMEQVQNMTKAVDKLQSTMYSTALDGGMKFLGKYVRGVDGDGNKVTGQVETVRLAENNDV 146 Query: 113 AITVDNTEIPITTGIRISN 131 + ++N + + R+S+ Sbjct: 147 QLVINNKVVSLRFVERVSD 165 >gi|224531754|ref|ZP_03672386.1| flagellar hook capping protein [Borrelia valaisiana VS116] gi|224511219|gb|EEF81625.1| flagellar hook capping protein [Borrelia valaisiana VS116] Length = 147 Score = 98.5 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 39/116 (33%), Positives = 61/116 (52%), Gaps = 5/116 (4%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77 +K LG+D FLKLLITQ+++QDPT PMK E +AQ+A FS +EQ M+ + ++L S Sbjct: 31 ANKVNLGKDDFLKLLITQLRYQDPTNPMKDKEFIAQMAQFSSLEQMANMSKSFEKLSSSL 90 Query: 78 NLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 + + +GK I G + G V I+ + + I V+ + + Sbjct: 91 EIRKDLDLLGKVIKFQHGDGEIVKGRVTNIK--TGAIPQIMVNGNYYVYKNILSVG 144 >gi|114320056|ref|YP_741739.1| flagellar hook capping protein [Alkalilimnicola ehrlichii MLHE-1] gi|114226450|gb|ABI56249.1| flagellar hook capping protein [Alkalilimnicola ehrlichii MLHE-1] Length = 222 Score = 98.5 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 32/106 (30%), Positives = 61/106 (57%), Gaps = 11/106 (10%) Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67 + ++ + ++ + LGQD FLKL+ITQ+++QDP PM++ E ++Q+A F+ Q+ Sbjct: 10 DYSRAQPTQREPAGELGQDDFLKLMITQLQNQDPMNPMESGEFMSQIASFTTASGMDQLQ 69 Query: 68 STLQEL---LKSNNLAQASSYIGKNITN--------ADGSISGVVN 102 + E +++N QA+S +G+ + ADG ++G+V Sbjct: 70 KSFSEFQQDMRANQALQAASLVGREVLVETDAGRLPADGEMTGIVQ 115 >gi|229096238|ref|ZP_04227211.1| Flagellar hook assembly protein [Bacillus cereus Rock3-29] gi|229102352|ref|ZP_04233060.1| Flagellar hook assembly protein [Bacillus cereus Rock3-28] gi|229115193|ref|ZP_04244603.1| Flagellar hook assembly protein [Bacillus cereus Rock1-3] gi|228668333|gb|EEL23765.1| Flagellar hook assembly protein [Bacillus cereus Rock1-3] gi|228680999|gb|EEL35168.1| Flagellar hook assembly protein [Bacillus cereus Rock3-28] gi|228687198|gb|EEL41103.1| Flagellar hook assembly protein [Bacillus cereus Rock3-29] Length = 192 Score = 98.1 bits (243), Expect = 3e-19, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 64/139 (46%), Gaps = 10/139 (7%) Query: 3 INTEVNPTQQ----EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58 +N +P QQ K+ +G+D FLKL ++ +HQDP M ++ + Q A S Sbjct: 27 VNGVQSPVQQTNGVSAGAQKTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQLS 86 Query: 59 QMEQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADG---SISGVVNAIQVSSTGLT 112 MEQ M + L + S L ++GK + DG ++G V ++++ Sbjct: 87 LMEQVQNMTKAVDSLRTTMYSTALDGGMKFLGKYVRGVDGDGNKVTGQVETVRLAENNDV 146 Query: 113 AITVDNTEIPITTGIRISN 131 + ++N + + R+S+ Sbjct: 147 QLIINNKVVSLRFVERVSD 165 >gi|328948414|ref|YP_004365751.1| flagellar hook capping protein [Treponema succinifaciens DSM 2489] gi|328448738|gb|AEB14454.1| flagellar hook capping protein [Treponema succinifaciens DSM 2489] Length = 149 Score = 98.1 bits (243), Expect = 3e-19, Method: Composition-based stats. Identities = 41/114 (35%), Positives = 62/114 (54%), Gaps = 4/114 (3%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77 K ++ LG+D FLKLLITQ+ +QDPT PM+ +E +AQ+A FS +EQ MN ++ Sbjct: 35 KVQRDLGKDDFLKLLITQLSNQDPTSPMENTEFIAQMAQFSSLEQMTNMNQEFAKMNSML 94 Query: 78 NLAQASSYIGKNI--TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129 +QA IGK + T D +GVV A+ + + V+N + + Sbjct: 95 VSSQAVGTIGKTVDITLGDTKTTGVVEAVTYGAN--PQVRVNNMYYDMKQISAV 146 >gi|256830200|ref|YP_003158928.1| flagellar hook capping protein [Desulfomicrobium baculatum DSM 4028] gi|256579376|gb|ACU90512.1| flagellar hook capping protein [Desulfomicrobium baculatum DSM 4028] Length = 226 Score = 98.1 bits (243), Expect = 3e-19, Method: Composition-based stats. Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 6/111 (5%) Query: 14 FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73 + LG+DAFLKLL+TQ+++QDP P+ E +AQLA FS +EQ ++ ++ L Sbjct: 15 ADTAAKNDVLGKDAFLKLLVTQLQNQDPLNPLDDKEFIAQLAQFSSLEQMTNISEGIKGL 74 Query: 74 L---KSNNLAQASSYIGKNITNADGSISG---VVNAIQVSSTGLTAITVDN 118 ++ A +YIGK +T + I+ V + + G A N Sbjct: 75 SDKTAQQDMLSAVNYIGKEVTASGDGITKSGNYVTPVYFTLGGAAAQVYAN 125 >gi|203287744|ref|YP_002222759.1| flagellar hook assembly protein [Borrelia recurrentis A1] gi|201084964|gb|ACH94538.1| flagellar hook assembly protein [Borrelia recurrentis A1] Length = 146 Score = 98.1 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 60/115 (52%), Gaps = 5/115 (4%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78 + LG+D FLKLL+TQ+K+QDPTEPMK E ++Q+A FS +EQ MN + + L Sbjct: 31 KESNLGRDDFLKLLLTQLKYQDPTEPMKDKEFISQMAQFSALEQMTNMNKSFENLSSILG 90 Query: 79 LAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 + + + +GK + + I G V +++ I +D + + + Sbjct: 91 VNKDLNLLGKIVEFENVEGKIIKGKVTSVKAGVN--PQIMIDGKYYVYSNVLSVG 143 >gi|138894747|ref|YP_001125200.1| flagellar basal body rod modification protein [Geobacillus thermodenitrificans NG80-2] gi|196247631|ref|ZP_03146333.1| flagellar hook capping protein [Geobacillus sp. G11MC16] gi|134266260|gb|ABO66455.1| Flagellar hook assembly protein [Geobacillus thermodenitrificans NG80-2] gi|196212415|gb|EDY07172.1| flagellar hook capping protein [Geobacillus sp. G11MC16] Length = 142 Score = 98.1 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 65/120 (54%), Gaps = 5/120 (4%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75 + + LG+D FLK+L+ Q+++QDP PM+ E +AQ+A FS +EQ + + + +Q+ ++ Sbjct: 20 RKTGDQILGKDDFLKILLAQLQNQDPLNPMEDREFIAQMASFSSLEQMMNIANLMQQWMQ 79 Query: 76 SN---NLAQASSYIGKNITNA--DGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 ++ L + S +IGK + D ++S VV ++ + + T I ++ Sbjct: 80 ASGRDALLRYSEWIGKTVHWQEDDSTMSAVVQSVMQKDGKIVLELNNGTTIAADVVTKVE 139 >gi|304404251|ref|ZP_07385913.1| flagellar hook capping protein [Paenibacillus curdlanolyticus YK9] gi|304347229|gb|EFM13061.1| flagellar hook capping protein [Paenibacillus curdlanolyticus YK9] Length = 163 Score = 98.1 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 41/133 (30%), Positives = 71/133 (53%), Gaps = 10/133 (7%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 Q+ + +K TLG+D FLK+L+TQ+++QDP++P++ + +AQ+A FS +EQ + Sbjct: 14 NYSTSNVQKAAATKKDTTLGKDDFLKILVTQLRNQDPSQPLQDRDFIAQMAQFSSVEQLM 73 Query: 65 QMNSTLQELLKSNNLAQASSYIGKNI-------TNADGSISGVVNAIQVSSTGLTAITVD 117 M+ + +L NL ASS IG + T + SG+V AI + G+ V Sbjct: 74 NMSEEMTKLR--QNLGSASSMIGMTVEWNGMSDTGIGTTYSGLVEAISIK-DGVQYAKVG 130 Query: 118 NTEIPITTGIRIS 130 + + + I+ Sbjct: 131 DKTVKVDDLTSIT 143 >gi|307699887|ref|ZP_07636938.1| flagellar hook capping protein [Mobiluncus mulieris FB024-16] gi|307614925|gb|EFN94143.1| flagellar hook capping protein [Mobiluncus mulieris FB024-16] Length = 335 Score = 98.1 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 64/129 (49%), Gaps = 7/129 (5%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69 T + +K LG+D F+KLL+ +K+QDPT+PM ++ + Q + + MEQ +QM Sbjct: 65 TDKAQTKKDDPTKLGKDDFMKLLLATLKYQDPTQPMDTAQLLEQTSTMTNMEQMIQMTEA 124 Query: 70 LQELLKSNNLAQASSYIGKNIT-------NADGSISGVVNAIQVSSTGLTAITVDNTEIP 122 + ++ Q +S +G+ + +G V+A++ + G + + ++ Sbjct: 125 SKRAYEAQQRVQGASMVGRTAVYDLIDDEGNAKTTAGKVDAVEFLAEGKVLAHIGDKKVK 184 Query: 123 ITTGIRISN 131 + + I++ Sbjct: 185 MEDILGIAD 193 >gi|75761136|ref|ZP_00741128.1| Basal-body rod modification protein flgD [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218896685|ref|YP_002445096.1| flagellar hook assembly protein family protein [Bacillus cereus G9842] gi|228900334|ref|ZP_04064564.1| Flagellar hook assembly protein [Bacillus thuringiensis IBL 4222] gi|228907386|ref|ZP_04071244.1| Flagellar hook assembly protein [Bacillus thuringiensis IBL 200] gi|228964736|ref|ZP_04125843.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar sotto str. T04001] gi|74491364|gb|EAO54588.1| Basal-body rod modification protein flgD [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218540760|gb|ACK93154.1| flagellar hook assembly protein family protein [Bacillus cereus G9842] gi|228794986|gb|EEM42485.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar sotto str. T04001] gi|228852247|gb|EEM97043.1| Flagellar hook assembly protein [Bacillus thuringiensis IBL 200] gi|228859369|gb|EEN03799.1| Flagellar hook assembly protein [Bacillus thuringiensis IBL 4222] Length = 192 Score = 97.7 bits (242), Expect = 4e-19, Method: Composition-based stats. Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 10/139 (7%) Query: 3 INTEVNPTQQE----FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58 +N +P QQ K+ +G+D FLKL ++ +HQDP M ++ + Q A S Sbjct: 27 VNGVQSPVQQSNGVSAGAQKTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQLS 86 Query: 59 QMEQSVQMN---STLQELLKSNNLAQASSYIGKNITNADG---SISGVVNAIQVSSTGLT 112 MEQ M LQ + S L ++GK + DG ++G V ++++ Sbjct: 87 LMEQVQNMTKAVDKLQSTMYSTALDGGMKFLGKYVRGVDGDGNKVTGQVETVRLAENNDV 146 Query: 113 AITVDNTEIPITTGIRISN 131 + ++N + + R+S+ Sbjct: 147 QLVINNKVVSLRFVERVSD 165 >gi|220904529|ref|YP_002479841.1| flagellar hook capping protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868828|gb|ACL49163.1| flagellar hook capping protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 284 Score = 97.7 bits (242), Expect = 4e-19, Method: Composition-based stats. Identities = 42/135 (31%), Positives = 73/135 (54%), Gaps = 7/135 (5%) Query: 3 INTEVNPTQQEFSKSKSKK---TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59 I +N T EF+ + SK+ L +D+F+ LL+TQ K+QDP PM+ E +AQ+A FS Sbjct: 4 ITQSLNRTNNEFNTALSKQKGSNLDKDSFMLLLVTQFKYQDPLNPMEDKEFIAQMAQFSS 63 Query: 60 MEQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITV 116 +EQ + +N++++ L + + A+SYIGK +T + +I G V + +T Sbjct: 64 LEQLMNLNTSMEGLTNATNNQQMINATSYIGKQVTVSGNTI-GKVTDETTKESTITRFRY 122 Query: 117 DNTEIPITTGIRISN 131 + + I + + Sbjct: 123 APADNTVGGTITVRD 137 >gi|94987009|ref|YP_594942.1| flagellar hook capping protein [Lawsonia intracellularis PHE/MN1-00] gi|94731258|emb|CAJ54621.1| Flagellar hook capping protein [Lawsonia intracellularis PHE/MN1-00] Length = 279 Score = 97.7 bits (242), Expect = 5e-19, Method: Composition-based stats. Identities = 37/97 (38%), Positives = 55/97 (56%), Gaps = 3/97 (3%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 + V+ FS+ K LG++ FLKLL+TQ K+QDP PM+ E +AQLA FS +EQ + Sbjct: 7 SGVSSATGIFSQQAGKSELGKEDFLKLLVTQFKYQDPLNPMEDKEFIAQLAQFSALEQQM 66 Query: 65 QMNSTLQELL---KSNNLAQASSYIGKNITNADGSIS 98 N ++ LL + A+S+IGK + +S Sbjct: 67 STNEKMESLLNLQTQQQMISAASFIGKEVAARGYGVS 103 >gi|312879591|ref|ZP_07739391.1| flagellar hook capping protein [Aminomonas paucivorans DSM 12260] gi|310782882|gb|EFQ23280.1| flagellar hook capping protein [Aminomonas paucivorans DSM 12260] Length = 139 Score = 97.7 bits (242), Expect = 5e-19, Method: Composition-based stats. Identities = 34/114 (29%), Positives = 62/114 (54%), Gaps = 4/114 (3%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79 K LG+D FLKLLI Q+ +QDP +P+K + +AQ+A F+ +EQ+ M ++ L K + + Sbjct: 27 KNELGKDDFLKLLIAQLTNQDPLDPLKDQDFIAQMAQFTALEQTTNMAKGIETLTKLS-M 85 Query: 80 AQASSYIGKNITNAD---GSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 A Y+G+ + D S +G V ++ +T D + + + +++ Sbjct: 86 TSAVGYVGRVVGYTDDEGNSKAGTVQYVEFKDGAVTLKLTDGSSLALDKVEQVA 139 >gi|297617145|ref|YP_003702304.1| flagellar hook capping protein [Syntrophothermus lipocalidus DSM 12680] gi|297144982|gb|ADI01739.1| flagellar hook capping protein [Syntrophothermus lipocalidus DSM 12680] Length = 171 Score = 97.7 bits (242), Expect = 5e-19, Method: Composition-based stats. Identities = 46/143 (32%), Positives = 72/143 (50%), Gaps = 15/143 (10%) Query: 1 MEINTEVNPTQQEFSKSKSKKT-LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59 M ++ + S +K LG+D F KLLIT++K+QDP EPMK E +AQ+A FS Sbjct: 1 MPVSGVTSSESSTAITSAAKSQILGKDDFFKLLITELKYQDPLEPMKDREFIAQMASFSS 60 Query: 60 MEQSVQMNSTLQELLKSNNL-----------AQASSYIGKNI--TNADGSISGVVNAIQV 106 +EQ MN+ LQ L + N +A + +G+ I A G+ G V +I V Sbjct: 61 LEQMYNMNTNLQSLSTALNSYVSTLSSNLSWQEALALLGQEIEFETAAGTACGRVESI-V 119 Query: 107 SSTGLTAITVDNTEIPITTGIRI 129 G+ +TV+ ++ + + Sbjct: 120 LKDGVPYLTVNGEQVSLAQVTSV 142 >gi|146278629|ref|YP_001168788.1| flagellar basal body rod modification protein [Rhodobacter sphaeroides ATCC 17025] gi|145556870|gb|ABP71483.1| flagellar hook capping protein [Rhodobacter sphaeroides ATCC 17025] Length = 218 Score = 97.7 bits (242), Expect = 5e-19, Method: Composition-based stats. Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 3/92 (3%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 ME+++ +PT S T + FL++L TQ+++QDP PM++ + QLA FS + Sbjct: 1 MEVSSATSPTAGSAPASGRSTTSDYETFLRMLTTQLQNQDPLNPMESDDFAMQLATFSGV 60 Query: 61 EQSVQMNSTLQELLKS---NNLAQASSYIGKN 89 EQ V+ N L + S L++ + +IG+ Sbjct: 61 EQQVRTNQILTGMSGSFGAMGLSELAGWIGRE 92 >gi|149182510|ref|ZP_01860983.1| flagellar basal body rod modification protein D [Bacillus sp. SG-1] gi|148849770|gb|EDL63947.1| flagellar basal body rod modification protein D [Bacillus sp. SG-1] Length = 211 Score = 97.3 bits (241), Expect = 6e-19, Method: Composition-based stats. Identities = 34/140 (24%), Positives = 73/140 (52%), Gaps = 14/140 (10%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 + + + Q+ + K LG+D F+K+L+TQ+++QDP PM+ + +AQ+A FS +EQ Sbjct: 7 SNLLLSSLQQKQREGGKDVLGKDDFMKILMTQLQNQDPLNPMQDKDFIAQMATFSTLEQI 66 Query: 64 VQMNSTLQELLK---SNNLAQASSYIGKNITN------ADGSIS-----GVVNAIQVSST 109 ++ +++ ++ NNL + ++GK IT ++G G+V++++ Sbjct: 67 TNLSKSMETFIEAQGQNNLIAYNQFVGKEITWHKLEESSEGRTEIKEGKGIVSSVRFQDN 126 Query: 110 GLTAITVDNTEIPITTGIRI 129 + I + T + ++ Sbjct: 127 EVQFIMENGTILAPGNVSQV 146 >gi|284041519|ref|YP_003391859.1| flagellar hook capping protein [Conexibacter woesei DSM 14684] gi|283945740|gb|ADB48484.1| flagellar hook capping protein [Conexibacter woesei DSM 14684] Length = 152 Score = 97.3 bits (241), Expect = 6e-19, Method: Composition-based stats. Identities = 40/131 (30%), Positives = 67/131 (51%), Gaps = 12/131 (9%) Query: 1 MEINTEVNPTQQEFSKSKSKKT-LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59 ++ VN + S +++ LG+D FLKLLI Q+++QDP P +E + Q+ FS Sbjct: 3 VDPTNPVNNAPATYDNSTRRESFLGKDDFLKLLIGQMQNQDPLNPTDGAEYMGQMTQFSI 62 Query: 60 MEQSVQMNSTLQELLKSNNLAQASSYIGKNIT-----NADG-----SISGVVNAIQVSST 109 +EQ + T Q ++ AQA IG+ ++ N DG S +G V ++ +S+ Sbjct: 63 LEQITNLGQTTQAAASNDYDAQAIRLIGQTVSYLARVNEDGRSVLRSFTGRVESVTFTSS 122 Query: 110 GLTAITVDNTE 120 G +T+D Sbjct: 123 G-PQLTIDGRT 132 >gi|119477954|ref|ZP_01618054.1| Flagellar hook capping protein [marine gamma proteobacterium HTCC2143] gi|119448867|gb|EAW30109.1| Flagellar hook capping protein [marine gamma proteobacterium HTCC2143] Length = 224 Score = 97.3 bits (241), Expect = 6e-19, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 68/116 (58%), Gaps = 11/116 (9%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 +E++ ++ + K+ LGQD FL+L++TQ+++Q+P +P SE VAQLA FS +E Sbjct: 11 SELSAREKYAPANTEKQELGQDVFLELMVTQMRNQNPLDPQDNSEFVAQLAQFSSVEGLD 70 Query: 65 QMNSTLQEL---LKSNNLAQASSYIGKNIT--------NADGSISGVVNAIQVSST 109 ++N+T++ +SN QAS+ +G+++ ADG ++G + Q + Sbjct: 71 KLNNTMEGFVGSFQSNQALQASALVGRSVKVDSDTSYLAADGRVAGTIELPQSTDD 126 >gi|288553058|ref|YP_003424993.1| flagellar basal body rod modification protein [Bacillus pseudofirmus OF4] gi|288544218|gb|ADC48101.1| flagellar basal body rod modification protein [Bacillus pseudofirmus OF4] Length = 169 Score = 97.3 bits (241), Expect = 6e-19, Method: Composition-based stats. Identities = 42/122 (34%), Positives = 64/122 (52%), Gaps = 14/122 (11%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 Q + + + + LG+D FLKLLITQ+++QDP+ PM E +AQ+A FS +EQ MN+T+ Sbjct: 13 QPKPTSNTGQNMLGKDDFLKLLITQLQNQDPSNPMDDREFIAQMAQFSSLEQMTNMNNTI 72 Query: 71 QELL---KSNNLAQASSYIGKNITNADGSISG-----------VVNAIQVSSTGLTAITV 116 Q+ + S +L Q S IGK + V +++V G I + Sbjct: 73 QKFVDVQTSQSLVQFSELIGKEVKWVQEVDVDEYRTELQYNDNKVQSVKVDFDGTIRILL 132 Query: 117 DN 118 DN Sbjct: 133 DN 134 >gi|222147594|ref|YP_002548551.1| flagellar basal body rod modification protein [Agrobacterium vitis S4] gi|221734582|gb|ACM35545.1| hook formation protein [Agrobacterium vitis S4] Length = 151 Score = 97.3 bits (241), Expect = 6e-19, Method: Composition-based stats. Identities = 43/109 (39%), Positives = 77/109 (70%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82 + ++FL+LLI Q+++QDPT+PM A+EQV+QLA +SQ+EQS++ N+ L+ +L++ L +A Sbjct: 41 MDYNSFLQLLIAQLQNQDPTDPMSATEQVSQLATYSQVEQSIKTNTLLRSMLQAEALTRA 100 Query: 83 SSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 +GK +T++DG +GVV+ ++V+ +T T + + TG+ S+ Sbjct: 101 GDIVGKTVTSSDGETTGVVSNVKVADDAVTLTTSSGGTVELQTGVNFSS 149 >gi|242277988|ref|YP_002990117.1| flagellar hook capping protein [Desulfovibrio salexigens DSM 2638] gi|242120882|gb|ACS78578.1| flagellar hook capping protein [Desulfovibrio salexigens DSM 2638] Length = 220 Score = 97.3 bits (241), Expect = 6e-19, Method: Composition-based stats. Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 3/101 (2%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 ++ +N + + K L +DAFLKL +TQ+K+QDP PM EQ+AQLA FS + Sbjct: 2 IDTTAYLNSVNKNATPKTPSKDLNKDAFLKLFVTQLKNQDPVNPMDNKEQLAQLAQFSTV 61 Query: 61 EQSVQMNSTLQELLKSNNL---AQASSYIGKNITNADGSIS 98 E+ ++ + L K+ N A+ YIGK + +S Sbjct: 62 ERLTNISKAMDGLTKTVNAMMGLNATGYIGKTVMAKGFGVS 102 >gi|219685744|ref|ZP_03540555.1| flagellar hook capping protein [Borrelia garinii Far04] gi|219672683|gb|EED29711.1| flagellar hook capping protein [Borrelia garinii Far04] Length = 147 Score = 97.3 bits (241), Expect = 6e-19, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 61/116 (52%), Gaps = 5/116 (4%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77 +K LG+D FLKLLITQ+++QDPT PMK E ++Q+A FS +EQ M+ + ++L S Sbjct: 31 SNKVNLGKDDFLKLLITQLRYQDPTNPMKDKEFISQMAQFSALEQMTNMSKSFEKLSSSL 90 Query: 78 NLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 + + +GK I G + G V I+ + + + V+ + + Sbjct: 91 GIRRDLDLLGKVIKFQHGDGEVVKGRVTNIK--TGAIPQVMVNGNYYVYKNILSVG 144 >gi|218680426|ref|ZP_03528323.1| flagellar basal body rod modification protein [Rhizobium etli CIAT 894] Length = 112 Score = 97.3 bits (241), Expect = 6e-19, Method: Composition-based stats. Identities = 51/98 (52%), Positives = 73/98 (74%) Query: 34 TQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNA 93 Q+K+QDPT+PMKASEQVAQLA FSQ+EQ+VQ N+ L LL S++L QASSY+GK + +A Sbjct: 1 AQMKNQDPTDPMKASEQVAQLATFSQVEQTVQTNTKLDTLLASSSLTQASSYVGKYMESA 60 Query: 94 DGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 DG++ G + +++V S G+ A T D I + GI +++ Sbjct: 61 DGTVKGTIESVKVYSDGIIATTTDGGNILVQAGITVAD 98 >gi|187918158|ref|YP_001883721.1| flagellar basal body rod modification protein [Borrelia hermsii DAH] gi|119861006|gb|AAX16801.1| basal-body rod modification protein FlgD [Borrelia hermsii DAH] Length = 144 Score = 97.3 bits (241), Expect = 7e-19, Method: Composition-based stats. Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 5/124 (4%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69 + + + LG+D FLKLLITQ+K+QDPT+PMK E +AQ+A FS +EQ M+ + Sbjct: 20 SNSKVQRGVKGSNLGRDDFLKLLITQLKYQDPTDPMKDKEFIAQMAQFSALEQMTNMSKS 79 Query: 70 LQELLKSNNLAQASSYIGKNI--TNADGS-ISGVVNAIQVSSTGLTAITVDNTEIPITTG 126 + L + + +GK + + DG I G V I+ + + I +D Sbjct: 80 FESLSSALGANKDLDLLGKIVEFEHTDGEIIKGKVTNIK--TGVVPQIMIDGKYYVYNNI 137 Query: 127 IRIS 130 + + Sbjct: 138 LSVG 141 >gi|219684639|ref|ZP_03539582.1| flagellar hook capping protein [Borrelia garinii PBr] gi|219672001|gb|EED29055.1| flagellar hook capping protein [Borrelia garinii PBr] Length = 147 Score = 96.9 bits (240), Expect = 8e-19, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 60/116 (51%), Gaps = 5/116 (4%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77 +K LG+D FLKLLITQ+++QDPT PMK E ++Q+A FS +EQ M+ + + L S Sbjct: 31 SNKVNLGKDDFLKLLITQLRYQDPTNPMKDKEFISQMAQFSALEQMTNMSKSFERLSSSL 90 Query: 78 NLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 + + +GK I G + G V I+ + + + V+ + + Sbjct: 91 GIRRDLDLLGKVIKFQHGDGEVVKGRVTNIK--TGAIPQVMVNGNYYVYKNILSVG 144 >gi|306817693|ref|ZP_07451435.1| flagellar hook assembly protein FlgD [Mobiluncus mulieris ATCC 35239] gi|304649507|gb|EFM46790.1| flagellar hook assembly protein FlgD [Mobiluncus mulieris ATCC 35239] Length = 334 Score = 96.9 bits (240), Expect = 8e-19, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 65/129 (50%), Gaps = 7/129 (5%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69 T + +K + LG+D F+KLL+ +K+QDPT+PM ++ + Q + + MEQ +QM Sbjct: 70 TDKAQTKKEDPTKLGKDDFMKLLLATLKYQDPTQPMDTAQLLEQTSTMTNMEQMIQMTEA 129 Query: 70 LQELLKSNNLAQASSYIGKNIT-------NADGSISGVVNAIQVSSTGLTAITVDNTEIP 122 + ++ Q +S +G+ + +G V+A++ + G + + ++ Sbjct: 130 SKRAYEAQQRVQGASMVGRTAVYDLIDDEGNAKTTAGKVDAVEFLAEGKVLAHIGDKKVK 189 Query: 123 ITTGIRISN 131 + + I++ Sbjct: 190 MEDILGIAD 198 >gi|51894132|ref|YP_076823.1| flagellar hook assembly protein [Symbiobacterium thermophilum IAM 14863] gi|51857821|dbj|BAD41979.1| flagellar hook assembly protein [Symbiobacterium thermophilum IAM 14863] Length = 139 Score = 96.9 bits (240), Expect = 9e-19, Method: Composition-based stats. Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 13/123 (10%) Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 Q + LG+ FL+LL+TQ+++QDP P+ E +AQLA FS +EQ Sbjct: 19 QTAESRRPTDQLGKMEFLQLLVTQLRYQDPLNPIDDREFMAQLAQFSALEQMT------- 71 Query: 72 ELLKSNNLAQASSYIGKNI----TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGI 127 E ++ L+ S +G + T I G+V A+++ S G + + N EI + I Sbjct: 72 ENVRWARLSYGLSLVGAAVKYWGTEGQPEI-GIVYAVRIDS-GEPLLNLGNREIRLEQVI 129 Query: 128 RIS 130 ++ Sbjct: 130 EVA 132 >gi|227876746|ref|ZP_03994855.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243] gi|227842643|gb|EEJ52843.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243] Length = 336 Score = 96.9 bits (240), Expect = 9e-19, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 65/129 (50%), Gaps = 7/129 (5%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69 T + +K + LG+D F+KLL+ +K+QDPT+PM ++ + Q + + MEQ +QM Sbjct: 72 TDKAQTKKEDPTKLGKDDFMKLLLATLKYQDPTQPMDTAQLLEQTSTMTNMEQMIQMTEA 131 Query: 70 LQELLKSNNLAQASSYIGKNIT-------NADGSISGVVNAIQVSSTGLTAITVDNTEIP 122 + ++ Q +S +G+ + +G V+A++ + G + + ++ Sbjct: 132 SKRAYEAQQRVQGASMVGRTAVYDLIDDEGNAKTTAGKVDAVEFLAEGKVLAHIGDKKVK 191 Query: 123 ITTGIRISN 131 + + I++ Sbjct: 192 MEDILGIAD 200 >gi|51598544|ref|YP_072732.1| flagellar basal body rod modification protein [Borrelia garinii PBi] gi|51573115|gb|AAU07140.1| flagellar hook assembly protein [Borrelia garinii PBi] Length = 147 Score = 96.9 bits (240), Expect = 9e-19, Method: Composition-based stats. Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 5/116 (4%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77 SK LG+D FLKLLITQ+++QDPT PMK E ++Q+A FS +EQ M+ + ++L S Sbjct: 31 SSKVNLGKDDFLKLLITQLRYQDPTNPMKDKEFISQMAQFSALEQMTNMSKSFEKLSSSL 90 Query: 78 NLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 + + +GK I G + G V I+ + + + V+ + + Sbjct: 91 GIRRDLDLLGKVIKFQHGDGEVVKGRVTNIK--TGTIPQVMVNGNYYVYKNILSVG 144 >gi|56964027|ref|YP_175758.1| flagellar basal body rod modification protein [Bacillus clausii KSM-K16] gi|56910270|dbj|BAD64797.1| flagellar basal-body rod modification protein FlgD [Bacillus clausii KSM-K16] Length = 144 Score = 96.5 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 41/125 (32%), Positives = 72/125 (57%), Gaps = 6/125 (4%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 +++ + + + + + LGQDAFLKLLITQ+++QDP+ P++ E +AQLA FSQ+E Sbjct: 3 QVDPSLWLSSSQNQQRQPNNALGQDAFLKLLITQLQNQDPSNPIEDREFIAQLATFSQLE 62 Query: 62 QSVQMNSTLQELL---KSNNLAQASSYIGKNITNADGSIS---GVVNAIQVSSTGLTAIT 115 Q ++NST++ + KS L S IGK++ + V ++ S +G + Sbjct: 63 QLTKLNSTMEYMYYEQKSQQLMALSELIGKSVEWLNEKEKVEQATVTGVKYSESGDLLVQ 122 Query: 116 VDNTE 120 +D+ + Sbjct: 123 IDDDK 127 >gi|325288802|ref|YP_004264983.1| flagellar hook capping protein [Syntrophobotulus glycolicus DSM 8271] gi|324964203|gb|ADY54982.1| flagellar hook capping protein [Syntrophobotulus glycolicus DSM 8271] Length = 144 Score = 96.5 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 40/127 (31%), Positives = 68/127 (53%), Gaps = 9/127 (7%) Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS--- 68 + S + K LG++ FL+LL+ Q+K+QDP PM ++ V+Q+A FS +EQ + Sbjct: 18 SDTVTSTASKDLGKNDFLQLLVAQLKYQDPMSPMDNTQFVSQMAQFSALEQMTNVADAIV 77 Query: 69 TLQELLKSNNLAQASSYIGKNITNADGS-----ISGVVNAIQVSSTGLTAITVDNTEIPI 123 TL L + L Q S+ IGK GS +G VN+I++ + + VD+ + + Sbjct: 78 TLTSLYSQSLLYQGSAMIGKTAAYQAGSEGQELTTGKVNSIRIQDN-VLQVQVDDQWVDL 136 Query: 124 TTGIRIS 130 +++S Sbjct: 137 GNILQVS 143 >gi|146296287|ref|YP_001180058.1| flagellar hook capping protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409863|gb|ABP66867.1| flagellar hook capping protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 169 Score = 96.2 bits (238), Expect = 1e-18, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 63/115 (54%), Gaps = 13/115 (11%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79 TLG+ FL LL+TQ+++QDP +PM+ E VAQLA FS +EQ +N + + L Sbjct: 27 NNTLGKQEFLNLLVTQLRYQDPLKPMEDKEFVAQLAQFSALEQMQNLNESFE-------L 79 Query: 80 AQASSYIGKNI-----TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129 +A + IG+ + ++ ++ G V++I+V + + V+ E+ +I Sbjct: 80 IKAQNMIGRYVVATNPSDTSKTVEGRVDSIRVDGS-KIYLKVNGVEVTTENIKQI 133 >gi|288573022|ref|ZP_06391379.1| flagellar hook capping protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568763|gb|EFC90320.1| flagellar hook capping protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 150 Score = 96.2 bits (238), Expect = 1e-18, Method: Composition-based stats. Identities = 41/122 (33%), Positives = 65/122 (53%), Gaps = 12/122 (9%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79 K + +D FLKL I Q+K+QDP EPM +E AQ + F+ +EQ + MNS+++E+L S L Sbjct: 23 KSAMDKDDFLKLYIEQLKNQDPLEPMDTNEMAAQFSQFTTVEQLMNMNSSMEEML-SLQL 81 Query: 80 AQASSYIGKNITNA-----------DGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128 A SYIG +T + +G+V +I + + D +E I+ I Sbjct: 82 GNAVSYIGFEVTYSHAYQDDQGNQLTEEKTGIVQSISHENGSVVLKMTDGSEADISRIIS 141 Query: 129 IS 130 ++ Sbjct: 142 VA 143 >gi|154686044|ref|YP_001421205.1| flagellar basal body rod modification protein [Bacillus amyloliquefaciens FZB42] gi|154351895|gb|ABS73974.1| YlxG [Bacillus amyloliquefaciens FZB42] Length = 146 Score = 96.2 bits (238), Expect = 1e-18, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 67/116 (57%), Gaps = 4/116 (3%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78 S LG+D FLK+L+TQ+++QDP P+ E ++Q+A FS +EQ + MN+T+ + +++ + Sbjct: 27 SSTNLGKDEFLKILMTQVQNQDPLNPVDDKEFISQMATFSSLEQMMNMNTTMTKFVENQD 86 Query: 79 -LAQASSYIGKNITNAD---GSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 ++IGKN+T +D + VN+++ S+ + + E+ +S Sbjct: 87 PFTMYVNWIGKNVTFSDSDGKDQTSPVNSVKHSNGNYVLVLENGKEVSPWNVTAVS 142 >gi|90422629|ref|YP_530999.1| flagellar basal body rod modification protein [Rhodopseudomonas palustris BisB18] gi|90104643|gb|ABD86680.1| flagellar hook capping protein [Rhodopseudomonas palustris BisB18] Length = 135 Score = 96.2 bits (238), Expect = 1e-18, Method: Composition-based stats. Identities = 40/111 (36%), Positives = 64/111 (57%), Gaps = 3/111 (2%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82 +G + FL+LLI Q+++QDPT P S+ ++Q A S +EQ++Q N L LL ++ L+QA Sbjct: 25 IGYNDFLQLLIAQMRNQDPTSPTDMSQYMSQFAQLSSVEQAIQTNLKLDALLSTSALSQA 84 Query: 83 SSYIGKNI--TNADG-SISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 IG+ T DG S +G + A+ + G A + ++ + GI IS Sbjct: 85 EGLIGRTASFTAEDGQSSTGKITAVHIIQGGAVATLDNGVQVQLGPGITIS 135 >gi|319787122|ref|YP_004146597.1| flagellar hook capping protein [Pseudoxanthomonas suwonensis 11-1] gi|317465634|gb|ADV27366.1| flagellar hook capping protein [Pseudoxanthomonas suwonensis 11-1] Length = 221 Score = 96.2 bits (238), Expect = 1e-18, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 11/120 (9%) Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS---T 69 + +LGQ FL+L+ Q+KHQDP PM+ S + Q+A FS ++ +NS Sbjct: 17 ATTSKDKSDSLGQADFLRLMTEQLKHQDPLNPMENSAFLGQMAQFSTVQGIETLNSQVRA 76 Query: 70 LQELLKSNNLAQASSYIGKNI--------TNADGSISGVVNAIQVSSTGLTAITVDNTEI 121 Q L S+ L + ++ +G+++ + GS G V A S T + + Sbjct: 77 FQSALGSDQLLRGAAMVGRDVLVPSTKLALDDSGSAHGAVAAPDAGSVQFTVTDANGRTV 136 >gi|229043507|ref|ZP_04191217.1| Flagellar hook assembly protein [Bacillus cereus AH676] gi|228725885|gb|EEL77132.1| Flagellar hook assembly protein [Bacillus cereus AH676] Length = 190 Score = 96.2 bits (238), Expect = 1e-18, Method: Composition-based stats. Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 10/139 (7%) Query: 3 INTEVNPTQQ----EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58 +N +P QQ S K+ + +D FLKL + +HQDP M ++ + Q A S Sbjct: 27 VNGVQSPVQQTNGLSASNQKTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLS 86 Query: 59 QMEQSVQMN---STLQELLKSNNLAQASSYIGKNIT---NADGSISGVVNAIQVSSTGLT 112 MEQ M LQ + + L ++GK + N ++G V ++++ Sbjct: 87 LMEQVQNMTKAVDKLQSTMYTTALDGGMKFLGKYVRGINNKGEQVTGQVETVRLAENNDV 146 Query: 113 AITVDNTEIPITTGIRISN 131 + VDN + + R+S+ Sbjct: 147 QLIVDNQVVSLRFVERVSD 165 >gi|309388824|gb|ADO76704.1| flagellar hook capping protein [Halanaerobium praevalens DSM 2228] Length = 168 Score = 96.2 bits (238), Expect = 1e-18, Method: Composition-based stats. Identities = 44/124 (35%), Positives = 67/124 (54%), Gaps = 5/124 (4%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 + E + LGQDAF KLLITQ+++QDP PM+ E V+Q+A FS +E++ ++ S L Sbjct: 24 ETERKSLEGNDGLGQDAFFKLLITQLQNQDPLNPMEDREFVSQMAEFSSLEKTEKLYSLL 83 Query: 71 QELLKSNNLAQASSYIGKNIT-----NADGSISGVVNAIQVSSTGLTAITVDNTEIPITT 125 ++ L SN + S IGK IT + GVV +I+ + A + E+ I Sbjct: 84 EDKLSSNQVINNSHLIGKEITANVDEGNSTGVKGVVESIKSQGDQIFAALDNGLEVDINY 143 Query: 126 GIRI 129 +I Sbjct: 144 ITQI 147 >gi|229826309|ref|ZP_04452378.1| hypothetical protein GCWU000182_01681 [Abiotrophia defectiva ATCC 49176] gi|229789179|gb|EEP25293.1| hypothetical protein GCWU000182_01681 [Abiotrophia defectiva ATCC 49176] Length = 317 Score = 96.2 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 37/127 (29%), Positives = 66/127 (51%), Gaps = 15/127 (11%) Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 Q + LG+D+FLKLL Q+++QDP +P +E V+QLA +S +EQ +N+T+ Sbjct: 33 QNVKTADDLNKLGKDSFLKLLCAQMENQDPMQPQSNTEWVSQLATYSSLEQMQNLNATIA 92 Query: 72 ELLKSNNLAQASSYIGKNI----TNADG---SISGVVNAIQVSSTGLTAITVDNTEIPIT 124 +QA IG+ + ++DG ++SG V+ + V + +++D P + Sbjct: 93 N-------SQAYGLIGQEVVMAAKDSDGHETTVSGKVDFVSVKGN-KSYLSIDGNLYPAS 144 Query: 125 TGIRISN 131 + N Sbjct: 145 DLQSVIN 151 >gi|238924163|ref|YP_002937679.1| flagellar hook capping protein [Eubacterium rectale ATCC 33656] gi|238875838|gb|ACR75545.1| flagellar hook capping protein [Eubacterium rectale ATCC 33656] Length = 237 Score = 96.2 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 39/133 (29%), Positives = 63/133 (47%), Gaps = 8/133 (6%) Query: 5 TEVNPTQQ--EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 T PTQ S S LG D FLKLL ++++QDP EP ++ VAQ+A FSQ+E Sbjct: 15 TNTTPTQNRKTSSAKASGSNLGYDDFLKLLSAEMQYQDPLEPTSNTDYVAQMATFSQLEA 74 Query: 63 SVQMNSTLQELLKSNNLAQASSYIGKNITNAD-----GSISGVVNAIQVSSTGLTAITVD 117 ++ M ++ + A S +GK + D G SG V+ + G ++++ Sbjct: 75 TLSMKESMSSSYDQTTKSAALSLVGKEVIVTDKDSASGYYSGKVDYVT-YKDGKIQLSIN 133 Query: 118 NTEIPITTGIRIS 130 ++ +S Sbjct: 134 EKMYDYSSLYSVS 146 >gi|91204390|emb|CAJ70890.1| similar to flagellar hook assembly protein [Candidatus Kuenenia stuttgartiensis] Length = 137 Score = 95.8 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 66/122 (54%), Gaps = 11/122 (9%) Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL------- 73 + D+FL L TQ+++QDP +P SE ++QLA F+ +EQ+ Q L +L Sbjct: 11 SEITTDSFLTLFTTQMRYQDPLDPQDNSEFLSQLAQFTTLEQTSQQTEYLADLSSLDTAS 70 Query: 74 LKSNNLAQASSYIGKNITNAD----GSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129 L+ + + AS +IGK IT +D G SGVV +++ G + +D + I+ I++ Sbjct: 71 LQLDQIGIASGFIGKTITYSDDDGEGEYSGVVEGVKLEEDGTVSFVIDGESVSISNFIQV 130 Query: 130 SN 131 + Sbjct: 131 ES 132 >gi|209547951|ref|YP_002279868.1| flagellar basal body rod modification protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533707|gb|ACI53642.1| flagellar hook capping protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 147 Score = 95.8 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 55/122 (45%), Positives = 87/122 (71%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69 T + ++ K TL D FL+LLI Q+K+QDPT+P+ ASEQ++QLA FSQ+EQ++Q N+ Sbjct: 14 TTSTTNSAQQKATLNYDNFLQLLIAQMKNQDPTDPVDASEQMSQLASFSQVEQTIQTNTK 73 Query: 70 LQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129 L LL S++L QASSY+GK + +ADG++ G + +++V S G+ A T + +I + GI + Sbjct: 74 LDTLLSSSSLTQASSYVGKYMESADGTVKGTIESVKVYSDGIIATTTNGGKILVQAGITV 133 Query: 130 SN 131 ++ Sbjct: 134 AD 135 >gi|228958032|ref|ZP_04119768.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar pakistani str. T13001] gi|229189849|ref|ZP_04316860.1| Flagellar hook assembly protein [Bacillus cereus ATCC 10876] gi|228593657|gb|EEK51465.1| Flagellar hook assembly protein [Bacillus cereus ATCC 10876] gi|228801657|gb|EEM48538.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar pakistani str. T13001] Length = 190 Score = 95.8 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 10/139 (7%) Query: 3 INTEVNPTQQ----EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58 +N +P QQ S K+ + +D FLKL + +HQDP M ++ + Q A S Sbjct: 27 VNGVQSPVQQTNGVSASNQKTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLS 86 Query: 59 QMEQSVQMN---STLQELLKSNNLAQASSYIGKNIT---NADGSISGVVNAIQVSSTGLT 112 MEQ M LQ + + L ++GK + N ++G V ++++ Sbjct: 87 LMEQVQNMTKAVDKLQSTMYTTALDGGMKFLGKYVRGINNKGEQVTGQVETVRLAENNDV 146 Query: 113 AITVDNTEIPITTGIRISN 131 + VDN + + R+S+ Sbjct: 147 QLIVDNQVVSLRFVERVSD 165 >gi|114566391|ref|YP_753545.1| flagellar hook capping protein-like protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337326|gb|ABI68174.1| Flagellar hook capping protein-like protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 180 Score = 95.8 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 41/135 (30%), Positives = 74/135 (54%), Gaps = 13/135 (9%) Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67 N Q S + K L ++AFLKLL+T++K+QDP EP+K E ++Q+A FS +EQ +N Sbjct: 16 NEPQSSKSSKEINKGLDKEAFLKLLLTELKYQDPIEPVKDKEFISQMANFSSLEQMTNLN 75 Query: 68 STLQELLKSNN--------LAQASSYIGKNITNAD----GSISGVVNAIQVSSTGLTAIT 115 S+ +L + N + Q+S+ +G+ + D S +G+++++ G+ Sbjct: 76 SSFNKLSATLNSGILPGLVMQQSSTMVGREVFYTDPDSGASSNGIISSVVFRE-GIPYYV 134 Query: 116 VDNTEIPITTGIRIS 130 +D+ EI + R+ Sbjct: 135 IDDKEITMNNISRLG 149 >gi|258514009|ref|YP_003190231.1| flagellar hook capping protein [Desulfotomaculum acetoxidans DSM 771] gi|257777714|gb|ACV61608.1| flagellar hook capping protein [Desulfotomaculum acetoxidans DSM 771] Length = 134 Score = 95.8 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 42/119 (35%), Positives = 68/119 (57%), Gaps = 4/119 (3%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74 S + S L ++AFLKL I Q+K+QDP P + + Q+A FS MEQ + +N+++ +L+ Sbjct: 17 STNASGMVLDKEAFLKLFIEQLKNQDPLSPQDPNAFMNQMAQFSVMEQLMNLNTSITQLI 76 Query: 75 KSNNLAQASSYIGKN--ITNADGS-ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 NL +A+S +G+ +T ADG+ ISG V +Q+ I +D I+ +I Sbjct: 77 DLQNLTEAASLVGRTVMVTGADGTEISGTVEKVQIRQN-ANKIVIDGESYDISQIAQIG 134 >gi|220917664|ref|YP_002492968.1| flagellar hook capping protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219955518|gb|ACL65902.1| flagellar hook capping protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 225 Score = 95.4 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 13/123 (10%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 Q + + + LG+DAFLKLL TQ++HQDP PM + VAQLA FS +EQ + L Sbjct: 15 QAGQAPAPASSALGKDAFLKLLTTQLQHQDPLSPMDSQAFVAQLAQFSSVEQLGALGDKL 74 Query: 71 QELL---KSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGI 127 L S+N ++ +GK + + +++ G V +P G Sbjct: 75 DTLAMAQASSNQLGTAALVGKEVLF-------RADRVRLDPGGPARFEV---TLPADAGE 124 Query: 128 RIS 130 ++ Sbjct: 125 AVA 127 >gi|203284205|ref|YP_002221945.1| flagellar hook assembly protein [Borrelia duttonii Ly] gi|201083648|gb|ACH93239.1| flagellar hook assembly protein [Borrelia duttonii Ly] Length = 146 Score = 95.4 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 5/113 (4%) Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA 80 LG+D FLKLL+TQ+K+QDPTEPMK E ++Q+A FS +EQ M+ + + L + Sbjct: 33 SNLGRDDFLKLLLTQLKYQDPTEPMKDKEFISQMAQFSALEQMTNMSKSFENLSSILGVN 92 Query: 81 QASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 + + +GK + + I G V +++ I +D + + Sbjct: 93 KDLNLLGKIVEFENVEGKIIKGKVTSVKAGVN--PQIMIDGKYYVYNNVLSVG 143 >gi|332298238|ref|YP_004440160.1| flagellar hook capping protein [Treponema brennaborense DSM 12168] gi|332181341|gb|AEE17029.1| flagellar hook capping protein [Treponema brennaborense DSM 12168] Length = 146 Score = 95.4 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 40/114 (35%), Positives = 64/114 (56%), Gaps = 4/114 (3%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77 + + LG+D FLKLL+TQ+ +QDPT PM+ +E +AQ+A FS +EQ M+S +L Sbjct: 32 TASQQLGKDDFLKLLLTQLSNQDPTSPMENTEFIAQMAQFSSLEQMTNMSSEFTKLANML 91 Query: 78 NLAQASSYIGKNIT--NADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129 N +A S +GKN+ D ++SGVV ++ + I V+ + + Sbjct: 92 NSNEAVSLLGKNVELNAGDAAVSGVVESV--TRGAAPQIKVNGMLYSMDQINAV 143 >gi|228952132|ref|ZP_04114227.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228807664|gb|EEM54188.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 190 Score = 95.4 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 10/139 (7%) Query: 3 INTEVNPTQQ----EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58 +N +P QQ S K+ + +D FLKL + +HQDP M ++ + Q A S Sbjct: 27 VNGVQSPVQQTNGVSASNQKTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLS 86 Query: 59 QMEQSVQMN---STLQELLKSNNLAQASSYIGKNIT---NADGSISGVVNAIQVSSTGLT 112 MEQ M LQ + + L ++GK + N ++G V ++++ Sbjct: 87 LMEQVQNMTKAVDKLQSTMYTTALDGGMKFLGKYVRGINNKGEQVTGQVETVRLAENNDV 146 Query: 113 AITVDNTEIPITTGIRISN 131 + VDN + + R+S+ Sbjct: 147 QLIVDNQVVSLRFVERVSD 165 >gi|323490148|ref|ZP_08095368.1| flagellar basal body rod modification protein [Planococcus donghaensis MPA1U2] gi|323396196|gb|EGA89022.1| flagellar basal body rod modification protein [Planococcus donghaensis MPA1U2] Length = 143 Score = 95.4 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 48/139 (34%), Positives = 78/139 (56%), Gaps = 9/139 (6%) Query: 1 MEINTEVN---PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVF 57 M I+T + +K + LGQDAFLK+L+TQ+KHQDP EP+K +E + Q+A F Sbjct: 1 MNISTATSGIATASASATKEEPTNALGQDAFLKILVTQMKHQDPMEPLKDTEFIGQMAQF 60 Query: 58 SQMEQSVQMNSTLQELLK---SNNLAQASSYIGKNITNAD--GSISGVVNAIQVSSTGLT 112 + +EQ +N T+ + + S++LA + IG ++ GS G+V A+ + L Sbjct: 61 TSLEQLTNLNKTMTQFVSNQGSSSLADYAHLIGTSVKWESETGSGEGMVKALSSKNGELL 120 Query: 113 A-ITVDNTEIPITTGIRIS 130 A + +T++PI + I I Sbjct: 121 AELEGSDTKVPIASIIHIE 139 >gi|304316901|ref|YP_003852046.1| flagellar hook capping protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778403|gb|ADL68962.1| flagellar hook capping protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 135 Score = 95.4 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 70/134 (52%), Gaps = 14/134 (10%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 N+ +N + LG++ +L+LL+TQ+++QDP PM E +AQ+A FS +EQ Sbjct: 9 NSYINTYTDGTKVTNPNSELGKNEYLQLLVTQLENQDPLNPMDDKEFIAQMAQFSALEQM 68 Query: 64 VQMNSTLQELLKSNNLAQASSYIGKNIT------NADGSISGVVNAIQVSSTGLTAITVD 117 + +N++ N +A S +GK I+ + +I+G V+A++ + + V Sbjct: 69 LNLNNSF-------NAVKAYSLLGKTISANIDSNGSSSTITGKVDAVKFDGSN-YYLEVQ 120 Query: 118 NTEIPITTGIRISN 131 + + + + +S+ Sbjct: 121 GSNVSLDSVTSVSD 134 >gi|86157814|ref|YP_464599.1| flagellar hook capping protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85774325|gb|ABC81162.1| flagellar hook capping protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 225 Score = 95.4 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 3/83 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 Q + + + LG+DAFLKLL TQ++HQDP PM + VAQLA FS +EQ + L Sbjct: 15 QPGQAPAPASSALGKDAFLKLLTTQLQHQDPLSPMDSQAFVAQLAQFSSVEQLGALGDKL 74 Query: 71 QELL---KSNNLAQASSYIGKNI 90 L S+N ++ +GK + Sbjct: 75 DTLAVAQASSNQLGTAALVGKEV 97 >gi|228914331|ref|ZP_04077946.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228845325|gb|EEM90361.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 190 Score = 95.4 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 6/134 (4%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 +T S K+ + +D FLKL + +HQDP M ++ + Q A S MEQ Sbjct: 32 STAQQANGVSASTQKTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQV 91 Query: 64 VQMN---STLQELLKSNNLAQASSYIGKN---ITNADGSISGVVNAIQVSSTGLTAITVD 117 M LQ + S L ++GK ++N ++G V ++++ + VD Sbjct: 92 QNMTKAVDKLQSTMYSTALDGGMKFLGKYVRGVSNNGKQVTGQVETVRLAENNDVQLIVD 151 Query: 118 NTEIPITTGIRISN 131 N + + R+S+ Sbjct: 152 NQVVSLRFIERVSD 165 >gi|65319022|ref|ZP_00391981.1| COG1843: Flagellar hook capping protein [Bacillus anthracis str. A2012] Length = 190 Score = 95.4 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 6/134 (4%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 +T S K+ + +D FLKL + +HQDP M ++ + Q A S MEQ Sbjct: 32 STAXQANGVSASTQKTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQV 91 Query: 64 VQMN---STLQELLKSNNLAQASSYIGKN---ITNADGSISGVVNAIQVSSTGLTAITVD 117 M LQ + S L ++GK ++N ++G V ++++ + VD Sbjct: 92 QNMTKAVDKLQSTMYSTALDGGMKFLGKYVRGVSNNGKQVTGQVETVRLAENNDVQLIVD 151 Query: 118 NTEIPITTGIRISN 131 N + + R+S+ Sbjct: 152 NQVVSLRFIERVSD 165 >gi|291529035|emb|CBK94621.1| Flagellar hook capping protein [Eubacterium rectale M104/1] Length = 237 Score = 95.0 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 39/133 (29%), Positives = 63/133 (47%), Gaps = 8/133 (6%) Query: 5 TEVNPTQQ--EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 T PTQ S S LG D FLKLL ++++QDP EP ++ VAQ+A FSQ+E Sbjct: 15 TNTTPTQNRKTSSAKASGSNLGYDDFLKLLSAEMQYQDPLEPTSNTDYVAQMATFSQLEA 74 Query: 63 SVQMNSTLQELLKSNNLAQASSYIGKNITNAD-----GSISGVVNAIQVSSTGLTAITVD 117 ++ M ++ + A S +GK + D G SG V+ + G ++++ Sbjct: 75 TLSMKESMASSNDQTTKSAALSLVGKEVIVTDKDSASGYYSGKVDYVT-YKDGKIQLSIN 133 Query: 118 NTEIPITTGIRIS 130 ++ +S Sbjct: 134 EKMYDYSSLYSVS 146 >gi|30019796|ref|NP_831427.1| flagellar basal body rod modification protein [Bacillus cereus ATCC 14579] gi|229127078|ref|ZP_04256077.1| Flagellar hook assembly protein [Bacillus cereus BDRD-Cer4] gi|229144364|ref|ZP_04272770.1| Flagellar hook assembly protein [Bacillus cereus BDRD-ST24] gi|229149955|ref|ZP_04278183.1| Flagellar hook assembly protein [Bacillus cereus m1550] gi|296502352|ref|YP_003664052.1| flagellar basal body rod modification protein [Bacillus thuringiensis BMB171] gi|29895341|gb|AAP08628.1| Basal-body rod modification protein flgD [Bacillus cereus ATCC 14579] gi|228633636|gb|EEK90237.1| Flagellar hook assembly protein [Bacillus cereus m1550] gi|228639151|gb|EEK95575.1| Flagellar hook assembly protein [Bacillus cereus BDRD-ST24] gi|228656431|gb|EEL12270.1| Flagellar hook assembly protein [Bacillus cereus BDRD-Cer4] gi|296323404|gb|ADH06332.1| flagellar basal body rod modification protein [Bacillus thuringiensis BMB171] Length = 190 Score = 95.0 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 10/139 (7%) Query: 3 INTEVNPTQQ----EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58 +N +P QQ S K+ + +D FLKL + +HQDP M ++ + Q A S Sbjct: 27 VNGVQSPVQQTNGVSASNQKTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLS 86 Query: 59 QMEQSVQMN---STLQELLKSNNLAQASSYIGKNIT---NADGSISGVVNAIQVSSTGLT 112 MEQ M LQ + + L ++GK + N ++G V ++++ Sbjct: 87 LMEQVQNMTKAVDKLQSTMYTTALDGGMKFLGKYVRGINNKGEQVTGQVETVRLAENNDV 146 Query: 113 AITVDNTEIPITTGIRISN 131 + VDN + + R+S+ Sbjct: 147 QLIVDNQVVSLRFVERVSD 165 >gi|196033351|ref|ZP_03100763.1| flagellar hook capping protein [Bacillus cereus W] gi|195993785|gb|EDX57741.1| flagellar hook capping protein [Bacillus cereus W] Length = 190 Score = 95.0 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 6/134 (4%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 +T S K+ + +D FLKL + KHQDP M ++ + Q A S MEQ Sbjct: 32 STAQQANGVSASTQKTPGIMDKDDFLKLFLASFKHQDPFNAMDMNQMMNQTAQLSLMEQV 91 Query: 64 VQMN---STLQELLKSNNLAQASSYIGKN---ITNADGSISGVVNAIQVSSTGLTAITVD 117 M LQ + S L ++GK ++N ++G V ++++ + VD Sbjct: 92 NNMTKAVDKLQSTMYSTALDGGMKFLGKYVRGVSNNGKQVTGQVETVRLAENNDVQLIVD 151 Query: 118 NTEIPITTGIRISN 131 N + + R+S+ Sbjct: 152 NQVVSLRFIERVSD 165 >gi|268316349|ref|YP_003290068.1| flagellar hook capping protein [Rhodothermus marinus DSM 4252] gi|262333883|gb|ACY47680.1| flagellar hook capping protein [Rhodothermus marinus DSM 4252] Length = 230 Score = 94.6 bits (234), Expect = 4e-18, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 7/95 (7%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 + + + L ++AFL+LL+TQ+++QDP P+ + E AQLA FS +EQ + +N TL Sbjct: 18 STPSAPAPPSQELDKEAFLRLLVTQLRYQDPINPLDSREFAAQLAQFSTVEQLIGINETL 77 Query: 71 QELLKSNNLAQ-------ASSYIGKNITNADGSIS 98 + A+ +GK I ++ Sbjct: 78 AAQSDAYAALAQGIHNSVAAGLVGKVIEAEGDRLT 112 >gi|308173590|ref|YP_003920295.1| flagellar hook assembly protein [Bacillus amyloliquefaciens DSM 7] gi|307606454|emb|CBI42825.1| flagellar hook assembly protein [Bacillus amyloliquefaciens DSM 7] gi|328553478|gb|AEB23970.1| flagellar basal body rod modification protein [Bacillus amyloliquefaciens TA208] gi|328911731|gb|AEB63327.1| flagellar hook assembly protein [Bacillus amyloliquefaciens LL3] Length = 143 Score = 94.6 bits (234), Expect = 4e-18, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 70/126 (55%), Gaps = 4/126 (3%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 + + + S LG+D FLK+L+TQ+++QDP P+ E ++Q+A FS +EQ + +N+ Sbjct: 14 SSTKSTAAVNSSTNLGKDEFLKILMTQVQNQDPLNPVDDKEFISQMATFSSLEQMMNLNT 73 Query: 69 TLQELLKSNN-LAQASSYIGKNITNAD---GSISGVVNAIQVSSTGLTAITVDNTEIPIT 124 T+ + +++ + ++IGK++T +D + VN+++ S+ + + E+ Sbjct: 74 TMTKYVENQDPFTMYVNWIGKSVTFSDSDGKDQTSPVNSVKHSNGNYMLVLENGKEVSPW 133 Query: 125 TGIRIS 130 +S Sbjct: 134 NVTAVS 139 >gi|165869506|ref|ZP_02214165.1| flagellar hook assembly protein family protein [Bacillus anthracis str. A0488] gi|227815487|ref|YP_002815496.1| flagellar hook assembly protein family protein [Bacillus anthracis str. CDC 684] gi|254755248|ref|ZP_05207282.1| flagellar basal body rod modification protein [Bacillus anthracis str. Vollum] gi|164714946|gb|EDR20464.1| flagellar hook assembly protein family protein [Bacillus anthracis str. A0488] gi|227007323|gb|ACP17066.1| flagellar hook assembly protein family protein [Bacillus anthracis str. CDC 684] Length = 198 Score = 94.6 bits (234), Expect = 4e-18, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 6/134 (4%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 +T S K+ + +D FLKL + +HQDP M ++ + Q A S MEQ Sbjct: 32 STAQQANGVSASTQKTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQV 91 Query: 64 VQMN---STLQELLKSNNLAQASSYIGKN---ITNADGSISGVVNAIQVSSTGLTAITVD 117 M LQ + S L ++GK ++N ++G V ++++ + VD Sbjct: 92 QNMTKAVDKLQSTMYSTALDGGMKFLGKYVRGVSNNGKQVTGQVETVRLAENNDVQLIVD 151 Query: 118 NTEIPITTGIRISN 131 N + + R+S+ Sbjct: 152 NQVVSLRFIERVSD 165 >gi|296126536|ref|YP_003633788.1| flagellar hook capping protein [Brachyspira murdochii DSM 12563] gi|296018352|gb|ADG71589.1| flagellar hook capping protein [Brachyspira murdochii DSM 12563] Length = 263 Score = 94.6 bits (234), Expect = 4e-18, Method: Composition-based stats. Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 3/108 (2%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 Q F + ++ +LG+DAFLKLL Q+ HQDP PM + +AQLA FS +EQ ++N L Sbjct: 27 QNNFQRDPTQNSLGKDAFLKLLTVQMSHQDPLSPMDNRDMIAQLAQFSSVEQMTEVNKNL 86 Query: 71 QELLKSNNLAQASSYIGKNIT---NADGSISGVVNAIQVSSTGLTAIT 115 + + S +GK++ A G V + + TG+ Sbjct: 87 DSMKTFYSSQTGYSMLGKSVEVMDEAGNRFLGPVEMVMENDTGVALAV 134 >gi|30261750|ref|NP_844127.1| flagellar basal body rod modification protein [Bacillus anthracis str. Ames] gi|47526974|ref|YP_018323.1| flagellar basal body rod modification protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49184582|ref|YP_027834.1| flagellar basal body rod modification protein [Bacillus anthracis str. Sterne] gi|49477316|ref|YP_035872.1| flagellar basal body rod modification protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|167633353|ref|ZP_02391678.1| flagellar hook assembly protein family protein [Bacillus anthracis str. A0442] gi|167639172|ref|ZP_02397445.1| flagellar hook assembly protein family protein [Bacillus anthracis str. A0193] gi|170686321|ref|ZP_02877543.1| flagellar hook assembly protein family protein [Bacillus anthracis str. A0465] gi|170706446|ref|ZP_02896906.1| flagellar hook assembly protein family protein [Bacillus anthracis str. A0389] gi|177650541|ref|ZP_02933508.1| flagellar hook assembly protein family protein [Bacillus anthracis str. A0174] gi|190566416|ref|ZP_03019334.1| flagellar hook assembly protein family protein [Bacillus anthracis Tsiankovskii-I] gi|196045133|ref|ZP_03112366.1| flagellar hook assembly protein family protein [Bacillus cereus 03BB108] gi|218902867|ref|YP_002450701.1| flagellar hook assembly protein family protein [Bacillus cereus AH820] gi|228933036|ref|ZP_04095899.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228984837|ref|ZP_04145008.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229090714|ref|ZP_04221947.1| Flagellar hook assembly protein [Bacillus cereus Rock3-42] gi|229155323|ref|ZP_04283434.1| Flagellar hook assembly protein [Bacillus cereus ATCC 4342] gi|229600498|ref|YP_002866148.1| flagellar hook assembly protein family protein [Bacillus anthracis str. A0248] gi|254683243|ref|ZP_05147104.1| flagellar basal body rod modification protein [Bacillus anthracis str. CNEVA-9066] gi|254723829|ref|ZP_05185615.1| flagellar basal body rod modification protein [Bacillus anthracis str. A1055] gi|254734596|ref|ZP_05192308.1| flagellar basal body rod modification protein [Bacillus anthracis str. Western North America USA6153] gi|254741005|ref|ZP_05198693.1| flagellar basal body rod modification protein [Bacillus anthracis str. Kruger B] gi|254759784|ref|ZP_05211808.1| flagellar basal body rod modification protein [Bacillus anthracis str. Australia 94] gi|300117327|ref|ZP_07055117.1| flagellar basal body rod modification protein [Bacillus cereus SJ1] gi|301053290|ref|YP_003791501.1| flagellar hook assembly protein [Bacillus anthracis CI] gi|30255978|gb|AAP25613.1| flagellar hook assembly protein family protein [Bacillus anthracis str. Ames] gi|47502122|gb|AAT30798.1| flagellar hook assembly protein family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49178509|gb|AAT53885.1| flagellar hook assembly protein family protein [Bacillus anthracis str. Sterne] gi|49328872|gb|AAT59518.1| basal-body rod modification protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|167512962|gb|EDR88335.1| flagellar hook assembly protein family protein [Bacillus anthracis str. A0193] gi|167531391|gb|EDR94069.1| flagellar hook assembly protein family protein [Bacillus anthracis str. A0442] gi|170128544|gb|EDS97411.1| flagellar hook assembly protein family protein [Bacillus anthracis str. A0389] gi|170670018|gb|EDT20759.1| flagellar hook assembly protein family protein [Bacillus anthracis str. A0465] gi|172083685|gb|EDT68745.1| flagellar hook assembly protein family protein [Bacillus anthracis str. A0174] gi|190562551|gb|EDV16518.1| flagellar hook assembly protein family protein [Bacillus anthracis Tsiankovskii-I] gi|196024135|gb|EDX62809.1| flagellar hook assembly protein family protein [Bacillus cereus 03BB108] gi|218537170|gb|ACK89568.1| flagellar hook assembly protein family protein [Bacillus cereus AH820] gi|228628248|gb|EEK84964.1| Flagellar hook assembly protein [Bacillus cereus ATCC 4342] gi|228692656|gb|EEL46382.1| Flagellar hook assembly protein [Bacillus cereus Rock3-42] gi|228774889|gb|EEM23284.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228826637|gb|EEM72408.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229264906|gb|ACQ46543.1| flagellar hook assembly protein family protein [Bacillus anthracis str. A0248] gi|298725162|gb|EFI65814.1| flagellar basal body rod modification protein [Bacillus cereus SJ1] gi|300375459|gb|ADK04363.1| flagellar hook assembly protein [Bacillus cereus biovar anthracis str. CI] Length = 190 Score = 94.6 bits (234), Expect = 4e-18, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 6/134 (4%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 +T S K+ + +D FLKL + +HQDP M ++ + Q A S MEQ Sbjct: 32 STAQQANGVSASTQKTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQV 91 Query: 64 VQMN---STLQELLKSNNLAQASSYIGKN---ITNADGSISGVVNAIQVSSTGLTAITVD 117 M LQ + S L ++GK ++N ++G V ++++ + VD Sbjct: 92 QNMTKAVDKLQSTMYSTALDGGMKFLGKYVRGVSNNGKQVTGQVETVRLAENNDVQLIVD 151 Query: 118 NTEIPITTGIRISN 131 N + + R+S+ Sbjct: 152 NQVVSLRFIERVSD 165 >gi|291524894|emb|CBK90481.1| Flagellar hook capping protein [Eubacterium rectale DSM 17629] Length = 237 Score = 94.6 bits (234), Expect = 4e-18, Method: Composition-based stats. Identities = 39/133 (29%), Positives = 63/133 (47%), Gaps = 8/133 (6%) Query: 5 TEVNPTQQ--EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 T PTQ S S LG D FLKLL ++++QDP EP ++ VAQ+A FSQ+E Sbjct: 15 TNTTPTQNRKTSSAKASGSNLGYDDFLKLLSAEMQYQDPLEPTSNTDYVAQMATFSQLEA 74 Query: 63 SVQMNSTLQELLKSNNLAQASSYIGKNITNAD-----GSISGVVNAIQVSSTGLTAITVD 117 ++ M ++ + A S +GK + D G SG V+ + G ++++ Sbjct: 75 TLSMKESMASSNDQTTKSAALSLVGKEVIVTDKDSASGYYSGKVDYVT-YKDGKIQLSIN 133 Query: 118 NTEIPITTGIRIS 130 ++ +S Sbjct: 134 EKMYDYSSLYSVS 146 >gi|146277709|ref|YP_001167868.1| flagellar hook capping protein [Rhodobacter sphaeroides ATCC 17025] gi|145555950|gb|ABP70563.1| flagellar hook capping protein [Rhodobacter sphaeroides ATCC 17025] Length = 225 Score = 94.6 bits (234), Expect = 4e-18, Method: Composition-based stats. Identities = 33/82 (40%), Positives = 52/82 (63%), Gaps = 3/82 (3%) Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 + +++K LGQ+ FLKLL TQ+++QDP +PM+ E +AQ+A FS + Q+N TL Sbjct: 18 KTATQAKGSSNLGQEDFLKLLTTQLQNQDPFQPMENGEFLAQMAQFSTVSGIEQLNGTLS 77 Query: 72 EL---LKSNNLAQASSYIGKNI 90 + L S A A+S IG+++ Sbjct: 78 GIGEGLGSFRTATAASLIGRSV 99 >gi|197122872|ref|YP_002134823.1| flagellar hook capping protein [Anaeromyxobacter sp. K] gi|196172721|gb|ACG73694.1| flagellar hook capping protein [Anaeromyxobacter sp. K] Length = 225 Score = 94.6 bits (234), Expect = 4e-18, Method: Composition-based stats. Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 13/123 (10%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 Q + + + LG+DAFLKLL TQ++HQDP PM + VAQLA FS +EQ + L Sbjct: 15 QAGQAPAPASSALGKDAFLKLLTTQLQHQDPLSPMDSQAFVAQLAQFSSVEQLGALGDKL 74 Query: 71 QELL---KSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGI 127 L S+N ++ +GK + + +++ G V +P G Sbjct: 75 DTLAMAQASSNQLGTAALVGKEVLF-------RADRVRLDPGGPARFEV---TLPAEAGE 124 Query: 128 RIS 130 ++ Sbjct: 125 AVA 127 >gi|52143705|ref|YP_083123.1| flagellar basal body rod modification protein [Bacillus cereus E33L] gi|228945355|ref|ZP_04107710.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|51977174|gb|AAU18724.1| basal-body rod modification protein [Bacillus cereus E33L] gi|228814327|gb|EEM60593.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 190 Score = 94.6 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 6/134 (4%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 +T S K+ + +D FLKL + +HQDP M ++ + Q A S MEQ Sbjct: 32 STAQQANGVSASTQKTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQV 91 Query: 64 VQMN---STLQELLKSNNLAQASSYIGKN---ITNADGSISGVVNAIQVSSTGLTAITVD 117 M LQ + S L ++GK ++N ++G V ++++ + VD Sbjct: 92 QNMTKAVDKLQSTMYSTALDGGMKFLGKYVRGVSNNGKQVTGQVETVRLAENNDVQLIVD 151 Query: 118 NTEIPITTGIRISN 131 N + + R+S+ Sbjct: 152 NQVVSLRFIERVSD 165 >gi|152965623|ref|YP_001361407.1| flagellar hook capping protein [Kineococcus radiotolerans SRS30216] gi|151360140|gb|ABS03143.1| flagellar hook capping protein [Kineococcus radiotolerans SRS30216] Length = 175 Score = 94.2 bits (233), Expect = 5e-18, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 70/134 (52%), Gaps = 9/134 (6%) Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65 N T S + +K +D FLKLL+ Q+K+QDP++P ++ +AQ A FS +E + Sbjct: 30 NANKTDTSASAAVAKTKTDKDTFLKLLVAQLKYQDPSKPADTTQFMAQTAQFSALETMQE 89 Query: 66 MNSTLQELLKSNNLAQASSYIGKNI--TNADGSI-SGVVNAIQVS------STGLTAITV 116 + ++ +L + N QAS+ IG+ + T DG+ SGVV + + + G + V Sbjct: 90 VAASSGSMLAAQNKLQASTLIGQIVSYTGEDGTAKSGVVKSASFTQGSAGGTNGEPVLNV 149 Query: 117 DNTEIPITTGIRIS 130 D T + ++ I Sbjct: 150 DGTSVVLSRVSGIG 163 >gi|212639560|ref|YP_002316080.1| flagellar basal body rod modification protein [Anoxybacillus flavithermus WK1] gi|212561040|gb|ACJ34095.1| Flagellar hook capping protein [Anoxybacillus flavithermus WK1] Length = 163 Score = 94.2 bits (233), Expect = 5e-18, Method: Composition-based stats. Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 26/144 (18%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 +Q + K +LG+D FLK+LI Q++HQDP PM+ E ++Q+A FS +EQ V M++ L Sbjct: 21 RQVAQRETGKSSLGKDDFLKILIAQLQHQDPLNPMEDREFISQMANFSSLEQMVNMSNML 80 Query: 71 QELLKSN------------------------NLAQASSYIGKNITNADGSISGVVNAIQV 106 + +++ +LAQ S +IGK +T + SGVV A+ Sbjct: 81 SKFIETQTGTSEKLVGTLDALQKLIQQQSAPSLAQYSEWIGKTVTWDEQ--SGVVRAVVQ 138 Query: 107 SSTGLTAITVDNTEIPITTGIRIS 130 T + + + ++S Sbjct: 139 KGTDIWLELEQGETVLASRVTKVS 162 >gi|220929461|ref|YP_002506370.1| flagellar hook capping protein [Clostridium cellulolyticum H10] gi|219999789|gb|ACL76390.1| flagellar hook capping protein [Clostridium cellulolyticum H10] Length = 285 Score = 94.2 bits (233), Expect = 5e-18, Method: Composition-based stats. Identities = 36/112 (32%), Positives = 61/112 (54%), Gaps = 15/112 (13%) Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65 E ++QE + K+ LG++ FL LL+TQ+++QDP +P+ E +AQ+A FS +EQ Sbjct: 18 ESTKSKQEAAARKTGGELGKNDFLNLLVTQLRYQDPLQPVDDKEFIAQMAQFSSLEQMQN 77 Query: 66 MNSTLQELLKSNNLAQASSYIGKNITNAD--------GSISGVVNAIQVSST 109 MN ++ + +QA + IGK IT S+ G V ++++ Sbjct: 78 MNGSMTK-------SQAFNLIGKVITATTTDDKTLEVNSVQGTVTSVKMKEG 122 >gi|303326941|ref|ZP_07357383.1| basal-body rod modification protein FlgD [Desulfovibrio sp. 3_1_syn3] gi|302862929|gb|EFL85861.1| basal-body rod modification protein FlgD [Desulfovibrio sp. 3_1_syn3] Length = 282 Score = 94.2 bits (233), Expect = 6e-18, Method: Composition-based stats. Identities = 38/101 (37%), Positives = 64/101 (63%), Gaps = 6/101 (5%) Query: 3 INTEVNPTQQEFSKSKSKK---TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59 I +N T EF+ + SK+ + +D+F+ LL+TQ K+QDP PM+ E +AQLA FS Sbjct: 4 ITQALNQTNNEFNSALSKQKGSNMDKDSFMLLLVTQFKYQDPLNPMEDKEFIAQLAQFSS 63 Query: 60 MEQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 +EQ + +N++++ L + + A+SYIGKN++ + +I Sbjct: 64 LEQLMNLNTSMEGLTDATNNQQMINATSYIGKNVSVSGNAI 104 >gi|217976245|ref|YP_002360392.1| flagellar basal body rod modification protein [Methylocella silvestris BL2] gi|217501621|gb|ACK49030.1| flagellar hook capping protein [Methylocella silvestris BL2] Length = 135 Score = 93.8 bits (232), Expect = 6e-18, Method: Composition-based stats. Identities = 50/133 (37%), Positives = 79/133 (59%), Gaps = 8/133 (6%) Query: 2 EINTEVNPT---QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58 +N+ N T + + + T+ + FL+LLIT++K+QDPT P ++ ++QLA FS Sbjct: 5 NVNSVANATGTSANASTSAATSATVDYNQFLQLLITELKNQDPTSPTDPTQYMSQLASFS 64 Query: 59 QMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTG-LTAITVD 117 +EQ V+ NS L LL QA + IGK T+ADG ISGV+ ++ S+ G +TA + Sbjct: 65 SVEQQVKTNSALDALL----ATQAGALIGKTATSADGKISGVIASVTTSAGGDVTATLKN 120 Query: 118 NTEIPITTGIRIS 130 + I + +G+ IS Sbjct: 121 GSAITLGSGVTIS 133 >gi|218885351|ref|YP_002434672.1| flagellar hook capping protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756305|gb|ACL07204.1| flagellar hook capping protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 263 Score = 93.8 bits (232), Expect = 6e-18, Method: Composition-based stats. Identities = 42/124 (33%), Positives = 61/124 (49%), Gaps = 8/124 (6%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 L + AFL LL+ Q+ HQDP PM E VAQLA F+ +EQ +++ + Sbjct: 15 NNYLGAKTKNDELDKQAFLNLLVAQLSHQDPLNPMDDKEFVAQLAQFTSLEQLTNISTGI 74 Query: 71 QELLKS---NNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGI 127 +L S ++ A YIGK +T + IS Q STG T +V + + TT Sbjct: 75 TDLNASAKQQQMSAAVGYIGKEVTASGYEIS---KTSQKDSTGATVNSV--STVYFTTQE 129 Query: 128 RISN 131 ++SN Sbjct: 130 QVSN 133 >gi|194365681|ref|YP_002028291.1| flagellar basal body rod modification protein [Stenotrophomonas maltophilia R551-3] gi|194348485|gb|ACF51608.1| flagellar hook capping protein [Stenotrophomonas maltophilia R551-3] Length = 227 Score = 93.8 bits (232), Expect = 6e-18, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 58/113 (51%), Gaps = 11/113 (9%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 ++ + + + +K K TL Q FL+L+ Q++HQDP +PM ++ VAQ+A S ++ Sbjct: 12 DVYSALGLNAPNSNATKKKNTLDQADFLRLMTEQLQHQDPLKPMDNTQMVAQMAQMSTVQ 71 Query: 62 QSVQMNST---LQELLKSNNLAQASSYIGKN--------ITNADGSISGVVNA 103 +N T QE + S+ + + ++ +G + +G++ G V A Sbjct: 72 GITDLNKTVKGFQESMASDQVLRGAALVGHEVLVPSEKLVLEKEGTVEGTVAA 124 >gi|332799180|ref|YP_004460679.1| flagellar hook capping protein [Tepidanaerobacter sp. Re1] gi|332696915|gb|AEE91372.1| flagellar hook capping protein [Tepidanaerobacter sp. Re1] Length = 128 Score = 93.8 bits (232), Expect = 7e-18, Method: Composition-based stats. Identities = 42/132 (31%), Positives = 61/132 (46%), Gaps = 13/132 (9%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 INT+ T + K + L +D FLKLL+TQ+++QDP EPM +E +AQLA FS +EQ Sbjct: 4 INTDYYYTANQEQKLGTTN-LDKDDFLKLLVTQLRYQDPLEPMDNNEYIAQLAQFSSLEQ 62 Query: 63 SVQMNSTLQELLKSNNLAQASSYIGKNITN--ADGSISGVVNAIQVSSTGLTAITVDNT- 119 +N + L A S IGK + G + I + I + Sbjct: 63 MQNLNIQMASL-------SAISTIGKTAKAVVEQNEVEGTIKGIAFDRGSVNLIISNEDS 115 Query: 120 --EIPITTGIRI 129 ++PI I Sbjct: 116 EVKVPIENVAEI 127 >gi|196039031|ref|ZP_03106338.1| flagellar hook capping protein [Bacillus cereus NVH0597-99] gi|228926788|ref|ZP_04089856.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229121304|ref|ZP_04250535.1| Flagellar hook assembly protein [Bacillus cereus 95/8201] gi|196030176|gb|EDX68776.1| flagellar hook capping protein [Bacillus cereus NVH0597-99] gi|228662149|gb|EEL17758.1| Flagellar hook assembly protein [Bacillus cereus 95/8201] gi|228832901|gb|EEM78470.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 190 Score = 93.8 bits (232), Expect = 8e-18, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 59/134 (44%), Gaps = 6/134 (4%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 +T + K+ + +D FLKL + +HQDP M ++ + Q A S MEQ Sbjct: 32 STAQQANGVSANTQKTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQV 91 Query: 64 VQMN---STLQELLKSNNLAQASSYIGKN---ITNADGSISGVVNAIQVSSTGLTAITVD 117 M LQ + S L ++GK ++N ++G V ++++ + VD Sbjct: 92 QNMTKAVDKLQSTMYSTALDGGMKFLGKYVRGVSNNGKQVTGQVETVRLAENNDVQLIVD 151 Query: 118 NTEIPITTGIRISN 131 N + + R+S+ Sbjct: 152 NQVVSLRFIERVSD 165 >gi|118477188|ref|YP_894339.1| flagellar basal body rod modification protein [Bacillus thuringiensis str. Al Hakam] gi|225863611|ref|YP_002748989.1| flagellar hook assembly protein family protein [Bacillus cereus 03BB102] gi|229183944|ref|ZP_04311160.1| Flagellar hook assembly protein [Bacillus cereus BGSC 6E1] gi|118416413|gb|ABK84832.1| basal-body rod modification protein [Bacillus thuringiensis str. Al Hakam] gi|225788388|gb|ACO28605.1| flagellar hook assembly protein family protein [Bacillus cereus 03BB102] gi|228599596|gb|EEK57200.1| Flagellar hook assembly protein [Bacillus cereus BGSC 6E1] Length = 190 Score = 93.5 bits (231), Expect = 9e-18, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 6/134 (4%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 +T S K+ + +D FLKL + +HQDP M ++ + Q A S MEQ Sbjct: 32 STAQQANGVSASTQKTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQV 91 Query: 64 VQMN---STLQELLKSNNLAQASSYIGKN---ITNADGSISGVVNAIQVSSTGLTAITVD 117 M LQ + S L ++GK ++N ++G V ++++ + VD Sbjct: 92 QNMTKAVDKLQSTMYSTALDGGMKFLGKYVRGVSNNGKQVTGQVETVRLAENNDVQLIVD 151 Query: 118 NTEIPITTGIRISN 131 N + + R+S+ Sbjct: 152 NQVVSLRFIERVSD 165 >gi|90415319|ref|ZP_01223253.1| flagellar basal body rod modification protein [marine gamma proteobacterium HTCC2207] gi|90332642|gb|EAS47812.1| flagellar basal body rod modification protein [marine gamma proteobacterium HTCC2207] Length = 228 Score = 93.5 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 52/92 (56%), Gaps = 3/92 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 ++E + + + LGQDAFL L Q+++Q+P +PM V+QLA FS +E M +L Sbjct: 18 EKENAVAYGEDELGQDAFLTLFTAQLQNQNPLDPMDNEAFVSQLAEFSSLEGIKGMQGSL 77 Query: 71 QEL---LKSNNLAQASSYIGKNITNADGSISG 99 + ++ + + ++ +GK + A G+ +G Sbjct: 78 DNMVNGMRQDQMVAGANLVGKKVQVAGGNFTG 109 >gi|332981438|ref|YP_004462879.1| flagellar hook capping protein [Mahella australiensis 50-1 BON] gi|332699116|gb|AEE96057.1| flagellar hook capping protein [Mahella australiensis 50-1 BON] Length = 143 Score = 93.5 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 16/139 (11%) Query: 1 MEINT-EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59 M +N+ + Q + L QD FLKLL Q+++Q+P +PM +AQ+A FS Sbjct: 1 MYVNSINTMSSAQASTVINKSAKLRQDDFLKLLAAQMQNQNPLDPMDDKAFIAQMAQFSS 60 Query: 60 MEQSVQMNSTLQELLKSNNLAQASSYIGKNI-------TNADGSISGVVNAIQVSSTGLT 112 +EQ M++ L ++AQA + IGK + ISG V++++ S G Sbjct: 61 LEQMQNMSANL-------SMAQAVAMIGKEVYATIPTERGVQQQISGTVDSVKF-SNGQA 112 Query: 113 AITVDNTEIPITTGIRISN 131 +TV ++P+ + + Sbjct: 113 ILTVGAVDVPLENVTEVRD 131 >gi|94267502|ref|ZP_01290901.1| Flagellar hook capping protein [delta proteobacterium MLMS-1] gi|93451979|gb|EAT02689.1| Flagellar hook capping protein [delta proteobacterium MLMS-1] Length = 223 Score = 93.5 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 38/106 (35%), Positives = 58/106 (54%), Gaps = 8/106 (7%) Query: 1 MEINTEVNPTQQEFSKSK-----SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55 M I++ + P + +L + F+KL ITQ+++QDP +PM + E +QLA Sbjct: 1 MAIDSMMGPGVPMAEPAGAIKPVGSDSLDRADFMKLFITQLQYQDPMQPMDSYEMASQLA 60 Query: 56 VFSQMEQSVQMNSTLQELL---KSNNLAQASSYIGKNITNADGSIS 98 FS ME +++M+ +++LL KS N Q IGKNI A IS Sbjct: 61 QFSNMEATMKMSDNMEKLLDYQKSQNNLQLLGLIGKNIETAGNEIS 106 >gi|94264100|ref|ZP_01287899.1| Flagellar hook capping protein [delta proteobacterium MLMS-1] gi|93455516|gb|EAT05706.1| Flagellar hook capping protein [delta proteobacterium MLMS-1] Length = 223 Score = 93.1 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 40/106 (37%), Positives = 59/106 (55%), Gaps = 8/106 (7%) Query: 1 MEINTEVNP-----TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55 M I++ + P +K +L + F+KL ITQ+++QDP EPM + E +QLA Sbjct: 1 MAIDSMMGPGVPMAEPPNPNKPVGSDSLDRADFMKLFITQLQYQDPMEPMDSYEMASQLA 60 Query: 56 VFSQMEQSVQMNSTLQELL---KSNNLAQASSYIGKNITNADGSIS 98 FS ME +++M+ +++LL KS N Q IGKNI A IS Sbjct: 61 QFSNMEATMKMSDNMEKLLDYQKSQNNLQLLGLIGKNIETAGNEIS 106 >gi|317154734|ref|YP_004122782.1| flagellar hook capping protein [Desulfovibrio aespoeensis Aspo-2] gi|316944985|gb|ADU64036.1| flagellar hook capping protein [Desulfovibrio aespoeensis Aspo-2] Length = 247 Score = 93.1 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 36/89 (40%), Positives = 53/89 (59%), Gaps = 3/89 (3%) Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72 + SK +LGQ FL LL+ Q+ HQDP PM+ ++ +QLA FS +EQ ++N +Q Sbjct: 20 ASNTPTSKASLGQADFLTLLVAQLTHQDPLNPMQDTDMTSQLAQFSSLEQLTKINDGVQS 79 Query: 73 L---LKSNNLAQASSYIGKNITNADGSIS 98 L + ++L A+SYIGK+I IS Sbjct: 80 LNTVMGKSDLLSAASYIGKDIKAEGYKIS 108 >gi|291280097|ref|YP_003496932.1| flagellar basal-body rod modification protein FlgD [Deferribacter desulfuricans SSM1] gi|290754799|dbj|BAI81176.1| flagellar basal-body rod modification protein FlgD [Deferribacter desulfuricans SSM1] Length = 221 Score = 93.1 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 40/133 (30%), Positives = 60/133 (45%), Gaps = 13/133 (9%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 N + + + KK L +D FL LL+TQ+K+QDP P+ SE +AQ FS +EQ Sbjct: 7 NINTVTSISNINNREPKKELDKDDFLNLLVTQLKNQDPLNPLDNSEFIAQTTQFSSLEQL 66 Query: 64 VQMNSTLQELL-----KSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDN 118 + ++ +L+ + NL A S+I K I S + + D Sbjct: 67 INISEKFDKLIDNEESSNLNLFSAVSFIDKTINFYGNDFS--------ADENGALLRFDI 118 Query: 119 TEIPITTGIRISN 131 + P TT I I N Sbjct: 119 SGTPATTNIEIYN 131 >gi|326204619|ref|ZP_08194475.1| flagellar hook capping protein [Clostridium papyrosolvens DSM 2782] gi|325985186|gb|EGD46026.1| flagellar hook capping protein [Clostridium papyrosolvens DSM 2782] Length = 286 Score = 92.7 bits (229), Expect = 1e-17, Method: Composition-based stats. Identities = 34/110 (30%), Positives = 58/110 (52%), Gaps = 15/110 (13%) Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67 +Q + K+ LG++ FL LL+TQ+++QDP +P+ E +AQ+A FS +EQ MN Sbjct: 20 TKNKQAAAARKTGGELGKNDFLNLLVTQLRYQDPLQPVDDKEFIAQMAQFSSLEQMQNMN 79 Query: 68 STLQELLKSNNLAQASSYIGKNITNAD--------GSISGVVNAIQVSST 109 ++ + +QA + IGK IT S+ G V ++++ Sbjct: 80 GSMTK-------SQAFTLIGKVITATTTDDKTLEVNSVQGTVTSVKMKDG 122 >gi|190574264|ref|YP_001972109.1| flagellar basal body rod modification protein [Stenotrophomonas maltophilia K279a] gi|190012186|emb|CAQ45809.1| putative basal-body rod modification protein [Stenotrophomonas maltophilia K279a] Length = 227 Score = 92.7 bits (229), Expect = 1e-17, Method: Composition-based stats. Identities = 31/113 (27%), Positives = 58/113 (51%), Gaps = 11/113 (9%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 ++ T + + +K K TL Q FL+L+ Q++HQDP +PM ++ VAQ+A S ++ Sbjct: 12 DVYTALGLNAPNSNATKKKNTLDQADFLRLMTEQLQHQDPLKPMDNTQMVAQMAQMSTVQ 71 Query: 62 QSVQMNST---LQELLKSNNLAQASSYIGKN--------ITNADGSISGVVNA 103 +N T QE + S+ + + ++ +G + +G++ G V A Sbjct: 72 GITDLNKTVKGFQESMASDQVLRGAALVGHQVLVPSEKLVLEKEGNVEGTVAA 124 >gi|311030123|ref|ZP_07708213.1| hypothetical protein Bm3-1_06191 [Bacillus sp. m3-13] Length = 217 Score = 92.7 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 66/140 (47%), Gaps = 13/140 (9%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 I++++ + S +G+D FL+LLI Q+++QDP PM+ E +AQ+A FS +EQ Sbjct: 5 ISSDLYIQNRPVETSNQNNVMGKDDFLRLLIAQLQNQDPLNPMEDREFIAQMANFSSLEQ 64 Query: 63 SVQMNSTLQELLKSNNLAQASSY---IGKNITNADGSI----------SGVVNAIQVSST 109 +N +++ + + N S +G +T + +G V +I + Sbjct: 65 MANLNKSMEGFIDTQNKMNVLSLQQYLGSELTWQHTYMVEDEPFVEMKNGTVASISMQDG 124 Query: 110 GLTAITVDNTEIPITTGIRI 129 I D +EI + ++ Sbjct: 125 KARLIMDDGSEITVEQITKV 144 >gi|310641550|ref|YP_003946308.1| flagellar hook capping protein [Paenibacillus polymyxa SC2] gi|309246500|gb|ADO56067.1| Flagellar hook capping protein [Paenibacillus polymyxa SC2] Length = 177 Score = 92.7 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 42/143 (29%), Positives = 73/143 (51%), Gaps = 17/143 (11%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 + N + + +K KT+G+D FLK+LITQ+++QDP +P++ E +AQ+A FS +E Sbjct: 12 NVWPNYNVNNVKTASAKDTKTMGKDQFLKILITQLQNQDPMQPLEDKEFIAQMAQFSSVE 71 Query: 62 QSVQMNSTLQELLKSNNLAQASSYIGKNI--------------TNADGSISGVVNAIQVS 107 Q + +++ L L +L AS IGK + T A SG+V++I + Sbjct: 72 QLMNISTQLNAL--GQSLGTASGLIGKEVSWIEPGKKDSITGETGAGTVKSGIVDSIVIR 129 Query: 108 STGLTAITVDNTEIPITTGIRIS 130 G+ + E+ + +S Sbjct: 130 -DGVQYAKMGAAEVALKDVTSVS 151 >gi|251797438|ref|YP_003012169.1| flagellar hook capping protein [Paenibacillus sp. JDR-2] gi|247545064|gb|ACT02083.1| flagellar hook capping protein [Paenibacillus sp. JDR-2] Length = 182 Score = 92.7 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 9/134 (6%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 + K K LG+DAFL+LL+TQ+K+QDP +P + + Q+A F+ +EQ + Sbjct: 12 NYSTSNVKAAGKDTDKNALGKDAFLELLVTQLKNQDPLQPQDNAAFITQMAQFTSVEQLM 71 Query: 65 QMNSTLQELLKSNNLAQASSYIGKNITNADGSISGV-------VNAIQVSSTGLTAITVD 117 M+ L L + NL ASS IGK ++ + +G VN+I L A D Sbjct: 72 NMSDQLSLL--NQNLGTASSIIGKTVSWYELDDAGQTKLMYDAVNSIVSQDGTLYAKFAD 129 Query: 118 NTEIPITTGIRISN 131 T I ++ + +S+ Sbjct: 130 ETMIKLSDVVTVSD 143 >gi|239815262|ref|YP_002944172.1| flagellar hook capping protein [Variovorax paradoxus S110] gi|239801839|gb|ACS18906.1| flagellar hook capping protein [Variovorax paradoxus S110] Length = 133 Score = 92.7 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 32/111 (28%), Positives = 62/111 (55%), Gaps = 2/111 (1%) Query: 7 VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66 ++ + + +LG + FLK+L+TQ+ +QDP +PM E +AQ+A F+ +EQ+ Q+ Sbjct: 3 IDAISGSTATNLQASSLGMEDFLKILLTQLTYQDPLKPMDNQEFMAQMAQFTSLEQTQQL 62 Query: 67 NSTLQELLKSNNLAQASSYIGKN--ITNADGSISGVVNAIQVSSTGLTAIT 115 N+ ++ L+ + Q+ IGK + G+++G V+A+ +S Sbjct: 63 NNKIETLITNQAALQSVGLIGKTVDVNTPTGAVTGTVSALSLSGDAPLLTV 113 >gi|160901598|ref|YP_001567179.1| flagellar hook capping protein [Petrotoga mobilis SJ95] gi|160359242|gb|ABX30856.1| flagellar hook capping protein [Petrotoga mobilis SJ95] Length = 220 Score = 92.7 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 39/120 (32%), Positives = 66/120 (55%), Gaps = 6/120 (5%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 + +++ T + KK L ++AFL+LL+T++++QDPT+PM+ + VAQL+ S Sbjct: 5 VSMDSIYQSTYDAKKDREIKKELDKEAFLELLVTELQNQDPTQPMENKDLVAQLSQLSST 64 Query: 61 EQSVQMNSTLQELLKSN---NLAQASSYIGKNITNADGSI---SGVVNAIQVSSTGLTAI 114 EQ M+ +QE++ S N QA+S IGK + D +I SGV + + + Sbjct: 65 EQITNMSQAIQEMVNSQMSLNKLQAASLIGKTVVVNDNTIDLQSGVAEGLNYGLDNGSQV 124 >gi|254460266|ref|ZP_05073682.1| flagellar scaffolding protein FlgD [Rhodobacterales bacterium HTCC2083] gi|206676855|gb|EDZ41342.1| flagellar scaffolding protein FlgD [Rhodobacteraceae bacterium HTCC2083] Length = 230 Score = 92.3 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 11/109 (10%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 +++ + + +K+ LGQD FLKL+ Q+++QDP PM + +AQ+A FS + Sbjct: 16 SKLGISTTDAKPEDAKEELGQDDFLKLMTAQLQNQDPFAPMDNGDFIAQMAQFSSVAGIS 75 Query: 65 QMNSTLQEL---LKSNNLAQASSYIGKNITNAD--------GSISGVVN 102 M TL + L + + + +G ++ G + GV++ Sbjct: 76 DMGKTLNTIADQLGQFRVGSSVNMLGHSVLLPGNIARADDKGEVHGVLD 124 >gi|221636049|ref|YP_002523925.1| flagellar hook capping protein [Thermomicrobium roseum DSM 5159] gi|221158205|gb|ACM07323.1| flagellar hook capping protein [Thermomicrobium roseum DSM 5159] Length = 146 Score = 92.3 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 4/112 (3%) Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ 81 L + AFL LL+ Q+K+QDP PM+ E +AQLA + +EQ Q+N T+ + + L Q Sbjct: 24 QLDKQAFLMLLVAQLKNQDPMNPMQDREFIAQLAQLNTLEQLQQLNETVAAMAQHAALGQ 83 Query: 82 ASSYIGKNITNADGS----ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129 + Y+G+ ++ D + ++G V + I + + I Sbjct: 84 VAGYLGRVVSGLDRTSGDLVTGTVVRATILDGAAVLELSGGQRIDVRDVVSI 135 >gi|149202209|ref|ZP_01879182.1| Flagellar scaffolding protein FlgD [Roseovarius sp. TM1035] gi|149144307|gb|EDM32338.1| Flagellar scaffolding protein FlgD [Roseovarius sp. TM1035] Length = 225 Score = 92.3 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 7/106 (6%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---L 74 LGQ FL L+ Q+++QDP PM+ E +AQ+A FS + ++N+TL ++ + Sbjct: 27 TGNGDLGQQDFLALMTAQLQNQDPFAPMENGEFLAQMAQFSTVAGLDRVNTTLSDIGSQI 86 Query: 75 KSNNLAQASSYIGKNITNADG----SISGVVNAIQVSSTGLTAITV 116 N +A ASS +G+ + SG V+ + +A+TV Sbjct: 87 GGNRIATASSLLGQQVLVPGSLARPDASGGVHGVADLPEAASAVTV 132 >gi|68164547|gb|AAY87276.1| predicted flagellar hook capping protein [uncultured bacterium BAC17H8] Length = 231 Score = 92.3 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 68/119 (57%), Gaps = 13/119 (10%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 ++E + SK TLGQ FLKL+ TQ+++QDP PM+ +E +AQ+A FS + +M + L Sbjct: 23 KKEDTARGSKDTLGQSDFLKLMTTQLQNQDPFAPMENAEFIAQMAQFSTVTGITEMGTEL 82 Query: 71 QEL---LKSNNLAQASSYIGKNI--------TNADGSISGVVNAIQVSSTGLTAITVDN 118 + + L +A A++ +G ++ + +G I G++ S++G+T +T N Sbjct: 83 KAIAEQLGEFRIATAANLLGSSVMVPGNYARADDNGEIHGMIE--LPSASGITNLTFSN 139 >gi|251772437|gb|EES53004.1| flagellar hook capping protein [Leptospirillum ferrodiazotrophum] Length = 278 Score = 92.3 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 3/78 (3%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75 KK LG + ++ ++I Q+++QDP PM + +QLA FSQ++Q V MN ++ + Sbjct: 27 PPPQKKKLGMEDYMNIMIRQLQYQDPFHPMDNRKFASQLAQFSQLDQLVHMNKKMEGMAN 86 Query: 76 S---NNLAQASSYIGKNI 90 + Q ++G+ + Sbjct: 87 QGRETDALQMVGFLGREV 104 >gi|308068659|ref|YP_003870264.1| flagellar hook capping protein [Paenibacillus polymyxa E681] gi|305857938|gb|ADM69726.1| Flagellar hook capping protein [Paenibacillus polymyxa E681] Length = 177 Score = 92.3 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 42/143 (29%), Positives = 73/143 (51%), Gaps = 17/143 (11%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 + N + + +K KT+G+D FLK+LITQ+++QDP +P++ E +AQ+A FS +E Sbjct: 12 NVWPNYNVNNVKTASAKDTKTMGKDQFLKILITQLQNQDPMQPLEDKEFIAQMAQFSSVE 71 Query: 62 QSVQMNSTLQELLKSNNLAQASSYIGKNI--------------TNADGSISGVVNAIQVS 107 Q + +++ L L +L AS IGK + T A SG+V++I + Sbjct: 72 QLMNISTQLNAL--GQSLGTASGLIGKEVSWIEAGKKDSITGETGAGAVKSGIVDSIVIR 129 Query: 108 STGLTAITVDNTEIPITTGIRIS 130 G+ + E+ + +S Sbjct: 130 -DGVQYAKMGAAEVALKDVTSVS 151 >gi|289208113|ref|YP_003460179.1| flagellar hook capping protein [Thioalkalivibrio sp. K90mix] gi|288943744|gb|ADC71443.1| flagellar hook capping protein [Thioalkalivibrio sp. K90mix] Length = 223 Score = 91.9 bits (227), Expect = 2e-17, Method: Composition-based stats. Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 11/96 (11%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS- 76 LGQ FLKL+ TQ+++QDP EPM+ E + Q+A FS + +++ + ++L +S Sbjct: 22 GPADRLGQSDFLKLMTTQLQNQDPFEPMENGEFIGQMAQFSTVTGIEELSKSFEKLAQSM 81 Query: 77 --NNLAQASSYIGKNI--------TNADGSISGVVN 102 + QA+S +GK++ DG + G V Sbjct: 82 GQSQTLQAASLVGKDVLVPTDFSELGTDGMVRGAVE 117 >gi|182412239|ref|YP_001817305.1| flagellar hook capping protein [Opitutus terrae PB90-1] gi|177839453|gb|ACB73705.1| flagellar hook capping protein [Opitutus terrae PB90-1] Length = 155 Score = 91.9 bits (227), Expect = 2e-17, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 67/119 (56%), Gaps = 4/119 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 + + K TL Q+ FLKLL Q + QDP PM+ +E +AQ+A F+ ++QS + + + Sbjct: 21 SGTNTPAPKKTTLDQNDFLKLLTVQFQQQDPMSPMEDTEFIAQMAQFTALDQSKALLTQM 80 Query: 71 QELLKSNNLAQASSYIGKNITNADG---SISGVVNAIQVSSTGLTAITVDNTEIPITTG 126 ++ + A A+SYIG+ +T AD + +GVV+ ++++ G + V + ++ Sbjct: 81 KQFSTMQDAATANSYIGRQVTFADENGATATGVVSGVEIT-DGAPRLVVGDLTYALSAV 138 >gi|77463653|ref|YP_353157.1| flagellar scaffolding protein FlgD [Rhodobacter sphaeroides 2.4.1] gi|221639496|ref|YP_002525758.1| Flagellar scaffolding protein FlgD [Rhodobacter sphaeroides KD131] gi|77388071|gb|ABA79256.1| Flagellar scaffolding protein FlgD [Rhodobacter sphaeroides 2.4.1] gi|221160277|gb|ACM01257.1| Flagellar scaffolding protein FlgD [Rhodobacter sphaeroides KD131] Length = 223 Score = 91.9 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 39/112 (34%), Positives = 60/112 (53%), Gaps = 7/112 (6%) Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 Q +++K K LGQ FL LL TQ+++QDP +PM+ E +AQ+A FS + Q+NSTL Sbjct: 16 QTSTQAKGKSNLGQQDFLTLLTTQLQNQDPFQPMENGEFLAQMAQFSTVSGIEQLNSTLT 75 Query: 72 EL---LKSNNLAQASSYIGKNITNADGSI----SGVVNAIQVSSTGLTAITV 116 + L + A A+S IGK++ + +G V + A+ V Sbjct: 76 GIGDGLGAFRTATAASLIGKSVLVPGTLVRADGTGTVRGAVTLTDPAEALVV 127 >gi|126462485|ref|YP_001043599.1| flagellar hook capping protein [Rhodobacter sphaeroides ATCC 17029] gi|126104149|gb|ABN76827.1| flagellar hook capping protein [Rhodobacter sphaeroides ATCC 17029] Length = 223 Score = 91.9 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 39/112 (34%), Positives = 60/112 (53%), Gaps = 7/112 (6%) Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 Q +++K K LGQ FL LL TQ+++QDP +PM+ E +AQ+A FS + Q+NSTL Sbjct: 16 QTSTQAKGKSNLGQQDFLTLLTTQLQNQDPFQPMENGEFLAQMAQFSTVSGIEQLNSTLT 75 Query: 72 EL---LKSNNLAQASSYIGKNITNADGSI----SGVVNAIQVSSTGLTAITV 116 + L + A A+S IGK++ + +G V + A+ V Sbjct: 76 GIGDGLGAFRTATAASLIGKSVLVPGTLVRADGTGTVRGAVTLTDPAEALVV 127 >gi|304310786|ref|YP_003810384.1| Flagellar basal-body rod modification protein FlgD [gamma proteobacterium HdN1] gi|301796519|emb|CBL44727.1| Flagellar basal-body rod modification protein FlgD [gamma proteobacterium HdN1] Length = 237 Score = 91.5 bits (226), Expect = 3e-17, Method: Composition-based stats. Identities = 35/132 (26%), Positives = 69/132 (52%), Gaps = 13/132 (9%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST- 69 + S KS +D F++L++ Q+KHQ+P +P +E VAQLA FS +E +N + Sbjct: 29 DNKASPQKSAAATDKDMFMQLMLAQLKHQNPLDPQDGTEFVAQLAQFSSLEGITNLNDSV 88 Query: 70 --LQELLKSNNLAQASSYIGKNITNADGSIS--------GVVNAIQVSSTGLTAITVDNT 119 + + +S+ QA++ +G+ + S++ GV+NA Q +S + T+ ++ Sbjct: 89 KDITSMYRSSQTLQATALVGREVLVDGDSVAFDGKNAALGVINAGQAASNAVM--TIKDS 146 Query: 120 EIPITTGIRISN 131 + + + I + Sbjct: 147 KGAVVNSMTIGD 158 >gi|298345997|ref|YP_003718684.1| flagellar hook capping protein [Mobiluncus curtisii ATCC 43063] gi|304390245|ref|ZP_07372199.1| flagellar hook assembly protein FlgD [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315657510|ref|ZP_07910392.1| flagellar hook assembly protein FlgD [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298236058|gb|ADI67190.1| flagellar hook capping protein [Mobiluncus curtisii ATCC 43063] gi|304326727|gb|EFL93971.1| flagellar hook assembly protein FlgD [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315491982|gb|EFU81591.1| flagellar hook assembly protein FlgD [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 254 Score = 91.5 bits (226), Expect = 3e-17, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 68/130 (52%), Gaps = 7/130 (5%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 T + ++ LG+D F+KLL+ +K+QDPTEPM ++ + Q + + MEQ +QM Sbjct: 56 KTDKAAQTKENPGKLGKDDFMKLLLATLKYQDPTEPMDTAKLLEQTSTMTNMEQMIQMTE 115 Query: 69 TLQELLKSNNLAQASSYIGKN-----ITNADGSIS--GVVNAIQVSSTGLTAITVDNTEI 121 ++ ++ AQ ++ +GK + +++ G ++A++ + G + ++ Sbjct: 116 ASKKSFEAQQRAQGTTMVGKTAVYDAVDAQGNAVTTAGKIDAVEFLADGKVLAHIGKEKV 175 Query: 122 PITTGIRISN 131 ++ + I++ Sbjct: 176 EMSDILGIAD 185 >gi|94500240|ref|ZP_01306773.1| Flagellar hook capping protein [Oceanobacter sp. RED65] gi|94427539|gb|EAT12516.1| Flagellar hook capping protein [Oceanobacter sp. RED65] Length = 262 Score = 91.5 bits (226), Expect = 3e-17, Method: Composition-based stats. Identities = 31/80 (38%), Positives = 51/80 (63%), Gaps = 3/80 (3%) Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77 LG++ FLKLL+TQ+ +Q+P +P + SE VAQLA FS +E +N+T+ + L+S+ Sbjct: 28 NELGRNEFLKLLVTQMNNQNPLKPQENSEFVAQLAQFSSVEGLENLNTTVDSMSDGLRSS 87 Query: 78 NLAQASSYIGKNITNADGSI 97 QASS +G+++ + Sbjct: 88 QALQASSLVGQSVIVPNQEY 107 >gi|254522227|ref|ZP_05134282.1| flagellar protein [Stenotrophomonas sp. SKA14] gi|219719818|gb|EED38343.1| flagellar protein [Stenotrophomonas sp. SKA14] Length = 227 Score = 91.5 bits (226), Expect = 3e-17, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 63/137 (45%), Gaps = 11/137 (8%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 ++ + + +K K TL Q FL+L+ Q++HQDP +PM ++ VAQ+A S ++ Sbjct: 12 DVYAALGLNAPNSNATKKKNTLDQADFLRLMTEQLQHQDPLKPMDNTQMVAQMAQMSTVQ 71 Query: 62 QSVQMNST---LQELLKSNNLAQASSYIGKNI--------TNADGSISGVVNAIQVSSTG 110 +N T QE + S+ + + ++ +G + +GS+ G V A Sbjct: 72 GITDLNKTVKGFQESMASDQVLRGAALVGHQVLVPSEKLMLEKEGSVEGTVAAPSAGIIT 131 Query: 111 LTAITVDNTEIPITTGI 127 + + T++ + Sbjct: 132 VDITDANGTKVTSLSVE 148 >gi|327441048|dbj|BAK17413.1| flagellar hook capping protein [Solibacillus silvestris StLB046] Length = 231 Score = 91.5 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 34/139 (24%), Positives = 61/139 (43%), Gaps = 16/139 (11%) Query: 7 VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66 N + + + LG+DAFLK+LITQ+++QDPT PM E ++Q+A FS +EQ M Sbjct: 13 ANNPNFKVTDKQDNGALGKDAFLKILITQLQNQDPTSPMDDKEFISQMAQFSSLEQMQNM 72 Query: 67 NSTLQE---LLKSNNLAQASSYIGKNITNAD-------------GSISGVVNAIQVSSTG 110 ++ + + L ++++GK + + G + ++ + Sbjct: 73 TKAMENLLQSQQQSQLMSYTTFVGKEVKWHEITDKVDADNKPIYNEGIGTIQELKFVNGE 132 Query: 111 LTAITVDNTEIPITTGIRI 129 + D EI I Sbjct: 133 AVFVLADGKEIKPGNISSI 151 >gi|83647174|ref|YP_435609.1| flagellar hook capping protein [Hahella chejuensis KCTC 2396] gi|83635217|gb|ABC31184.1| Flagellar hook capping protein [Hahella chejuensis KCTC 2396] Length = 225 Score = 91.1 bits (225), Expect = 4e-17, Method: Composition-based stats. Identities = 34/110 (30%), Positives = 59/110 (53%), Gaps = 11/110 (10%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 + ++ + + K LG++ F+ L+I Q+ +Q P +P + VAQLA FS +E Sbjct: 11 SDALSQYALQQKSANRKNELGKNEFMDLMIAQLNNQSPLDPQDNTAFVAQLAQFSSVEGI 70 Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNI--------TNADGSISGVVN 102 +NST+ + +S QAS+ +G+++ +ADGSI+GVV Sbjct: 71 QSLNSTVDTMASQFRSAQALQASAMVGRDVLAPMESAIKSADGSINGVVE 120 >gi|229544400|ref|ZP_04433458.1| flagellar hook capping protein [Bacillus coagulans 36D1] gi|229324885|gb|EEN90562.1| flagellar hook capping protein [Bacillus coagulans 36D1] Length = 215 Score = 91.1 bits (225), Expect = 4e-17, Method: Composition-based stats. Identities = 38/134 (28%), Positives = 68/134 (50%), Gaps = 14/134 (10%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 ++ + ++ S KTL +DAFLK+LI Q+++QDPT+PM ++ V+Q+A FS + Sbjct: 7 IDPSLLLSNQNTATSTRTGSKTLDKDAFLKILIAQLQNQDPTKPMDDTQFVSQMAQFSSL 66 Query: 61 EQSVQMNSTLQELLKSNNLAQ---ASSYIGKNI------TNADGSI-----SGVVNAIQV 106 EQ + + + L+K + +Q + YIG+ + T DG+ +G + I Sbjct: 67 EQMTNLKNDIDNLIKLSQQSQQIAYTQYIGRTVSWEKTETADDGTASVKSGTGTITGISF 126 Query: 107 SSTGLTAITVDNTE 120 T+D+ Sbjct: 127 GDDNAVTFTLDDGT 140 >gi|332558509|ref|ZP_08412831.1| Flagellar scaffolding protein FlgD [Rhodobacter sphaeroides WS8N] gi|6502602|gb|AAF14369.1|AF133240_3 flagellar scaffolding protein FlgD [Rhodobacter sphaeroides] gi|332276221|gb|EGJ21536.1| Flagellar scaffolding protein FlgD [Rhodobacter sphaeroides WS8N] Length = 223 Score = 91.1 bits (225), Expect = 4e-17, Method: Composition-based stats. Identities = 39/112 (34%), Positives = 60/112 (53%), Gaps = 7/112 (6%) Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 Q +++K K LGQ FL LL TQ+++QDP +PM+ E +AQ+A FS + Q+NSTL Sbjct: 16 QTSTQAKGKSNLGQQDFLTLLTTQLQNQDPFQPMENGEFLAQMAQFSTVSGIEQLNSTLT 75 Query: 72 EL---LKSNNLAQASSYIGKNITNADGSI----SGVVNAIQVSSTGLTAITV 116 + L + A A+S IGK++ + +G V + A+ V Sbjct: 76 GIGDGLGAFRTATAASLIGKSVLVPGTLVRADGTGTVRGAVTLTDPAEALVV 127 >gi|323700160|ref|ZP_08112072.1| flagellar hook capping protein [Desulfovibrio sp. ND132] gi|323460092|gb|EGB15957.1| flagellar hook capping protein [Desulfovibrio desulfuricans ND132] Length = 250 Score = 91.1 bits (225), Expect = 5e-17, Method: Composition-based stats. Identities = 33/89 (37%), Positives = 53/89 (59%), Gaps = 3/89 (3%) Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---ST 69 + ++ + +L QDAFL +L+ Q+ HQDP PM+ +E +QLA FS +EQ +N ST Sbjct: 21 SNTPTEHETSLDQDAFLSILVAQLTHQDPLNPMEDTEMTSQLAEFSSLEQLTNINDGIST 80 Query: 70 LQELLKSNNLAQASSYIGKNITNADGSIS 98 L E + +++ A S+IGK + +S Sbjct: 81 LNETMSQSDILTAVSFIGKEVKAEGYKVS 109 >gi|49082024|gb|AAT50412.1| PA1079 [synthetic construct] Length = 238 Score = 91.1 bits (225), Expect = 5e-17, Method: Composition-based stats. Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 3/86 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 + K LG+D FLKLL+ Q+K+QDP P + E +AQLA FS +E +N ++ Sbjct: 28 TETGQSVKGSSNLGKDEFLKLLVAQLKNQDPMSPQQNGEFIAQLAQFSTVEGVQSLNKSM 87 Query: 71 QELL---KSNNLAQASSYIGKNITNA 93 + +L +S+ QASS +G+ + A Sbjct: 88 ESILSNYQSSQALQASSLVGRKVIVA 113 >gi|315654585|ref|ZP_07907491.1| flagellar hook assembly protein FlgD [Mobiluncus curtisii ATCC 51333] gi|315491049|gb|EFU80668.1| flagellar hook assembly protein FlgD [Mobiluncus curtisii ATCC 51333] Length = 254 Score = 91.1 bits (225), Expect = 5e-17, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 68/130 (52%), Gaps = 7/130 (5%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 T + ++ LG+D F+KLL+ +K+QDPTEPM ++ + Q + + MEQ +QM Sbjct: 56 KTDKAAETKENPGKLGKDDFMKLLLATLKYQDPTEPMDTAKLLEQTSTMTNMEQMIQMTE 115 Query: 69 TLQELLKSNNLAQASSYIGKN-----ITNADGSIS--GVVNAIQVSSTGLTAITVDNTEI 121 ++ ++ AQ ++ +GK + +++ G ++A++ + G + ++ Sbjct: 116 ASKKSFEAQQRAQGTTMVGKTAVYDAVDAQGNAVTTAGKIDAVEFLADGKVLAHIGKEKV 175 Query: 122 PITTGIRISN 131 ++ + I++ Sbjct: 176 EMSDILGIAD 185 >gi|146307870|ref|YP_001188335.1| flagellar basal body rod modification protein [Pseudomonas mendocina ymp] gi|145576071|gb|ABP85603.1| flagellar hook capping protein [Pseudomonas mendocina ymp] Length = 221 Score = 90.8 bits (224), Expect = 5e-17, Method: Composition-based stats. Identities = 37/124 (29%), Positives = 66/124 (53%), Gaps = 9/124 (7%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL- 74 ++ K LG++ FL LL+ Q+ +Q+P EP E +AQLA FS +E ++N +++ +L Sbjct: 19 NTRQNKDLGKNEFLNLLVAQLNNQNPLEPQGNGEFIAQLAQFSSLEGIEKLNKSMESMLS 78 Query: 75 --KSNNLAQASSYIGKNITNA------DGSISGVVNAIQVSSTGLTAITVDNTEIPITTG 126 +S+ QASS +G+ + D S S +A+ S+G + V ++ + T Sbjct: 79 SYQSSQALQASSLVGRKVIVPTERAVVDTSESFKASAVLPVSSGNVYVNVYDSAGSVVTR 138 Query: 127 IRIS 130 I + Sbjct: 139 INLG 142 >gi|301168106|emb|CBW27692.1| putative basal-body rod modification protein [Bacteriovorax marinus SJ] Length = 281 Score = 90.8 bits (224), Expect = 6e-17, Method: Composition-based stats. Identities = 36/90 (40%), Positives = 53/90 (58%), Gaps = 3/90 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 Q+F +K LG+D FLKLL Q+ +QDP +PM + A LA FSQ+EQ MN+ + Sbjct: 43 DQKFVDAKEHNKLGKDGFLKLLSHQMANQDPMKPMDQKQFAADLAQFSQLEQLTNMNTKM 102 Query: 71 QELLKSN---NLAQASSYIGKNITNADGSI 97 + K++ N A+S+IGK I + S+ Sbjct: 103 DGMQKNDTTENKFMAASFIGKEIMSKGTSV 132 >gi|332703534|ref|ZP_08423622.1| flagellar hook capping protein [Desulfovibrio africanus str. Walvis Bay] gi|332553683|gb|EGJ50727.1| flagellar hook capping protein [Desulfovibrio africanus str. Walvis Bay] Length = 236 Score = 90.8 bits (224), Expect = 6e-17, Method: Composition-based stats. Identities = 37/108 (34%), Positives = 55/108 (50%), Gaps = 4/108 (3%) Query: 2 EINTEVNPTQQEFSKSKSKK-TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 I + S KSK L Q FL LL+ Q++HQDP PM+ + AQLA FS + Sbjct: 6 NITGSSSAIDPYASTPKSKSGALDQSTFLNLLMAQLQHQDPLNPMEDKDFTAQLAQFSSL 65 Query: 61 EQSVQMNSTLQELLKS---NNLAQASSYIGKNITNADGSISGVVNAIQ 105 EQ ++N ++ L S ++ A S+IGK+I ++S +I Sbjct: 66 EQLNKINEGIEGLNSSAGRQDMLGAVSFIGKDIRAFGNTVSKEGTSIT 113 >gi|95929856|ref|ZP_01312597.1| flagellar hook capping protein [Desulfuromonas acetoxidans DSM 684] gi|95134152|gb|EAT15810.1| flagellar hook capping protein [Desulfuromonas acetoxidans DSM 684] Length = 222 Score = 90.4 bits (223), Expect = 7e-17, Method: Composition-based stats. Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 3/106 (2%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 N + Q + S LG+ FL L++ Q+K+QDP P A+E AQLA FS +EQ Sbjct: 9 NAASSNAQLSSALSSGANALGKQDFLTLMVEQLKNQDPMNPSDATEFTAQLAQFSSLEQL 68 Query: 64 VQMNSTLQELLKSN---NLAQASSYIGKNITNADGSISGVVNAIQV 106 +N L+ + ++ A + IG ++ A A+Q Sbjct: 69 FNVNDNLESMGNTSAEVQRLSALALIGTDVVTASSEFEFSGGAVQF 114 >gi|237799205|ref|ZP_04587666.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|237806224|ref|ZP_04592928.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022060|gb|EGI02117.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331027337|gb|EGI07392.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 229 Score = 90.4 bits (223), Expect = 8e-17, Method: Composition-based stats. Identities = 39/99 (39%), Positives = 61/99 (61%), Gaps = 6/99 (6%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 +NT NPT + + S TLG+D+FL+LL+TQ+K+Q+P +P ++ VAQLA FS +E Sbjct: 16 LNTLQNPTP---TATNSTGTLGKDSFLQLLVTQMKNQNPLDPQDNTQFVAQLAQFSSLES 72 Query: 63 SVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSIS 98 + T+ + KS+ QASS +G+++ GS S Sbjct: 73 MQNLTKTVDTIAGSYKSSQALQASSLVGRSVIIDSGSTS 111 >gi|326791536|ref|YP_004309357.1| flagellar hook capping protein [Clostridium lentocellum DSM 5427] gi|326542300|gb|ADZ84159.1| flagellar hook capping protein [Clostridium lentocellum DSM 5427] Length = 270 Score = 90.4 bits (223), Expect = 8e-17, Method: Composition-based stats. Identities = 33/115 (28%), Positives = 64/115 (55%), Gaps = 2/115 (1%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77 K + L +DAF+ LL+TQ+K+QDP +P+ SE +AQLA F+ +EQ + + Q+ L + Sbjct: 23 KEQSELDKDAFINLLVTQMKYQDPLDPVDNSEMLAQLAQFTALEQMMNVAQASQKQLANG 82 Query: 78 NLAQASSYIGKNI-TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 + + Y+ K+ T + G V+ ++VS + + + E+ + ++ + Sbjct: 83 MIGKYVEYLYKDSETGTSEYLVGKVDYVKVSGD-TPVLGIGDVEVNLEDVYQVYD 136 >gi|154250213|ref|YP_001411038.1| flagellar hook capping protein [Fervidobacterium nodosum Rt17-B1] gi|154154149|gb|ABS61381.1| flagellar hook capping protein [Fervidobacterium nodosum Rt17-B1] Length = 218 Score = 90.4 bits (223), Expect = 8e-17, Method: Composition-based stats. Identities = 42/134 (31%), Positives = 67/134 (50%), Gaps = 12/134 (8%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 M +N+ ++ + +KK L ++AFLKLLITQ+K QDP EPMK + +AQ++ S + Sbjct: 3 MNVNS-MSNLFSTSTDRTTKKDLDKEAFLKLLITQLKSQDPLEPMKDRDFIAQMSQLSSL 61 Query: 61 EQSVQMNSTLQELLKSNNLA---QASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVD 117 EQ + M+ ++Q + + QA S IGK I+ G+ V Sbjct: 62 EQVMNMSKSVQSFVDTAAQLYRTQAVSMIGKTAVVKTNVIN--------VENGVPESKVF 113 Query: 118 NTEIPITTGIRISN 131 N + P I+I + Sbjct: 114 NLDSPANIVIKIFD 127 >gi|152989628|ref|YP_001349651.1| flagellar basal body rod modification protein [Pseudomonas aeruginosa PA7] gi|150964786|gb|ABR86811.1| flagellar basal-body rod modification protein FlgD [Pseudomonas aeruginosa PA7] Length = 227 Score = 90.4 bits (223), Expect = 8e-17, Method: Composition-based stats. Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 3/86 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 + K LG+D FLKLL+ Q+K+QDP P + E +AQLA FS +E +N ++ Sbjct: 18 TETGQSVKGSSNLGKDEFLKLLVAQLKNQDPMSPQQNGEFIAQLAQFSTVEGVQSLNKSM 77 Query: 71 QELL---KSNNLAQASSYIGKNITNA 93 + +L +S+ QASS +G+ + A Sbjct: 78 ESILSNYQSSQALQASSLVGRKVIVA 103 >gi|307823530|ref|ZP_07653759.1| flagellar hook capping protein [Methylobacter tundripaludum SV96] gi|307735515|gb|EFO06363.1| flagellar hook capping protein [Methylobacter tundripaludum SV96] Length = 231 Score = 90.4 bits (223), Expect = 9e-17, Method: Composition-based stats. Identities = 34/126 (26%), Positives = 64/126 (50%), Gaps = 11/126 (8%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 + + T+ + + + K +LGQD FLKL+ TQ+ HQDPT+PM+ + + Q+A F + Sbjct: 9 DYSYLTATTKNDSAATTKKTSLGQDDFLKLMTTQMTHQDPTKPMENGQFITQIAQFGTVS 68 Query: 62 QSVQMNSTLQEL---LKSNNLAQASSYIGKNIT--------NADGSISGVVNAIQVSSTG 110 + + + + S+ QA+S +G+ ++ A G I+G +N + + Sbjct: 69 GIQDLQKSFGDFAGSINSSQALQATSLVGRYVSAPGTKGVLEAGGDITGNINLTASAPSV 128 Query: 111 LTAITV 116 A+T Sbjct: 129 KVAVTD 134 >gi|206889592|ref|YP_002248122.1| flagellar hook capping protein [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741530|gb|ACI20587.1| flagellar hook capping protein [Thermodesulfovibrio yellowstonii DSM 11347] Length = 137 Score = 90.0 bits (222), Expect = 9e-17, Method: Composition-based stats. Identities = 40/102 (39%), Positives = 60/102 (58%), Gaps = 7/102 (6%) Query: 2 EINTEVNP---TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58 ++ T N T QE + + + ++AFLKLL Q+K+QDP PM +E V QLA+FS Sbjct: 3 DVTTIFNNPLYTVQEKTTATGNSQIDKEAFLKLLTAQLKYQDPLNPMDNTEFVGQLAMFS 62 Query: 59 QMEQSVQMNSTLQELLKSNNLAQA----SSYIGKNITNADGS 96 +EQ + +N+TL++L S + A S+ IGK I DG+ Sbjct: 63 ALEQVININNTLEQLANSQVYSNALMIGSTIIGKTIVTTDGT 104 >gi|124516304|gb|EAY57812.1| probable flagellar hook capping protein FlgD [Leptospirillum rubarum] Length = 276 Score = 90.0 bits (222), Expect = 9e-17, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 57/119 (47%), Gaps = 10/119 (8%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75 ++ LG FL L+I+Q+++QDP P+ + AQLA FSQ++Q +N + + Sbjct: 26 APPPRQKLGMGDFLHLMISQLQYQDPLHPLNNTRFAAQLAQFSQLDQLTHLNRGVGTIAH 85 Query: 76 SN---NLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 N ++G+ +T NA +++ +G ++T T + +RI + Sbjct: 86 DGADANKMMMVGFLGQRVTMKG-------NAFRLAPSGNVSLTYRQTGASQSGHLRIFD 137 >gi|15596276|ref|NP_249770.1| flagellar basal body rod modification protein [Pseudomonas aeruginosa PAO1] gi|107100524|ref|ZP_01364442.1| hypothetical protein PaerPA_01001549 [Pseudomonas aeruginosa PACS2] gi|218892957|ref|YP_002441826.1| flagellar basal body rod modification protein [Pseudomonas aeruginosa LESB58] gi|254234215|ref|ZP_04927538.1| flagellar basal-body rod modification protein FlgD [Pseudomonas aeruginosa C3719] gi|254239437|ref|ZP_04932759.1| flagellar basal-body rod modification protein FlgD [Pseudomonas aeruginosa 2192] gi|313106034|ref|ZP_07792293.1| flagellar basal-body rod modification protein FlgD [Pseudomonas aeruginosa 39016] gi|9946995|gb|AAG04468.1|AE004539_10 flagellar basal-body rod modification protein FlgD [Pseudomonas aeruginosa PAO1] gi|126166146|gb|EAZ51657.1| flagellar basal-body rod modification protein FlgD [Pseudomonas aeruginosa C3719] gi|126192815|gb|EAZ56878.1| flagellar basal-body rod modification protein FlgD [Pseudomonas aeruginosa 2192] gi|218773185|emb|CAW28997.1| flagellar basal-body rod modification protein FlgD [Pseudomonas aeruginosa LESB58] gi|310878795|gb|EFQ37389.1| flagellar basal-body rod modification protein FlgD [Pseudomonas aeruginosa 39016] Length = 237 Score = 90.0 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 3/86 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 + K LG+D FLKLL+ Q+K+QDP P + E +AQLA FS +E +N ++ Sbjct: 28 TETGQSVKGSSNLGKDEFLKLLVAQLKNQDPMSPQQNGEFIAQLAQFSTVEGVQSLNKSM 87 Query: 71 QELL---KSNNLAQASSYIGKNITNA 93 + +L +S+ QASS +G+ + A Sbjct: 88 ESILSNYQSSQALQASSLVGRKVIVA 113 >gi|291334311|gb|ADD93972.1| predicted flagellar hook capping protein [uncultured marine bacterium MedDCM-OCT-S09-C247] Length = 230 Score = 90.0 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 52/89 (58%), Gaps = 3/89 (3%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69 T+Q ++ +K TLGQ FLKL+ TQ+++QDP PM + +AQ+A FS + ++N++ Sbjct: 20 TRQAGTQKAAKDTLGQSDFLKLMTTQLQNQDPFAPMDNGDFIAQMAQFSTVTGIQEVNNS 79 Query: 70 LQEL---LKSNNLAQASSYIGKNITNADG 95 + +L +A AS+ +G ++ Sbjct: 80 IGQLVDEFDQARIATASNLLGHSVLVPGN 108 >gi|283782099|ref|YP_003372854.1| flagellar hook capping protein [Pirellula staleyi DSM 6068] gi|283440552|gb|ADB18994.1| flagellar hook capping protein [Pirellula staleyi DSM 6068] Length = 145 Score = 90.0 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 64/135 (47%), Gaps = 9/135 (6%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 +T K KS + LG D FL+L+IT++ +QDP PM ++ V Q+ ++ + Sbjct: 9 STSGAGATTNSDKPKSLEDLGIDEFLQLMITELTNQDPLNPMDNAQMVEQIGQIREIASN 68 Query: 64 VQMNSTLQELLKSNNLAQASSYIGKNITNAD---GSISGVVNAIQVSSTGL------TAI 114 +++ TL +L +L AS IG+ +T D ++ G+V+ + + + Sbjct: 69 DKLSRTLDSVLTGQSLTTASGLIGREVTALDLNNENVEGIVDRVSIEVDEDDATKRTYKV 128 Query: 115 TVDNTEIPITTGIRI 129 + + EI + I Sbjct: 129 HIGDKEIDLKNIREI 143 >gi|74317653|ref|YP_315393.1| flagellar basal body rod modification protein [Thiobacillus denitrificans ATCC 25259] gi|74057148|gb|AAZ97588.1| flagellar basal-body rod modification protein FlgD [Thiobacillus denitrificans ATCC 25259] Length = 221 Score = 90.0 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 3/90 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 + SKS + QD FL LL+ Q+K+QDP P+ +E +Q+A S +E MN +L Sbjct: 16 AEAAKTSKSGSSDTQDRFLSLLVAQMKNQDPLNPLDNAEVTSQMAQLSTVEGIENMNKSL 75 Query: 71 QEL---LKSNNLAQASSYIGKNITNADGSI 97 + L + ++ ++QA++ IG + ++ Sbjct: 76 EALASSMGASQMSQAANLIGHAVLVPGNAV 105 >gi|90021856|ref|YP_527683.1| flagellar basal-body rod modification protein FlgD [Saccharophagus degradans 2-40] gi|89951456|gb|ABD81471.1| flagellar hook capping protein [Saccharophagus degradans 2-40] Length = 238 Score = 90.0 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 11/122 (9%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 ++ LGQ AFL+L+ITQ+++QDP P + SE +AQLA FS +E ++N+ Sbjct: 18 AKKNPTEPQSNELGQSAFLELMITQLENQDPLSPQENSEFIAQLAQFSSVESLDKLNNNF 77 Query: 71 QELLKS---NNLAQASSYIGKNITN--------ADGSISGVVNAIQVSSTGLTAITVDNT 119 S N QAS+ +G+++T A G +S V+ S L I+ + Sbjct: 78 DSFANSFVANQALQASTLVGRSVTVPSDRTELKAGGVVSASVDVPSSSGDILVNISTEGG 137 Query: 120 EI 121 + Sbjct: 138 SL 139 >gi|90411004|ref|ZP_01219018.1| flagellar basal body rod modification protein [Photobacterium profundum 3TCK] gi|90328217|gb|EAS44528.1| flagellar basal body rod modification protein [Photobacterium profundum 3TCK] Length = 238 Score = 89.6 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 11/115 (9%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 Q+ SK + L QD FL LL Q+ QDP +P+ + +AQ+A F+ ++ QMN Sbjct: 27 QETQSKVTGQNELKQDDFLSLLTKQLAQQDPFKPVGNDQMIAQMASFATVDGINQMNEQF 86 Query: 71 QEL---LKSNNLAQASSYIGKN--------ITNADGSISGVVNAIQVSSTGLTAI 114 L + S+ QASS +G++ + NA+G I+G+V Q + I Sbjct: 87 GSLNSAMTSSQALQASSLVGRDVLIPGATGVKNAEGGITGMVKLPQALDNMMVRI 141 >gi|292492362|ref|YP_003527801.1| flagellar hook capping protein [Nitrosococcus halophilus Nc4] gi|291580957|gb|ADE15414.1| flagellar hook capping protein [Nitrosococcus halophilus Nc4] Length = 226 Score = 89.6 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 36/113 (31%), Positives = 59/113 (52%), Gaps = 12/113 (10%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 ++I E+ T+ K + LG + FLKL+ TQ+ HQDP EPM S + Q+A F + Sbjct: 9 LDIYKELGLTRPPDKKPQ-NTELGLEQFLKLMTTQLNHQDPFEPMDNSTFLGQMAQFGTV 67 Query: 61 EQSVQMNSTLQEL---LKSNNLAQASSYIGKNI--------TNADGSISGVVN 102 + ++ +EL ++SN QAS +G+++ A+GS+ G V Sbjct: 68 SGIQDLQNSFKELSGSMQSNQALQASGLVGRSVLVPSEFGALEAEGSLRGAVK 120 >gi|116049008|ref|YP_792190.1| flagellar basal body rod modification protein [Pseudomonas aeruginosa UCBPP-PA14] gi|296390557|ref|ZP_06880032.1| flagellar basal body rod modification protein [Pseudomonas aeruginosa PAb1] gi|115584229|gb|ABJ10244.1| flagellar basal-body rod modification protein FlgD [Pseudomonas aeruginosa UCBPP-PA14] Length = 237 Score = 89.6 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 3/86 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 + K LG+D FLKLL+ Q+K+QDP P + E +AQLA FS +E +N ++ Sbjct: 28 TETGQSVKGSSNLGKDEFLKLLVAQLKNQDPMSPQQNGEFIAQLAQFSTVEGVQSLNKSM 87 Query: 71 QELL---KSNNLAQASSYIGKNITNA 93 + +L +S+ QASS +G+ + A Sbjct: 88 ESILSNYQSSQALQASSLVGRKVIVA 113 >gi|149375035|ref|ZP_01892808.1| Flagellar hook capping protein [Marinobacter algicola DG893] gi|149360924|gb|EDM49375.1| Flagellar hook capping protein [Marinobacter algicola DG893] Length = 224 Score = 89.2 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 68/121 (56%), Gaps = 12/121 (9%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 + + ++ + + ++ LG++ F++L+I Q+K+Q+P EP E ++QLA FS +E Sbjct: 8 DASDVLSKFRLQQEQTAKGSELGKNEFMELMIAQLKNQNPLEPQDNGEFISQLAQFSSLE 67 Query: 62 QSVQMNSTLQEL---LKSNNLAQASSYIGKN--------ITNADGSISGVVNAIQVSSTG 110 + ++ ++ ++ +S QAS+ +G+ + ADG ISG V ++ +++G Sbjct: 68 EMQSLSGSVDDMASQFRSTQALQASAMVGRTVLAPSSIGVLGADGEISGNV-SVPATTSG 126 Query: 111 L 111 L Sbjct: 127 L 127 >gi|325918876|ref|ZP_08180953.1| flagellar hook capping protein [Xanthomonas vesicatoria ATCC 35937] gi|325534913|gb|EGD06832.1| flagellar hook capping protein [Xanthomonas vesicatoria ATCC 35937] Length = 223 Score = 89.2 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 40/138 (28%), Positives = 63/138 (45%), Gaps = 16/138 (11%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 T S K +++LGQ FLKL+ Q++HQDP +PM+ S + QLA FS ++ +N+ Sbjct: 15 STSSAASTKKKEESLGQADFLKLMTEQLQHQDPLKPMENSAFLGQLAQFSTVQGIGDLNT 74 Query: 69 TLQELLKSNNLAQ---ASSYIGKNI--------TNADGSISGVVNA-----IQVSSTGLT 112 + S N Q ++ +G N+ +A GS GVV A + T Sbjct: 75 KVGNFSDSMNADQVLKGAALVGHNVLVPSAQLAIDATGSAKGVVAATSAGFVNFEITDAN 134 Query: 113 AITVDNTEIPITTGIRIS 130 V +P + +S Sbjct: 135 GTFVKQLSVPASAAGEVS 152 >gi|332531617|ref|ZP_08407514.1| flagellar hook capping protein [Hylemonella gracilis ATCC 19624] gi|332038980|gb|EGI75409.1| flagellar hook capping protein [Hylemonella gracilis ATCC 19624] Length = 237 Score = 89.2 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 3/99 (3%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 IN+ VN + S + QD FLKLL+ QI +QDP PM ++ +Q+A + + Sbjct: 10 INSLVNKGTTTTTSSSTDSAEMQDRFLKLLVAQISNQDPLNPMDNAQMTSQMAQINTVTG 69 Query: 63 SVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSIS 98 +N T++ L S + Q ++ +G+ + AD ++S Sbjct: 70 IENLNQTVKNLGNQFTSMQVLQGTALVGREVMVADTTLS 108 >gi|134095098|ref|YP_001100173.1| flagellar basal body rod modification protein [Herminiimonas arsenicoxydans] gi|133739001|emb|CAL62049.1| Basal-body rod modification protein FlgD [Herminiimonas arsenicoxydans] Length = 225 Score = 89.2 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 3/95 (3%) Query: 7 VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66 ++ + KS QD FL LL+TQ+K+QDP P+ ++ +QLA S + ++ Sbjct: 16 LDQMNGTSAAKKSTAEEAQDRFLTLLVTQMKNQDPLNPLDNAQVTSQLAQLSTVTGIDKL 75 Query: 67 NSTLQELL---KSNNLAQASSYIGKNITNADGSIS 98 N TL+ ++ +SN QA++ IG + +IS Sbjct: 76 NGTLESMMGSYQSNQALQAANMIGHGVLAPGSNIS 110 >gi|83646775|ref|YP_435210.1| flagellar hook capping protein [Hahella chejuensis KCTC 2396] gi|83634818|gb|ABC30785.1| Flagellar hook capping protein [Hahella chejuensis KCTC 2396] Length = 136 Score = 89.2 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 39/116 (33%), Positives = 62/116 (53%), Gaps = 4/116 (3%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78 + T+G + FL++ +TQ+ QDP EP+ E +AQLA FS +E + + N ++ LL + Sbjct: 17 KQNTVGIEDFLQIFLTQLTFQDPLEPVDNREFIAQLAQFSSLETATRTNENIEGLLDVQS 76 Query: 79 LAQASSYIGKNITNAD--GSISGVVNAIQVSSTG--LTAITVDNTEIPITTGIRIS 130 +AQ IGK + D G G V+ I ++ +T + D T I + RIS Sbjct: 77 VAQTVGLIGKTVQVNDDQGFAVGKVSTITFNNGKPEITLVQEDGTPIVGISPSRIS 132 >gi|192361923|ref|YP_001982401.1| flagellar basal-body rod modification protein FlgD [Cellvibrio japonicus Ueda107] gi|190688088|gb|ACE85766.1| flagellar basal-body rod modification protein FlgD [Cellvibrio japonicus Ueda107] Length = 231 Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 1/88 (1%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 + ++ LGQ AFL+L+I Q+ +Q+P P +E VAQLA FS +E ++N + Sbjct: 17 TKRQETKRNSNELGQAAFLELMIAQMNNQNPLSPQDNTEFVAQLAQFSSVEGLERLNKSF 76 Query: 71 QELLKSNNLAQASSYIGKNITNADGSIS 98 + SNN QASS +G++++ + Sbjct: 77 NSFM-SNNALQASSLVGRSVSVESDKST 103 >gi|308273520|emb|CBX30122.1| hypothetical protein N47_D29310 [uncultured Desulfobacterium sp.] Length = 113 Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 41/111 (36%), Positives = 58/111 (52%), Gaps = 5/111 (4%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN---L 79 +G+D FL LL+TQ+K+QDP PM+ E AQLA FS +EQ MN+TL + S Sbjct: 1 MGKDEFLNLLVTQLKYQDPLNPMEGQEFSAQLAQFSSLEQLTNMNTTLTGIKDSVGEKKQ 60 Query: 80 AQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 YIGKNI +D +G V + G+ + V +I + I+ Sbjct: 61 DNLLDYIGKNIKTSDDE-TGEVTGVT-YQNGIGYLMVGENKILPDNVVEIT 109 >gi|117928056|ref|YP_872607.1| flagellar hook capping protein [Acidothermus cellulolyticus 11B] gi|117648519|gb|ABK52621.1| flagellar hook capping protein [Acidothermus cellulolyticus 11B] Length = 144 Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 33/110 (30%), Positives = 57/110 (51%), Gaps = 4/110 (3%) Query: 24 GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQAS 83 FLKLL+ Q+ HQDP P +S +A+ A F+ ++ MN + L + A Sbjct: 32 DPQTFLKLLVAQLSHQDPLNPTDSSTYIAEEAQFAMVQTMNTMNQLMTNLYHDMQTSSAV 91 Query: 84 SYIGKNI--TNADGS-ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 + IGK + T +DG+ ++GVV A S G + + +T +P++ ++ Sbjct: 92 ALIGKTVTYTASDGTPVTGVVAAAMPGSNG-PMLRIGSTTVPLSAITEVT 140 >gi|206603147|gb|EDZ39627.1| Probable flagellar hook capping protein FlgD [Leptospirillum sp. Group II '5-way CG'] Length = 276 Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 10/119 (8%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75 ++ LG FL L+I+Q+++QDP P+ + AQLA FSQ++Q +N + + Sbjct: 26 APPPRQKLGMGDFLHLMISQLQYQDPLHPLNNTRFAAQLAQFSQLDQLTHLNRGVGTIAH 85 Query: 76 SN---NLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 N ++G+ +T NA ++ +G ++T + +RI + Sbjct: 86 DGADANKMMMVGFLGQRVTMKG-------NAFRLDPSGNVSLTYRQAGASQSGHLRIFD 137 >gi|303248691|ref|ZP_07334945.1| flagellar hook capping protein [Desulfovibrio fructosovorans JJ] gi|302489947|gb|EFL49873.1| flagellar hook capping protein [Desulfovibrio fructosovorans JJ] Length = 245 Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 35/95 (36%), Positives = 56/95 (58%), Gaps = 6/95 (6%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78 +LGQDAFL+LL+TQ+++QDP PM + VA+LA FS +EQ ++N+ + +L N Sbjct: 22 GAASLGQDAFLQLLVTQLQYQDPLSPMDDKDFVAELAQFSSLEQLTEINTGIDKLADLNT 81 Query: 79 LAQ---ASSYIGKNITNADGSIS---GVVNAIQVS 107 +Q A ++IGK I ++S G + + Sbjct: 82 QSQVMGAVNFIGKTIEANGEAVSLTKGKATPVTFT 116 >gi|54308096|ref|YP_129116.1| flagellar basal body rod modification protein [Photobacterium profundum SS9] gi|46912522|emb|CAG19314.1| Putative basal-body rod modification protein FlgD [Photobacterium profundum SS9] Length = 238 Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 56/115 (48%), Gaps = 11/115 (9%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 Q SK + L QD FL LL Q+ QDP +P+ + +AQ+A F+ ++ QMN Sbjct: 27 QDTQSKVTGQNELKQDDFLSLLTKQLAQQDPFKPVGNDQMIAQMASFATVDGINQMNEQF 86 Query: 71 QEL---LKSNNLAQASSYIGKN--------ITNADGSISGVVNAIQVSSTGLTAI 114 L + S+ QASS +G++ + A+G I+G+V Q + I Sbjct: 87 GSLNSAMTSSQALQASSLVGRDVLIPGATGVKKAEGGITGMVKLPQALDNMMVRI 141 >gi|313901444|ref|ZP_07834902.1| flagellar hook capping protein [Thermaerobacter subterraneus DSM 13965] gi|313468294|gb|EFR63750.1| flagellar hook capping protein [Thermaerobacter subterraneus DSM 13965] Length = 154 Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 10/117 (8%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74 S L DAF +LL Q+++QDP +PM+ + VAQLA +Q+E++ + + L L Sbjct: 27 SGPGGPGGLAPDAFFRLLAAQLRYQDPLQPMQDTAFVAQLAQLTQLEETRALRAALSGL- 85 Query: 75 KSNNLAQASSYIGKNI--TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129 A +G+ + T A G+ +G V +++ + +D + + + Sbjct: 86 ------SALPLLGRTVEITTAQGTRTGTVTGVRMDPA-APGLMIDGRPVAWADVLDL 135 >gi|294500932|ref|YP_003564632.1| flagellar hook assembly protein [Bacillus megaterium QM B1551] gi|294350869|gb|ADE71198.1| flagellar hook assembly protein [Bacillus megaterium QM B1551] Length = 142 Score = 88.8 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 37/137 (27%), Positives = 67/137 (48%), Gaps = 8/137 (5%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 ++ ++ K +LG+D FLKLLI Q+++QDP PM+ + +AQ+A FS +EQ Sbjct: 6 MSDLYLSNRETQVKQTGNSSLGKDDFLKLLIAQLQNQDPMNPMQDKDFIAQMAQFSSLEQ 65 Query: 63 SVQMNSTLQELLKSNNLA---QASSYIGKNITNAD---GSISGVVNAIQVSSTGLTAITV 116 M+++L L + + + S IGK D GV++ V + ++ Sbjct: 66 MTNMSTSLNTFLTQSQASPILKGSELIGKTAAWLDEEGNKKQGVISTASVKNNEVSFRIN 125 Query: 117 DN--TEIPITTGIRISN 131 D T + + + +S+ Sbjct: 126 DENHTVLSLNDILEVSS 142 >gi|126668557|ref|ZP_01739511.1| Flagellar hook capping protein [Marinobacter sp. ELB17] gi|126626962|gb|EAZ97605.1| Flagellar hook capping protein [Marinobacter sp. ELB17] Length = 224 Score = 88.5 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 67/124 (54%), Gaps = 12/124 (9%) Query: 7 VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66 ++ Q + + K LG++ F++L++ Q+K+Q+P +P E ++QLA FS +E+ ++ Sbjct: 13 LSQYQLKQQSASGKGELGKNEFMELMLAQLKNQNPLDPQDNGEFISQLAQFSSLEEMQKL 72 Query: 67 NSTLQELL---KSNNLAQASSYIGKNI--------TNADGSISGVVNAIQVSSTGLTAIT 115 + + ++ +S QAS+ +GK + A G ++G V+ + S+ G+ Sbjct: 73 SGNVDSVIGEFRSTKALQASAMVGKTVLVASDLAMLGASGEVNGTVD-VPASTGGVQVSI 131 Query: 116 VDNT 119 ++ + Sbjct: 132 LNGS 135 >gi|313673417|ref|YP_004051528.1| flagellar hook capping protein [Calditerrivibrio nitroreducens DSM 19672] gi|312940173|gb|ADR19365.1| flagellar hook capping protein [Calditerrivibrio nitroreducens DSM 19672] Length = 222 Score = 88.5 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 3/89 (3%) Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72 + KK L +D FL L+ITQ+K+QDP PM +E +AQ S +EQ + + +++ Sbjct: 17 NVKPREPKKDLDKDDFLSLMITQLKNQDPLSPMNNNEFIAQTTQMSSLEQLINIAKLMEK 76 Query: 73 LLKS---NNLAQASSYIGKNITNADGSIS 98 + L +S+IGKN++ S S Sbjct: 77 QNAQSTESQLLSGASFIGKNVSYNGNSFS 105 >gi|42528269|ref|NP_973367.1| flagellar basal body rod modification protein [Treponema denticola ATCC 35405] gi|4580017|gb|AAD24205.1|AF049342_3 flagellar hook assembly protein FlgD [Treponema denticola ATCC 33520] gi|4426942|gb|AAD20616.1| flagellar hook assembly scaffolding protein FlgD [Treponema denticola] gi|41819539|gb|AAS13286.1| flagellar hook assembly scaffolding protein [Treponema denticola ATCC 35405] gi|325474541|gb|EGC77727.1| flagellar hook assembly protein FlgD [Treponema denticola F0402] Length = 169 Score = 88.5 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 4/123 (3%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 Q K+ LG+D FL+LLI Q+ HQDPT PM+ ++ + Q+A FS +EQ MN Sbjct: 44 NKQNFAETRVPKQQLGKDDFLQLLIAQLTHQDPTSPMEDTQFIGQMAQFSSLEQMTNMNK 103 Query: 69 TLQELLKSNNLAQASSYIGKNITNADGS--ISGVVNAIQVSSTGLTAITVDNTEIPITTG 126 L + + A + +GK + GS +SG ++A + + V+ + Sbjct: 104 NFAALNELMTGSSAVNAVGKKVDLDLGSSQVSGYISA--ATRGINPEVMVNGNWYNWSAV 161 Query: 127 IRI 129 + Sbjct: 162 KTV 164 >gi|330809243|ref|YP_004353705.1| flagellar hook capping protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377351|gb|AEA68701.1| Putative flagellar hook capping protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 140 Score = 88.5 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 43/131 (32%), Positives = 72/131 (54%), Gaps = 8/131 (6%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 I E++ T E ++S+ LGQ+ F+KL +T++ QDP EP+ E +AQ+A F+ +EQ Sbjct: 6 IGNELSSTTSELAQSR----LGQEDFIKLFLTELTFQDPLEPINNREFLAQMAQFANLEQ 61 Query: 63 SVQMNSTLQELLKSNNLAQASSYIGKNIT---NADGSISGVVNAIQVSSTGLTAITVDNT 119 + N L+ N +Q+ +G+ + G+ G V AI SSTG ++V T Sbjct: 62 TRITNENTDNLVSMNATSQSLGLLGRQVEVSITTGGTAIGSVTAIAFSSTG-PVLSVKRT 120 Query: 120 EIPITTGIRIS 130 + + T +R+S Sbjct: 121 DGTVLTDVRLS 131 >gi|238926248|ref|ZP_04658008.1| possible flagellar basal body rod modification protein [Selenomonas flueggei ATCC 43531] gi|238885928|gb|EEQ49566.1| possible flagellar basal body rod modification protein [Selenomonas flueggei ATCC 43531] Length = 168 Score = 88.5 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 42/141 (29%), Positives = 72/141 (51%), Gaps = 21/141 (14%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 Q + SK LG+DAFL+LL+TQ+++QDP P +E ++QLA FS +EQ ++ L Sbjct: 21 NQAKAASKDNSALGKDAFLQLLVTQMRYQDPLNPQDNAEYLSQLAQFSALEQMTNVSKGL 80 Query: 71 QELLK-------SNNLAQASSYIGKNI------TNADGSIS-----GVVNAIQVSSTGLT 112 +++ K S + Q SS IG+ I DG+++ G V + ++ + Sbjct: 81 EKVSKIVDNIDSSVLIGQLSSMIGQPIQWITETKGKDGAVTKQNFEGKVIGVSITDGAPS 140 Query: 113 AITVDNT---EIPITTGIRIS 130 I N ++ I+ +R+ Sbjct: 141 IIADVNGQSHKVQISEVVRVG 161 >gi|296123338|ref|YP_003631116.1| flagellar hook capping protein [Planctomyces limnophilus DSM 3776] gi|296015678|gb|ADG68917.1| flagellar hook capping protein [Planctomyces limnophilus DSM 3776] Length = 139 Score = 88.5 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 34/114 (29%), Positives = 64/114 (56%), Gaps = 4/114 (3%) Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA 80 L +AF+KLLITQ+++QDP+ PM E ++Q++ + +++ L+ L S L Sbjct: 25 NALDTEAFMKLLITQLQNQDPSNPMSNEELLSQISQMRNLTSDIELTDALEGLTLSQQLN 84 Query: 81 QASSYIGKNI---TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 +++++GK I T +SGVV+ + V + + V + E+P+T ++N Sbjct: 85 SSTAFLGKEIKGTTANGTEVSGVVDRVYVKDK-ASFLVVGDKEVPLTNVTDVTN 137 >gi|148546705|ref|YP_001266807.1| flagellar basal body rod modification protein [Pseudomonas putida F1] gi|148510763|gb|ABQ77623.1| flagellar hook capping protein [Pseudomonas putida F1] Length = 234 Score = 88.5 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 3/92 (3%) Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67 + + +LG+DAFL+LL+TQ++HQ+P +P SE VAQLA FS +E +N Sbjct: 23 TKKTTDTASKTGNDSLGKDAFLQLLVTQMQHQNPLDPQDNSEFVAQLAQFSSLEGITSLN 82 Query: 68 STLQEL---LKSNNLAQASSYIGKNITNADGS 96 ++ + + S+ QASS +G+++ + Sbjct: 83 DSVSSITSAMASSQALQASSLVGRSVVVQNDK 114 >gi|42524756|ref|NP_970136.1| basal-body rod modification protein flgD [Bdellovibrio bacteriovorus HD100] gi|39576966|emb|CAE78195.1| basal-body rod modification protein flgD [Bdellovibrio bacteriovorus HD100] Length = 334 Score = 88.5 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 3/85 (3%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75 ++ +L +DAF KL++TQ+K+QDPT P+K+ E AQLA FS +EQ MN +L E+ Sbjct: 61 RAVGNPSLDKDAFFKLMLTQMKNQDPTNPLKSHEMAAQLASFSSLEQMQNMNKSLDEMKN 120 Query: 76 SNNLA---QASSYIGKNITNADGSI 97 + QA + IGK + + Sbjct: 121 GQKPSENFQALNLIGKAVAGDSSKV 145 >gi|217077694|ref|YP_002335412.1| basal-body rod modification protein FlgD [Thermosipho africanus TCF52B] gi|217037549|gb|ACJ76071.1| basal-body rod modification protein FlgD [Thermosipho africanus TCF52B] Length = 222 Score = 88.1 bits (217), Expect = 3e-16, Method: Composition-based stats. Identities = 40/129 (31%), Positives = 65/129 (50%), Gaps = 11/129 (8%) Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65 + K + KK L ++AFL+LL+TQ+K+QDP EP+K E +AQ+ S +EQ Sbjct: 9 NIYNLSTNSKKQEIKKELDKEAFLELLVTQLKNQDPLEPLKDREFIAQMTQLSTLEQITN 68 Query: 66 MNSTLQELLKSNNLA---QASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIP 122 M+ ++Q+ ++S+ QASS +GK + S G T+ V E P Sbjct: 69 MSESVQKFVESSASLYRAQASSMVGKYAVVKSN--------VLELSNGTTSTQVFKLESP 120 Query: 123 ITTGIRISN 131 ++I + Sbjct: 121 SHVILKIYD 129 >gi|187478184|ref|YP_786208.1| flagellar basal body rod modification protein [Bordetella avium 197N] gi|115422770|emb|CAJ49298.1| basal-body rod modification protein [Bordetella avium 197N] Length = 230 Score = 88.1 bits (217), Expect = 3e-16, Method: Composition-based stats. Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 3/97 (3%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 T T + + S + QD FLKLL+TQ+K+QDP PM+ +E +QLA S +E Sbjct: 7 TSNAKTPEVGNASANAAKSIQDQFLKLLVTQLKNQDPLNPMQNAELTSQLAQISTVEGIT 66 Query: 65 QMNSTLQELLKS---NNLAQASSYIGKNITNADGSIS 98 +N TL + + A++ IGK + +S Sbjct: 67 NLNKTLLSISGQIDVSQSMNAAALIGKAVLVPGDKVS 103 >gi|319649560|ref|ZP_08003716.1| flagellar basal body rod modification protein D [Bacillus sp. 2_A_57_CT2] gi|317398722|gb|EFV79404.1| flagellar basal body rod modification protein D [Bacillus sp. 2_A_57_CT2] Length = 150 Score = 88.1 bits (217), Expect = 3e-16, Method: Composition-based stats. Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 16/134 (11%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 ++ + Q ++ LG+D FLK+L+TQ+++QDP PM+ + +AQ+A FS +EQ Sbjct: 7 SSLMLSNYQSQTRKTGSDILGKDDFLKILMTQLQNQDPMNPMQDKDFIAQMATFSSLEQM 66 Query: 64 VQMNSTLQELLK---SNNLAQASSYIGKNITN-------------ADGSISGVVNAIQVS 107 MN T+++L+ N L ++++GKN+T +G V +IQ Sbjct: 67 TNMNKTMEKLVAFQEQNQLMTYNNFLGKNVTWHKLTESSEPNEEPIIEEGTGRVVSIQYK 126 Query: 108 STGLTAITVDNTEI 121 + I D T++ Sbjct: 127 NNTAVFILDDGTKL 140 >gi|254440284|ref|ZP_05053778.1| flagellar hook capping protein, putative [Octadecabacter antarcticus 307] gi|198255730|gb|EDY80044.1| flagellar hook capping protein, putative [Octadecabacter antarcticus 307] Length = 233 Score = 88.1 bits (217), Expect = 4e-16, Method: Composition-based stats. Identities = 35/145 (24%), Positives = 62/145 (42%), Gaps = 21/145 (14%) Query: 1 MEINTEVNPTQQ-----------EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASE 49 M++N+ Q E ++ K LGQ FLKL+ Q+++QDP PM + Sbjct: 1 MDVNSNSQSAQNALLSKLGISTTEERNAEPKDELGQSDFLKLMTAQLQNQDPFAPMDNGD 60 Query: 50 QVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSISGVVNAIQV 106 VAQ+A FS + +MN T+ + + +A + + +G ++ N + Sbjct: 61 FVAQMAQFSSVAGISEMNQTMSSIAGQMSQFQVASSVNMLGHSVMMPG-------NIARA 113 Query: 107 SSTGLTAITVDNTEIPITTGIRISN 131 + G T+D + T I + Sbjct: 114 DNNGEIQGTLDLASASLDTQIEFLD 138 >gi|77165839|ref|YP_344364.1| flagellar hook capping protein [Nitrosococcus oceani ATCC 19707] gi|254433359|ref|ZP_05046867.1| flagellar hook capping protein, putative [Nitrosococcus oceani AFC27] gi|76884153|gb|ABA58834.1| Flagellar hook capping protein [Nitrosococcus oceani ATCC 19707] gi|207089692|gb|EDZ66963.1| flagellar hook capping protein, putative [Nitrosococcus oceani AFC27] Length = 226 Score = 88.1 bits (217), Expect = 4e-16, Method: Composition-based stats. Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 11/98 (11%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL-- 73 K LG + FLKL+ Q+ +QDP EPM S ++Q+A F ++ + ++ QE+ Sbjct: 23 KKAQNTELGLEQFLKLMTAQLSNQDPFEPMDNSTFLSQVAQFGTVKGIQDLQASFQEVSG 82 Query: 74 -LKSNNLAQASSYIGKNI--------TNADGSISGVVN 102 L+SN QAS +G+++ A GSI G V Sbjct: 83 SLQSNQALQASGLVGRSVLVPSAESSLEAGGSIRGAVE 120 >gi|295706278|ref|YP_003599353.1| flagellar hook assembly protein [Bacillus megaterium DSM 319] gi|294803937|gb|ADF41003.1| flagellar hook assembly protein [Bacillus megaterium DSM 319] Length = 142 Score = 88.1 bits (217), Expect = 4e-16, Method: Composition-based stats. Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 8/124 (6%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75 K +LG+D FLKLLI Q+++QDP PM+ + +AQ+A FS +EQ M+++L L Sbjct: 19 KQTGNSSLGKDDFLKLLIAQLQNQDPMNPMQDKDFIAQMAQFSSLEQMTNMSTSLNTFLT 78 Query: 76 SNNLA---QASSYIGKNITNAD---GSISGVVNAIQVSSTGLTAITVDN--TEIPITTGI 127 + + + S IGK D GV+ V + ++ D T + + + Sbjct: 79 QSQASPILKGSELIGKTAAWLDEEGNKKQGVILTASVKNNEVSFGINDENHTVLSLNDIL 138 Query: 128 RISN 131 +S+ Sbjct: 139 EVSS 142 >gi|91225872|ref|ZP_01260841.1| flagellar basal-body rod modification protein D [Vibrio alginolyticus 12G01] gi|269965425|ref|ZP_06179544.1| flagellar basal body rod modification protein [Vibrio alginolyticus 40B] gi|91189522|gb|EAS75798.1| flagellar basal-body rod modification protein D [Vibrio alginolyticus 12G01] gi|269829904|gb|EEZ84134.1| flagellar basal body rod modification protein [Vibrio alginolyticus 40B] Length = 236 Score = 88.1 bits (217), Expect = 4e-16, Method: Composition-based stats. Identities = 27/88 (30%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65 + + ++ +S K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ + Sbjct: 20 SLQESNKKAEESTGKQDLKQEDFLSLLTKQLSQQDPFKPVSNDQMIAQMASFATVDGIGK 79 Query: 66 MNSTLQEL---LKSNNLAQASSYIGKNI 90 MN+ + L + SN QASS +G+++ Sbjct: 80 MNTQFESLNSSMTSNQALQASSLVGRDV 107 >gi|254499107|ref|ZP_05111797.1| Putative flagellar hook capping protein [Legionella drancourtii LLAP12] gi|254351646|gb|EET10491.1| Putative flagellar hook capping protein [Legionella drancourtii LLAP12] Length = 123 Score = 88.1 bits (217), Expect = 4e-16, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 52/95 (54%) Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ 81 +GQ ++K+ + ++ +QDP +P+ E +AQ+A FS ++Q+ N L +L++ + + Sbjct: 9 DVGQADYMKVFMQELTYQDPLKPIDNREFMAQMAQFSTLQQASASNENLMKLIQLHYGNR 68 Query: 82 ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITV 116 S +G ++ G+V AI+ + + + + Sbjct: 69 GLSLLGHSVKITGEEGYGLVEAIRFTEEQMPEVRI 103 >gi|254446081|ref|ZP_05059557.1| flagellar hook capping protein [Verrucomicrobiae bacterium DG1235] gi|198260389|gb|EDY84697.1| flagellar hook capping protein [Verrucomicrobiae bacterium DG1235] Length = 205 Score = 87.7 bits (216), Expect = 4e-16, Method: Composition-based stats. Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 2/126 (1%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 N + +K LGQD F KLL TQ+ QDP EPM+ + +AQ+A FS++E + Sbjct: 15 NVTTTNSASSGQDRIEQKALGQDEFFKLLTTQLASQDPLEPMEDTAFIAQMASFSELEMT 74 Query: 64 VQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPI 123 + + + A A YIGK ++ + G + G V +++ G T + +D + Sbjct: 75 SNLTKSFDNFNSTQQFASAHGYIGKTVSLSSGEV-GEVTSVE-RQNGQTLVFLDGSNTDG 132 Query: 124 TTGIRI 129 I Sbjct: 133 RDIGTI 138 >gi|255099421|ref|ZP_05328398.1| putative basal-body rod modification protein [Clostridium difficile QCD-63q42] Length = 202 Score = 87.7 bits (216), Expect = 4e-16, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 13/133 (9%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 T +D F+K+L+ Q+ +QDP P +E V+QLA F+ +E+ Sbjct: 39 GNQTVTDNGTPIIGQGDDADKDLFMKILVAQMGNQDPMNPQDPTEYVSQLAQFATLEKMS 98 Query: 65 QMNSTLQELLK-------SNNLAQASSYIGKNITNA-----DGSISGVVNAIQVSSTGLT 112 MN L LL ++ L+ A+S IGK + + D +I GVV + + + Sbjct: 99 AMNEKLDVLLALSNSTLINSALSMATSLIGKEVEVSGEEKEDENIVGVVKSTYIKDGEVH 158 Query: 113 A-ITVDNTEIPIT 124 + VD ++ + Sbjct: 159 LELEVDGSDKTVG 171 >gi|254230141|ref|ZP_04923536.1| Flagellar hook capping protein [Vibrio sp. Ex25] gi|262394940|ref|YP_003286794.1| flagellar basal-body rod modification protein FlgD [Vibrio sp. Ex25] gi|151937334|gb|EDN56197.1| Flagellar hook capping protein [Vibrio sp. Ex25] gi|262338534|gb|ACY52329.1| flagellar basal-body rod modification protein FlgD [Vibrio sp. Ex25] Length = 236 Score = 87.7 bits (216), Expect = 5e-16, Method: Composition-based stats. Identities = 27/88 (30%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65 + + ++ +S K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ + Sbjct: 20 SLQESNKKTEESTGKQDLKQEDFLSLLTKQLSQQDPFKPVSNDQMIAQMASFATVDGIGK 79 Query: 66 MNSTLQEL---LKSNNLAQASSYIGKNI 90 MN+ + L + SN QASS +G+++ Sbjct: 80 MNTQFESLNSSMTSNQALQASSLVGRDV 107 >gi|188586024|ref|YP_001917569.1| flagellar hook capping protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350711|gb|ACB84981.1| flagellar hook capping protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 145 Score = 87.7 bits (216), Expect = 5e-16, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 11/122 (9%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 QQ + +++ LGQD F+K+L TQ++HQDP +PM E + Q+ F+Q++Q +N T Sbjct: 19 QQNLPQLENQDDLGQDEFIKILTTQLQHQDPLDPMDDREFIVQMTSFNQLDQLQSLNETQ 78 Query: 71 QELLKSNNLAQASSYIGKNIT--NADGS-ISGVVNAIQVSSTGLTAITVDNTEIPITTGI 127 ++ + + +G+++ N DG I G V AI+ G +D ++ + Sbjct: 79 EQ-------SSMLNLLGRHVVAENEDGEIIEGTVTAIR-DFNGSPGFEIDGKKVDFEDVV 130 Query: 128 RI 129 I Sbjct: 131 EI 132 >gi|260886639|ref|ZP_05897902.1| flagellar hook capping protein [Selenomonas sputigena ATCC 35185] gi|330839529|ref|YP_004414109.1| flagellar hook capping protein [Selenomonas sputigena ATCC 35185] gi|260863782|gb|EEX78282.1| flagellar hook capping protein [Selenomonas sputigena ATCC 35185] gi|329747293|gb|AEC00650.1| flagellar hook capping protein [Selenomonas sputigena ATCC 35185] Length = 178 Score = 87.7 bits (216), Expect = 5e-16, Method: Composition-based stats. Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 26/147 (17%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 + ++ +LG+DAFL+LL+TQ++HQDP P ++ +AQLA FS +EQ QM Sbjct: 23 ASQTKTARKNDSLGKDAFLQLLVTQLRHQDPLSPDDNTQYIAQLAQFSSLEQMTQMVKGF 82 Query: 71 QELLK-------SNNLAQASSYIGKNI---------------TNADGSISGVVNAIQVSS 108 + + K S + S+ IGKNI + +G V ++VS+ Sbjct: 83 ENVSKLVSNIDSSVLVGSLSNMIGKNIQWTHVTKTKDAEGNPKTKSETFAGNVRGVKVSN 142 Query: 109 TGLTAITVDNT----EIPITTGIRISN 131 + D E+ ++ I++ Sbjct: 143 GKPMVVAQDAKGKLHEVEVSEIDAIAD 169 >gi|88799020|ref|ZP_01114601.1| Flagellar hook capping protein [Reinekea sp. MED297] gi|88778247|gb|EAR09441.1| Flagellar hook capping protein [Reinekea sp. MED297] Length = 248 Score = 87.7 bits (216), Expect = 5e-16, Method: Composition-based stats. Identities = 30/102 (29%), Positives = 54/102 (52%), Gaps = 5/102 (4%) Query: 2 EINTEVNPTQ--QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59 +N+ + + + S LG+ FL+L+I ++ +QDP +P ++ +A+LA FS Sbjct: 6 NVNSALGQYDIGNKKKEETSNDELGKTEFLELMIAKLNNQDPLKPQDDAQFIAELAQFST 65 Query: 60 MEQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSIS 98 +E M++ +EL KS+ QASS +G +T + S Sbjct: 66 VEGIQNMSAGFEELATSYKSSQALQASSLVGGAVTIDGNTSS 107 >gi|330502733|ref|YP_004379602.1| flagellar basal body rod modification protein [Pseudomonas mendocina NK-01] gi|328917019|gb|AEB57850.1| flagellar basal body rod modification protein [Pseudomonas mendocina NK-01] Length = 221 Score = 87.7 bits (216), Expect = 5e-16, Method: Composition-based stats. Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 Q +K K LG++ FL LL+ Q+ +Q+P EP E +AQLA FSQ+E ++N+++ Sbjct: 15 QIKQDTKQNKDLGKNEFLNLLVAQLNNQNPLEPQGNGEFIAQLAQFSQVEGIEKLNTSMG 74 Query: 72 ELL---KSNNLAQASSYIGKNITNADGS 96 +L +S+ QASS +G+ + Sbjct: 75 SMLSSFQSSQALQASSLVGRKVIVPSEK 102 >gi|297569154|ref|YP_003690498.1| flagellar hook capping protein [Desulfurivibrio alkaliphilus AHT2] gi|296925069|gb|ADH85879.1| flagellar hook capping protein [Desulfurivibrio alkaliphilus AHT2] Length = 251 Score = 87.7 bits (216), Expect = 5e-16, Method: Composition-based stats. Identities = 37/96 (38%), Positives = 55/96 (57%), Gaps = 4/96 (4%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 Q + +L + F+ L ITQ++HQDP +PM++ E +QLA FS ME ++QM+ + Sbjct: 17 QSNHPEPVGSSSLDRQDFMTLFITQLQHQDPMKPMESYEMASQLAQFSSMEATMQMSDNM 76 Query: 71 QELLK---SNNLAQASSYIGKNITNADGSISGVVNA 103 ++LL S N Q S IGK I DG+ GV + Sbjct: 77 EKLLSYQMSQNNLQLLSLIGKTI-ETDGNEIGVTDG 111 >gi|78224297|ref|YP_386044.1| flagellar hook capping protein [Geobacter metallireducens GS-15] gi|78195552|gb|ABB33319.1| Flagellar hook capping protein [Geobacter metallireducens GS-15] Length = 218 Score = 87.7 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 3/98 (3%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 +N T + K + +D FLKL +TQ++HQDP P +SE + QLA +Q+EQ Sbjct: 2 VNGITTDTTAAAAAMKKSTGMNKDDFLKLFVTQLQHQDPLNPADSSEFIGQLAQLTQVEQ 61 Query: 63 SVQMNSTLQ---ELLKSNNLAQASSYIGKNITNADGSI 97 + NS L +L + SYIGK++T I Sbjct: 62 AYNTNSNLTKIIDLFNGATSLSSVSYIGKSVTANGDQI 99 >gi|89098637|ref|ZP_01171519.1| flagellar basal body rod modification protein D [Bacillus sp. NRRL B-14911] gi|89086599|gb|EAR65718.1| flagellar basal body rod modification protein D [Bacillus sp. NRRL B-14911] Length = 211 Score = 87.7 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 40/142 (28%), Positives = 74/142 (52%), Gaps = 16/142 (11%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 ++ + + ++ + LG+D FLK+L+ Q+++QDP+ P++ + +AQ+A FS +EQ Sbjct: 7 SSLMLSSYKKDERKTGSDILGKDDFLKILMVQLQNQDPSNPLQDKDFIAQMATFSSLEQM 66 Query: 64 VQMNSTLQELLKSN---NLAQASSYIGKNIT----------NADGSI---SGVVNAIQVS 107 MN+++Q+L++ +L S + GK I NA SI +G V++IQ Sbjct: 67 TNMNTSIQKLVQMQEQDSLIAYSEFAGKEIKWHKVAESDDPNAQPSIEEGTGRVSSIQFK 126 Query: 108 STGLTAITVDNTEIPITTGIRI 129 + I D TE+ + Sbjct: 127 NGNAVFILEDGTELGPANISEV 148 >gi|254516988|ref|ZP_05129046.1| flagellar hook capping protein [gamma proteobacterium NOR5-3] gi|219674493|gb|EED30861.1| flagellar hook capping protein [gamma proteobacterium NOR5-3] Length = 233 Score = 87.3 bits (215), Expect = 6e-16, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 3/90 (3%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN- 67 T K+ S + +G D FL L++ Q+++QDP++PM + + QLA F + ++N Sbjct: 14 STPLGNEKAGSVEDMGSDDFLTLMVAQLENQDPSKPMDNMQFMGQLAQFGTVSGIQELNA 73 Query: 68 --STLQELLKSNNLAQASSYIGKNITNADG 95 S L L QA++ +G+++ Sbjct: 74 GFSGLSNALSGGQALQAAALVGRSVVTDSN 103 >gi|84514834|ref|ZP_01002197.1| Flagellar scaffolding protein FlgD [Loktanella vestfoldensis SKA53] gi|84510993|gb|EAQ07447.1| Flagellar scaffolding protein FlgD [Loktanella vestfoldensis SKA53] Length = 233 Score = 87.3 bits (215), Expect = 6e-16, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 56/109 (51%), Gaps = 11/109 (10%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 +++ + + + K+ LGQ FLKL+ Q+++QDP PM + +AQ+A FS + Sbjct: 16 SKLGISTTQDKNAVPKEELGQTDFLKLMTAQLQNQDPFAPMDNGDFIAQMAQFSSVAGIS 75 Query: 65 QMNSTLQEL---LKSNNLAQASSYIGKNI--------TNADGSISGVVN 102 +M+ T+ + + +A + +Y+G ++ + +G I G + Sbjct: 76 KMSETMSGIADQMGQFRVASSVNYLGHSVMIPGNLARADDNGEIHGAIE 124 >gi|330811236|ref|YP_004355698.1| basal-body rod modification protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379344|gb|AEA70694.1| Putative basal-body rod modification protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 240 Score = 87.3 bits (215), Expect = 6e-16, Method: Composition-based stats. Identities = 35/96 (36%), Positives = 53/96 (55%), Gaps = 3/96 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 +T + + KK LG+DAFL+LL+TQ+K+Q+P EP E VAQLA FS +E Sbjct: 24 STTTDALGAATGAATGKKELGKDAFLQLLVTQLKNQNPLEPQDNGEFVAQLAQFSSLEGI 83 Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGS 96 +N T+ + S+ QASS +G+++ Sbjct: 84 TTLNETVSGIAGNYNSSQALQASSLVGRSVIAPGDK 119 >gi|313894826|ref|ZP_07828386.1| flagellar hook capping protein [Selenomonas sp. oral taxon 137 str. F0430] gi|312976507|gb|EFR41962.1| flagellar hook capping protein [Selenomonas sp. oral taxon 137 str. F0430] Length = 180 Score = 87.3 bits (215), Expect = 6e-16, Method: Composition-based stats. Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 21/142 (14%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 QE + +K LG+DAFL+LL+TQ+K+QDP +P S+ ++QLA FS +EQ + L Sbjct: 25 NQEKAANKKNDALGKDAFLQLLVTQMKYQDPLDPQDNSQYLSQLAQFSALEQMTNVAKGL 84 Query: 71 -------QELLKSNNLAQASSYIGK------NITNADGSIS-----GVVNAIQVSSTGLT 112 + S + Q S IG+ + DG ++ G + + ++ + Sbjct: 85 SDVQKVVDNINSSVLIGQLSGMIGQKAQWITQVKGEDGKMTKQSFEGKIIGVSITDGEPS 144 Query: 113 AITVDNTE---IPITTGIRISN 131 I N + + I+ +RI + Sbjct: 145 VIADVNGKTHQVKISELVRIGD 166 >gi|150021172|ref|YP_001306526.1| flagellar hook capping protein [Thermosipho melanesiensis BI429] gi|149793693|gb|ABR31141.1| flagellar hook capping protein [Thermosipho melanesiensis BI429] Length = 221 Score = 87.3 bits (215), Expect = 6e-16, Method: Composition-based stats. Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 3/73 (4%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79 KK L ++AFL+LL+TQ+K+QDP EP+K E +AQ+ S +EQ M+ ++Q+ ++S+ Sbjct: 22 KKELDKEAFLELLVTQLKNQDPLEPLKDREFIAQMTQLSTLEQITNMSESVQKFVESSAS 81 Query: 80 A---QASSYIGKN 89 Q SS +GK Sbjct: 82 LYRAQVSSMVGKY 94 >gi|300114800|ref|YP_003761375.1| flagellar hook capping protein [Nitrosococcus watsonii C-113] gi|299540737|gb|ADJ29054.1| flagellar hook capping protein [Nitrosococcus watsonii C-113] Length = 226 Score = 87.3 bits (215), Expect = 7e-16, Method: Composition-based stats. Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 11/98 (11%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL-- 73 K LG + FLKL+ Q+ +QDP +PM S ++Q+A F ++ + ++ +E+ Sbjct: 23 KKAQNTELGLEQFLKLMTAQLNNQDPFKPMDNSTFLSQVAQFGTVKGIQDLQTSFKEVSG 82 Query: 74 -LKSNNLAQASSYIGKNI--------TNADGSISGVVN 102 L+SN QAS +G+++ A GSI G V Sbjct: 83 SLQSNQALQASGLVGRSVLVPSAEGSLEAGGSIRGAVE 120 >gi|120554032|ref|YP_958383.1| flagellar hook capping protein [Marinobacter aquaeolei VT8] gi|120323881|gb|ABM18196.1| flagellar hook capping protein [Marinobacter aquaeolei VT8] Length = 225 Score = 87.3 bits (215), Expect = 7e-16, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 67/123 (54%), Gaps = 13/123 (10%) Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 + K+ LG+DAF++L++ Q+K+Q+P EP + +AQLA FS +E+ ++ ++ Sbjct: 19 NQEGKTPGGNELGKDAFMELMLAQLKNQNPLEPQDNGDFIAQLAQFSSLEEMQNLSGSVD 78 Query: 72 EL---LKSNNLAQASSYIGKNI--------TNADGSISGVVNAIQVSSTGLTAITVDNTE 120 ++ +S+ QAS+ +GK + ++G I+G + +STG ++V N Sbjct: 79 DVVGQFRSSQALQASAMVGKTVLAPSSVGILGSEGEITGTIQ--VPASTGGLRLSVMNQS 136 Query: 121 IPI 123 + Sbjct: 137 GEL 139 >gi|168334551|ref|ZP_02692707.1| flagellar hook assembly protein [Epulopiscium sp. 'N.t. morphotype B'] Length = 266 Score = 87.3 bits (215), Expect = 7e-16, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 2/122 (1%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 Q + + + LG+DAF+ LLITQ+++QDP PM SE +AQ+A F+ +EQ + + Sbjct: 18 QNKPETREPDQDLGKDAFMSLLITQLQYQDPLSPMDNSEMMAQMAQFTALEQMMNVALAT 77 Query: 71 QELLKSNNLAQASSYIGKNI-TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129 + + + Y KN+ T SG V ++ + + E+ + I++ Sbjct: 78 NKQTALSMVGNFVEYSYKNLETGKTEYSSGKVEYVKTQGD-DALLGIGENEVKLADIIQV 136 Query: 130 SN 131 N Sbjct: 137 LN 138 >gi|302670725|ref|YP_003830685.1| flagellar hook capping protein FlgD [Butyrivibrio proteoclasticus B316] gi|302395198|gb|ADL34103.1| flagellar hook capping protein FlgD [Butyrivibrio proteoclasticus B316] Length = 237 Score = 87.3 bits (215), Expect = 7e-16, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 65/136 (47%), Gaps = 16/136 (11%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 N EV T +E + + +D+FLK+L+ Q+K+QDP EP +E + Q A F+Q+EQ Sbjct: 13 NGEVANTVKEDATKNATAGYDKDSFLKILVAQMKYQDPMEPTSNTEYINQYATFTQVEQL 72 Query: 64 VQMNSTLQELLKSNNLAQASSYIGKNITNAD--------GSISGVVNAIQVSSTGLTAIT 115 M +++ L++AS +GK + + GVV+ + ++ + Sbjct: 73 SNMANSM-------ALSRASEMVGKTVRVTQYNPDNGKTTEVVGVVDFVTYNAN-KAYLN 124 Query: 116 VDNTEIPITTGIRISN 131 ++ T + + + Sbjct: 125 IEGTNYNVEDVTEVFD 140 >gi|260767770|ref|ZP_05876705.1| flagellar basal-body rod modification protein FlgD [Vibrio furnissii CIP 102972] gi|260617279|gb|EEX42463.1| flagellar basal-body rod modification protein FlgD [Vibrio furnissii CIP 102972] gi|315179398|gb|ADT86312.1| flagellar basal body rod modification protein D [Vibrio furnissii NCTC 11218] Length = 235 Score = 87.3 bits (215), Expect = 7e-16, Method: Composition-based stats. Identities = 30/108 (27%), Positives = 57/108 (52%), Gaps = 9/108 (8%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 + + +++ K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MNS Sbjct: 24 KNKPTETTGKQDLKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNSQF 83 Query: 71 QEL---LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAIT 115 + L + SN QASS +G+++ + ++ GL A+ Sbjct: 84 ENLNSSMTSNQALQASSLVGRDVLVPGSA------GVKKDDAGLAAMV 125 >gi|262276418|ref|ZP_06054227.1| flagellar basal-body rod modification protein FlgD [Grimontia hollisae CIP 101886] gi|262220226|gb|EEY71542.1| flagellar basal-body rod modification protein FlgD [Grimontia hollisae CIP 101886] Length = 248 Score = 87.3 bits (215), Expect = 7e-16, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 3/91 (3%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL-- 73 K + L Q+ FL LL Q+ +QDP +P+ + +AQ+A F+ ++ +MN L Sbjct: 34 KVTGQTDLKQEDFLSLLTKQLANQDPFKPVDNEQMIAQMASFATVDGIGKMNEQFGSLNA 93 Query: 74 -LKSNNLAQASSYIGKNITNADGSISGVVNA 103 + S+ QASS +G+++ V Sbjct: 94 AMTSSQALQASSLVGQDVLVPGNEGFKSVEG 124 >gi|317051682|ref|YP_004112798.1| flagellar hook capping protein [Desulfurispirillum indicum S5] gi|316946766|gb|ADU66242.1| flagellar hook capping protein [Desulfurispirillum indicum S5] Length = 248 Score = 87.3 bits (215), Expect = 7e-16, Method: Composition-based stats. Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78 KK + +DAFL L+ITQ+++QDPT P S+ +AQ A FSQ+EQ M + + L+ Sbjct: 26 PKKEMDKDAFLHLMITQLRNQDPTNPQDNSQMIAQTAQFSQLEQLTNMTAAVDRLVAMQQ 85 Query: 79 LA---QASSYIGKNITNADGSI 97 A++YIG ++ Sbjct: 86 QTMNFNAAAYIGLEARALGNTV 107 >gi|260772273|ref|ZP_05881189.1| flagellar basal-body rod modification protein FlgD [Vibrio metschnikovii CIP 69.14] gi|260611412|gb|EEX36615.1| flagellar basal-body rod modification protein FlgD [Vibrio metschnikovii CIP 69.14] Length = 235 Score = 87.3 bits (215), Expect = 7e-16, Method: Composition-based stats. Identities = 26/83 (31%), Positives = 50/83 (60%), Gaps = 3/83 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 Q++ +++ ++ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN Sbjct: 24 QKKPTETTGQQELKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNGQF 83 Query: 71 QEL---LKSNNLAQASSYIGKNI 90 + L + SN QASS +G+++ Sbjct: 84 ESLNSAMTSNQALQASSLVGRDV 106 >gi|51246515|ref|YP_066399.1| basal-body rod modification protein FlgD [Desulfotalea psychrophila LSv54] gi|50877552|emb|CAG37392.1| related to basal-body rod modification protein (FlgD) [Desulfotalea psychrophila LSv54] Length = 248 Score = 87.3 bits (215), Expect = 7e-16, Method: Composition-based stats. Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 3/93 (3%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 S T+G+ FL LL+ Q+++QDP P + +E AQLA FS +EQ + +N + ++ S Sbjct: 26 SGKNSTMGKQEFLTLLVAQLQNQDPLNPDEGTEFTAQLAQFSSLEQLMSINKGMGNMITS 85 Query: 77 NNLAQASSY---IGKNITNADGSISGVVNAIQV 106 + + + IGK + I + ++ Sbjct: 86 TSNSDNIALLNTIGKEVLYYGDEIDFQGDPVEF 118 >gi|269796391|ref|YP_003315846.1| flagellar hook capping protein [Sanguibacter keddieii DSM 10542] gi|269098576|gb|ACZ23012.1| flagellar hook capping protein [Sanguibacter keddieii DSM 10542] Length = 186 Score = 86.9 bits (214), Expect = 7e-16, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 2/121 (1%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 S +KK+L + F+ LL+ Q+K+QDP+ PM +E +AQ + ME+ M T+ Sbjct: 24 TGANGASTAKKSLDNETFMTLLVAQLKYQDPSSPMDTTEMMAQTTQLASMEKLTTMTDTI 83 Query: 71 QELLKSNNLAQASSYIGKNI--TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128 E A++ +GK + T ADG++ V + + VD E+ + Sbjct: 84 AESFALQMRDAAATLLGKQVSYTEADGTVKTGVAQSVSYKYSVPMVVVDGVEVTLDAVQT 143 Query: 129 I 129 + Sbjct: 144 V 144 >gi|28897551|ref|NP_797156.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus RIMD 2210633] gi|153839686|ref|ZP_01992353.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus AQ3810] gi|260364610|ref|ZP_05777212.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus K5030] gi|260878285|ref|ZP_05890640.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus AN-5034] gi|260898115|ref|ZP_05906611.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus Peru-466] gi|260901952|ref|ZP_05910347.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus AQ4037] gi|5361007|gb|AAD42914.1|U12817_8 polar flagellar FlgD homolog [Vibrio parahaemolyticus] gi|28805763|dbj|BAC59040.1| polar flagellar FlgD [Vibrio parahaemolyticus RIMD 2210633] gi|149746796|gb|EDM57784.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus AQ3810] gi|308086108|gb|EFO35803.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus Peru-466] gi|308090177|gb|EFO39872.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus AN-5034] gi|308106778|gb|EFO44318.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus AQ4037] gi|308115091|gb|EFO52631.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus K5030] gi|328473454|gb|EGF44302.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus 10329] Length = 235 Score = 86.9 bits (214), Expect = 8e-16, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 3/83 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 ++ S K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+ Sbjct: 24 NKKAEGSTGKQDLKQEDFLSLLTKQLSQQDPFKPVSNDQMIAQMASFATVDGIGKMNTQF 83 Query: 71 QEL---LKSNNLAQASSYIGKNI 90 + L + SN QASS +G+++ Sbjct: 84 ESLNSSMTSNQALQASSLVGRDV 106 >gi|83816116|ref|YP_446707.1| basal-body rod modification protein FlgD [Salinibacter ruber DSM 13855] gi|294508643|ref|YP_003572702.1| Basal-body rod modification protein flgD [Salinibacter ruber M8] gi|83757510|gb|ABC45623.1| basal-body rod modification protein FlgD [Salinibacter ruber DSM 13855] gi|294344972|emb|CBH25750.1| Basal-body rod modification protein flgD [Salinibacter ruber M8] Length = 260 Score = 86.9 bits (214), Expect = 8e-16, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 59/123 (47%), Gaps = 14/123 (11%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE--- 72 + LG++ FLKLL TQ+++QDP+ PMK + AQLA FS +EQ ++ ++E Sbjct: 54 SQATSANLGKNDFLKLLTTQLQNQDPSNPMKGKDFAAQLAQFSSVEQLTNISGQIEEQGK 113 Query: 73 ----LLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128 L +S N + A+ IG+ + + ++ Q + G VD + Sbjct: 114 SDGALAQSINDSMATDLIGRTVKTSGNTL-------QWTGEGEATFGVDLERPASEATVT 166 Query: 129 ISN 131 I + Sbjct: 167 IRD 169 >gi|23099017|ref|NP_692483.1| flagellar basal body rod modification protein [Oceanobacillus iheyensis HTE831] gi|22777245|dbj|BAC13518.1| flagellar hook assembly protein [Oceanobacillus iheyensis HTE831] Length = 172 Score = 86.9 bits (214), Expect = 8e-16, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 68/132 (51%), Gaps = 12/132 (9%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 + + LG+D FLKLL+ Q+++QDPT+PM S+ ++Q+A FS +EQ + M++++ Sbjct: 11 NNQQKARVPSQELGKDEFLKLLMVQLQNQDPTKPMDDSQFMSQMATFSSLEQMMNMSNSI 70 Query: 71 QELLKSNNLA---QASSYIGKNIT-----NADGSISG----VVNAIQVSSTGLTAITVDN 118 + L+ ++ ++ Q S IG+ ++ G +G +V + + + Sbjct: 71 EMLVNNSLVSPVLQYSHMIGEEVSYMTFDEETGKETGIETSIVVGVTQNEGWAVFELENG 130 Query: 119 TEIPITTGIRIS 130 I T I++ Sbjct: 131 ERIYADTVIQVG 142 >gi|323498421|ref|ZP_08103417.1| flagellar basal body rod modification protein [Vibrio sinaloensis DSM 21326] gi|323316494|gb|EGA69509.1| flagellar basal body rod modification protein [Vibrio sinaloensis DSM 21326] Length = 236 Score = 86.9 bits (214), Expect = 9e-16, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 61/115 (53%), Gaps = 11/115 (9%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 + + +++ K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+ Sbjct: 25 KNKPTETTGKQDLKQEDFLSLLTKQLSQQDPFKPVSNDQMIAQMASFATVDGIGKMNNQF 84 Query: 71 QEL---LKSNNLAQASSYIGKN--------ITNADGSISGVVNAIQVSSTGLTAI 114 + L + SN QASS +G++ + DGS++ +VN Q + + Sbjct: 85 ETLNASMTSNQALQASSLVGRDVLIPGAAGVKKDDGSMAAMVNLPQAVDNLMVRV 139 >gi|168186124|ref|ZP_02620759.1| flagellar hook assembly protein FlgD [Clostridium botulinum C str. Eklund] gi|169295774|gb|EDS77907.1| flagellar hook assembly protein FlgD [Clostridium botulinum C str. Eklund] Length = 274 Score = 86.9 bits (214), Expect = 9e-16, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 12/116 (10%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 +N + T++ K + ++AFLK+L ++ +QDP +++ ++QLA FS +EQ Sbjct: 44 VNHYNSATRRGTKIVKKGNEMDKNAFLKILTAELTNQDPMNAKDSTQYISQLAQFSSLEQ 103 Query: 63 SVQMNSTLQELLKSNNLAQASSYIGKNITNA-----DGSISGVVNAIQVSSTGLTA 113 +NST+ + A S +GK + + G V ++ + Sbjct: 104 MANLNSTM-------SFNSAGSMVGKTVAMSSYDDYGRQYGGTVTNVRKDGDDIIL 152 >gi|119714999|ref|YP_921964.1| flagellar hook capping protein [Nocardioides sp. JS614] gi|119535660|gb|ABL80277.1| flagellar hook capping protein [Nocardioides sp. JS614] Length = 163 Score = 86.9 bits (214), Expect = 9e-16, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 56/124 (45%), Gaps = 4/124 (3%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 T + + + ++ FL L++ Q+++ DP P + E +AQ A F+ +E+ + Sbjct: 12 STGMYQPSTATSASDDKEMFLNLMVAQLRYHDPMNPADSGEFLAQNAQFTALEKMQDVAD 71 Query: 69 TLQELLKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITT 125 LL + AS +G+ +T D +SG+V ++ + G + VD + + Sbjct: 72 QTAALLATQISFGASGLVGRYVTYLDQDGAAVSGLVGSVTYDANG-PMLVVDGQNVTLGQ 130 Query: 126 GIRI 129 + Sbjct: 131 VQAV 134 >gi|327398497|ref|YP_004339366.1| flagellar hook capping protein [Hippea maritima DSM 10411] gi|327181126|gb|AEA33307.1| flagellar hook capping protein [Hippea maritima DSM 10411] Length = 226 Score = 86.9 bits (214), Expect = 9e-16, Method: Composition-based stats. Identities = 36/142 (25%), Positives = 72/142 (50%), Gaps = 14/142 (9%) Query: 1 MEINTEVNP-----TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55 M+I + N + + K T+ ++ FLKLL+ Q+++QDP PM + + + Sbjct: 1 MDIASIANQANIAESMNSDKVANPKATIDKEGFLKLLVAQLRYQDPLNPMNNDQFIQENT 60 Query: 56 VFSQMEQSVQMNSTLQELL---KSNNLAQASSYIGKNITNADGSI---SGVVNAIQVSST 109 +FSQ+EQ + M+ ++ + + K N A+SY+GK I+ + I S ++ + + + Sbjct: 61 MFSQLEQLMNMSKSMNKFMGDLKGNPKEYAASYLGKYISTGENKINVSSNYIDRVNFTLS 120 Query: 110 GLTAITVDNTEIPITTGIRISN 131 +T+ I + G I++ Sbjct: 121 KDAKVTI---HISNSKGEDIAD 139 >gi|320530203|ref|ZP_08031273.1| flagellar hook capping protein [Selenomonas artemidis F0399] gi|320137636|gb|EFW29548.1| flagellar hook capping protein [Selenomonas artemidis F0399] Length = 176 Score = 86.9 bits (214), Expect = 9e-16, Method: Composition-based stats. Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 21/142 (14%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 QE + +K LG+DAFL+LL+TQ+K+QDP +P S+ ++QLA FS +EQ + L Sbjct: 21 NQEKAANKKNDALGKDAFLQLLVTQMKYQDPLDPQDNSQYLSQLAQFSALEQMTNVAKGL 80 Query: 71 -------QELLKSNNLAQASSYIGK------NITNADGSIS-----GVVNAIQVSSTGLT 112 + S + Q S IG+ + DG ++ G + + ++ + Sbjct: 81 SDVQKVVDNINSSVLIGQLSGMIGQKAQWITQVKGEDGKMTKQSFEGKIIGVSITDGEPS 140 Query: 113 AITVDNTE---IPITTGIRISN 131 I N + + I+ +RI + Sbjct: 141 VIADVNGKTHQVKISELVRIGD 162 >gi|59712482|ref|YP_205258.1| flagellar basal body rod modification protein [Vibrio fischeri ES114] gi|197335727|ref|YP_002156701.1| flagellar basal body rod modification protein [Vibrio fischeri MJ11] gi|24459276|gb|AAL86629.1| FlgD [Vibrio fischeri ES114] gi|59480583|gb|AAW86370.1| flagellar hook capping protein FlgD [Vibrio fischeri ES114] gi|197317217|gb|ACH66664.1| flagellar basal body rod modification protein [Vibrio fischeri MJ11] Length = 236 Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 3/88 (3%) Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65 + + + K L Q+ FL LL Q+ QDP +P++ + +AQ+A F+ ++ + Sbjct: 20 SLQEANKTEKTTGGKNELKQEDFLSLLTKQLSQQDPFKPVENDQMIAQMASFATVDGIGK 79 Query: 66 MNSTLQEL---LKSNNLAQASSYIGKNI 90 MN+ L + SN QASS +G+++ Sbjct: 80 MNTQFDSLNSSMTSNQALQASSLVGRDV 107 >gi|104782844|ref|YP_609342.1| flagellar basal body rod modification protein [Pseudomonas entomophila L48] gi|95111831|emb|CAK16555.1| flagellar Basal-body rod modification protein FlgD [Pseudomonas entomophila L48] Length = 234 Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 37/112 (33%), Positives = 60/112 (53%), Gaps = 11/112 (9%) Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77 LG+DAFL+LL+TQ++HQ+P +P E VAQLA FS +E +NS++ + + S+ Sbjct: 36 NALGKDAFLQLLVTQMQHQNPLDPQDNGEFVAQLAQFSSLEGIQTLNSSVNSIITGMGSS 95 Query: 78 NLAQASSYIGKNI--------TNADGSISGVVNAIQVSSTGLTAITVDNTEI 121 QASS +G+++ + S +G V Q + G I + + Sbjct: 96 QALQASSLVGRSVIVQNEKAMVDTTKSFTGQVVVPQNITDGKVTIKDKDGNV 147 >gi|149188065|ref|ZP_01866360.1| flagellar basal body rod modification protein D [Vibrio shilonii AK1] gi|148838053|gb|EDL54995.1| flagellar basal body rod modification protein D [Vibrio shilonii AK1] Length = 235 Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 49/83 (59%), Gaps = 3/83 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 Q + ++ K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+ Sbjct: 24 QSKPEETTGKQDLKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNTQF 83 Query: 71 QEL---LKSNNLAQASSYIGKNI 90 + L + SN QASS +G+++ Sbjct: 84 ESLNSSMTSNQALQASSLVGRDV 106 >gi|283850851|ref|ZP_06368137.1| flagellar hook capping protein [Desulfovibrio sp. FW1012B] gi|283573774|gb|EFC21748.1| flagellar hook capping protein [Desulfovibrio sp. FW1012B] Length = 235 Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 36/91 (39%), Positives = 54/91 (59%), Gaps = 6/91 (6%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNL 79 LGQDAFL+LL+TQ+++QDP PM E VA+LA FS +EQ ++N+ + L L Sbjct: 28 LGQDAFLQLLVTQLQYQDPLNPMDDKEFVAELAQFSSLEQLTEINTGIDNLAIQGTQQQL 87 Query: 80 AQASSYIGKNITNADGSIS---GVVNAIQVS 107 A ++IGK I ++S G +A+ + Sbjct: 88 LGAVNFIGKTIEATGNAVSLADGKASAVTFT 118 >gi|126697825|ref|YP_001086722.1| putative basal-body rod modification protein [Clostridium difficile 630] gi|115249262|emb|CAJ67075.1| Basal-body rod modification protein FlgD [Clostridium difficile] Length = 202 Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 13/133 (9%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 T +D F+K+L+ Q+ +QDP P +E V+QLA F+ +E+ Sbjct: 39 GNQTVTDNGTPIIGQGDDADKDLFMKILVAQMGNQDPMNPQDPTEYVSQLAQFATLEKMS 98 Query: 65 QMNSTLQELLK-------SNNLAQASSYIGKNITNA-----DGSISGVVNAIQVSSTGLT 112 MN L LL ++ L+ A+S IGK + + D +I GVV + + + Sbjct: 99 AMNEKLDVLLALSNSTLINSALSMATSLIGKEVEVSGEEKEDENIVGVVKSTYIKDGEVH 158 Query: 113 A-ITVDNTEIPIT 124 + VD ++ + Sbjct: 159 LELEVDGSDKTVG 171 >gi|222100887|ref|YP_002535455.1| Basal-body rod modification protein FlgD [Thermotoga neapolitana DSM 4359] gi|221573277|gb|ACM24089.1| Basal-body rod modification protein FlgD [Thermotoga neapolitana DSM 4359] Length = 223 Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 64/119 (53%), Gaps = 6/119 (5%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 N + Q + + KTL +DAFL+LL+ +++ QDP EPM+ + ++QL+ + +EQ Sbjct: 7 NIYYSTLQGVRTNYTASKTLDKDAFLRLLLQELEMQDPLEPMETKDMISQLSQLTSLEQI 66 Query: 64 VQMNSTLQELLKSN---NLAQASSYIGKNITNADGSIS---GVVNAIQVSSTGLTAITV 116 + S +++ +++ N AQ +S IGK + + ++ G ++I + + + Sbjct: 67 TNLTSAVKDFVEAQTSVNPAQLASLIGKYVVVKNNEVNLKDGEADSIIFNLDEDANVVI 125 >gi|229524193|ref|ZP_04413598.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae bv. albensis VL426] gi|229337774|gb|EEO02791.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae bv. albensis VL426] Length = 235 Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 51/83 (61%), Gaps = 3/83 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 Q++ ++ +K+L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+ Sbjct: 24 QKKPDETTGQKSLKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNTQF 83 Query: 71 QEL---LKSNNLAQASSYIGKNI 90 + L + SN QASS +G+++ Sbjct: 84 ESLSSSMTSNQALQASSLVGRDV 106 >gi|225159024|ref|ZP_03725334.1| flagellar hook capping protein [Opitutaceae bacterium TAV2] gi|224802403|gb|EEG20665.1| flagellar hook capping protein [Opitutaceae bacterium TAV2] Length = 144 Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 32/110 (29%), Positives = 58/110 (52%), Gaps = 3/110 (2%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82 LGQ F KLL Q++ QDP P+ ++ +AQLA FS + QS + + + L + A Sbjct: 28 LGQADFFKLLSVQLQKQDPLNPVDDTQFLAQLAQFSALAQSEALVTQMGYLRADIQMQAA 87 Query: 83 SSYIGKNIT-NADGS-ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 + +GK +T +DG ++G V +I S + + +T ++ + ++ Sbjct: 88 AGLVGKEVTVVSDGELVTGTVTSIAADSD-AVYVKIGDTYYTYSSVVEVA 136 >gi|15642197|ref|NP_231829.1| flagellar basal body rod modification protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121586270|ref|ZP_01676060.1| basal-body rod modification protein FlgD [Vibrio cholerae 2740-80] gi|121726556|ref|ZP_01679805.1| basal-body rod modification protein FlgD [Vibrio cholerae V52] gi|147674438|ref|YP_001217715.1| flagellar basal body rod modification protein [Vibrio cholerae O395] gi|153213643|ref|ZP_01948916.1| basal-body rod modification protein FlgD [Vibrio cholerae 1587] gi|153817067|ref|ZP_01969734.1| basal-body rod modification protein FlgD [Vibrio cholerae NCTC 8457] gi|153820890|ref|ZP_01973557.1| basal-body rod modification protein FlgD [Vibrio cholerae B33] gi|153825362|ref|ZP_01978029.1| basal-body rod modification protein FlgD [Vibrio cholerae MZO-2] gi|153829341|ref|ZP_01982008.1| basal-body rod modification protein FlgD [Vibrio cholerae 623-39] gi|183179564|ref|ZP_02957775.1| basal-body rod modification protein FlgD [Vibrio cholerae MZO-3] gi|227082322|ref|YP_002810873.1| basal-body rod modification protein FlgD [Vibrio cholerae M66-2] gi|229507725|ref|ZP_04397230.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae BX 330286] gi|229512080|ref|ZP_04401559.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae B33] gi|229513842|ref|ZP_04403304.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae TMA 21] gi|229519216|ref|ZP_04408659.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae RC9] gi|229522147|ref|ZP_04411564.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae TM 11079-80] gi|229528797|ref|ZP_04418187.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae 12129(1)] gi|229607229|ref|YP_002877877.1| flagellar basal body rod modification protein [Vibrio cholerae MJ-1236] gi|254225800|ref|ZP_04919405.1| basal-body rod modification protein FlgD [Vibrio cholerae V51] gi|254849327|ref|ZP_05238677.1| basal-body rod modification protein FlgD [Vibrio cholerae MO10] gi|255747103|ref|ZP_05421048.1| flagellar basal-body rod modification protein FlgD [Vibrio cholera CIRS 101] gi|262161353|ref|ZP_06030463.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae INDRE 91/1] gi|262167776|ref|ZP_06035478.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae RC27] gi|262191690|ref|ZP_06049866.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae CT 5369-93] gi|297580844|ref|ZP_06942769.1| flagellar basal body rod modification protein [Vibrio cholerae RC385] gi|298500424|ref|ZP_07010229.1| flagellar basal body rod modification protein [Vibrio cholerae MAK 757] gi|9656754|gb|AAF95343.1| basal-body rod modification protein FlgD [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549536|gb|EAX59562.1| basal-body rod modification protein FlgD [Vibrio cholerae 2740-80] gi|121631009|gb|EAX63388.1| basal-body rod modification protein FlgD [Vibrio cholerae V52] gi|124115842|gb|EAY34662.1| basal-body rod modification protein FlgD [Vibrio cholerae 1587] gi|125621706|gb|EAZ50035.1| basal-body rod modification protein FlgD [Vibrio cholerae V51] gi|126512335|gb|EAZ74929.1| basal-body rod modification protein FlgD [Vibrio cholerae NCTC 8457] gi|126521682|gb|EAZ78905.1| basal-body rod modification protein FlgD [Vibrio cholerae B33] gi|146316321|gb|ABQ20860.1| basal-body rod modification protein FlgD [Vibrio cholerae O395] gi|148875182|gb|EDL73317.1| basal-body rod modification protein FlgD [Vibrio cholerae 623-39] gi|149741046|gb|EDM55115.1| basal-body rod modification protein FlgD [Vibrio cholerae MZO-2] gi|183012975|gb|EDT88275.1| basal-body rod modification protein FlgD [Vibrio cholerae MZO-3] gi|227010210|gb|ACP06422.1| basal-body rod modification protein FlgD [Vibrio cholerae M66-2] gi|227014094|gb|ACP10304.1| basal-body rod modification protein FlgD [Vibrio cholerae O395] gi|229332571|gb|EEN98057.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae 12129(1)] gi|229341072|gb|EEO06077.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae TM 11079-80] gi|229343905|gb|EEO08880.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae RC9] gi|229349023|gb|EEO13980.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae TMA 21] gi|229352045|gb|EEO16986.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae B33] gi|229355230|gb|EEO20151.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae BX 330286] gi|229369884|gb|ACQ60307.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae MJ-1236] gi|254845032|gb|EET23446.1| basal-body rod modification protein FlgD [Vibrio cholerae MO10] gi|255735505|gb|EET90905.1| flagellar basal-body rod modification protein FlgD [Vibrio cholera CIRS 101] gi|262023841|gb|EEY42540.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae RC27] gi|262028664|gb|EEY47318.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae INDRE 91/1] gi|262032429|gb|EEY50991.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae CT 5369-93] gi|297534670|gb|EFH73506.1| flagellar basal body rod modification protein [Vibrio cholerae RC385] gi|297541117|gb|EFH77171.1| flagellar basal body rod modification protein [Vibrio cholerae MAK 757] gi|327484717|gb|AEA79124.1| Flagellar basal-body rod modification protein FlgD [Vibrio cholerae LMA3894-4] Length = 235 Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 51/83 (61%), Gaps = 3/83 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 Q++ ++ +K+L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+ Sbjct: 24 QKKPDETTGQKSLKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNTQF 83 Query: 71 QEL---LKSNNLAQASSYIGKNI 90 + L + SN QASS +G+++ Sbjct: 84 ESLNSSMTSNQALQASSLVGRDV 106 >gi|163793270|ref|ZP_02187245.1| Flagellar hook capping protein [alpha proteobacterium BAL199] gi|159181072|gb|EDP65587.1| Flagellar hook capping protein [alpha proteobacterium BAL199] Length = 222 Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 36/100 (36%), Positives = 57/100 (57%), Gaps = 3/100 (3%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 M+ + ++ + + S S K + D FL LL TQ+K+QDP +PM SE V QL FS + Sbjct: 1 MDSVSPISTSGTKSSTSADKLSKDFDMFLTLLTTQLKNQDPLDPMDNSEMVNQLVQFSNV 60 Query: 61 EQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 EQ + N L+++ L S + A + SYIG+++ D + Sbjct: 61 EQQIAQNKNLEQMILLLNSQSAASSVSYIGRDVQFTDSTT 100 >gi|289666046|ref|ZP_06487627.1| flagellar basal body rod modification protein [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289670505|ref|ZP_06491580.1| flagellar basal body rod modification protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 221 Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 11/119 (9%) Query: 14 FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73 K + LGQ FLKL+ Q++HQDP +PM S + QLA FS ++ +N+ L Sbjct: 18 SKTPKKEDALGQADFLKLMTEQLQHQDPLKPMDNSAFLGQLAQFSTVQGIGDLNTKFSNL 77 Query: 74 ---LKSNNLAQASSYIGKNI--------TNADGSISGVVNAIQVSSTGLTAITVDNTEI 121 + S+ + + ++ +G N+ +A GS GVV A + + + Sbjct: 78 STSMSSDQVLKGAALVGHNVLVPSAQVAIDATGSAKGVVAATSAGTVNFEITDANGAFV 136 >gi|163802604|ref|ZP_02196496.1| flagellar basal body rod modification protein D [Vibrio sp. AND4] gi|159173687|gb|EDP58506.1| flagellar basal body rod modification protein D [Vibrio sp. AND4] Length = 235 Score = 86.1 bits (212), Expect = 1e-15, Method: Composition-based stats. Identities = 28/83 (33%), Positives = 49/83 (59%), Gaps = 3/83 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 ++ +S K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MNS Sbjct: 24 NKKTGESTGKQELKQEDFLSLLTKQLSQQDPFKPVGNDQMIAQMASFATVDGIGKMNSQF 83 Query: 71 QEL---LKSNNLAQASSYIGKNI 90 + L + SN QASS +G+++ Sbjct: 84 ENLNSSMTSNQALQASSLVGRDV 106 >gi|149178722|ref|ZP_01857305.1| probable basal-body rod modification protein FlgD [Planctomyces maris DSM 8797] gi|148842420|gb|EDL56800.1| probable basal-body rod modification protein FlgD [Planctomyces maris DSM 8797] Length = 145 Score = 86.1 bits (212), Expect = 1e-15, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 68/112 (60%), Gaps = 4/112 (3%) Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA 80 L ++F+KLLIT++++QDPTEP+ + +AQ++ +++ +++++ TL+E+ +L Sbjct: 29 NGLTAESFMKLLITELQNQDPTEPLGNEQLLAQISSMRELQSNIELSDTLKEITTGQSLT 88 Query: 81 QASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129 QA++ IGK + +G ++GVV V G + + + E+P++ + Sbjct: 89 QAAALIGKEVEGQEGQQNPVAGVVERAFVR-DGKSYVGIGAFELPVSAITSV 139 >gi|302185584|ref|ZP_07262257.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. syringae 642] Length = 229 Score = 86.1 bits (212), Expect = 1e-15, Method: Composition-based stats. Identities = 39/99 (39%), Positives = 62/99 (62%), Gaps = 6/99 (6%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 +N+ NPT + + S TLG+D+FL+LL+TQ+K+Q+P +P ++ VAQLA FS +E Sbjct: 16 LNSLQNPTP---TATNSTGTLGKDSFLQLLVTQMKNQNPLDPQDNTQFVAQLAQFSSLES 72 Query: 63 SVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSIS 98 + ST+ + KS+ QASS +G+++ GS S Sbjct: 73 MQNLTSTVDTIATSYKSSQALQASSLVGRSVIIDSGSTS 111 >gi|304437041|ref|ZP_07397004.1| flagellar hook capping protein [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369992|gb|EFM23654.1| flagellar hook capping protein [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 174 Score = 86.1 bits (212), Expect = 1e-15, Method: Composition-based stats. Identities = 41/141 (29%), Positives = 71/141 (50%), Gaps = 21/141 (14%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 Q + K LG+DAFL+LL+TQ+++QDP P +E ++QLA FS +EQ ++ L Sbjct: 27 NQAKAGKKDNSALGKDAFLQLLVTQMRYQDPLNPQDNAEYLSQLAQFSALEQMTNVSKGL 86 Query: 71 QELLK-------SNNLAQASSYIGKNI------TNADGSIS-----GVVNAIQVSSTGLT 112 +++ K S + Q SS IG+ I DG+++ G V + ++ + Sbjct: 87 EKVSKIVDNIDSSVLIGQLSSMIGQPIQWITETKGKDGAVTKQNFEGKVIGVSITDGAPS 146 Query: 113 AITVDNT---EIPITTGIRIS 130 I N ++ I+ +R+ Sbjct: 147 IIADVNGQSHKVQISEVVRVG 167 >gi|118443090|ref|YP_877981.1| flagellar hook assembly protein FlgD [Clostridium novyi NT] gi|118133546|gb|ABK60590.1| flagellar hook assembly protein FlgD [Clostridium novyi NT] Length = 274 Score = 86.1 bits (212), Expect = 1e-15, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 51/109 (46%), Gaps = 12/109 (11%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69 T++ K + + ++AFLK+L ++ +QDP +++ ++QLA FS +EQ +NST Sbjct: 51 TKRGTKIVKKGQEMDKNAFLKILTAELTNQDPMNAKDSTQYISQLAQFSSLEQMANLNST 110 Query: 70 LQELLKSNNLAQASSYIGKNIT-----NADGSISGVVNAIQVSSTGLTA 113 + + A + +GK + + G V ++ + Sbjct: 111 M-------SFNSAGNMVGKTVALSSYDDYGRQYGGTVTNVRKDGDDIIL 152 >gi|262404541|ref|ZP_06081096.1| flagellar basal-body rod modification protein FlgD [Vibrio sp. RC586] gi|262349573|gb|EEY98711.1| flagellar basal-body rod modification protein FlgD [Vibrio sp. RC586] Length = 235 Score = 86.1 bits (212), Expect = 1e-15, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 51/83 (61%), Gaps = 3/83 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 Q++ ++ +K+L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+ Sbjct: 24 QKKPDETTGQKSLKQEDFLSLLTKQLAQQDPFKPVGNDQMIAQMASFATVDGIGKMNTQF 83 Query: 71 QEL---LKSNNLAQASSYIGKNI 90 + L + SN QASS +G+++ Sbjct: 84 ESLNSSMTSNQALQASSLVGRDV 106 >gi|258621048|ref|ZP_05716082.1| flagellar basal body rod modification protein [Vibrio mimicus VM573] gi|258625276|ref|ZP_05720184.1| flagellar basal body rod modification protein [Vibrio mimicus VM603] gi|262166283|ref|ZP_06034020.1| flagellar basal-body rod modification protein FlgD [Vibrio mimicus VM223] gi|262170824|ref|ZP_06038502.1| flagellar basal-body rod modification protein FlgD [Vibrio mimicus MB-451] gi|258582449|gb|EEW07290.1| flagellar basal body rod modification protein [Vibrio mimicus VM603] gi|258586436|gb|EEW11151.1| flagellar basal body rod modification protein [Vibrio mimicus VM573] gi|261891900|gb|EEY37886.1| flagellar basal-body rod modification protein FlgD [Vibrio mimicus MB-451] gi|262025999|gb|EEY44667.1| flagellar basal-body rod modification protein FlgD [Vibrio mimicus VM223] Length = 235 Score = 85.8 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 51/83 (61%), Gaps = 3/83 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 Q++ ++ +K+L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+ Sbjct: 24 QKKPDETTGQKSLKQEDFLSLLTKQLAQQDPFKPVGNDQMIAQMASFATVDGIGKMNTQF 83 Query: 71 QEL---LKSNNLAQASSYIGKNI 90 + L + SN QASS +G+++ Sbjct: 84 ESLNSSMTSNQALQASSLVGRDV 106 >gi|76581470|gb|ABA50945.1| basal-body rod modification protein FlgD [Burkholderia pseudomallei 1710b] Length = 459 Score = 85.8 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 3/88 (3%) Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72 S S + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N+ L Sbjct: 236 ASSLSTTSAADLQTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTALTS 295 Query: 73 L---LKSNNLAQASSYIGKNITNADGSI 97 L L + QA+ IG N+ ++ Sbjct: 296 LSSQLTAGQQTQAAMLIGSNVLAPGNTV 323 >gi|332187922|ref|ZP_08389655.1| flagellar hook capping family protein [Sphingomonas sp. S17] gi|332012083|gb|EGI54155.1| flagellar hook capping family protein [Sphingomonas sp. S17] Length = 231 Score = 85.8 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 3/91 (3%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75 +K TL Q AFL LL Q+K+QDP PM ++ VAQ+A FS + +MN+TL + Sbjct: 29 PAKKSTTLDQSAFLTLLTAQLKNQDPFAPMDNTQMVAQMAQFSSVAGISEMNTTLASIAT 88 Query: 76 SNNLAQ---ASSYIGKNITNADGSISGVVNA 103 N A +Y+GK + + G + Sbjct: 89 KLNATTPADAMNYVGKTVLTEGTTAYGRTSG 119 >gi|256833234|ref|YP_003161961.1| flagellar hook capping protein [Jonesia denitrificans DSM 20603] gi|256686765|gb|ACV09658.1| flagellar hook capping protein [Jonesia denitrificans DSM 20603] Length = 161 Score = 85.8 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 60/123 (48%), Gaps = 4/123 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 K+ + + FL LL+TQ+K+QDP+ PM +E +AQ + MEQ + Sbjct: 21 TTPAVTRTPKQEMDGEMFLNLLVTQLKYQDPSSPMDTTEMMAQTTQLASMEQLTALTKVN 80 Query: 71 QELLKSNNLAQASSYIGKNITNAD---GSISGVVNAIQVSSTGLTAITVDNTEIPITTGI 127 QE +++ IG+++T + + +G V++I+ + + + + +P+ + Sbjct: 81 QESFALQMRVASAALIGQDVTFTNSHGDTTTGRVDSIRYDGE-VPTVIIGDEHVPLNSIA 139 Query: 128 RIS 130 I+ Sbjct: 140 GIT 142 >gi|327480019|gb|AEA83329.1| flagellar basal body rod modification protein [Pseudomonas stutzeri DSM 4166] Length = 227 Score = 85.8 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 53/89 (59%), Gaps = 3/89 (3%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 + ++ Q + LG++ FL+LL+ Q+ +Q+P EP + E + QLA FS +E Sbjct: 12 SILDQYQFGEKREAKGNDLGKNEFLELLVAQLNNQNPLEPQENGEFIGQLAQFSTVEGVE 71 Query: 65 QMNSTLQELL---KSNNLAQASSYIGKNI 90 ++NS++Q +L +S+ QASS +G+ + Sbjct: 72 KLNSSMQTILSGYQSSQALQASSLVGRKV 100 >gi|209695763|ref|YP_002263693.1| flagellar basal body rod modification protein [Aliivibrio salmonicida LFI1238] gi|208009716|emb|CAQ80020.1| flagellar basal-body rod protein FlgD [Aliivibrio salmonicida LFI1238] Length = 236 Score = 85.8 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 3/88 (3%) Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65 + + + K L Q+ FL LL Q+ QDP++P++ + +AQ+A F+ ++ + Sbjct: 20 SLQEANKPEKTTGGKNELKQEDFLALLTKQLSQQDPSKPVENDQMIAQMASFATVDGIGK 79 Query: 66 MNSTLQEL---LKSNNLAQASSYIGKNI 90 MN L + SN QASS +G+++ Sbjct: 80 MNKQFDSLNTSMTSNQALQASSLVGRDV 107 >gi|77460470|ref|YP_349977.1| flagellar basal body rod modification protein [Pseudomonas fluorescens Pf0-1] gi|77384473|gb|ABA75986.1| flagellar biosynthesis protein, initiation of hook assembly [Pseudomonas fluorescens Pf0-1] Length = 242 Score = 85.8 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 61/118 (51%), Gaps = 3/118 (2%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 + + + LG+DAFL+LL+TQ+K+Q+P +P S VAQLA FS +E +NST+ Sbjct: 32 ASATNSATGGQALGKDAFLQLLVTQLKNQNPLDPQDNSAFVAQLAQFSSLEGITTLNSTV 91 Query: 71 QEL---LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITT 125 L S+ QASS +G+N+ + + ++ T ++ + IT Sbjct: 92 SSLAGNYNSSQALQASSLVGRNVIVQTNTAQLDDPSKGLTGTATVPSSIAGGTVTITD 149 >gi|171320707|ref|ZP_02909720.1| flagellar hook capping protein [Burkholderia ambifaria MEX-5] gi|171094034|gb|EDT39132.1| flagellar hook capping protein [Burkholderia ambifaria MEX-5] Length = 135 Score = 85.8 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 14 FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73 + L + L++++TQ+ +QDP +P+ E V+QLA F+ +EQS Q+ + + +L Sbjct: 12 NGRQADPSGLDLQSLLRIIVTQLTYQDPLKPVDNYEFVSQLAQFTSLEQSRQIAAKIDDL 71 Query: 74 LKSNNLAQASSYIGKNI--TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 L + Q +G+ + G+++G+V + G +T+++ +S Sbjct: 72 LSVQSATQTIGLLGRKVDIRGDAGTMTGIVKGVSFK-DGEPKLTIESENGQFLADATVS 129 >gi|220913725|ref|YP_002489034.1| flagellar hook capping protein [Arthrobacter chlorophenolicus A6] gi|219860603|gb|ACL40945.1| flagellar hook capping protein [Arthrobacter chlorophenolicus A6] Length = 138 Score = 85.8 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 65/122 (53%), Gaps = 2/122 (1%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 Q + + ++L D F+KLL+TQ+K+QDP PM ++ +AQ S ME+ ++++ Sbjct: 12 QTGNAARQPVQSLDSDTFMKLLVTQLKYQDPGAPMDTNQMMAQSVQLSMMEKMTELSTGA 71 Query: 71 QELLKSNNLAQASSYIGKNI--TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128 +E A+ +G + T DG+ + + +TG+ +TV N+++P+ + Sbjct: 72 KESFSLQMRTAAAQIVGSEVAYTLPDGTAGSGIASAVSFTTGVPVVTVGNSKVPLDSISG 131 Query: 129 IS 130 IS Sbjct: 132 IS 133 >gi|261211323|ref|ZP_05925611.1| flagellar basal-body rod modification protein FlgD [Vibrio sp. RC341] gi|260839278|gb|EEX65904.1| flagellar basal-body rod modification protein FlgD [Vibrio sp. RC341] Length = 235 Score = 85.8 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 51/83 (61%), Gaps = 3/83 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 Q++ ++ +K+L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+ Sbjct: 24 QKKPDETTGQKSLKQEDFLSLLTKQLAQQDPFKPVGNDQMIAQMASFATVDGIGKMNTQF 83 Query: 71 QEL---LKSNNLAQASSYIGKNI 90 + L + SN QASS +G+++ Sbjct: 84 ESLNSSMTSNQALQASSLVGRDV 106 >gi|56698286|ref|YP_168659.1| flagellar basal body rod modification protein [Ruegeria pomeroyi DSS-3] gi|56680023|gb|AAV96689.1| basal-body rod modification protein FlgD [Ruegeria pomeroyi DSS-3] Length = 222 Score = 85.8 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 3/91 (3%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 + Q + K + D F+++L TQ K+Q+P EP+ +SE AQLA FS +EQ Sbjct: 11 GATSQAPQTTTPEKRSLSSDFDTFIRMLTTQAKYQNPLEPLDSSEYAAQLAQFSMVEQQT 70 Query: 65 QMNSTLQEL---LKSNNLAQASSYIGKNITN 92 + N TL L L + ++A+ S++IGK + Sbjct: 71 KTNDTLTALVEKLGATDMAKLSNWIGKEVRA 101 >gi|27363706|ref|NP_759234.1| flagellar basal body rod modification protein [Vibrio vulnificus CMCP6] gi|37679146|ref|NP_933755.1| flagellar basal body rod modification protein [Vibrio vulnificus YJ016] gi|320157110|ref|YP_004189489.1| flagellar basal-body rod modification protein FlgD [Vibrio vulnificus MO6-24/O] gi|27359822|gb|AAO08761.1| Flagellar basal-body rod modification protein flgD [Vibrio vulnificus CMCP6] gi|37197888|dbj|BAC93726.1| flagellar hook capping protein FlgD [Vibrio vulnificus YJ016] gi|319932422|gb|ADV87286.1| flagellar basal-body rod modification protein FlgD [Vibrio vulnificus MO6-24/O] Length = 235 Score = 85.8 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 50/83 (60%), Gaps = 3/83 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 ++ +++ K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MNS Sbjct: 24 SKKPTETTGKQELKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNSQF 83 Query: 71 QEL---LKSNNLAQASSYIGKNI 90 + L + SN QASS +G+++ Sbjct: 84 ESLNSSMTSNQALQASSLVGRDV 106 >gi|311694360|gb|ADP97233.1| flagellar hook capping protein [marine bacterium HP15] Length = 225 Score = 85.8 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 31/113 (27%), Positives = 64/113 (56%), Gaps = 13/113 (11%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---L 74 + LG++ F++L++ Q+K+Q+P EP + E ++QLA FS +E+ ++ T++++ Sbjct: 25 QGTSELGRNEFMELMLAQLKNQNPLEPQENGEFISQLAQFSSLEEMQNLSGTVEDVVGQF 84 Query: 75 KSNNLAQASSYIGKNI--------TNADGSISGVVNAIQVSSTGLTAITVDNT 119 +S QAS+ +GK + A+G I+G + +STG ++++ Sbjct: 85 RSTQALQASAMVGKTVLAPSQIGILGAEGEITGTIQ--VPASTGGLRLSIEGQ 135 >gi|323495378|ref|ZP_08100455.1| flagellar basal body rod modification protein [Vibrio brasiliensis LMG 20546] gi|323310301|gb|EGA63488.1| flagellar basal body rod modification protein [Vibrio brasiliensis LMG 20546] Length = 237 Score = 85.8 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 61/115 (53%), Gaps = 11/115 (9%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 + + +++ K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+ Sbjct: 26 KNKPNETTGKQDLKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNNQF 85 Query: 71 QEL---LKSNNLAQASSYIGKN--------ITNADGSISGVVNAIQVSSTGLTAI 114 + L + SN QASS +G++ + N DGS++ +V Q + + Sbjct: 86 ETLNASMTSNQALQASSLVGRDVLVPGAAGVKNDDGSMAAMVKLPQAVDNLMVRV 140 >gi|254508413|ref|ZP_05120533.1| basal-body rod modification protein FlgD [Vibrio parahaemolyticus 16] gi|219548623|gb|EED25628.1| basal-body rod modification protein FlgD [Vibrio parahaemolyticus 16] Length = 236 Score = 85.8 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 60/115 (52%), Gaps = 11/115 (9%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 + + +++ K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+ Sbjct: 25 KNKPNETTGKQDLKQEDFLSLLTKQLSQQDPFKPVSNDQMIAQMASFATVDGIGKMNNQF 84 Query: 71 QEL---LKSNNLAQASSYIGKN--------ITNADGSISGVVNAIQVSSTGLTAI 114 + L + SN QASS +G++ + DGS++ +V Q + I Sbjct: 85 ESLNASMTSNQALQASSLVGRDVLIPGAAGVKKDDGSMAAMVKLPQAVDNLMVRI 139 >gi|260432283|ref|ZP_05786254.1| flagellar basal body rod modification protein [Silicibacter lacuscaerulensis ITI-1157] gi|260416111|gb|EEX09370.1| flagellar basal body rod modification protein [Silicibacter lacuscaerulensis ITI-1157] Length = 221 Score = 85.4 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 3/87 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 Q K S + FLK+L Q ++QDP EP+ +SE AQLA FS +EQ VQ N L Sbjct: 16 QSATQKKTSGLASDFETFLKMLTAQARNQDPLEPLDSSEYAAQLAQFSMVEQQVQTNELL 75 Query: 71 QEL---LKSNNLAQASSYIGKNITNAD 94 L L + NL + +++IGK++ + Sbjct: 76 DGLAGTLSAANLTEMAAWIGKDVRVSS 102 >gi|148554190|ref|YP_001261772.1| flagellar hook capping protein [Sphingomonas wittichii RW1] gi|148499380|gb|ABQ67634.1| flagellar hook capping protein [Sphingomonas wittichii RW1] Length = 226 Score = 85.4 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 64/122 (52%), Gaps = 11/122 (9%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 + KS ++L Q+ FLKLL TQ++ QDP P+ ++ VAQ+A FSQ +MN +L Sbjct: 19 SSTTTTKKSNESLSQNDFLKLLTTQMQTQDPFNPVDNTQMVAQMAQFSQTTGIAEMNQSL 78 Query: 71 QELLKSNNLAQ---ASSYIGKNIT--------NADGSISGVVNAIQVSSTGLTAITVDNT 119 + +++S ++ A+++IGK ADGS +G V +S ++ + Sbjct: 79 KSMVQSLQQSRVADAANWIGKAALLPSKAASALADGSFAGNVTLPDAASRVDISLVDGSG 138 Query: 120 EI 121 + Sbjct: 139 TV 140 >gi|239906012|ref|YP_002952751.1| flagellar basal-body rod modification protein FlgD [Desulfovibrio magneticus RS-1] gi|239795876|dbj|BAH74865.1| flagellar basal-body rod modification protein FlgD [Desulfovibrio magneticus RS-1] Length = 232 Score = 85.4 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 34/91 (37%), Positives = 54/91 (59%), Gaps = 6/91 (6%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS---TLQELLKSNNL 79 LG DAFL+LL+TQ+++QDP +PM E VA+LA FS +EQ ++NS L L + + Sbjct: 27 LGMDAFLQLLVTQLQYQDPLDPMDDKEFVAELAQFSSLEQLTEINSGIEGLSTLTQEQQM 86 Query: 80 AQASSYIGKNITNADGSIS---GVVNAIQVS 107 A ++IGK I +++ G ++ + Sbjct: 87 IGAVNFIGKTIEANGTAVNVEDGAATSVTFT 117 >gi|292670235|ref|ZP_06603661.1| flagellar Basal-body rod modification protein FlgD [Selenomonas noxia ATCC 43541] gi|292648187|gb|EFF66159.1| flagellar Basal-body rod modification protein FlgD [Selenomonas noxia ATCC 43541] Length = 174 Score = 85.4 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 21/134 (15%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL------- 70 K LG+DAFL+LL+TQ+K+QDP +P SE ++QLA FS +EQ ++ L Sbjct: 34 KRNDALGKDAFLQLLVTQMKYQDPLDPQDNSEYLSQLAQFSALEQMTNVSKGLSEVSKIV 93 Query: 71 QELLKSNNLAQASSYIGKNI------TNADG-----SISGVVNAIQVSSTGLTAITVDNT 119 + S + Q SS IG+ + DG S G V + ++ + I Sbjct: 94 DNINSSVLIGQLSSMIGQPVQWITETKGEDGQLSKQSFEGKVIGVSITDGTPSIIADVGG 153 Query: 120 E---IPITTGIRIS 130 + + I+ +RI Sbjct: 154 KTHQVQISKVVRIG 167 >gi|325921023|ref|ZP_08182905.1| flagellar hook capping protein [Xanthomonas gardneri ATCC 19865] gi|325548505|gb|EGD19477.1| flagellar hook capping protein [Xanthomonas gardneri ATCC 19865] Length = 223 Score = 85.4 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 11/124 (8%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 T S K +++LGQ FLKL+ Q++HQDP +PM+ S + QLA FS ++ +N+ Sbjct: 15 STSSAASTKKKEESLGQADFLKLMTEQLQHQDPLKPMENSAFLGQLAQFSTVQGIGDLNT 74 Query: 69 TLQEL---LKSNNLAQASSYIGKNI--------TNADGSISGVVNAIQVSSTGLTAITVD 117 + + S+ + + ++ +G N+ + S GVV A + + Sbjct: 75 KVGNFSDSMNSDQVLKGAALVGHNVLVPSAQVAIDTTNSAKGVVAATAAGTVNFEITDAN 134 Query: 118 NTEI 121 T + Sbjct: 135 GTFV 138 >gi|156973585|ref|YP_001444492.1| flagellar basal body rod modification protein [Vibrio harveyi ATCC BAA-1116] gi|156525179|gb|ABU70265.1| hypothetical protein VIBHAR_01288 [Vibrio harveyi ATCC BAA-1116] Length = 235 Score = 85.4 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 28/83 (33%), Positives = 49/83 (59%), Gaps = 3/83 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 ++ +S K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MNS Sbjct: 24 NKKTEESTGKQDLKQEDFLSLLTKQLSQQDPFKPVGNDQMIAQMASFATVDGIGKMNSQF 83 Query: 71 QEL---LKSNNLAQASSYIGKNI 90 + L + SN QASS +G+++ Sbjct: 84 ESLNSSMTSNQALQASSLVGRDV 106 >gi|229172399|ref|ZP_04299958.1| Flagellar hook assembly protein [Bacillus cereus MM3] gi|228610870|gb|EEK68133.1| Flagellar hook assembly protein [Bacillus cereus MM3] Length = 195 Score = 85.4 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 6/125 (4%) Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72 + + +D FLKL + + QDP M ++ + Q A S MEQ M + + Sbjct: 42 STGTQNTPGIMNKDDFLKLFLASFQQQDPFNAMDTNQMMNQTAQLSLMEQVQNMTKAVDK 101 Query: 73 L---LKSNNLAQASSYIGKNIT---NADGSISGVVNAIQVSSTGLTAITVDNTEIPITTG 126 L + S L ++GK + + + G V ++++ + V N + Sbjct: 102 LQATMYSTALDGGMKFLGKYVKGVNDKGEKVFGQVETVRLAENNDVQLIVGNQVVSTRFV 161 Query: 127 IRISN 131 R+S+ Sbjct: 162 ERVSD 166 >gi|153834466|ref|ZP_01987133.1| flagellar basal body rod modification protein [Vibrio harveyi HY01] gi|269961598|ref|ZP_06175960.1| flagellar basal body rod modification protein [Vibrio harveyi 1DA3] gi|148869162|gb|EDL68194.1| flagellar basal body rod modification protein [Vibrio harveyi HY01] gi|269833639|gb|EEZ87736.1| flagellar basal body rod modification protein [Vibrio harveyi 1DA3] Length = 235 Score = 85.4 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 28/83 (33%), Positives = 49/83 (59%), Gaps = 3/83 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 ++ +S K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MNS Sbjct: 24 NKKTEESTGKQDLKQEDFLSLLTKQLSQQDPFKPVGNDQMIAQMASFATVDGIGKMNSQF 83 Query: 71 QEL---LKSNNLAQASSYIGKNI 90 + L + SN QASS +G+++ Sbjct: 84 ESLNSSMTSNQALQASSLVGRDV 106 >gi|70731824|ref|YP_261566.1| flagellar basal body rod modification protein [Pseudomonas fluorescens Pf-5] gi|68346123|gb|AAY93729.1| basal-body rod modification protein FlgD [Pseudomonas fluorescens Pf-5] Length = 242 Score = 85.4 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 39/125 (31%), Positives = 70/125 (56%), Gaps = 4/125 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 NT + + + K++LG+DAFLKLL+TQ+ +Q+P +P S VAQLA FS +E Sbjct: 25 NTSADGLAAATNSATGKQSLGKDAFLKLLVTQLNNQNPLDPQDNSAFVAQLAQFSTLEGI 84 Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120 +NS++ + KS+ QASS +G+++ G+ V + ++ + +V++ Sbjct: 85 TTLNSSVNAITGNYKSSQALQASSLVGRSVIVQTGTTQ-VDTSKSMTGSVTVPSSVNSVT 143 Query: 121 IPITT 125 + +T Sbjct: 144 VTVTD 148 >gi|255305279|ref|ZP_05349451.1| putative basal-body rod modification protein [Clostridium difficile ATCC 43255] Length = 202 Score = 85.4 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 13/129 (10%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 T +D F+K+L+ Q+ +QDP P +E V+QLA F+ +E+ Sbjct: 39 GNQTVTDNGTPIIGQGDDADKDLFMKILVAQMGNQDPMNPQDPTEYVSQLAQFATLEKMS 98 Query: 65 QMNSTLQELLK-------SNNLAQASSYIGKNITNA-----DGSISGVVNAIQVSSTGLT 112 MN L LL ++ L+ A+S IGK + + + +I GVV + + + Sbjct: 99 AMNEKLDVLLALSNSTLINSALSMATSLIGKEVEVSGEEKENENIVGVVKSTYIKDGEVH 158 Query: 113 A-ITVDNTE 120 + VD ++ Sbjct: 159 LELEVDGSD 167 >gi|149912819|ref|ZP_01901353.1| Possible FlgD protein [Roseobacter sp. AzwK-3b] gi|149813225|gb|EDM73051.1| Possible FlgD protein [Roseobacter sp. AzwK-3b] Length = 233 Score = 85.4 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 57/134 (42%), Gaps = 9/134 (6%) Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65 + + K + + FLK+L Q+++QDP P+++++ QLA FS +EQ V+ Sbjct: 22 SASANTTAEAPPKPALSSDFETFLKMLTAQMRNQDPLNPVESADFAVQLATFSTVEQQVR 81 Query: 66 MNSTLQEL---LKSNNLAQASSYIGKN------ITNADGSISGVVNAIQVSSTGLTAITV 116 N L+ L + + ++Q S ++G + ++ V + ++ Sbjct: 82 TNDLLETLGDRMGAMGMSQLSGWVGMEARAIAPVQLDGAPVTLTVPPVPLADAAQIVARD 141 Query: 117 DNTEIPITTGIRIS 130 I + + I Sbjct: 142 STGTIVQRSDVSIE 155 >gi|296531798|ref|ZP_06894614.1| flagellar basal body rod modification protein FlgD [Roseomonas cervicalis ATCC 49957] gi|296267872|gb|EFH13683.1| flagellar basal body rod modification protein FlgD [Roseomonas cervicalis ATCC 49957] Length = 231 Score = 85.4 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 4/98 (4%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 T + + ++ + D FLKLL Q++ QDP P ++ VAQLA FSQ+EQ Sbjct: 15 TNLAASGAPTAQLPGAGSPDFDRFLKLLTAQLRFQDPMSPTDPTQFVAQLAQFSQVEQQT 74 Query: 65 QMNSTLQ----ELLKSNNLAQASSYIGKNITNADGSIS 98 + N+ LQ L +LA+ ++ +GK + ++S Sbjct: 75 KTNALLQGIAETLSGQASLAENAALLGKAVRTQSETVS 112 >gi|251778352|ref|ZP_04821272.1| flagellar hook assembly protein FlgD [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082667|gb|EES48557.1| flagellar hook assembly protein FlgD [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 321 Score = 85.4 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 4/106 (3%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 T + SKS + +++FLKLL Q+ + DPT ++ V Q+A F+ MEQ +N Sbjct: 33 TTDRGTPISKSGQEFDKNSFLKLLSAQLSNLDPTSDQDSTAYVTQMAQFAAMEQMYNLND 92 Query: 69 TLQELLKSNNLAQASSYIGKNITNADGS-ISGVVNAIQVSSTGLTA 113 T+ + + ++ ++ NADG +G++ + + G Sbjct: 93 TMSTFAHQQLVGKGATM---DLINADGEYYTGIIRGVSKDNYGTYV 135 >gi|254785370|ref|YP_003072799.1| flagellar basal-body rod modification protein FlgD [Teredinibacter turnerae T7901] gi|237687333|gb|ACR14597.1| flagellar basal-body rod modification protein FlgD [Teredinibacter turnerae T7901] Length = 238 Score = 85.0 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 3/84 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 + + LGQ AFL+L+ITQ+++QDP P + +E +AQLA FS +E ++N+ Sbjct: 18 ANKTKEEPKSNELGQSAFLELMITQMENQDPLSPQENTEFIAQLAQFSSVEALDKLNNNF 77 Query: 71 QELLKS---NNLAQASSYIGKNIT 91 + N QAS+ +G+++T Sbjct: 78 DSFTNNFMANQALQASTLVGRSVT 101 >gi|21231398|ref|NP_637315.1| flagellar basal body rod modification protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768549|ref|YP_243311.1| flagellar basal body rod modification protein [Xanthomonas campestris pv. campestris str. 8004] gi|188991642|ref|YP_001903652.1| flagellar basal body rod modification protein [Xanthomonas campestris pv. campestris str. B100] gi|21113064|gb|AAM41239.1| flagellar protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573881|gb|AAY49291.1| flagellar protein [Xanthomonas campestris pv. campestris str. 8004] gi|167733402|emb|CAP51603.1| unnamed protein product [Xanthomonas campestris pv. campestris] Length = 221 Score = 85.0 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 16/136 (11%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 +K + LGQ FLKL+ Q++HQDP +PM+ S + QLA FS ++ +N+ + Sbjct: 15 TTSSKVAKKEDALGQADFLKLMTEQLQHQDPLKPMENSAFLGQLAQFSTVQGIGDLNTKV 74 Query: 71 QEL---LKSNNLAQASSYIGKNI--------TNADGSISGVVNA-----IQVSSTGLTAI 114 + S+ + + ++ +G N+ +A GS GVV A + T Sbjct: 75 GNFSDSMNSDQVLKGAALVGHNVLVPSAQVAIDATGSAKGVVAATSAGFVNFEITDANGT 134 Query: 115 TVDNTEIPITTGIRIS 130 V +P + +S Sbjct: 135 FVKQLSVPASAAGEVS 150 >gi|187934832|ref|YP_001885047.1| flagellar hook assembly protein FlgD [Clostridium botulinum B str. Eklund 17B] gi|187722985|gb|ACD24206.1| flagellar hook assembly protein FlgD [Clostridium botulinum B str. Eklund 17B] Length = 321 Score = 85.0 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 4/106 (3%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 T + SKS + +++FLKLL Q+ + DPT ++ V Q+A F+ MEQ +N Sbjct: 33 TTDRGTPISKSGQEFDKNSFLKLLSAQLSNLDPTSDQDSTAYVTQMAQFAAMEQMYNLND 92 Query: 69 TLQELLKSNNLAQASSYIGKNITNADGS-ISGVVNAIQVSSTGLTA 113 T+ + + ++ ++ NADG +G++ + + G Sbjct: 93 TMSTFAHQQLVGKGATM---DLINADGEYYTGIIRGVSKDNYGTYV 135 >gi|188588066|ref|YP_001920208.1| flagellar hook assembly protein FlgD [Clostridium botulinum E3 str. Alaska E43] gi|188498347|gb|ACD51483.1| flagellar hook assembly protein FlgD [Clostridium botulinum E3 str. Alaska E43] Length = 321 Score = 85.0 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 4/106 (3%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 T + SKS + +++FLKLL Q+ + DPT ++ V Q+A F+ MEQ +N Sbjct: 33 TTDRGTPISKSGQEFDKNSFLKLLSAQLSNLDPTSDQDSTAYVTQMAQFAAMEQMYNLND 92 Query: 69 TLQELLKSNNLAQASSYIGKNITNADGS-ISGVVNAIQVSSTGLTA 113 T+ + + ++ ++ NADG +G++ + + G Sbjct: 93 TMSTFAHQQLVGKGATM---DLINADGEYYTGIIRGVSKDNYGTYV 135 >gi|148266216|ref|YP_001232922.1| flagellar hook capping protein [Geobacter uraniireducens Rf4] gi|146399716|gb|ABQ28349.1| flagellar hook capping protein [Geobacter uraniireducens Rf4] Length = 221 Score = 85.0 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 32/97 (32%), Positives = 53/97 (54%), Gaps = 3/97 (3%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 + N + + K + +D FLKL +TQ+++QDP P +S+ ++QLA +Q+EQ+ Sbjct: 6 SASNDSTAAAAAMKKATGMNKDDFLKLFVTQLQNQDPMNPQDSSQFISQLAQLTQVEQAY 65 Query: 65 QMNSTLQELLKSNN---LAQASSYIGKNITNADGSIS 98 NS LQ++L N A S+IGK + +S Sbjct: 66 NTNSNLQDMLNQANNTTTLSAVSFIGKEVVAPGAQVS 102 >gi|330961195|gb|EGH61455.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 214 Score = 85.0 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 37/99 (37%), Positives = 61/99 (61%), Gaps = 6/99 (6%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 +NT NPT + + S TLG+D+FL+LL+TQ+K+Q+P +P ++ VAQLA FS +E Sbjct: 1 MNTLQNPTP---TATNSTGTLGKDSFLQLLVTQMKNQNPLDPQDNTQFVAQLAQFSSLES 57 Query: 63 SVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSIS 98 + +T+ + KS+ QASS +G+++ S + Sbjct: 58 MQNLTTTVDTIASSYKSSQALQASSLVGRSVIIDSSSTA 96 >gi|170722893|ref|YP_001750581.1| flagellar basal body rod modification protein [Pseudomonas putida W619] gi|169760896|gb|ACA74212.1| flagellar hook capping protein [Pseudomonas putida W619] Length = 235 Score = 85.0 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 30/89 (33%), Positives = 52/89 (58%), Gaps = 3/89 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 + + LG+DAFL+LL+TQ++HQ+P +P + E VAQLA FS +E +N ++ Sbjct: 27 ATDTASKTGTDALGKDAFLQLLVTQMQHQNPLDPQENGEFVAQLAQFSSLEGITSLNESV 86 Query: 71 QEL---LKSNNLAQASSYIGKNITNADGS 96 + + S+ QASS +G+++ + Sbjct: 87 SSITNAMASSQALQASSLVGRSVVVQNDK 115 >gi|78047587|ref|YP_363762.1| flagellar basal body rod modification protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78036017|emb|CAJ23708.1| flagellar hook capping protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 221 Score = 85.0 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 16/136 (11%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 + +K ++ LGQ FLKL+ Q++HQDP +PM+ S + QLA FS ++ +N+ + Sbjct: 15 STSSTVAKKEEALGQADFLKLMTEQLQHQDPLKPMENSAFLGQLAQFSTVQGIGDLNTKV 74 Query: 71 QEL---LKSNNLAQASSYIGKNI--------TNADGSISGVVNA-----IQVSSTGLTAI 114 + S+ + + ++ +G N+ +A GS GVV A + T Sbjct: 75 SNFSDSMNSDQVLKGAALVGHNVLVPSAQVAIDATGSAKGVVAATSAGFVNFEITDANGT 134 Query: 115 TVDNTEIPITTGIRIS 130 V +P + +S Sbjct: 135 FVKQISVPASAAGEVS 150 >gi|172057881|ref|YP_001814341.1| flagellar hook capping protein [Exiguobacterium sibiricum 255-15] gi|171990402|gb|ACB61324.1| flagellar hook capping protein [Exiguobacterium sibiricum 255-15] Length = 156 Score = 85.0 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 68/137 (49%), Gaps = 10/137 (7%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 N + + +K S ++ +D F+K+LI Q+ +QDPT PM+ E ++Q+A FS +EQ Sbjct: 7 NDASSYQLPDKTKVPSSNSMDKDMFMKILIAQLSNQDPTAPMEDKEFISQMAQFSSLEQM 66 Query: 64 VQMNSTLQELLKSN---NLAQASSYIGKNITNADGSISGVVNAIQVSST-----GLTAIT 115 + ++ ++ + L S+ IG ++ +++ V+ST + ++ Sbjct: 67 QSIGKGIETMMLNQHAAALMNYSNLIGNKVSYESETVTKDATGADVTSTVKETANVLSVK 126 Query: 116 VDNTEIP--ITTGIRIS 130 D +I ++ G +S Sbjct: 127 RDGVDILAELSNGKSVS 143 >gi|320354324|ref|YP_004195663.1| flagellar hook capping protein [Desulfobulbus propionicus DSM 2032] gi|320122826|gb|ADW18372.1| flagellar hook capping protein [Desulfobulbus propionicus DSM 2032] Length = 226 Score = 85.0 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 3/81 (3%) Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA 80 K LGQD FL LL+ Q+++QDP P A+E AQLA +SQ+EQ +N + EL + + Sbjct: 20 KALGQDDFLTLLVAQLQNQDPMNPADATEFTAQLAQYSQLEQLFNLNDAMDELTSATTES 79 Query: 81 Q---ASSYIGKNITNADGSIS 98 Q S IG+++ + Sbjct: 80 QNISTLSLIGQDVVVEGAKFT 100 >gi|317121821|ref|YP_004101824.1| flagellar hook capping protein [Thermaerobacter marianensis DSM 12885] gi|315591801|gb|ADU51097.1| flagellar hook capping protein [Thermaerobacter marianensis DSM 12885] Length = 183 Score = 85.0 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 28/102 (27%), Positives = 53/102 (51%), Gaps = 6/102 (5%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSY 85 DAF +LL Q+++QDP +P++ + VAQLA +Q+E++ + +T+ L L +A + Sbjct: 72 DAFFRLLAAQLRYQDPLQPLQDTAFVAQLAQLTQLEETRALRATVSGLAALPLLGRAVA- 130 Query: 86 IGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGI 127 +T ADG G V +++ + +D + + Sbjct: 131 ----VTTADGEQQGTVTGVRLDPA-APGLIIDGRPVAWADVL 167 >gi|229918634|ref|YP_002887280.1| flagellar hook capping protein [Exiguobacterium sp. AT1b] gi|229470063|gb|ACQ71835.1| flagellar hook capping protein [Exiguobacterium sp. AT1b] Length = 142 Score = 84.6 bits (208), Expect = 4e-15, Method: Composition-based stats. Identities = 41/130 (31%), Positives = 64/130 (49%), Gaps = 10/130 (7%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69 T + S K+ +D F+KLL+ QI +QDP PM+ E +AQ+A FS +EQ ++ Sbjct: 12 TLPDQSLPKATNQYDKDMFMKLLLAQIANQDPMSPMEDKEFIAQMAQFSSLEQMQAISKQ 71 Query: 70 LQELL---KSNNLAQASSYIGKNITNADGSI------SGVVNAIQVSS-TGLTAITVDNT 119 L +L +++++ SS IGK I + SG V +I + TG A D T Sbjct: 72 LDSVLVDRHMSSISEYSSMIGKTIDFTSETSEETTKGSGRVVSISRNDLTGYMADLEDGT 131 Query: 120 EIPITTGIRI 129 + + I Sbjct: 132 SVSVYDITSI 141 >gi|58582194|ref|YP_201210.1| flagellar basal body rod modification protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84624087|ref|YP_451459.1| flagellar basal body rod modification protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188576755|ref|YP_001913684.1| flagellar basal body rod modification protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|188576946|ref|YP_001913875.1| flagellar basal body rod modification protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|58426788|gb|AAW75825.1| flagellar protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84368027|dbj|BAE69185.1| flagellar protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188521207|gb|ACD59152.1| flagellar protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521398|gb|ACD59343.1| flagellar protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 221 Score = 84.6 bits (208), Expect = 4e-15, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 11/122 (9%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 K +++LGQ FLKL+ Q++HQDP +PM+ S + QLA FS ++ +N+ + Sbjct: 15 STSSKTPKKEESLGQADFLKLMTEQLQHQDPLKPMENSAFLGQLAQFSTVQGIGDLNTKV 74 Query: 71 QEL---LKSNNLAQASSYIGKNI--------TNADGSISGVVNAIQVSSTGLTAITVDNT 119 + S+ + + ++ +G N+ +A GS GVV A + + Sbjct: 75 SNFSTSMSSDQVLKGAALVGHNVLVPSAQVAIDATGSAKGVVTATSAGTVNFEITDANGA 134 Query: 120 EI 121 + Sbjct: 135 FV 136 >gi|312882660|ref|ZP_07742397.1| flagellar basal body rod modification protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309369621|gb|EFP97136.1| flagellar basal body rod modification protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 236 Score = 84.6 bits (208), Expect = 4e-15, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 59/115 (51%), Gaps = 11/115 (9%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 + + ++ K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+ Sbjct: 25 KNKPDETTGKQDLKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNNQF 84 Query: 71 QEL---LKSNNLAQASSYIGKN--------ITNADGSISGVVNAIQVSSTGLTAI 114 + L + SN QASS +G++ + DGS++ +V Q + + Sbjct: 85 ETLNASMTSNQALQASSLVGRDVLVPGASGVKTGDGSMAAMVKLPQSVDNLMVRV 139 >gi|21242728|ref|NP_642310.1| flagellar basal body rod modification protein [Xanthomonas axonopodis pv. citri str. 306] gi|294625273|ref|ZP_06703912.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294664590|ref|ZP_06729931.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|21108204|gb|AAM36846.1| flagellar protein [Xanthomonas axonopodis pv. citri str. 306] gi|292600447|gb|EFF44545.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292605647|gb|EFF48957.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 221 Score = 84.6 bits (208), Expect = 4e-15, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 63/136 (46%), Gaps = 16/136 (11%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 + +K + LGQ FLKL+ Q++HQDP +PM+ S + QLA FS ++ +N+ + Sbjct: 15 STSSTVAKKEDALGQADFLKLMTEQLQHQDPLKPMENSAFLGQLAQFSTVQGIGDLNTKV 74 Query: 71 QEL---LKSNNLAQASSYIGKNI--------TNADGSISGVVNA-----IQVSSTGLTAI 114 + S+ + + ++ +G N+ +A GS GVV A + T Sbjct: 75 SNFSDSMNSDQVLKGAALVGHNVLVPSAQVAIDATGSAKGVVAATSAGFVNFEITDANGT 134 Query: 115 TVDNTEIPITTGIRIS 130 V +P + +S Sbjct: 135 FVKQISVPASAAGEVS 150 >gi|86146156|ref|ZP_01064482.1| flagellar basal body rod modification protein [Vibrio sp. MED222] gi|218708803|ref|YP_002416424.1| flagellar basal body rod modification protein [Vibrio splendidus LGP32] gi|85836103|gb|EAQ54235.1| flagellar basal body rod modification protein [Vibrio sp. MED222] gi|218321822|emb|CAV17791.1| Flagellar hook capping protein FlgD [Vibrio splendidus LGP32] Length = 236 Score = 84.6 bits (208), Expect = 4e-15, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 49/83 (59%), Gaps = 3/83 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 ++ ++ K+ L QD FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+ Sbjct: 25 AKKPDETTGKQDLKQDDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNTQF 84 Query: 71 QEL---LKSNNLAQASSYIGKNI 90 + L + SN QASS +G+++ Sbjct: 85 ESLNSSMTSNQALQASSLVGRDV 107 >gi|160880842|ref|YP_001559810.1| flagellar hook capping protein [Clostridium phytofermentans ISDg] gi|160429508|gb|ABX43071.1| flagellar hook capping protein [Clostridium phytofermentans ISDg] Length = 275 Score = 84.6 bits (208), Expect = 4e-15, Method: Composition-based stats. Identities = 40/135 (29%), Positives = 71/135 (52%), Gaps = 18/135 (13%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 NT + T + LG+DAFL+LL+ Q+++QDP P +E V+QLA FSQ+E+ Sbjct: 17 NTAITTTNK---TKLGSSELGKDAFLQLLVCQMQNQDPLNPSTDTEFVSQLATFSQLEEL 73 Query: 64 VQMNSTLQELLKSNNLAQASSYIGKNI----TNADGS---ISGVVNAIQVSSTGLTAITV 116 + S + +QA S +GK++ T+++G ISG V+ I +S + ++V Sbjct: 74 QNLT-------ASTDKSQAFSLVGKDVILNATDSNGRTTYISGTVDFINMSKS-KVQLSV 125 Query: 117 DNTEIPITTGIRISN 131 + ++ + + Sbjct: 126 NGELYDMSQLYTVVD 140 >gi|331006030|ref|ZP_08329372.1| Flagellar basal-body rod modification protein FlgD [gamma proteobacterium IMCC1989] gi|330420159|gb|EGG94483.1| Flagellar basal-body rod modification protein FlgD [gamma proteobacterium IMCC1989] Length = 239 Score = 84.6 bits (208), Expect = 4e-15, Method: Composition-based stats. Identities = 38/108 (35%), Positives = 59/108 (54%), Gaps = 6/108 (5%) Query: 3 INTEVNPTQQEFSKSK---SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59 +N+ TQQE + S LGQ AFL+L+ITQ+++QDP P + SE +AQLA FS Sbjct: 11 LNSLSIQTQQEEEAAAAEASGNELGQTAFLELMITQMENQDPLSPQENSEFIAQLAQFSS 70 Query: 60 MEQSVQMNSTLQELLK---SNNLAQASSYIGKNITNADGSISGVVNAI 104 +E ++N+ SN QASS +G++++ V ++ Sbjct: 71 VEGLERLNTNFDSFTSSFISNQALQASSLVGRSVSVPSSKAELVEGSV 118 >gi|325927874|ref|ZP_08189098.1| flagellar hook capping protein [Xanthomonas perforans 91-118] gi|325541714|gb|EGD13232.1| flagellar hook capping protein [Xanthomonas perforans 91-118] Length = 221 Score = 84.6 bits (208), Expect = 4e-15, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 16/136 (11%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 + +K ++ LGQ FLKL+ Q++HQDP +PM+ S + QLA FS ++ +N+ + Sbjct: 15 STSSTVAKKEEALGQADFLKLMTEQLQHQDPLKPMENSAFLGQLAQFSTVQGIGDLNTKV 74 Query: 71 QEL---LKSNNLAQASSYIGKNI--------TNADGSISGVVNA-----IQVSSTGLTAI 114 + S+ + + ++ +G N+ +A GS GVV A + T Sbjct: 75 SNFSDSMNSDQVLKGAALVGHNVLVPSAQVAIDATGSAKGVVAATSAGFVNFEITDANGT 134 Query: 115 TVDNTEIPITTGIRIS 130 V +P + +S Sbjct: 135 FVKQISVPASAAGEVS 150 >gi|91791428|ref|YP_561079.1| flagellar hook capping protein [Shewanella denitrificans OS217] gi|91713430|gb|ABE53356.1| flagellar hook capping protein [Shewanella denitrificans OS217] Length = 135 Score = 84.6 bits (208), Expect = 4e-15, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 4/122 (3%) Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 ++ + + + D FL+L + Q+ +QDP EP+ SE +AQLA FS +E + Q N Sbjct: 9 NSYATTNPQTNIKLDDFLQLFVAQLNYQDPLEPVNNSEFLAQLAQFSSLEINRQSNDNSL 68 Query: 72 ELLKSNNLAQASSYIGKNI---TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128 LL + QA IG+++ T + + G V + + G +TV + + T I+ Sbjct: 69 SLLAIGSSDQALGLIGRSVEVNTQSGQAFIGDVTGVNFTQQG-PMLTVKGADDSLLTDIK 127 Query: 129 IS 130 + Sbjct: 128 LG 129 >gi|253681624|ref|ZP_04862421.1| flagellar hook assembly protein FlgD [Clostridium botulinum D str. 1873] gi|253561336|gb|EES90788.1| flagellar hook assembly protein FlgD [Clostridium botulinum D str. 1873] Length = 272 Score = 84.6 bits (208), Expect = 4e-15, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 12/116 (10%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 +N T + K + + ++AFLK+L ++ +QDP +++ ++QLA FS +EQ Sbjct: 42 VNHYNKATNRGTKIVKKGQEMDKNAFLKILTAELTNQDPMNAKDSTQYISQLAQFSSLEQ 101 Query: 63 SVQMNSTLQELLKSNNLAQASSYIGKNITNA-----DGSISGVVNAIQVSSTGLTA 113 +NST+ + AS+ +GK + + G V ++ + Sbjct: 102 MANLNSTM-------SFNSASNMVGKTVALSSYDEYGKQYGGTVTNVRKDGDDIMV 150 >gi|261253615|ref|ZP_05946188.1| flagellar basal-body rod modification protein FlgD [Vibrio orientalis CIP 102891] gi|260937006|gb|EEX92995.1| flagellar basal-body rod modification protein FlgD [Vibrio orientalis CIP 102891] Length = 237 Score = 84.6 bits (208), Expect = 4e-15, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 60/115 (52%), Gaps = 11/115 (9%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 + + +++ K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+ Sbjct: 26 KNKPNETTGKQDLKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNNQF 85 Query: 71 QEL---LKSNNLAQASSYIGKN--------ITNADGSISGVVNAIQVSSTGLTAI 114 + L + SN QASS +G++ + DG+++ +V Q + + Sbjct: 86 ETLNASMTSNQALQASSLVGRDVLVPGAAGVKKDDGNMAAMVKLPQAVDNVMVRV 140 >gi|114330360|ref|YP_746582.1| flagellar basal body rod modification protein [Nitrosomonas eutropha C91] gi|114307374|gb|ABI58617.1| flagellar hook capping protein [Nitrosomonas eutropha C91] Length = 223 Score = 84.6 bits (208), Expect = 4e-15, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 53/98 (54%), Gaps = 3/98 (3%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 ++ + ++ Q+ FLKLL+TQ+++QDP PM +E +Q+A S + Sbjct: 10 VSELLTSNGGSIKTARKGDEDMQERFLKLLVTQMQNQDPLSPMDNAEVTSQMAQISTVSG 69 Query: 63 SVQMNSTLQELLKSNNL---AQASSYIGKNITNADGSI 97 ++NSTL++L+ ++ +A++ IG+++ + Sbjct: 70 IDKLNSTLEKLVSDSDARRSFEAANMIGRSVLVPGADM 107 >gi|238919258|ref|YP_002932773.1| basal-body rod modification protein FlgD [Edwardsiella ictaluri 93-146] gi|238868827|gb|ACR68538.1| basal-body rod modification protein FlgD [Edwardsiella ictaluri 93-146] Length = 244 Score = 84.6 bits (208), Expect = 5e-15, Method: Composition-based stats. Identities = 32/100 (32%), Positives = 56/100 (56%), Gaps = 4/100 (4%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 ++ ++ VN + + + K L Q++FL LL+ Q+++QDPT P+K +E QLA S + Sbjct: 11 VDTSSPVNANSKTGLVADNGKDL-QNSFLTLLVAQLRNQDPTNPLKNNELTTQLAQISTV 69 Query: 61 EQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 ++N+TL + + SN QA+S IG + +I Sbjct: 70 SGIEKLNTTLGSISGQINSNQSIQATSLIGHGVMIPGKTI 109 >gi|85859174|ref|YP_461376.1| flagellar hook capping protein [Syntrophus aciditrophicus SB] gi|85722265|gb|ABC77208.1| flagellar hook capping protein [Syntrophus aciditrophicus SB] Length = 220 Score = 84.6 bits (208), Expect = 5e-15, Method: Composition-based stats. Identities = 33/92 (35%), Positives = 52/92 (56%), Gaps = 4/92 (4%) Query: 5 TEVNPTQQEFSKSKSKKTL-GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 T + S+ S L G+D FLK+LI Q+++Q+P P+ ++ AQLA FS +EQ Sbjct: 5 TNIGKAASAGSEGTSTNKLTGKDEFLKMLIAQLQNQNPLNPLDGTDFAAQLAQFSSLEQL 64 Query: 64 VQMNSTLQELL---KSNNLAQASSYIGKNITN 92 MNSTL+ L + N A++ IG+ ++ Sbjct: 65 TNMNSTLESLSALQTTQNGIMAANLIGRQVSA 96 >gi|218778869|ref|YP_002430187.1| flagellar hook capping protein [Desulfatibacillum alkenivorans AK-01] gi|218760253|gb|ACL02719.1| Flagellar basal body rod modification protein [Desulfatibacillum alkenivorans AK-01] Length = 230 Score = 84.6 bits (208), Expect = 5e-15, Method: Composition-based stats. Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 3/90 (3%) Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 + + LGQ+ FL+LLI Q+K+QDP PM+ ++ AQLA FS +EQ + +L+ Sbjct: 16 SNPTTESTGTGLGQEDFLQLLIAQLKNQDPLNPMEGTDFTAQLAQFSSLEQLFGIGDSLE 75 Query: 72 ELLKSNNLAQASS---YIGKNITNADGSIS 98 E+L + +GK I D S++ Sbjct: 76 EMLSIQSNNGTGDVGYLLGKVIVAEDDSLT 105 >gi|84388090|ref|ZP_00990986.1| flagellar basal body rod modification protein [Vibrio splendidus 12B01] gi|84377157|gb|EAP94027.1| flagellar basal body rod modification protein [Vibrio splendidus 12B01] Length = 237 Score = 84.2 bits (207), Expect = 5e-15, Method: Composition-based stats. Identities = 26/83 (31%), Positives = 49/83 (59%), Gaps = 3/83 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 ++ ++ K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+ Sbjct: 26 AKKPDETTGKQDLKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNTQF 85 Query: 71 QEL---LKSNNLAQASSYIGKNI 90 + L + SN QASS +G+++ Sbjct: 86 ESLNSSMTSNQALQASSLVGRDV 108 >gi|166712063|ref|ZP_02243270.1| flagellar basal body rod modification protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 221 Score = 84.2 bits (207), Expect = 5e-15, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 11/122 (9%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 K +++LGQ FLKL+ Q++HQDP +PM+ S + QLA FS ++ +N+ + Sbjct: 15 STSSKTPKKEESLGQADFLKLMTEQLQHQDPLKPMENSAFLGQLAQFSTVQGIGDLNTKV 74 Query: 71 QEL---LKSNNLAQASSYIGKNI--------TNADGSISGVVNAIQVSSTGLTAITVDNT 119 + S+ + + ++ +G N+ +A GS GVV A + + Sbjct: 75 SNFSTSMSSDQVLKGAALVGHNVLVPSAQVAIDATGSAKGVVAATSAGTVNFEITDANGA 134 Query: 120 EI 121 + Sbjct: 135 FV 136 >gi|301631990|ref|XP_002945074.1| PREDICTED: basal-body rod modification protein flgD-like [Xenopus (Silurana) tropicalis] Length = 222 Score = 84.2 bits (207), Expect = 5e-15, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 8/114 (7%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 T S + QD FLKLL+ Q+ +QDP PM ++ +Q+A + + Q+N Sbjct: 16 TTTATKGNSTTDPKAAQDRFLKLLVAQLNNQDPMNPMDNAQMTSQMAQINTVTGIQQLNL 75 Query: 69 TLQEL---LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNT 119 ++Q + + Q + IG+++ + A+ G + NT Sbjct: 76 SMQNMSEQFAAMQTLQGTMMIGRSVLAEGDKL-----AVDDKGNGKGYFVLGNT 124 >gi|294084419|ref|YP_003551177.1| flagellar hook capping protein [Candidatus Puniceispirillum marinum IMCC1322] gi|292663992|gb|ADE39093.1| flagellar hook capping protein [Candidatus Puniceispirillum marinum IMCC1322] Length = 230 Score = 84.2 bits (207), Expect = 5e-15, Method: Composition-based stats. Identities = 31/98 (31%), Positives = 53/98 (54%), Gaps = 11/98 (11%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL-- 73 + LGQ+ FL L+ TQ+++QDP PM+ ++ +AQ+A FS + MN TL L Sbjct: 28 APANNDQLGQEEFLTLMTTQLQNQDPFAPMENTDMIAQMAQFSTVTGITDMNQTLNGLAE 87 Query: 74 -LKSNNLAQASSYIGKNIT--------NADGSISGVVN 102 L +A AS+ +G ++ + +G I G+++ Sbjct: 88 TLAEFRIATASNMLGNSVMIPGNYARPDNNGEIHGMLD 125 >gi|83591886|ref|YP_425638.1| flagellar hook capping protein [Rhodospirillum rubrum ATCC 11170] gi|83574800|gb|ABC21351.1| Flagellar hook capping protein [Rhodospirillum rubrum ATCC 11170] Length = 245 Score = 84.2 bits (207), Expect = 5e-15, Method: Composition-based stats. Identities = 37/109 (33%), Positives = 61/109 (55%), Gaps = 5/109 (4%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK-- 75 + K T + FL LL +Q+K+QDP PM ++E QL F+Q+EQ + N +++LL Sbjct: 24 RGKLTSDMNTFLTLLTSQLKNQDPLSPMDSTEFTNQLVQFAQVEQQINTNDNMEKLLAVS 83 Query: 76 -SNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPI 123 ++ A A Y+GK + A+ ++ + + V + GLTA DN I + Sbjct: 84 GNSQAAMAVGYLGKYV-EAESTVVALQDGQAVFTYGLTA-AADNVTIAL 130 >gi|149203159|ref|ZP_01880130.1| Possible FlgD protein [Roseovarius sp. TM1035] gi|149143705|gb|EDM31741.1| Possible FlgD protein [Roseovarius sp. TM1035] Length = 230 Score = 84.2 bits (207), Expect = 5e-15, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 15/118 (12%) Query: 24 GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLA 80 + FL+LL TQ+++QDP P+++S+ QLA FS +EQ V N L +L L + L+ Sbjct: 37 DFETFLRLLTTQLRNQDPLNPIESSDFAVQLATFSTVEQQVLTNDLLTDLGARLGAQGLS 96 Query: 81 QASSYIGKNITNAD------------GSISGVVNAIQVSSTGLTAITVDNTEIPITTG 126 Q S +IG ++ +A ++ ++ I V+ IP +G Sbjct: 97 QVSGWIGMEALATGPVAFSGQPISLIATVESQADAAEIVASDARGIIVNRQTIPARSG 154 >gi|332701536|ref|ZP_08421624.1| flagellar hook capping protein [Desulfovibrio africanus str. Walvis Bay] gi|332551685|gb|EGJ48729.1| flagellar hook capping protein [Desulfovibrio africanus str. Walvis Bay] Length = 232 Score = 84.2 bits (207), Expect = 6e-15, Method: Composition-based stats. Identities = 29/108 (26%), Positives = 60/108 (55%), Gaps = 4/108 (3%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 +++ + +N T E + ++ +L QD FL++L+ Q++ QDPTEP ++ V Q+ ++Q+ Sbjct: 3 IDVTSYLNSTMPE-ADTEPSSSLDQDDFLQILVAQLEQQDPTEPTDNAQMVDQMTSYAQL 61 Query: 61 EQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSISGVVNAIQ 105 EQ +++ + L + S QA+ YIG + +++ +I Sbjct: 62 EQLTNISTAMDTLIAGMASLGATQAAGYIGMGVEAGGYTVAKKGESIS 109 >gi|256376466|ref|YP_003100126.1| flagellar hook capping protein [Actinosynnema mirum DSM 43827] gi|255920769|gb|ACU36280.1| flagellar hook capping protein [Actinosynnema mirum DSM 43827] Length = 139 Score = 84.2 bits (207), Expect = 6e-15, Method: Composition-based stats. Identities = 34/129 (26%), Positives = 66/129 (51%), Gaps = 5/129 (3%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 + T + S + +LG DAFLKLL+ Q+K+QDP+ P ++ +AQ A + +++ Sbjct: 10 STQATTPNQSSGQSALGSLGGDAFLKLLVAQLKYQDPSNPTDSTAFMAQTAQLTSVDKLN 69 Query: 65 QMNSTLQELLKSNNLAQASSYIGKNI---TNADGSISGVVNAIQVSSTGLTAITVDNTEI 121 + +L+ S AQA+ +G+ + T + SG+V++ S + V ++ Sbjct: 70 SIAQQQTQLVASQLSAQAAGLVGREVTYTTASGERASGIVSSTTFGS--APTLRVGAVDV 127 Query: 122 PITTGIRIS 130 P+++ S Sbjct: 128 PLSSITGTS 136 >gi|37525840|ref|NP_929184.1| flagellar basal body rod modification protein [Photorhabdus luminescens subsp. laumondii TTO1] gi|36785269|emb|CAE14210.1| Basal-body rod modification protein FlgD (flagellar protein for the initiation of hook assembly) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 231 Score = 84.2 bits (207), Expect = 6e-15, Method: Composition-based stats. Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 8/102 (7%) Query: 3 INTEVNPTQQE----FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58 +N +N T K K + L + F+KLL+ Q+K+QDPT PMK +E + LA + Sbjct: 7 VNESLNNTIVGEPVLAGKKKGSEELNSN-FMKLLVAQMKNQDPTNPMKNNELTSHLAQIN 65 Query: 59 QMEQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 + ++N+TL + + +N QAS+ IG+ + +I Sbjct: 66 TLAGIEKLNTTLGSIVGQINNNQPVQASALIGRGVMIPGNTI 107 >gi|330953720|gb|EGH53980.1| flagellar basal body rod modification protein [Pseudomonas syringae Cit 7] Length = 229 Score = 83.8 bits (206), Expect = 6e-15, Method: Composition-based stats. Identities = 40/99 (40%), Positives = 62/99 (62%), Gaps = 6/99 (6%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 +NT NPT +K+ S TLG+D+FL+LL+TQ+K+Q+P +P ++ VAQLA FS +E Sbjct: 16 LNTLQNPTP---TKTDSTGTLGKDSFLQLLVTQMKNQNPLDPQDNTQFVAQLAQFSSLES 72 Query: 63 SVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSIS 98 + ST+ + KS+ QASS +G+++ S S Sbjct: 73 MQNLTSTVDTIASSYKSSQALQASSLVGRSVIIDASSTS 111 >gi|315281357|ref|ZP_07869997.1| flagellar hook capping protein [Listeria marthii FSL S4-120] gi|313614996|gb|EFR88500.1| flagellar hook capping protein [Listeria marthii FSL S4-120] Length = 140 Score = 83.8 bits (206), Expect = 6e-15, Method: Composition-based stats. Identities = 40/132 (30%), Positives = 71/132 (53%), Gaps = 7/132 (5%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 + N S KTLG+D F+KL +T +++QDP+ P+ +E ++Q+A S MEQ Sbjct: 8 SGANQNANNAVTSSVSKTLGKDDFMKLFLTSLQYQDPSSPLDTNEMMSQMAQLSLMEQVA 67 Query: 65 QMNSTLQEL---LKSNNLAQASSYIGKN---ITNADGSISGVVNAIQVSSTGLTAITVDN 118 M + + +L +++ L A ++IGK+ ++ ISG V ++Q ++ G+ DN Sbjct: 68 NMTTAVDKLSEQAQNSALQSAVNFIGKDIKGVSLNGEVISGKVESVQQTTNGVMLKLKDN 127 Query: 119 TE-IPITTGIRI 129 +P+T I Sbjct: 128 DSLVPMTYVTEI 139 >gi|90408059|ref|ZP_01216230.1| flagellar basal body rod modification protein [Psychromonas sp. CNPT3] gi|90310816|gb|EAS38930.1| flagellar basal body rod modification protein [Psychromonas sp. CNPT3] Length = 232 Score = 83.8 bits (206), Expect = 7e-15, Method: Composition-based stats. Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 4/100 (4%) Query: 1 MEINTEVNPTQQEFSKS-KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59 + +N + P Q +K K+ L Q+ F LL Q+ +QDP +P+ SE +AQ+A F+ Sbjct: 10 LNLNKPLTPEQVSANKDVDKKQQLEQEDFFALLSQQLAYQDPFKPVDNSEMIAQMASFTT 69 Query: 60 MEQSVQMNS---TLQELLKSNNLAQASSYIGKNITNADGS 96 E +M + L+ +L S+ +ASS +GK + + Sbjct: 70 AEGITKMGNEFAGLKGVLSSSQALEASSLVGKKVLIPSDT 109 >gi|253996320|ref|YP_003048384.1| flagellar hook capping protein [Methylotenera mobilis JLW8] gi|253982999|gb|ACT47857.1| flagellar hook capping protein [Methylotenera mobilis JLW8] Length = 224 Score = 83.8 bits (206), Expect = 7e-15, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 55/97 (56%), Gaps = 3/97 (3%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 T ++ + + + + QD F+KLL+TQ+++QDP PM ++ +Q+A S + Sbjct: 13 TLLDAVNGKKNTTTTSVDAAQDRFMKLLVTQMRNQDPLNPMDNAQVTSQMAQLSTVTGID 72 Query: 65 QMNSTLQELLKSNNLA---QASSYIGKNITNADGSIS 98 ++N+TL+ L+ + + QAS+ IG+NI ++ Sbjct: 73 KLNNTLETLINNVQMGQSYQASNMIGRNILTPGNTVE 109 >gi|332525067|ref|ZP_08401247.1| flagellar hook capping protein [Rubrivivax benzoatilyticus JA2] gi|332108356|gb|EGJ09580.1| flagellar hook capping protein [Rubrivivax benzoatilyticus JA2] Length = 213 Score = 83.8 bits (206), Expect = 8e-15, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 3/95 (3%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 I+ SK+ + D FLKLL+ Q+++QDP PM ++ +Q+A + + Sbjct: 4 IDPYAAINTPTESKNAGTASASADRFLKLLVAQMQNQDPLNPMDNAQVTSQMAQINTVTG 63 Query: 63 SVQMNST---LQELLKSNNLAQASSYIGKNITNAD 94 ++N T L Q +S IG+++T Sbjct: 64 IEKLNETVTGLNSQFLQMQAMQGASLIGRDVTVEG 98 >gi|291538501|emb|CBL11612.1| Flagellar hook capping protein [Roseburia intestinalis XB6B4] Length = 251 Score = 83.8 bits (206), Expect = 8e-15, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 69/136 (50%), Gaps = 15/136 (11%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 ++ ++ SKS + LG D FL+LL ++++QDP EP +E VAQLA FSQME Sbjct: 8 VDGKIPKDTSTTSKSDTSNDLGYDQFLQLLCAEMQYQDPLEPTSNTEYVAQLATFSQMEA 67 Query: 63 SVQMNSTLQELLKSNNLAQASSYIGKNI-------TNADGSISGVVNAIQVSSTGLTAIT 115 ++ M ST++ + A++ +GK + T + G V+ +Q G I Sbjct: 68 TLGMQSTIES-------SNANALVGKYVIIKTTSSTGETTATEGFVDYVQ-KENGEQKIC 119 Query: 116 VDNTEIPITTGIRISN 131 V+ ++ ++++ Sbjct: 120 VNGVLYSLSDVYQVAD 135 >gi|238916753|ref|YP_002930270.1| flagellar basal-body rod modification protein FlgD [Eubacterium eligens ATCC 27750] gi|238872113|gb|ACR71823.1| flagellar basal-body rod modification protein FlgD [Eubacterium eligens ATCC 27750] Length = 185 Score = 83.4 bits (205), Expect = 8e-15, Method: Composition-based stats. Identities = 39/135 (28%), Positives = 71/135 (52%), Gaps = 14/135 (10%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 ++NT ++ T + S S +K TL + FL+L++ ++++QDP EP S+ +AQLA F+Q+E Sbjct: 22 DVNTNISSTGKNNS-SGNKTTLDVNEFLQLMVAEMQNQDPLEPTDNSDYMAQLATFTQVE 80 Query: 62 QSVQMNSTLQELLKSNNLAQASSYIGKNIT-----NADGSISGVVNAIQVSSTGLTAITV 116 + +MN+ + AS +GK + N+DG I G V+ + S G + + Sbjct: 81 ATKEMNT-------NTLQGMASDLVGKQVIMTTNQNSDGFIGGTVDYWE-SINGTVYLGI 132 Query: 117 DNTEIPITTGIRISN 131 I+ + + Sbjct: 133 GGKLYDISDLDTVMD 147 >gi|119503643|ref|ZP_01625726.1| Flagellar hook capping protein [marine gamma proteobacterium HTCC2080] gi|119460705|gb|EAW41797.1| Flagellar hook capping protein [marine gamma proteobacterium HTCC2080] Length = 239 Score = 83.4 bits (205), Expect = 9e-15, Method: Composition-based stats. Identities = 30/94 (31%), Positives = 54/94 (57%), Gaps = 4/94 (4%) Query: 6 EVNPT-QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 +NPT E K+ S + +G + FL+L+I Q+++QDPT+PM ++QLA F+Q+ Sbjct: 18 SLNPTRAAEKGKAGSAEEMGSEEFLQLMIAQLENQDPTKPMDQMAFMSQLAQFTQVSGIQ 77 Query: 65 QMNSTLQEL---LKSNNLAQASSYIGKNITNADG 95 ++N + L L QAS +G++++ + Sbjct: 78 ELNESFSGLTETLTGQQALQASQMVGRSVSTSSN 111 >gi|259417403|ref|ZP_05741322.1| flagellar basal body rod modification protein [Silicibacter sp. TrichCH4B] gi|259346309|gb|EEW58123.1| flagellar basal body rod modification protein [Silicibacter sp. TrichCH4B] Length = 231 Score = 83.4 bits (205), Expect = 9e-15, Method: Composition-based stats. Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 3/91 (3%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 T + S T + FL+L+ TQ K+QDP EPM +S+ AQLA FS +EQ V Sbjct: 13 TATGGAAAGKQSATSALTSDFETFLRLMTTQAKYQDPLEPMDSSDYTAQLAQFSSVEQQV 72 Query: 65 QMNSTLQELLKS---NNLAQASSYIGKNITN 92 N TL +L + +N++Q + ++GK + Sbjct: 73 LTNETLTSMLTALSLSNMSQLTGWVGKEVRA 103 >gi|66046708|ref|YP_236549.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. syringae B728a] gi|63257415|gb|AAY38511.1| Flagellar hook capping protein [Pseudomonas syringae pv. syringae B728a] gi|330972412|gb|EGH72478.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 229 Score = 83.4 bits (205), Expect = 9e-15, Method: Composition-based stats. Identities = 39/99 (39%), Positives = 61/99 (61%), Gaps = 6/99 (6%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 +NT NPT + + S TLG+D+FL+LL+TQ+K+Q+P +P ++ VAQLA FS +E Sbjct: 16 LNTLQNPTP---TATNSTGTLGKDSFLQLLVTQMKNQNPLDPQDNTQFVAQLAQFSSLES 72 Query: 63 SVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSIS 98 + ST+ + KS+ QASS +G+++ S S Sbjct: 73 MQNLTSTVDTIASSYKSSQALQASSLVGRSVIIDASSTS 111 >gi|218133667|ref|ZP_03462471.1| hypothetical protein BACPEC_01536 [Bacteroides pectinophilus ATCC 43243] gi|217991042|gb|EEC57048.1| hypothetical protein BACPEC_01536 [Bacteroides pectinophilus ATCC 43243] Length = 199 Score = 83.4 bits (205), Expect = 9e-15, Method: Composition-based stats. Identities = 38/135 (28%), Positives = 67/135 (49%), Gaps = 13/135 (9%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 +NTE + L +DAFL+LL+ ++++QDP EP +E VAQLA F+Q+E+ Sbjct: 12 LNTEATSIYHSTTDKSYDNGLDKDAFLQLLVAEMQNQDPLEPSSNTEYVAQLATFTQVEE 71 Query: 63 SVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAI------QVSSTGLTAITV 116 M +++ + QA++ +GK + + SG + + V+S G T + + Sbjct: 72 MQNMANSMAQ-------NQANALVGKTVIMNTITASGTTSYVGGVVDRIVNSNGKTYVGI 124 Query: 117 DNTEIPITTGIRISN 131 + + I I N Sbjct: 125 NGSLYDINDLNSILN 139 >gi|148976393|ref|ZP_01813099.1| flagellar basal body rod modification protein D [Vibrionales bacterium SWAT-3] gi|145964216|gb|EDK29472.1| flagellar basal body rod modification protein D [Vibrionales bacterium SWAT-3] Length = 237 Score = 83.4 bits (205), Expect = 9e-15, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 49/83 (59%), Gaps = 3/83 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 ++ ++ K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MNS Sbjct: 26 AKKPDETTGKQDLKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNSQF 85 Query: 71 QEL---LKSNNLAQASSYIGKNI 90 + L + SN QASS +G+++ Sbjct: 86 ESLNSSMTSNQALQASSLVGRDV 108 >gi|225569973|ref|ZP_03778998.1| hypothetical protein CLOHYLEM_06068 [Clostridium hylemonae DSM 15053] gi|225161443|gb|EEG74062.1| hypothetical protein CLOHYLEM_06068 [Clostridium hylemonae DSM 15053] Length = 171 Score = 83.4 bits (205), Expect = 9e-15, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 7/133 (5%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 T S SK L + F KLL Q+++QD PM SE +AQ+ ++ Sbjct: 19 TSSAGNSAGTSSSKGSNELTINDFYKLLSAQLRYQDADNPMDTSEMMAQMVQTQMIQAIT 78 Query: 65 QMNSTLQELLKSNNLAQASSYIGKNITNA----DGSISGVVNAIQVSS---TGLTAITVD 117 +M++ E+ N ++ ASS +GK +T A DG +G VS ++ +D Sbjct: 79 EMSAINLEMYAINTISYASSMVGKTVTMAEVDEDGKFTGETTTGTVSGILMGNNPSLYID 138 Query: 118 NTEIPITTGIRIS 130 E ++ + + Sbjct: 139 GKEYSLSQIMTVG 151 >gi|284989549|ref|YP_003408103.1| flagellar hook capping protein [Geodermatophilus obscurus DSM 43160] gi|284062794|gb|ADB73732.1| flagellar hook capping protein [Geodermatophilus obscurus DSM 43160] Length = 140 Score = 83.4 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 62/120 (51%), Gaps = 4/120 (3%) Query: 14 FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73 S +G+D FL+LL+ Q+++QDP P +E ++Q A F+Q+E+ ++ + L Sbjct: 17 TSTVTRTDQMGKDVFLQLLVAQMRYQDPNSPASTTEFMSQTATFTQVEKLEEIAAQNASL 76 Query: 74 LKSNNLAQASSYIGKNITNADG---SISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 + A + +G ++ D +++G V ++++S + VD ++PI +S Sbjct: 77 VALQRSLSAGALVGHTVSYTDEGGVTVTGTVGSVRISGD-EPSAVVDGVDVPIGRLTEVS 135 >gi|158320519|ref|YP_001513026.1| flagellar hook capping protein [Alkaliphilus oremlandii OhILAs] gi|158140718|gb|ABW19030.1| flagellar hook capping protein [Alkaliphilus oremlandii OhILAs] Length = 141 Score = 83.4 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 38/109 (34%), Positives = 60/109 (55%), Gaps = 5/109 (4%) Query: 14 FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73 + K LG+DAFL LL+TQ+K+QDP PM + +AQ+A FS +EQ +N+TL Sbjct: 20 NQEKKQTDALGKDAFLNLLVTQLKNQDPLNPMDDRDFIAQMAQFSSLEQMQNLNTTLT-- 77 Query: 74 LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIP 122 N + +I + N S + +V+ + + GL +T +N E+P Sbjct: 78 ---NTQSSIMEHITQMNNNFVKSQTNIVDQLVKINEGLRKLTGENPEVP 123 >gi|225375326|ref|ZP_03752547.1| hypothetical protein ROSEINA2194_00951 [Roseburia inulinivorans DSM 16841] gi|225212815|gb|EEG95169.1| hypothetical protein ROSEINA2194_00951 [Roseburia inulinivorans DSM 16841] Length = 224 Score = 83.4 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 62/124 (50%), Gaps = 16/124 (12%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75 K K LG D FL++L ++++QDP EP +E +AQLA FSQ+E + + ST++ Sbjct: 29 KDKKTNELGYDQFLQILCAEMQYQDPLEPTSNTEYIAQLATFSQLESQLSVQSTIE---- 84 Query: 76 SNNLAQASSYIGKNI--------TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGI 127 + A+ +GK + T I+G + + + G T ++V++ + Sbjct: 85 ---ASSANDLVGKYVIMKVTSSTTGETSYIAGTCDYV-LHKNGETFLSVNDGLYNLKDLD 140 Query: 128 RISN 131 +++ Sbjct: 141 TVAD 144 >gi|84502383|ref|ZP_01000519.1| related to basal-body rod modification protein (FlgD) [Oceanicola batsensis HTCC2597] gi|84389195|gb|EAQ01992.1| related to basal-body rod modification protein (FlgD) [Oceanicola batsensis HTCC2597] Length = 221 Score = 83.4 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 5/99 (5%) Query: 1 MEINTEVNPTQQEFSKSKSKKTL--GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58 ++I T + + + L +FLKLL Q+ +QDP EPM +S V+QLA S Sbjct: 2 VDITGTAAATSGQTLSTVASNKLSADYQSFLKLLTAQLTNQDPLEPMDSSTFVSQLAQLS 61 Query: 59 QMEQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNAD 94 Q+EQS+Q N+ L+ + L + L IG+ ++ Sbjct: 62 QVEQSIQTNTHLESISGQLANAGLTSDLGLIGREVSVPG 100 >gi|39995525|ref|NP_951476.1| flagellar hook assembly protein FlgD [Geobacter sulfurreducens PCA] gi|39982288|gb|AAR33749.1| flagellar hook assembly protein FlgD [Geobacter sulfurreducens PCA] gi|298504525|gb|ADI83248.1| flagellar hook capping protein FlgD [Geobacter sulfurreducens KN400] Length = 218 Score = 83.4 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 3/99 (3%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 + N T + K + +D FLKL +TQ+++QDP P ++E + QLA +Q+EQ Sbjct: 2 VYGVTNDTAAAAAAMKKSTGMNKDDFLKLFVTQLQNQDPLNPQDSTEFIGQLAQLTQVEQ 61 Query: 63 SVQM---NSTLQELLKSNNLAQASSYIGKNITNADGSIS 98 + S L L+ A S+IGK IT + I Sbjct: 62 AYNTNSNLSNLLNLVNGATSLSAVSFIGKEITASGDLIK 100 >gi|331005438|ref|ZP_08328817.1| Flagellar basal-body rod modification protein FlgD [gamma proteobacterium IMCC1989] gi|330420714|gb|EGG95001.1| Flagellar basal-body rod modification protein FlgD [gamma proteobacterium IMCC1989] Length = 136 Score = 83.1 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 2/122 (1%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 + + + + + Q+ FL++L+ Q+ +QDP EP+ SE ++Q A + + Q+ N L Sbjct: 8 NSQSNTALQRAGIDQEDFLQVLLAQLNYQDPLEPVDNSEFISQFAELTTLTQTQSSNDKL 67 Query: 71 QELLKSNNLAQASSYIGKNIT--NADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128 LL ++ QA IGK + ++ G V I SS G +TV + G+ Sbjct: 68 DSLLTIQSVNQAVQLIGKTVEVNSSGSDTIGQVTTITFSSEGTPQMTVLRDDGGFINGVG 127 Query: 129 IS 130 +S Sbjct: 128 LS 129 >gi|331017027|gb|EGH97083.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 229 Score = 83.1 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 30/79 (37%), Positives = 50/79 (63%), Gaps = 3/79 (3%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNL 79 LG+DAFL+LL+TQ+K+Q+P +P ++ VAQLA FS +E + T+ + +S+ Sbjct: 33 LGKDAFLQLLVTQMKNQNPLDPQDNTQFVAQLAQFSSLESMQNLTKTVDTIASSYQSSQA 92 Query: 80 AQASSYIGKNITNADGSIS 98 QASS +G+++ S + Sbjct: 93 LQASSLVGRSVIIDSSSTT 111 >gi|257484950|ref|ZP_05638991.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331011041|gb|EGH91097.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 228 Score = 83.1 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 39/99 (39%), Positives = 61/99 (61%), Gaps = 6/99 (6%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 +NT NPT + + S TLG+DAFL+LL+TQ+K+Q+P +P ++ VAQLA FS +E Sbjct: 15 LNTLQNPTP---TATNSTGTLGKDAFLQLLVTQMKNQNPLDPQDNTQFVAQLAQFSSLES 71 Query: 63 SVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSIS 98 + ST+ + KS+ QASS +G+++ S + Sbjct: 72 MQNLTSTVDTIATSYKSSQALQASSLVGRSVIIDSSSTT 110 >gi|99082818|ref|YP_614972.1| flagellar basal body rod modification protein [Ruegeria sp. TM1040] gi|99039098|gb|ABF65710.1| flagellar basal-body rod modification protein FlgD [Ruegeria sp. TM1040] Length = 231 Score = 83.1 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 31/97 (31%), Positives = 54/97 (55%), Gaps = 3/97 (3%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75 + S T + FL+L+ TQ K+QDP EPM +S+ AQLA FS +EQ V N TL +L Sbjct: 24 SATSALTSDFETFLRLMTTQAKYQDPLEPMDSSDYTAQLAQFSSVEQQVLTNETLTSMLT 83 Query: 76 S---NNLAQASSYIGKNITNADGSISGVVNAIQVSST 109 + +N++Q + ++G+ + +++ ++ Sbjct: 84 ALSLSNMSQLTGWVGREVRAQAAGYFDGSSSVSIAPN 120 >gi|311105934|ref|YP_003978787.1| basal-body rod modification protein FlgD [Achromobacter xylosoxidans A8] gi|310760623|gb|ADP16072.1| basal-body rod modification protein FlgD [Achromobacter xylosoxidans A8] Length = 232 Score = 83.1 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 4/130 (3%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 T + Q + S + + L QD FLKLL+TQ+++QDP PM+ +E +QLA S +E Sbjct: 11 TGLGLAQTGANGSSTAQGL-QDQFLKLLVTQLQNQDPLNPMQNAELTSQLAQISTVEGIT 69 Query: 65 QMNSTLQELLKS---NNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEI 121 + +T+ + + A + IGK + I V+A + +T +D Sbjct: 70 NLKNTMLAISGQIDVSQSMNAVAMIGKGVLIPGSKIKSGVDAANPEARVVTPYGLDLQGD 129 Query: 122 PITTGIRISN 131 IRIS+ Sbjct: 130 AQKVQIRISD 139 >gi|160896080|ref|YP_001561662.1| flagellar hook capping protein [Delftia acidovorans SPH-1] gi|160361664|gb|ABX33277.1| flagellar hook capping protein [Delftia acidovorans SPH-1] Length = 220 Score = 83.1 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 3/92 (3%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 + S S + QD FLKLL+ Q+ +QDP PM ++ +Q+A + + Q+N Sbjct: 15 NNKSATSNSTTDPAAAQDRFLKLLVAQLNNQDPMNPMDNAQMTSQMAQINTVTGIQQLNK 74 Query: 69 TLQEL---LKSNNLAQASSYIGKNITNADGSI 97 T++ + + + Q + IG+ + ++ Sbjct: 75 TMESMAGQFTAMQVLQGTQMIGRTVLTEGNTL 106 >gi|288962682|ref|YP_003452976.1| flagellar basal-body rod modification protein [Azospirillum sp. B510] gi|288914948|dbj|BAI76432.1| flagellar basal-body rod modification protein [Azospirillum sp. B510] Length = 232 Score = 82.7 bits (203), Expect = 1e-14, Method: Composition-based stats. Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 3/84 (3%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---L 74 K T+ ++FLKLL Q+++QDP PM A++ + QLA S +EQS++ N TL ++ L Sbjct: 34 PKKATVDYESFLKLLTAQLRNQDPLAPMDATQFMTQLAQLSTVEQSMRSNDTLGKVLDTL 93 Query: 75 KSNNLAQASSYIGKNITNADGSIS 98 KS+ + + +G+ + A +S Sbjct: 94 KSSGMRMDMALLGRKVEVASDQMS 117 >gi|28869139|ref|NP_791758.1| basal-body rod modification protein FlgD [Pseudomonas syringae pv. tomato str. DC3000] gi|213967583|ref|ZP_03395731.1| basal-body rod modification protein FlgD [Pseudomonas syringae pv. tomato T1] gi|301385712|ref|ZP_07234130.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. tomato Max13] gi|302060076|ref|ZP_07251617.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. tomato K40] gi|302134835|ref|ZP_07260825.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28852379|gb|AAO55453.1| basal-body rod modification protein FlgD [Pseudomonas syringae pv. tomato str. DC3000] gi|213927884|gb|EEB61431.1| basal-body rod modification protein FlgD [Pseudomonas syringae pv. tomato T1] Length = 229 Score = 82.7 bits (203), Expect = 1e-14, Method: Composition-based stats. Identities = 30/79 (37%), Positives = 50/79 (63%), Gaps = 3/79 (3%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNL 79 LG+DAFL+LL+TQ+K+Q+P +P ++ VAQLA FS +E + T+ + +S+ Sbjct: 33 LGKDAFLQLLVTQMKNQNPLDPQDNTQFVAQLAQFSSLESMQNLTKTVDTIASSYQSSQA 92 Query: 80 AQASSYIGKNITNADGSIS 98 QASS +G+++ S + Sbjct: 93 LQASSLVGRSVIIDSSSTT 111 >gi|168182739|ref|ZP_02617403.1| flagellar hook capping protein [Clostridium botulinum Bf] gi|237796096|ref|YP_002863648.1| flagellar hook capping protein [Clostridium botulinum Ba4 str. 657] gi|182674115|gb|EDT86076.1| flagellar hook capping protein [Clostridium botulinum Bf] gi|229261576|gb|ACQ52609.1| flagellar hook capping protein [Clostridium botulinum Ba4 str. 657] Length = 265 Score = 82.7 bits (203), Expect = 1e-14, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 14/116 (12%) Query: 1 MEINTEVNPTQQEFSKS--KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58 +E +TE T+ K + L ++AF K+L ++ +QDPT +E V+QLA FS Sbjct: 29 IEKSTEATATETARGTRIVKKGQDLDKNAFFKILAAELANQDPTNAKDGTEYVSQLAQFS 88 Query: 59 QMEQSVQMNSTLQELLKSNNLAQASSYIGKNIT-----NADGSISGVVNAIQVSST 109 +EQ +NS ++ L ASS+IGK + +G+V + + Sbjct: 89 SLEQMANLNSMMK-------LTGASSFIGKVVLLRRFDEQGNQYAGIVRNVIKNGD 137 Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 9/83 (10%) Query: 56 VFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGS--ISGVVNAIQVSSTGL-- 111 F+ + + + +N+L A + IGKN+ DG+ +SGVV + + G+ Sbjct: 152 EFAMEDVLNITDDINENSKYNNDLLNAVNLIGKNVLMDDGTEKLSGVVKGVVRNGLGVSI 211 Query: 112 -TAITVDNTE----IPITTGIRI 129 +T D E +P + Sbjct: 212 RVTVTKDGKEQDIYVPFEYVTNV 234 >gi|52841450|ref|YP_095249.1| flagellar basal body rod modification protein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628561|gb|AAU27302.1| flagellar basal body rod modification protein FlgD [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 225 Score = 82.7 bits (203), Expect = 1e-14, Method: Composition-based stats. Identities = 30/85 (35%), Positives = 52/85 (61%), Gaps = 3/85 (3%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--- 73 S ++ LGQ FL+L++ Q+++QDP +P E ++QLA FS + +M +LQ+L Sbjct: 22 SGKRQNLGQQDFLRLMVAQVQNQDPLQPQANGEFLSQLAQFSTNDGITKMQESLQQLASS 81 Query: 74 LKSNNLAQASSYIGKNITNADGSIS 98 L+SN QAS+ +G+ + ++S Sbjct: 82 LQSNQALQASALVGRKVLVNSNTLS 106 >gi|71737896|ref|YP_275564.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|289627762|ref|ZP_06460716.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651648|ref|ZP_06482991.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. aesculi str. 2250] gi|298487858|ref|ZP_07005898.1| Flagellar basal-body rod modification protein flgD [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|71558449|gb|AAZ37660.1| flagellar basal-body rod modification protein FlgD [Pseudomonas syringae pv. phaseolicola 1448A] gi|298157583|gb|EFH98663.1| Flagellar basal-body rod modification protein flgD [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320325092|gb|EFW81161.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. glycinea str. B076] gi|320329351|gb|EFW85344.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330866421|gb|EGH01130.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330880521|gb|EGH14670.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330889086|gb|EGH21747.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. mori str. 301020] gi|330986467|gb|EGH84570.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. lachrymans str. M301315] Length = 228 Score = 82.7 bits (203), Expect = 1e-14, Method: Composition-based stats. Identities = 39/99 (39%), Positives = 61/99 (61%), Gaps = 6/99 (6%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 +NT NPT + + S TLG+DAFL+LL+TQ+K+Q+P +P ++ VAQLA FS +E Sbjct: 15 LNTLQNPTP---TATNSTGTLGKDAFLQLLVTQMKNQNPLDPQDNTQFVAQLAQFSSLES 71 Query: 63 SVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSIS 98 + ST+ + KS+ QASS +G+++ S + Sbjct: 72 MQNLTSTVDTIATSYKSSQALQASSLVGRSVIIDSSSTT 110 >gi|85706208|ref|ZP_01037303.1| Possible FlgD protein [Roseovarius sp. 217] gi|85669372|gb|EAQ24238.1| Possible FlgD protein [Roseovarius sp. 217] Length = 230 Score = 82.7 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 39/135 (28%), Positives = 66/135 (48%), Gaps = 15/135 (11%) Query: 7 VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66 + K+ + + FLK+L TQ+++QDP P+++S+ QLA FS +EQ V Sbjct: 20 ATTSDNSLEKATGGFSTDFETFLKMLTTQLRNQDPLNPIESSDFAVQLATFSTVEQQVLT 79 Query: 67 NSTLQEL---LKSNNLAQASSYIGKN------ITNADGSIS--GVVN----AIQVSSTGL 111 N L +L + + L+Q S +IG +T + +S V+ A ++ +T Sbjct: 80 NDLLTDLGARIGAQGLSQVSGWIGMEALSELPVTFSGEPVSLLATVDPQAEAAEIVATNA 139 Query: 112 TAITVDNTEIPITTG 126 I V+ IP T+G Sbjct: 140 QGIIVNRQPIPTTSG 154 >gi|264676569|ref|YP_003276475.1| flagellar hook capping protein [Comamonas testosteroni CNB-2] gi|299531287|ref|ZP_07044697.1| flagellar hook capping protein [Comamonas testosteroni S44] gi|262207081|gb|ACY31179.1| flagellar hook capping protein [Comamonas testosteroni CNB-2] gi|298720694|gb|EFI61641.1| flagellar hook capping protein [Comamonas testosteroni S44] Length = 220 Score = 82.7 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 3/98 (3%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 ++ T + + QD FLKLL+ Q+ +QDP PM +E +Q+A + + Sbjct: 8 VDGTTTNTTSNTKNAVTNPNEAQDRFLKLLVAQLNNQDPMNPMDNAEMTSQMAQINTVTG 67 Query: 63 SVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 Q+N T+ + + + Q +S IG+ + ++ Sbjct: 68 IQQLNQTMASMSSQFTAMQVLQGTSMIGRTVLTEGNTL 105 >gi|291286228|ref|YP_003503044.1| flagellar hook capping protein [Denitrovibrio acetiphilus DSM 12809] gi|290883388|gb|ADD67088.1| flagellar hook capping protein [Denitrovibrio acetiphilus DSM 12809] Length = 232 Score = 82.7 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 18/138 (13%) Query: 4 NTEVNPTQQEFSK---SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 T V+ Q + S + ++ L Q FL L ITQ+++QDPT+PM S + Q A F+Q+ Sbjct: 6 TTTVDTKQYDTSDIEYNNTQGELSQSDFLNLFITQLQNQDPTDPMDDSAMMEQTATFTQV 65 Query: 61 EQSVQMNSTLQELL-------KSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTA 113 E M +L E+ + AS YIGK + + S G+ A Sbjct: 66 ELLTSMEKSLSEIAGGASNLNTQQLMMSASGYIGKLVEFDGNN--------TYLSDGVAA 117 Query: 114 ITVDNTEIPITTGIRISN 131 ++ + E+P T + I + Sbjct: 118 VSFEAEEVPFKTTVTIKD 135 >gi|317133482|ref|YP_004092796.1| flagellar hook capping protein [Ethanoligenens harbinense YUAN-3] gi|315471461|gb|ADU28065.1| flagellar hook capping protein [Ethanoligenens harbinense YUAN-3] Length = 156 Score = 82.7 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 57/116 (49%), Gaps = 15/116 (12%) Query: 24 GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQAS 83 G F L+ Q+++QDP EP S+ +AQ+A FS +EQ+ + L ++ + + Sbjct: 29 GMSDFFTLMTKQLEYQDPLEPTDNSQFMAQMAQFSMVEQTQK-------LAQTAGIQAGT 81 Query: 84 SYIGKNI--------TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 + +GK++ T + GVV A+ S + ++ +P+T R+++ Sbjct: 82 AMVGKDVLYTTTDASTGVSATSEGVVQAVDFSDSSTPQCYINGGWVPLTDVTRVTS 137 >gi|254496886|ref|ZP_05109734.1| flagellar basal body rod modification protein [Legionella drancourtii LLAP12] gi|254353905|gb|EET12592.1| flagellar basal body rod modification protein [Legionella drancourtii LLAP12] Length = 224 Score = 82.7 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 11/117 (9%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 N N T + + +K LGQ FL+L++ QI++QDP +P E ++QLA FS + Sbjct: 9 NGASNATTNQVAPLGAKN-LGQQDFLRLMVAQIQNQDPMQPQVNGEFLSQLAQFSTNDGV 67 Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVD 117 +M ++Q++ L+SN QAS+ +G+ + + + +++ G +D Sbjct: 68 SKMQESMQQMANSLQSNQALQASALVGRKVLVSS-------DHLKLDKEGDVKTAID 117 >gi|332284018|ref|YP_004415929.1| flagellar basal body rod modification protein [Pusillimonas sp. T7-7] gi|330427971|gb|AEC19305.1| flagellar basal body rod modification protein [Pusillimonas sp. T7-7] Length = 228 Score = 82.7 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 5/99 (5%) Query: 5 TEVNPTQQEFSKSKSKKTLG--QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 + + ++++ + +G QD FL LL+TQ+++QDP PM ++ +Q+A S + Sbjct: 9 GSTDSSAMSYAQAGTNSLMGDTQDRFLTLLVTQLQNQDPLNPMDNAQVTSQIAQLSTVNG 68 Query: 63 SVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSIS 98 Q+N+TL L + + QA+ IGK + IS Sbjct: 69 INQLNTTLLALSGQMDVSQSMQAAGLIGKEVLVPGSKIS 107 >gi|89056698|ref|YP_512149.1| flagellar basal body rod modification protein [Jannaschia sp. CCS1] gi|88866247|gb|ABD57124.1| basal-body rod modification protein FlgD [Jannaschia sp. CCS1] Length = 221 Score = 82.7 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 34/106 (32%), Positives = 56/106 (52%), Gaps = 4/106 (3%) Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67 T + + + + T D FL+LL TQ+++QDP P ++E AQLA FS +EQ V+ N Sbjct: 13 TATAVQDNTTAASITSDFDMFLRLLTTQMQNQDPLNPSDSTEYTAQLATFSGVEQQVETN 72 Query: 68 STLQEL---LKSNNLAQASSYIGKNIT-NADGSISGVVNAIQVSST 109 L++L S N+ Q S +IG + + +G +Q++ Sbjct: 73 DLLRDLQASFASMNMGQLSGWIGMEARADMPVNFTGQPTTVQITPN 118 >gi|152979993|ref|YP_001353110.1| flagellar basal body rod modification protein [Janthinobacterium sp. Marseille] gi|151280070|gb|ABR88480.1| FlgD flagellar hook capping protein [Janthinobacterium sp. Marseille] Length = 225 Score = 82.7 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 3/97 (3%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 + ++ + KS QD FLKLL+TQ+++QDP P+ ++ +QLA S + Sbjct: 14 SLLDQMNGAAASKKSTAEEAQDRFLKLLVTQMQNQDPLNPLDNAQVTSQLAQLSTVTGID 73 Query: 65 QMNSTLQELL---KSNNLAQASSYIGKNITNADGSIS 98 ++N TL+ L+ +S L QAS+ I + ++ Sbjct: 74 KLNGTLESLMGNYQSAQLLQASNMIDHGVLAPGSQLA 110 >gi|82702452|ref|YP_412018.1| flagellar basal body rod modification protein [Nitrosospira multiformis ATCC 25196] gi|82410517|gb|ABB74626.1| Flagellar hook capping protein [Nitrosospira multiformis ATCC 25196] Length = 222 Score = 82.7 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 9/94 (9%) Query: 6 EVNPTQQEF------SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59 PT F S +K + QD FLKLL+TQ+K+QDP P+ ++ QLA S Sbjct: 6 NTQPTSNPFAAYGTRSTAKPAEEDLQDRFLKLLVTQMKNQDPLNPLDNAQVTTQLAQIST 65 Query: 60 MEQSVQMNSTLQELLKS---NNLAQASSYIGKNI 90 + ++N+T++ + S QA+ IG+ + Sbjct: 66 VNGVERLNATIRTIADSFTAGQSLQAAGMIGREV 99 >gi|331269320|ref|YP_004395812.1| flagellar hook assembly protein FlgD [Clostridium botulinum BKT015925] gi|329125870|gb|AEB75815.1| flagellar hook assembly protein FlgD [Clostridium botulinum BKT015925] Length = 275 Score = 82.3 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 12/116 (10%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 +N T + K + ++AFLK+L ++ +QDP +++ ++QLA FS +EQ Sbjct: 45 VNHYNKATNRGTKIVKKGHEMDKNAFLKILTAELTNQDPMNAKDSTQYISQLAQFSGLEQ 104 Query: 63 SVQMNSTLQELLKSNNLAQASSYIGKNIT-----NADGSISGVVNAIQVSSTGLTA 113 +NST+ + A S +GK + + G V ++ + Sbjct: 105 MANLNSTM-------SFNSAGSMVGKTLALSSYDDYGRQYGGTVTNVRKDGDDIIL 153 >gi|54297181|ref|YP_123550.1| flagellar basal body rod modification protein [Legionella pneumophila str. Paris] gi|53750966|emb|CAH12377.1| Flagellar basal-body rod modification protein FlgD [Legionella pneumophila str. Paris] Length = 225 Score = 82.3 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 30/85 (35%), Positives = 52/85 (61%), Gaps = 3/85 (3%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--- 73 S ++ LGQ FL+L++ Q+++QDP +P E ++QLA FS + +M +LQ+L Sbjct: 22 SDKRQNLGQQDFLRLMVAQVQNQDPLQPQANGEFLSQLAQFSTNDGITKMQESLQQLASS 81 Query: 74 LKSNNLAQASSYIGKNITNADGSIS 98 L+SN QAS+ +G+ + ++S Sbjct: 82 LQSNQALQASALVGRKVLVNSNTLS 106 >gi|114046837|ref|YP_737387.1| flagellar basal body rod modification protein [Shewanella sp. MR-7] gi|113888279|gb|ABI42330.1| flagellar hook capping protein [Shewanella sp. MR-7] Length = 256 Score = 82.3 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 12/133 (9%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS-- 68 Q + L Q+ F LL Q+ QDP +P+ + +AQ+A FS ++ ++N Sbjct: 45 SQSAVPEAKSQQLTQEDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGISKLNDEI 104 Query: 69 -TLQELLKSNNLAQASSYIGK---------NITNADGSISGVVNAIQVSSTGLTAITVDN 118 L ++ S+ QAS +G+ N++ ++SGVV+ + D Sbjct: 105 VNLNSVMTSSQALQASGLVGRKVLIPTDTGNVSVESPTLSGVVSTPDKIPVINVRVLDDK 164 Query: 119 TEIPITTGIRISN 131 ++ T I S+ Sbjct: 165 GQVVSTFNIDGSD 177 >gi|260574415|ref|ZP_05842419.1| flagellar hook capping protein [Rhodobacter sp. SW2] gi|259023311|gb|EEW26603.1| flagellar hook capping protein [Rhodobacter sp. SW2] Length = 217 Score = 82.3 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 3/79 (3%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---L 74 K+ + FL+++ TQ+K+QDP P+ +++ QLA FS +EQ + NS L+ + Sbjct: 21 KTAIASDFETFLRMMTTQLKNQDPMNPIDSADYAVQLATFSSVEQQAKTNSLLEAMGAQF 80 Query: 75 KSNNLAQASSYIGKNITNA 93 +AQ + ++G A Sbjct: 81 GLMGMAQMAGWVGHEARAA 99 >gi|46906947|ref|YP_013336.1| flagellar basal body rod modification protein [Listeria monocytogenes serotype 4b str. F2365] gi|47091658|ref|ZP_00229454.1| flagellar hook assembly protein FlgD [Listeria monocytogenes str. 4b H7858] gi|217965206|ref|YP_002350884.1| flagellar hook capping protein [Listeria monocytogenes HCC23] gi|226223327|ref|YP_002757434.1| flagellar hook assembly protein [Listeria monocytogenes Clip81459] gi|254824024|ref|ZP_05229025.1| flagellar hook assembly protein FlgD [Listeria monocytogenes FSL J1-194] gi|254853100|ref|ZP_05242448.1| flagellar hook assembly protein FlgD [Listeria monocytogenes FSL R2-503] gi|254932024|ref|ZP_05265383.1| flagellar hook assembly protein FlgD [Listeria monocytogenes HPB2262] gi|254994098|ref|ZP_05276288.1| flagellar basal body rod modification protein [Listeria monocytogenes FSL J2-064] gi|255521909|ref|ZP_05389146.1| flagellar basal body rod modification protein [Listeria monocytogenes FSL J1-175] gi|290893993|ref|ZP_06556968.1| flagellar hook assembly protein FlgD [Listeria monocytogenes FSL J2-071] gi|300764508|ref|ZP_07074501.1| flagellar hook assembly protein FlgD [Listeria monocytogenes FSL N1-017] gi|46880213|gb|AAT03513.1| flagellar hook assembly protein FlgD [Listeria monocytogenes serotype 4b str. F2365] gi|47019977|gb|EAL10714.1| flagellar hook assembly protein FlgD [Listeria monocytogenes str. 4b H7858] gi|217334476|gb|ACK40270.1| flagellar hook capping protein [Listeria monocytogenes HCC23] gi|225875789|emb|CAS04492.1| Putative flagellar hook assembly protein [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258606449|gb|EEW19057.1| flagellar hook assembly protein FlgD [Listeria monocytogenes FSL R2-503] gi|290556439|gb|EFD89978.1| flagellar hook assembly protein FlgD [Listeria monocytogenes FSL J2-071] gi|293583576|gb|EFF95608.1| flagellar hook assembly protein FlgD [Listeria monocytogenes HPB2262] gi|293593252|gb|EFG01013.1| flagellar hook assembly protein FlgD [Listeria monocytogenes FSL J1-194] gi|300514862|gb|EFK41916.1| flagellar hook assembly protein FlgD [Listeria monocytogenes FSL N1-017] gi|307570235|emb|CAR83414.1| flagellar hook assembly protein [Listeria monocytogenes L99] gi|313610130|gb|EFR85449.1| flagellar hook capping protein [Listeria monocytogenes FSL F2-208] gi|328467263|gb|EGF38343.1| flagellar basal body rod modification protein [Listeria monocytogenes 1816] gi|328475659|gb|EGF46408.1| flagellar basal body rod modification protein [Listeria monocytogenes 220] gi|332311121|gb|EGJ24216.1| Flagellar hook assembly protein FlgD [Listeria monocytogenes str. Scott A] Length = 140 Score = 82.3 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 39/126 (30%), Positives = 69/126 (54%), Gaps = 7/126 (5%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 S KTLG+D F+KL +T +++QDP+ P+ +E ++Q+A S MEQ M + + Sbjct: 14 TNNVVTSSVSKTLGKDDFMKLFLTSLQYQDPSSPLDTNEMMSQMAQLSLMEQVANMTTAV 73 Query: 71 QEL---LKSNNLAQASSYIGKN---ITNADGSISGVVNAIQVSSTGLTAITVDNTE-IPI 123 +L +++ L A ++IGK+ ++ ISG V ++Q ++ G+ DN +P+ Sbjct: 74 DKLSEQAQNSALQSAVNFIGKDIKGVSLNGEVISGKVESVQQTTNGVMLKLKDNDSLVPM 133 Query: 124 TTGIRI 129 T I Sbjct: 134 TYVTEI 139 >gi|310816816|ref|YP_003964780.1| flagellar hook capping protein, putative [Ketogulonicigenium vulgare Y25] gi|308755551|gb|ADO43480.1| flagellar hook capping protein, putative [Ketogulonicigenium vulgare Y25] Length = 217 Score = 82.3 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 3/73 (4%) Query: 24 GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN---NLA 80 + FLK+L+ Q+++QDP P+ ++E AQLA FS +EQ VQ N L +L+ NL Sbjct: 27 DFETFLKMLVAQVQNQDPLNPIDSNEYAAQLATFSGVEQQVQTNQLLNQLIAQTGIGNLG 86 Query: 81 QASSYIGKNITNA 93 S +IGK++ A Sbjct: 87 AMSGWIGKDVRVA 99 >gi|119775451|ref|YP_928191.1| flagellar basal body rod modification protein [Shewanella amazonensis SB2B] gi|119767951|gb|ABM00522.1| flagellar hook capping protein [Shewanella amazonensis SB2B] Length = 242 Score = 82.3 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 63/133 (47%), Gaps = 12/133 (9%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS-- 68 +E K+ L Q+ F LL Q+ QDP +P++ + +AQ+A FS ++ +N Sbjct: 31 TKEAVPEAKKQELTQEDFFALLSQQLSMQDPFKPVENDQMIAQMASFSTVDGIANLNDHI 90 Query: 69 -TLQELLKSNNLAQASSYIGK---------NITNADGSISGVVNAIQVSSTGLTAITVDN 118 L ++ S+ QAS +G+ +++ + ++ GV++ + T + I D Sbjct: 91 VNLNTVMTSSQALQASGLVGQKVLIPSASGHVSAEEPNLKGVISTSKPIETIMVRIEDDK 150 Query: 119 TEIPITTGIRISN 131 ++ T + S+ Sbjct: 151 GQLVKTFSVDGSD 163 >gi|240145499|ref|ZP_04744100.1| basal-body rod modification protein FlgD [Roseburia intestinalis L1-82] gi|257202314|gb|EEV00599.1| basal-body rod modification protein FlgD [Roseburia intestinalis L1-82] gi|291536009|emb|CBL09121.1| Flagellar hook capping protein [Roseburia intestinalis M50/1] Length = 251 Score = 82.3 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 15/118 (12%) Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA 80 LG D FL+LL ++++QDP EP +E VAQLA FSQME ++ M ST++ + Sbjct: 26 NDLGYDQFLQLLCAEMQYQDPLEPTSNTEYVAQLATFSQMEATLGMQSTIES-------S 78 Query: 81 QASSYIGKNI-------TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 A++ +GK + T + G V+ +Q G I V+ ++ ++++ Sbjct: 79 NANALVGKYVIIKTTSSTGETTATEGFVDYVQ-KENGEQKICVNGVLYSLSDVYQVAD 135 >gi|16802738|ref|NP_464223.1| flagellar basal body rod modification protein [Listeria monocytogenes EGD-e] gi|47095262|ref|ZP_00232873.1| flagellar hook assembly protein FlgD [Listeria monocytogenes str. 1/2a F6854] gi|116872085|ref|YP_848866.1| flagellar basal body rod modification protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|224498778|ref|ZP_03667127.1| flagellar basal body rod modification protein [Listeria monocytogenes Finland 1988] gi|224501999|ref|ZP_03670306.1| flagellar basal body rod modification protein [Listeria monocytogenes FSL R2-561] gi|254829353|ref|ZP_05234040.1| flgD [Listeria monocytogenes FSL N3-165] gi|254830313|ref|ZP_05234968.1| flagellar basal body rod modification protein [Listeria monocytogenes 10403S] gi|254900068|ref|ZP_05259992.1| flagellar basal body rod modification protein [Listeria monocytogenes J0161] gi|254911379|ref|ZP_05261391.1| flagellar hook assembly protein FlgD [Listeria monocytogenes J2818] gi|254935706|ref|ZP_05267403.1| flgD [Listeria monocytogenes F6900] gi|255028842|ref|ZP_05300793.1| flagellar basal body rod modification protein [Listeria monocytogenes LO28] gi|284801026|ref|YP_003412891.1| flagellar basal body rod modification protein [Listeria monocytogenes 08-5578] gi|284994168|ref|YP_003415936.1| flagellar basal body rod modification protein [Listeria monocytogenes 08-5923] gi|16410085|emb|CAC98774.1| lmo0696 [Listeria monocytogenes EGD-e] gi|47016333|gb|EAL07255.1| flagellar hook assembly protein FlgD [Listeria monocytogenes str. 1/2a F6854] gi|116740963|emb|CAK20083.1| flagellar hook assembly protein FlgD [Listeria welshimeri serovar 6b str. SLCC5334] gi|258601766|gb|EEW15091.1| flgD [Listeria monocytogenes FSL N3-165] gi|258608289|gb|EEW20897.1| flgD [Listeria monocytogenes F6900] gi|284056588|gb|ADB67529.1| flagellar basal body rod modification protein [Listeria monocytogenes 08-5578] gi|284059635|gb|ADB70574.1| flagellar basal body rod modification protein [Listeria monocytogenes 08-5923] gi|293589316|gb|EFF97650.1| flagellar hook assembly protein FlgD [Listeria monocytogenes J2818] Length = 140 Score = 82.3 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 39/132 (29%), Positives = 71/132 (53%), Gaps = 7/132 (5%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 + + S KTLG+D F+KL +T +++QDP+ P+ +E ++Q+A S MEQ Sbjct: 8 SGASQDTNNAVTSSVSKTLGKDDFMKLFLTSLQYQDPSSPLDTNEMMSQMAQLSLMEQVA 67 Query: 65 QMNSTLQEL---LKSNNLAQASSYIGKN---ITNADGSISGVVNAIQVSSTGLTAITVDN 118 M + + +L +++ L A ++IGK+ ++ ISG V ++Q ++ G+ DN Sbjct: 68 NMTTAVDKLSEQAQNSALQSAVNFIGKDIKGVSLNGEVISGKVESVQQTTNGVMLKLKDN 127 Query: 119 TE-IPITTGIRI 129 +P+T I Sbjct: 128 DSLVPMTYVTEI 139 >gi|54294162|ref|YP_126577.1| flagellar basal body rod modification protein [Legionella pneumophila str. Lens] gi|53753994|emb|CAH15465.1| Flagellar basal-body rod modification protein FlgD [Legionella pneumophila str. Lens] gi|307609976|emb|CBW99505.1| flagellar basal-body rod modification protein FlgD [Legionella pneumophila 130b] Length = 225 Score = 82.3 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 30/85 (35%), Positives = 52/85 (61%), Gaps = 3/85 (3%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--- 73 S ++ LGQ FL+L++ Q+++QDP +P E ++QLA FS + +M +LQ+L Sbjct: 22 SDKRQNLGQQDFLRLMVAQVQNQDPLQPQANGEFLSQLAQFSTNDGITKMQESLQQLASS 81 Query: 74 LKSNNLAQASSYIGKNITNADGSIS 98 L+SN QAS+ +G+ + ++S Sbjct: 82 LQSNQALQASALVGRKVLVNSNTLS 106 >gi|302037612|ref|YP_003797934.1| flagellar hook capping protein FlgD (fragment) [Candidatus Nitrospira defluvii] gi|300605676|emb|CBK42009.1| Flagellar hook capping protein FlgD (fragment) [Candidatus Nitrospira defluvii] Length = 101 Score = 82.3 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 33/84 (39%), Positives = 51/84 (60%), Gaps = 3/84 (3%) Query: 1 MEIN---TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVF 57 M+I+ T+ P + K LG+D FLKLL+TQ++HQDP +PM+ + VAQ A F Sbjct: 6 MDISKVITQATPPDSSTPTTDGPKPLGKDDFLKLLVTQLQHQDPLKPMENEDFVAQTAQF 65 Query: 58 SQMEQSVQMNSTLQELLKSNNLAQ 81 SQ+EQ ++ S +++ + AQ Sbjct: 66 SQLEQMSKLVSLMEKSVTLQENAQ 89 >gi|148358805|ref|YP_001250012.1| flagellar basal body rod modification protein FlgD [Legionella pneumophila str. Corby] gi|296106850|ref|YP_003618550.1| flagellar basal-body rod modification protein FlgD [Legionella pneumophila 2300/99 Alcoy] gi|148280578|gb|ABQ54666.1| flagellar basal body rod modification protein FlgD [Legionella pneumophila str. Corby] gi|295648751|gb|ADG24598.1| flagellar basal-body rod modification protein FlgD [Legionella pneumophila 2300/99 Alcoy] Length = 225 Score = 82.3 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 30/85 (35%), Positives = 52/85 (61%), Gaps = 3/85 (3%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--- 73 S ++ LGQ FL+L++ Q+++QDP +P E ++QLA FS + +M +LQ+L Sbjct: 22 SDKRQNLGQQDFLRLMVAQVQNQDPLQPQANGEFLSQLAQFSTNDGITKMQESLQQLASS 81 Query: 74 LKSNNLAQASSYIGKNITNADGSIS 98 L+SN QAS+ +G+ + ++S Sbjct: 82 LQSNQALQASALVGRKVLVNSNTLS 106 >gi|317406202|gb|EFV86451.1| basal-body rod modification protein FlgD [Achromobacter xylosoxidans C54] Length = 231 Score = 82.3 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 3/124 (2%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 Q + S S QD FLKLL+TQ+K+QDP PM+ +E +QLA S +E + +T+ Sbjct: 16 AQTGANSASTAQGLQDQFLKLLVTQLKNQDPLNPMQNAELTSQLAQISTVEGITNLKNTM 75 Query: 71 QELLKS---NNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGI 127 + + A + IGK + ++ V+ + +T +D + + Sbjct: 76 LAISGQIDVSQSMNAVAMIGKGVLVPGSNVKVGVSTENPAERVVTPYGIDLQKDAAKVQV 135 Query: 128 RISN 131 RI++ Sbjct: 136 RIAD 139 >gi|269103191|ref|ZP_06155888.1| flagellar basal-body rod modification protein FlgD [Photobacterium damselae subsp. damselae CIP 102761] gi|268163089|gb|EEZ41585.1| flagellar basal-body rod modification protein FlgD [Photobacterium damselae subsp. damselae CIP 102761] Length = 243 Score = 81.9 bits (201), Expect = 2e-14, Method: Composition-based stats. Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 11/111 (9%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 ++ + Q+ K+ + L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ Sbjct: 17 QLKGMHDKKVQQEQKTTGQNALKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVD 76 Query: 62 QSVQMNST---LQELLKSNNLAQASSYIGKNI--------TNADGSISGVV 101 +MN L L SN QASS +G ++ DG++SGVV Sbjct: 77 GITKMNDQFGVLNTALTSNQALQASSLVGLDVLIPSATAMKTQDGAMSGVV 127 >gi|329901229|ref|ZP_08272754.1| Flagellar basal-body rod modification protein FlgD [Oxalobacteraceae bacterium IMCC9480] gi|327549161|gb|EGF33753.1| Flagellar basal-body rod modification protein FlgD [Oxalobacteraceae bacterium IMCC9480] Length = 224 Score = 81.9 bits (201), Expect = 2e-14, Method: Composition-based stats. Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 3/77 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN---LAQ 81 QD F+KLL+TQ+K+QDP P+ ++ +QLA S + +MN+TL+ ++ S Q Sbjct: 33 QDRFMKLLVTQMKNQDPLNPLDNAQVTSQLAQLSTVSGIDKMNTTLESMIASQQSGSAVQ 92 Query: 82 ASSYIGKNITNADGSIS 98 A+ IG + ++ Sbjct: 93 AAGMIGHGVLAPGKQMA 109 >gi|237653584|ref|YP_002889898.1| flagellar hook capping protein [Thauera sp. MZ1T] gi|237624831|gb|ACR01521.1| flagellar hook capping protein [Thauera sp. MZ1T] Length = 224 Score = 81.9 bits (201), Expect = 2e-14, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 57/122 (46%), Gaps = 8/122 (6%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDA-FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 +I V +SK+ + ++ FL LL TQ+K+QDP PM+ +E +QLA S + Sbjct: 9 DIAASVLAKINTREESKASASGDMNSRFLTLLTTQLKNQDPLNPMENAEVTSQLAQMSTV 68 Query: 61 EQSVQMNSTLQELLKSNNL---AQASSYIGKNITNADGSIS----GVVNAIQVSSTGLTA 113 + ++N Q + + QA++ +G+ + ++ G V ++ + + Sbjct: 69 DGIERLNKMFQSFVDGQSAYDSMQAAALVGRGVLVEGKKLTLTEAGAVGGFELDAAADSV 128 Query: 114 IT 115 + Sbjct: 129 VL 130 >gi|221069323|ref|ZP_03545428.1| flagellar hook capping protein [Comamonas testosteroni KF-1] gi|220714346|gb|EED69714.1| flagellar hook capping protein [Comamonas testosteroni KF-1] Length = 220 Score = 81.9 bits (201), Expect = 2e-14, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 3/98 (3%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 ++ T S + QD FLKLL+ Q+ +QDP PM +E +Q+A + + Sbjct: 8 VDGTTTNTTSNTKNSVTDPNEAQDRFLKLLVAQLNNQDPMNPMDNAEMTSQMAQINTVTG 67 Query: 63 SVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 Q+N T+ + + + Q +S IG+ + ++ Sbjct: 68 IQQLNQTMASMSSQFSAMQVLQGTSMIGRTVLTEGNTL 105 >gi|330875982|gb|EGH10131.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330967089|gb|EGH67349.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 229 Score = 81.9 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 34/87 (39%), Positives = 55/87 (63%), Gaps = 3/87 (3%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL- 73 + + S TLG+DAFL+LL+TQ+K+Q+P +P ++ VAQLA FS +E + ST+ + Sbjct: 25 TATNSTGTLGKDAFLQLLVTQMKNQNPLDPQDNTQFVAQLAQFSSLESMQNLTSTVDTIA 84 Query: 74 --LKSNNLAQASSYIGKNITNADGSIS 98 KS+ QASS +G+++ S + Sbjct: 85 TSYKSSQALQASSLVGRSVIIDSSSTT 111 >gi|148380614|ref|YP_001255155.1| flagellar hook capping protein [Clostridium botulinum A str. ATCC 3502] gi|153930937|ref|YP_001384900.1| flagellar hook capping protein [Clostridium botulinum A str. ATCC 19397] gi|153937540|ref|YP_001388369.1| flagellar hook capping protein [Clostridium botulinum A str. Hall] gi|170759186|ref|YP_001787977.1| flagellar hook capping protein [Clostridium botulinum A3 str. Loch Maree] gi|148290098|emb|CAL84217.1| putative flagellar hook assembly protein [Clostridium botulinum A str. ATCC 3502] gi|152926981|gb|ABS32481.1| flagellar hook capping protein [Clostridium botulinum A str. ATCC 19397] gi|152933454|gb|ABS38953.1| flagellar hook capping protein [Clostridium botulinum A str. Hall] gi|169406175|gb|ACA54586.1| flagellar hook capping protein [Clostridium botulinum A3 str. Loch Maree] Length = 265 Score = 81.9 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 12/97 (12%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77 K + L ++AF K+L ++ +QDPT +E V+QLA FS +EQ +NS ++ Sbjct: 48 KKGQDLDKNAFFKILAAELANQDPTNAKDGTEYVSQLAQFSSLEQMANLNSMMK------ 101 Query: 78 NLAQASSYIGKNIT-----NADGSISGVVNAIQVSST 109 L ASS+IGK + +G+V + + Sbjct: 102 -LTGASSFIGKVVLLRRFDEQGNQYAGIVRNVIKNGD 137 Score = 36.8 bits (84), Expect = 0.89, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 9/83 (10%) Query: 56 VFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGS--ISGVVNAIQVSSTGL-- 111 F+ + + + +N+L A S IGKN+ DG+ +SGVV + + G+ Sbjct: 152 EFAMEDVLNITDDINENSKYNNDLLNAVSLIGKNVLMDDGTEKLSGVVKGVVRNGLGVSI 211 Query: 112 -TAITVDNTE----IPITTGIRI 129 +T D E IP + Sbjct: 212 RVTVTKDGKEQDIYIPFEYVTNV 234 >gi|23092314|gb|AAN08639.1| FlgD [Aeromonas hydrophila] Length = 244 Score = 81.9 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 37/130 (28%), Positives = 67/130 (51%), Gaps = 11/130 (8%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 +N T Q + KK L Q +FLKLL Q+ +QDP +P+ ++ ++Q++ S E Sbjct: 7 NVNGISRTTSQTAGTTTPKKELDQASFLKLLTMQLSYQDPFKPVDNAQMLSQMSSMSTSE 66 Query: 62 QSVQMNSTLQEL---LKSNNLAQASSYIGKNI--------TNADGSISGVVNAIQVSSTG 110 +++ + +L + S+ QASS +G+N+ + +GS+SGVV + Sbjct: 67 GIASLSTQMGKLNDQMISSQALQASSLVGQNVLLQSNMGYLDKEGSLSGVVAVGTTNKYS 126 Query: 111 LTAITVDNTE 120 IT++N + Sbjct: 127 NIKITIENEK 136 >gi|30248321|ref|NP_840391.1| flagellar basal body rod modification protein [Nitrosomonas europaea ATCC 19718] gi|30138207|emb|CAD84215.1| putative basal-body rod modification protein FlgD [Nitrosomonas europaea ATCC 19718] Length = 223 Score = 81.9 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 52/98 (53%), Gaps = 3/98 (3%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 ++ + + + QD FLKLL+TQ+++QDP PM +E +Q+A S + Sbjct: 10 VSELLASNSGSIKSYRKDEEDPQDRFLKLLVTQMQNQDPLSPMDNAEVTSQMAQISTVSG 69 Query: 63 SVQMNSTLQELLKSNNL---AQASSYIGKNITNADGSI 97 ++N+TL++L+ ++ +A++ IG+ + + Sbjct: 70 IDKLNTTLEKLVADSDARRSFEAATMIGRGVLVPGTDM 107 >gi|226327747|ref|ZP_03803265.1| hypothetical protein PROPEN_01620 [Proteus penneri ATCC 35198] gi|225203451|gb|EEG85805.1| hypothetical protein PROPEN_01620 [Proteus penneri ATCC 35198] Length = 270 Score = 81.9 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 3/97 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 NT + + KS + FL LLITQ+K+QDPT PM+ +E +QLA S +E Sbjct: 7 NTIIGDAPSSYHTKKSGSEDIKGNFLTLLITQMKNQDPTNPMQNNELTSQLAQISTVEGI 66 Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 +N T+ + + + +ASS +G + + I Sbjct: 67 ETLNKTVNNIVGQIDQSQALRASSLVGHGVMVSGNKI 103 >gi|289679030|ref|ZP_06499920.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. syringae FF5] gi|330899400|gb|EGH30819.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. japonica str. M301072PT] gi|330943206|gb|EGH45613.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. pisi str. 1704B] gi|330975975|gb|EGH76041.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 229 Score = 81.9 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 39/99 (39%), Positives = 61/99 (61%), Gaps = 6/99 (6%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 +NT NPT + + S TLG+D+FL+LL+TQ+K+Q+P +P ++ VAQLA FS +E Sbjct: 16 LNTLQNPTP---TATNSTGTLGKDSFLQLLVTQMKNQNPLDPQDNTQFVAQLAQFSSLES 72 Query: 63 SVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSIS 98 + ST+ + KS+ QASS +G+++ S S Sbjct: 73 MQNLTSTVDTIASSYKSSQALQASSLVGRSVIIDASSTS 111 >gi|78776231|ref|YP_392546.1| flagellar hook capping protein [Sulfurimonas denitrificans DSM 1251] gi|78496771|gb|ABB43311.1| Flagellar hook capping protein [Sulfurimonas denitrificans DSM 1251] Length = 221 Score = 81.9 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 32/99 (32%), Positives = 53/99 (53%), Gaps = 3/99 (3%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 +N + + +K K LG+D F+KLL+ +++HQDPTEPM + + ++Q + + +E Sbjct: 8 LNAATHAESAAANAAKDKTALGKDDFMKLLLVELQHQDPTEPMDSEKILSQTSQLATLEA 67 Query: 63 SVQMNSTLQELLKSNNLAQ---ASSYIGKNITNADGSIS 98 S N L EL S + +Q S IGK +I+ Sbjct: 68 SENTNKALSELAASMSASQQFSTVSAIGKTADLGSNAIT 106 >gi|256370962|ref|YP_003108786.1| flagellar hook capping protein [Acidimicrobium ferrooxidans DSM 10331] gi|256007546|gb|ACU53113.1| flagellar hook capping protein [Acidimicrobium ferrooxidans DSM 10331] Length = 159 Score = 81.9 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 35/112 (31%), Positives = 64/112 (57%), Gaps = 3/112 (2%) Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA 80 +L + FL LL+T++++Q+P PM S+ V+Q + S++E + S L ++ S + Sbjct: 24 ASLTANEFLNLLVTELQNQNPLSPMDPSQMVSQTSSLSEVELLSTIQSALTQMASSQGIL 83 Query: 81 QASSYIGKNITNADGS--ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 ASS IG+++T DGS ++G V+ + S+ G+ + V +PI I + Sbjct: 84 SASSLIGQSVTYQDGSGEVAGQVSGVGQSANGVV-LDVGGQSVPIANVIAVG 134 >gi|241766919|ref|ZP_04764725.1| flagellar hook capping protein [Acidovorax delafieldii 2AN] gi|241362623|gb|EER58471.1| flagellar hook capping protein [Acidovorax delafieldii 2AN] Length = 220 Score = 81.9 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 45/86 (52%), Gaps = 3/86 (3%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL- 73 + + QD FLKLL+ Q+ +QDP P+ ++ +Q+A + + Q+N T++ + Sbjct: 22 ADPATDPNAAQDRFLKLLVAQLNNQDPMNPLDNAQMTSQMAQINTVTGIQQLNQTMKSMA 81 Query: 74 --LKSNNLAQASSYIGKNITNADGSI 97 + + Q +S IG+++ ++ Sbjct: 82 DQFSALQVLQGASMIGRSVVTEGNNL 107 >gi|149908760|ref|ZP_01897421.1| LfgD [Moritella sp. PE36] gi|149808302|gb|EDM68241.1| LfgD [Moritella sp. PE36] Length = 218 Score = 81.9 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 63/127 (49%), Gaps = 7/127 (5%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 + + NP Q + S L ++ FL++++ QIK+QDP +P+ +E V+QLA FS + Sbjct: 4 INNSNRTNPAQTSEVTANSALGL-KNEFLQMMVAQIKNQDPLDPLDGTEYVSQLAQFSMV 62 Query: 61 EQSVQM---NSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVD 117 E + S+ E+L + + Q+++ IG + +G+ +G+ + Sbjct: 63 EGVEGLRAGQSSQAEMLYTQQVLQSTALIGTTVLVPS---TGIAAKQGEKPSGVIRLDGA 119 Query: 118 NTEIPIT 124 E+ +T Sbjct: 120 ADEVTLT 126 >gi|254436854|ref|ZP_05050348.1| flagellar hook capping protein, putative [Octadecabacter antarcticus 307] gi|198252300|gb|EDY76614.1| flagellar hook capping protein, putative [Octadecabacter antarcticus 307] Length = 220 Score = 81.9 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 33/97 (34%), Positives = 52/97 (53%), Gaps = 8/97 (8%) Query: 1 MEINTEVNPTQQEFSKSKSKKT-----LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55 MEI+ + P Q S +++ + + FLK+L Q+++QDP P +SE QLA Sbjct: 1 MEISPALTPVTQPSSAPQTETSKTVISSDFETFLKMLTVQMENQDPLNPTDSSEYAQQLA 60 Query: 56 VFSQMEQSVQMNSTLQELLKSNN---LAQASSYIGKN 89 FS +EQ+V N L L+ N +AQ + ++GK Sbjct: 61 TFSGVEQAVLTNDLLSALMVQMNTTGMAQMADWVGKE 97 >gi|328542761|ref|YP_004302870.1| flagellar hook capping protein [polymorphum gilvum SL003B-26A1] gi|326412507|gb|ADZ69570.1| Flagellar hook capping protein [Polymorphum gilvum SL003B-26A1] Length = 220 Score = 81.9 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 42/128 (32%), Positives = 70/128 (54%), Gaps = 9/128 (7%) Query: 2 EINTEVNPTQQEFSKSKSKKTL--GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59 E+ + + + S SKS++TL D FL LL TQIK+QDP +P+ ++ QL +S Sbjct: 3 EVGSTTSASATTSSSSKSRETLLGSYDLFLTLLTTQIKNQDPLDPLDTAQFTNQLVQYSS 62 Query: 60 MEQSVQMNSTLQELLKSNNLAQASSYI---GKNITNADGSI---SGVVN-AIQVSSTGLT 112 +EQS+ N+ L++L+ S QAS Y+ G +T + + SG + A +VS Sbjct: 63 VEQSILTNTYLEQLMASVKSGQASGYVSYLGAEVTASGDTAMLESGSASWAYKVSEDATG 122 Query: 113 AITVDNTE 120 + + N++ Sbjct: 123 FVKIRNSD 130 >gi|297538895|ref|YP_003674664.1| flagellar hook capping protein [Methylotenera sp. 301] gi|297258242|gb|ADI30087.1| flagellar hook capping protein [Methylotenera sp. 301] Length = 225 Score = 81.5 bits (200), Expect = 3e-14, Method: Composition-based stats. Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 3/95 (3%) Query: 7 VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66 ++ S +KS QD F+ LLITQ+K+QDP PM ++ +Q+A S + ++ Sbjct: 16 LDSVNGTSSSAKSSVDTAQDRFMTLLITQMKNQDPLNPMDNAQVTSQMAQLSTVTGINKL 75 Query: 67 NSTLQELLKSNNLA---QASSYIGKNITNADGSIS 98 NST++ L+ S QA++ IG N+ S++ Sbjct: 76 NSTVESLMSSMQSGQSYQAANMIGHNVLVPGTSVT 110 >gi|291519590|emb|CBK74811.1| Flagellar hook capping protein [Butyrivibrio fibrisolvens 16/4] Length = 273 Score = 81.5 bits (200), Expect = 3e-14, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 54/110 (49%), Gaps = 9/110 (8%) Query: 24 GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQAS 83 Q+ FL+LL+ ++++QDP EP + VAQLA F+Q+E + + + + +A+ Sbjct: 45 NQEMFLQLLVAEMQYQDPLEPTDNGQYVAQLASFTQIEAIQSVQNDMATI-------EAN 97 Query: 84 SYIGKNITNADGS--ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 S +GK + D + + G VN + G + V+ + + + Sbjct: 98 SLVGKYVVINDNNKEVRGKVNFVSQDDDGTMYVNVNEKNYKVDDIESVVD 147 >gi|322806986|emb|CBZ04556.1| flagellar basal-body rod modification protein FlgD [Clostridium botulinum H04402 065] Length = 270 Score = 81.5 bits (200), Expect = 3e-14, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 12/97 (12%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77 K + L ++AF K+L ++ +QDPT +E V+QLA FS +EQ +NS ++ Sbjct: 53 KKGQDLDKNAFFKILAAELANQDPTNAKDGTEYVSQLAQFSSLEQMANLNSMMK------ 106 Query: 78 NLAQASSYIGKNIT-----NADGSISGVVNAIQVSST 109 L AS++IGK + +G+V + + Sbjct: 107 -LTGASNFIGKVVLLRRFDEQGNQYAGIVRNVIKNGD 142 Score = 36.1 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 9/83 (10%) Query: 56 VFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADG--SISGVVNAIQVSSTGL-- 111 F+ + + + +N+L A + IGKN+ DG +SGVV + + G+ Sbjct: 157 EFAMEDVLNITDDINENSKYNNDLLNAVNLIGKNVLMDDGKEKLSGVVKGVVRNGLGVSI 216 Query: 112 -TAITVDNTE----IPITTGIRI 129 IT D E +P + Sbjct: 217 KVTITKDGKEQDVYVPFEYVTNV 239 >gi|268589983|ref|ZP_06124204.1| basal-body rod modification protein FlgD [Providencia rettgeri DSM 1131] gi|291314701|gb|EFE55154.1| basal-body rod modification protein FlgD [Providencia rettgeri DSM 1131] Length = 285 Score = 81.5 bits (200), Expect = 3e-14, Method: Composition-based stats. Identities = 26/98 (26%), Positives = 53/98 (54%), Gaps = 4/98 (4%) Query: 4 NTEVNPTQQEFSKSKSKKTLG-QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 NT P + K ++ +D FLK+++TQ+++QDPT+PM+ ++ +QLA + +E Sbjct: 13 NTTAGPQPAASNVPKKSQSDDMRDTFLKMIVTQMQNQDPTKPMENTDLTSQLAQIATLES 72 Query: 63 SVQMNSTLQELLK---SNNLAQASSYIGKNITNADGSI 97 +++ ++ + + S QA+ +GK + I Sbjct: 73 MNKLSDSVSGISQQIGSGQSLQATQLVGKGVLIPRNEI 110 >gi|168180919|ref|ZP_02615583.1| flagellar hook capping protein [Clostridium botulinum NCTC 2916] gi|182668206|gb|EDT80185.1| flagellar hook capping protein [Clostridium botulinum NCTC 2916] Length = 270 Score = 81.5 bits (200), Expect = 3e-14, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 12/97 (12%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77 K + L ++AF K+L ++ +QDPT +E V+QLA FS +EQ +NS ++ Sbjct: 53 KKGQDLDKNAFFKILAAELANQDPTNAKDGTEYVSQLAQFSSLEQMANLNSMMK------ 106 Query: 78 NLAQASSYIGKNIT-----NADGSISGVVNAIQVSST 109 L AS++IGK + +G+V + + Sbjct: 107 -LTGASNFIGKVVLLRRFDEQGNQYAGIVRNVIKNGD 142 Score = 36.1 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 9/83 (10%) Query: 56 VFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADG--SISGVVNAIQVSSTGL-- 111 F+ + + + +N+L A + IGKN+ DG +SGVV + + G+ Sbjct: 157 EFAMEDVLNITDDINENSKYNNDLLNAVNLIGKNVLMDDGKEKLSGVVKGVVRNGLGVSI 216 Query: 112 -TAITVDNTE----IPITTGIRI 129 IT D E +P + Sbjct: 217 KVTITKDGKEQDVYVPFEYVTNV 239 >gi|77464914|ref|YP_354418.1| flagellar basal body rod modification protein [Rhodobacter sphaeroides 2.4.1] gi|77389332|gb|ABA80517.1| Possible FlgD protein [Rhodobacter sphaeroides 2.4.1] Length = 222 Score = 81.5 bits (200), Expect = 3e-14, Method: Composition-based stats. Identities = 26/98 (26%), Positives = 50/98 (51%), Gaps = 9/98 (9%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQ------DAFLKLLITQIKHQDPTEPMKASEQVAQL 54 M + ++S+ + + + + FL++L TQ+++QDP PM++ + QL Sbjct: 1 MNVTGTETSAGSSTTRSRGEASADKAVTSDYETFLRMLTTQLQNQDPMNPMESDDFAMQL 60 Query: 55 AVFSQMEQSVQMNSTLQELLKS---NNLAQASSYIGKN 89 A FS +EQ V+ N L + S L++ + +IG+ Sbjct: 61 ATFSGVEQQVKTNEILTGMGASIGVMGLSELAGWIGRE 98 >gi|167630296|ref|YP_001680795.1| flagellar hook capping protein, putative [Heliobacterium modesticaldum Ice1] gi|167593036|gb|ABZ84784.1| flagellar hook capping protein, putative [Heliobacterium modesticaldum Ice1] Length = 188 Score = 81.5 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 27/68 (39%), Positives = 41/68 (60%) Query: 14 FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73 + KS LG+D FLKLL+TQ+++QDP +PM+ E +AQ+A FS +EQ + ++ Sbjct: 18 TTTKKSNSQLGKDDFLKLLVTQLRYQDPMKPMEDKEFIAQMAQFSSLEQMKNIADGFEKF 77 Query: 74 LKSNNLAQ 81 S A Sbjct: 78 QSSQQKAM 85 >gi|157371208|ref|YP_001479197.1| flagellar basal body rod modification protein [Serratia proteamaculans 568] gi|157322972|gb|ABV42069.1| flagellar hook capping protein [Serratia proteamaculans 568] Length = 225 Score = 81.5 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 30/93 (32%), Positives = 53/93 (56%), Gaps = 4/93 (4%) Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67 N +K+ + + L ++FL LL+ Q+K+QDPT PM+ +E +QLA + ++ ++N Sbjct: 13 NSVIGANAKNNTSQDLN-NSFLTLLVAQLKNQDPTNPMQNNELTSQLAQINTVQGIEKLN 71 Query: 68 STLQEL---LKSNNLAQASSYIGKNITNADGSI 97 +TL + + SN QAS+ IG + +I Sbjct: 72 TTLGSISGQINSNQSLQASALIGHGVMVPGSNI 104 >gi|319944136|ref|ZP_08018414.1| basal-body rod modification protein FlgD [Lautropia mirabilis ATCC 51599] gi|319742630|gb|EFV95039.1| basal-body rod modification protein FlgD [Lautropia mirabilis ATCC 51599] Length = 256 Score = 81.5 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 5/99 (5%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 ++ NP + +S + T +D FLKLL+ Q+++QDP PM+ +E +QLA S + Sbjct: 42 MDGVANPNVNKNDESTADGT--EDRFLKLLVAQMRNQDPMNPMENAEVTSQLAQISTVRG 99 Query: 63 SVQMNSTLQELLKS---NNLAQASSYIGKNITNADGSIS 98 +N ++ S N + + IGK + Sbjct: 100 IESLNKSMANFTASAAQNTALASVNMIGKKVLAPGERFE 138 >gi|221640835|ref|YP_002527097.1| flagellar basal body rod modification protein [Rhodobacter sphaeroides KD131] gi|332559813|ref|ZP_08414135.1| FlgD2 [Rhodobacter sphaeroides WS8N] gi|221161616|gb|ACM02596.1| Flagellar hook capping protein [Rhodobacter sphaeroides KD131] gi|332277525|gb|EGJ22840.1| FlgD2 [Rhodobacter sphaeroides WS8N] Length = 222 Score = 81.5 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 9/98 (9%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQ------DAFLKLLITQIKHQDPTEPMKASEQVAQL 54 M + ++S+ + + + FL++L TQ+++QDP PM++ + QL Sbjct: 1 MNVTGTETSAGSSTTRSRGDASADKAVTSDYETFLRMLTTQLQNQDPMNPMESDDFAMQL 60 Query: 55 AVFSQMEQSVQMNSTLQELLKS---NNLAQASSYIGKN 89 A FS +EQ V+ N L + S L++ + +IG+ Sbjct: 61 ATFSGVEQQVKTNEILTGMGASIGVMGLSELAGWIGRE 98 >gi|28211325|ref|NP_782269.1| putative basal-body rod modification protein flgD [Clostridium tetani E88] gi|28203765|gb|AAO36206.1| putative basal-body rod modification protein flgD [Clostridium tetani E88] Length = 174 Score = 81.5 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 12/109 (11%) Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67 N T + + + L ++AFL++L ++ HQDP +E V Q+A F+ +EQ +N Sbjct: 17 NYTDRGTKIVRPGEELDKNAFLRILAAELSHQDPLSAKDGTEFVTQMAQFTSIEQMSNLN 76 Query: 68 STLQELLKSNNLAQASSYIGKN--ITNAD---GSISGVVNAIQVSSTGL 111 +T++ A A+S IGK + N D GV+ + + Sbjct: 77 NTMR-------FAGATSLIGKYAMVNNTDTYGNLYHGVITGVSRDKGSI 118 >gi|332669197|ref|YP_004452205.1| flagellar hook capping protein [Cellulomonas fimi ATCC 484] gi|332338235|gb|AEE44818.1| flagellar hook capping protein [Cellulomonas fimi ATCC 484] Length = 151 Score = 81.5 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 31/128 (24%), Positives = 59/128 (46%), Gaps = 4/128 (3%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 + T K L + AFL LL+ Q+++QDP+ PM +S+ + Q S ME V Sbjct: 9 GATSRTTDASGTKVPTKELDKQAFLDLLVAQLRNQDPSAPMDSSQLMTQTTQLSTMESLV 68 Query: 65 QMNSTLQELLKSNNLAQASSYIGKNITNAD---GSISGVVNAIQVSSTGLTAITVDNTEI 121 + T +E A+ +G+ +T D + GVV A+ + + + + + +T++ Sbjct: 69 ALADTQRESFALQMRMAAAQLVGQQVTWTDAAGATQKGVVTAVSYAGS-VPTVKIGDTDV 127 Query: 122 PITTGIRI 129 + + Sbjct: 128 TLDAVSSV 135 >gi|121997320|ref|YP_001002107.1| flagellar hook capping protein [Halorhodospira halophila SL1] gi|121588725|gb|ABM61305.1| flagellar hook capping protein [Halorhodospira halophila SL1] Length = 293 Score = 81.1 bits (199), Expect = 4e-14, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 45/85 (52%), Gaps = 3/85 (3%) Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72 E +++G + FL+L++ Q+++QDPT+P + + Q+A F+ Q+ S +E Sbjct: 87 EDKDEGDPQSIGHEDFLELMMVQLQNQDPTDPQDTEQMMGQIAQFTTASGIEQLQSDFRE 146 Query: 73 L---LKSNNLAQASSYIGKNITNAD 94 ++S+ +AS +G+ + Sbjct: 147 FFEHMRSDQSLRASQLVGREVVTES 171 >gi|329898290|ref|ZP_08272373.1| Flagellar basal-body rod modification protein FlgD [gamma proteobacterium IMCC3088] gi|328920855|gb|EGG28298.1| Flagellar basal-body rod modification protein FlgD [gamma proteobacterium IMCC3088] Length = 228 Score = 81.1 bits (199), Expect = 4e-14, Method: Composition-based stats. Identities = 31/83 (37%), Positives = 49/83 (59%), Gaps = 3/83 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 Q+ + + L +DAFL+L Q+K Q+P +PMK VAQLA FS +E M ++L Sbjct: 18 QRNAVYNNGEDDLDRDAFLQLFTAQLKSQNPLDPMKNEAFVAQLAQFSSVEGIKGMQASL 77 Query: 71 QEL---LKSNNLAQASSYIGKNI 90 + L L++++L SS +GK + Sbjct: 78 ETLVSNLRTDSLLTGSSLVGKKV 100 >gi|270262402|ref|ZP_06190673.1| flagellar basal body rod modification protein [Serratia odorifera 4Rx13] gi|270043086|gb|EFA16179.1| flagellar basal body rod modification protein [Serratia odorifera 4Rx13] Length = 225 Score = 81.1 bits (199), Expect = 4e-14, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 3/97 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 N ++ T + + Q+ FL LL+ Q+K+QDPT PM+ +E QLA + ++ Sbjct: 8 NESLDNTVTGVNAKSNTGQDLQNNFLTLLVAQLKNQDPTNPMQNNELTTQLAQINTVQGI 67 Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 ++N+TL + + SN QA++ IG + +I Sbjct: 68 EKLNTTLGSISGQINSNQSLQATALIGHGVMVPGSNI 104 >gi|109899403|ref|YP_662658.1| flagellar basal body rod modification protein [Pseudoalteromonas atlantica T6c] gi|109701684|gb|ABG41604.1| flagellar hook capping protein [Pseudoalteromonas atlantica T6c] Length = 228 Score = 81.1 bits (199), Expect = 4e-14, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 9/119 (7%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL-- 73 +S + L Q+ F LL Q+ +QDP++P+ + VAQ+ F+ + Q+N + Sbjct: 23 ADESNQNLSQEDFFSLLTEQLANQDPSKPVDNDQMVAQMTSFTMADGISQLNEKFETFAT 82 Query: 74 -LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 + SN QASS IG+ + + G V + G++ + ++++ + T I I N Sbjct: 83 SMTSNQALQASSLIGQQVL-----LQGDVAHMASEGQGVSGVVINDST-TLNTKITIEN 135 >gi|146281770|ref|YP_001171923.1| basal-body rod modification protein FlgD [Pseudomonas stutzeri A1501] gi|145569975|gb|ABP79081.1| basal-body rod modification protein FlgD [Pseudomonas stutzeri A1501] Length = 226 Score = 81.1 bits (199), Expect = 4e-14, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 13/120 (10%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNL 79 LG+ F+ LL+TQ+ +Q+P +P SE VAQLA FS +E +N+++ LL +S+ Sbjct: 29 LGKTDFMMLLVTQLNNQNPLDPQDNSEFVAQLAQFSSLESMENLNASMTSLLSTYQSSQA 88 Query: 80 AQASSYIGKNITNADG--------SISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 QA+S +G ++ G S+SG V + SS + + ++ + I + + Sbjct: 89 LQATSLVGSSVIVETGSALVDTSESLSGTV--VMPSSGSNVNVKIYDSTGSLVKTISLGD 146 >gi|238755325|ref|ZP_04616668.1| Flagellar hook capping protein [Yersinia ruckeri ATCC 29473] gi|238706461|gb|EEP98835.1| Flagellar hook capping protein [Yersinia ruckeri ATCC 29473] Length = 229 Score = 81.1 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 3/97 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 NT ++ Q++FL LL+ Q+K+QDPT P++ +E +QLA S ++ Sbjct: 11 NTSAKLETKQTLGGAGSSEEMQNSFLTLLVAQLKNQDPTNPLQNNELTSQLAQISTVQGI 70 Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 ++N+TL + + SN QAS+ +G + SI Sbjct: 71 EKLNTTLGSISGQIDSNQSLQASALLGHGVMVPGNSI 107 >gi|257095360|ref|YP_003169001.1| flagellar hook capping protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047884|gb|ACV37072.1| flagellar hook capping protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 225 Score = 81.1 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 32/104 (30%), Positives = 54/104 (51%), Gaps = 10/104 (9%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 ++ S + S Q+ FLKLL+TQ+K+QDP P+ + +Q++ S + ++N+ Sbjct: 18 NSKSGASDAMSTSEEVQNRFLKLLVTQLKNQDPLNPLDNAAVTSQISQISTVTGIEKLNT 77 Query: 69 TLQELLKS---NNLAQASSYIGKNITNA-------DGSISGVVN 102 TL+ LL + QA+ +GK++ A G SG VN Sbjct: 78 TLETLLNTFNDGQSMQAAGLLGKSVLVAGSQLALTGGRASGGVN 121 >gi|212709491|ref|ZP_03317619.1| hypothetical protein PROVALCAL_00533 [Providencia alcalifaciens DSM 30120] gi|212687829|gb|EEB47357.1| hypothetical protein PROVALCAL_00533 [Providencia alcalifaciens DSM 30120] Length = 288 Score = 81.1 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 51/98 (52%), Gaps = 4/98 (4%) Query: 4 NTEVNPTQQEFSKSKSKKTLG-QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 N+ P + K ++ +D FLK+++TQ+++QDPT+PM ++ QLA + +E Sbjct: 13 NSVAGPAAAASNVPKKSQSDDMRDTFLKMIVTQMQNQDPTKPMDNADLTGQLAQIATLES 72 Query: 63 SVQMNSTLQELLK---SNNLAQASSYIGKNITNADGSI 97 +++ ++ + + S QA+ +GK + I Sbjct: 73 MNKLSDSVTGISQQIGSGQSLQATQLVGKGVLIPRNEI 110 >gi|304321137|ref|YP_003854780.1| putative FlgD protein [Parvularcula bermudensis HTCC2503] gi|303300039|gb|ADM09638.1| putative FlgD protein [Parvularcula bermudensis HTCC2503] Length = 202 Score = 81.1 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 38/114 (33%), Positives = 62/114 (54%), Gaps = 5/114 (4%) Query: 1 MEINTEVNPTQQEFSKSKSKKTL--GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58 MEI+ + + K+ ++L DAFL LL Q+K+QDP P+ +++ V QLA FS Sbjct: 1 MEISPTSAQSAASAANQKATQSLATDLDAFLNLLTAQMKNQDPFAPIDSTQFVEQLATFS 60 Query: 59 QMEQSVQMNSTLQELL---KSNNLAQASSYIGKNITNADGSISGVVNAIQVSST 109 +EQ VQ N L+ ++ +S Q + IG I ++ +ISG + + + S Sbjct: 61 SLEQQVQTNKYLETMMGLLQSTLGGQQTDVIGAQIGASEITISGAFDPLPIVSG 114 >gi|113969605|ref|YP_733398.1| flagellar basal body rod modification protein [Shewanella sp. MR-4] gi|113884289|gb|ABI38341.1| flagellar hook capping protein [Shewanella sp. MR-4] Length = 256 Score = 81.1 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 57/132 (43%), Gaps = 12/132 (9%) Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS--- 68 + L Q+ F LL Q+ QDP +P+ + +AQ+A FS ++ ++N Sbjct: 46 NSVVPEAKSQQLTQEDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGISKLNDEIV 105 Query: 69 TLQELLKSNNLAQASSYIGK---------NITNADGSISGVVNAIQVSSTGLTAITVDNT 119 L ++ S+ QAS +G+ N++ ++SGVV+ + D Sbjct: 106 NLNSVMTSSQALQASGLVGRKVLIPTDTGNVSVESPTLSGVVSTPDKIPVINVRVLDDKG 165 Query: 120 EIPITTGIRISN 131 ++ T I S+ Sbjct: 166 QVVSTFNIDGSD 177 >gi|308050373|ref|YP_003913939.1| flagellar hook capping protein [Ferrimonas balearica DSM 9799] gi|307632563|gb|ADN76865.1| flagellar hook capping protein [Ferrimonas balearica DSM 9799] Length = 228 Score = 81.1 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 58/123 (47%), Gaps = 12/123 (9%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS-- 68 + +S + + L Q+ F LL Q+ QDP +P+ + ++Q++ F+ ++ +N Sbjct: 17 ESAVPESNANQALTQEDFFSLLSQQLSMQDPMKPVDNDQMISQMSSFATVDGINNLNDEI 76 Query: 69 -TLQELLKSNNLAQASSYIGKNIT---------NADGSISGVVNAIQVSSTGLTAITVDN 118 TL ++ SN QAS +G+ + +A ++GVV+A + + + Sbjct: 77 QTLNSVMTSNQALQASGLVGQKVLIPSNVGHLGDAGTPVTGVVSAPTGTQNLMVRVEDST 136 Query: 119 TEI 121 ++ Sbjct: 137 GQV 139 >gi|170288060|ref|YP_001738298.1| flagellar hook capping protein [Thermotoga sp. RQ2] gi|281411900|ref|YP_003345979.1| flagellar hook capping protein [Thermotoga naphthophila RKU-10] gi|170175563|gb|ACB08615.1| flagellar hook capping protein [Thermotoga sp. RQ2] gi|281373003|gb|ADA66565.1| flagellar hook capping protein [Thermotoga naphthophila RKU-10] Length = 224 Score = 81.1 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 58/100 (58%), Gaps = 6/100 (6%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN---NL 79 L ++AFL+LL+ +++ QDP EPM+ + ++QL+ + +EQ + S +++ +++ N Sbjct: 27 LDKEAFLRLLLQELEMQDPLEPMETKDMISQLSQLTSLEQITNLTSAVKDFVEAQTSVNP 86 Query: 80 AQASSYIGKNITNADGSIS---GVVNAIQVSSTGLTAITV 116 AQ +S IGK + + +++ G ++I + + V Sbjct: 87 AQLASLIGKYVVVKNNTVNLVDGQSDSIIFNVDEDAHVVV 126 >gi|126460783|ref|YP_001041897.1| flagellar basal body rod modification protein [Rhodobacter sphaeroides ATCC 17029] gi|126102447|gb|ABN75125.1| flagellar hook capping protein [Rhodobacter sphaeroides ATCC 17029] Length = 222 Score = 81.1 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 9/98 (9%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQ------DAFLKLLITQIKHQDPTEPMKASEQVAQL 54 M + ++S+ + + + FL++L TQ+++QDP PM++ + QL Sbjct: 1 MNVTGTETSAGSSTTRSRGDASADKAVTSDYETFLRMLTTQLQNQDPMNPMESDDFAMQL 60 Query: 55 AVFSQMEQSVQMNSTLQELLKS---NNLAQASSYIGKN 89 A FS +EQ V+ N L + S L++ + +IG+ Sbjct: 61 ATFSGVEQQVKTNEILTGMGASIGVMGLSELAGWIGRE 98 >gi|226225730|ref|YP_002759836.1| putative flagellar basal-body rod modification protein FlgD [Gemmatimonas aurantiaca T-27] gi|226088921|dbj|BAH37366.1| putative flagellar basal-body rod modification protein FlgD [Gemmatimonas aurantiaca T-27] Length = 267 Score = 81.1 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 37/62 (59%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 + +G+D FLK+L+ Q+K+QDP PM + AQLA FS +EQ ++MN +L + Sbjct: 44 PTNPNGMGRDEFLKMLVAQLKNQDPLNPMDGKDMAAQLAQFSTVEQLLKMNESLDAQKSA 103 Query: 77 NN 78 Sbjct: 104 TA 105 >gi|153941387|ref|YP_001391957.1| flagellar hook capping protein [Clostridium botulinum F str. Langeland] gi|152937283|gb|ABS42781.1| flagellar hook capping protein [Clostridium botulinum F str. Langeland] gi|295319976|gb|ADG00354.1| flagellar hook capping protein [Clostridium botulinum F str. 230613] Length = 273 Score = 81.1 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 12/97 (12%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77 K + L ++AF K+L ++ +QDPT +E V+QLA FS +EQ +NS ++ Sbjct: 56 KKGQDLDKNAFFKILAAELANQDPTNAKDGTEYVSQLAQFSSLEQMANLNSMMK------ 109 Query: 78 NLAQASSYIGKNIT-----NADGSISGVVNAIQVSST 109 L AS++IGK + +G+V + + Sbjct: 110 -LTGASNFIGKVVLLRRFDEQGNQYAGIVRNVIKNGD 145 Score = 36.4 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 9/83 (10%) Query: 56 VFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADG--SISGVVNAIQVSSTGL-- 111 F+ + + + +N+L A S IGKN+ DG +SGVV + + G+ Sbjct: 160 EFAMEDVLNITDDINENSKYNNDLLNAVSLIGKNVLMDDGKEKLSGVVKGVVRNGLGVSI 219 Query: 112 -TAITVDNTE----IPITTGIRI 129 IT D E +P + Sbjct: 220 RVTITKDGKEQDIYVPFEYVTNV 242 >gi|226950069|ref|YP_002805160.1| flagellar hook capping protein [Clostridium botulinum A2 str. Kyoto] gi|226843577|gb|ACO86243.1| flagellar hook capping protein [Clostridium botulinum A2 str. Kyoto] Length = 273 Score = 81.1 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 12/97 (12%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77 K + L ++AF K+L ++ +QDPT +E V+QLA FS +EQ +NS ++ Sbjct: 56 KKGQDLDKNAFFKILAAELANQDPTNAKDGTEYVSQLAQFSSLEQMANLNSMMK------ 109 Query: 78 NLAQASSYIGKNIT-----NADGSISGVVNAIQVSST 109 L AS++IGK + +G+V + + Sbjct: 110 -LTGASNFIGKVVLLRRFDEQGNQYAGIVRNVIKNGD 145 Score = 34.1 bits (77), Expect = 6.6, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 5/69 (7%) Query: 56 VFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADG--SISGVVNAIQVSSTGL-- 111 F+ + + + +N+L A + IGKN+ DG +SGVV + + G+ Sbjct: 160 EFAMEDVLNITDDINENSKYNNDLLNAVNLIGKNVLMDDGKEKLSGVVKGVVRNGLGVSI 219 Query: 112 -TAITVDNT 119 IT D Sbjct: 220 KVTITKDGK 228 >gi|332161321|ref|YP_004297898.1| flagellar basal body rod modification protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318605241|emb|CBY26739.1| flagellar basal-body rod modification protein FlgD [Yersinia enterocolitica subsp. palearctica Y11] gi|325665551|gb|ADZ42195.1| flagellar basal body rod modification protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330860607|emb|CBX70904.1| basal-body rod modification protein flgD [Yersinia enterocolitica W22703] Length = 228 Score = 81.1 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 59/117 (50%), Gaps = 14/117 (11%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q++FL LL+ Q+K+QDPT PM+ +E QLA + + ++N+TL + + ++ Q Sbjct: 32 QNSFLTLLVAQLKNQDPTNPMQNNELTTQLAQINTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNITNAD-----GSISGVVNAIQV------SSTGLTAITVDNTEIPITTGI 127 ASS IG+ + GS GVV ++ +TA D+ + + T Sbjct: 92 ASSLIGRGVMVPGTNVLAGSKDGVVTTTPFGVELERAADKVTATITDSNGVAVRTIE 148 >gi|294013085|ref|YP_003546545.1| flagellar basal-body rod modification protein FlgD [Sphingobium japonicum UT26S] gi|292676415|dbj|BAI97933.1| flagellar basal-body rod modification protein FlgD [Sphingobium japonicum UT26S] Length = 218 Score = 81.1 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 11/115 (9%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---L 74 K +GQ FL+LL Q++ QDP EP+ ++ VAQ+A + +MN TL+ L L Sbjct: 23 TGKSEMGQADFLRLLTAQMQTQDPFEPVDNAQMVAQMATITNSSGIAEMNQTLKNLASEL 82 Query: 75 KSNNLAQASSYIGKNIT--------NADGSISGVVNAIQVSSTGLTAITVDNTEI 121 + L A+S+IGK++ +A G G V+ +S + N + Sbjct: 83 TGSRLGDAASWIGKSMLVQSNIAAPDAAGQYMGQVSFADATSGASVDLIDGNGNV 137 >gi|307546969|ref|YP_003899448.1| flagellar basal body rod modification protein [Halomonas elongata DSM 2581] gi|307218993|emb|CBV44263.1| flagellar basal body rod modification protein [Halomonas elongata DSM 2581] Length = 230 Score = 81.1 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 10/134 (7%) Query: 3 INTEVNPTQQEFSKSK---SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59 I+T V T + + + ++ F+ LL+TQ+++QDP PM + +QLA + Sbjct: 5 IDTGVTSTLNGGGSAGLNAGQSSALRENFMTLLVTQLQNQDPLNPMDNHQTTSQLAQINT 64 Query: 60 MEQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI---SGVVNAIQVSSTGLTA 113 + ++N +L E+ + + QAS IGK + + G + + G+ Sbjct: 65 VSGIEKLNDSLSEINGQIDAGQSLQASGLIGKGVLVPGNRVLLSQGEDGEVTTTPFGVEL 124 Query: 114 IT-VDNTEIPITTG 126 DN + IT G Sbjct: 125 QRPADNVTVTITNG 138 >gi|170754574|ref|YP_001782273.1| flagellar hook capping protein [Clostridium botulinum B1 str. Okra] gi|169119786|gb|ACA43622.1| flagellar hook capping protein [Clostridium botulinum B1 str. Okra] Length = 273 Score = 81.1 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 12/97 (12%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77 K + L ++AF K+L ++ +QDPT +E V+QLA FS +EQ +NS ++ Sbjct: 56 KKGQDLDKNAFFKILAAELANQDPTNAKDGTEYVSQLAQFSSLEQMANLNSMMK------ 109 Query: 78 NLAQASSYIGKNIT-----NADGSISGVVNAIQVSST 109 L AS++IGK + +G+V + + Sbjct: 110 -LTGASNFIGKVVLLRRFDEQGNQYAGIVRNVIKNGD 145 Score = 35.7 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 9/83 (10%) Query: 56 VFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADG--SISGVVNAIQVSSTGL-- 111 F+ + + + +N+L A S IGKN+ DG +SGVV + + G+ Sbjct: 160 EFAMEDVLNITDDINENSKYNNDLLNAVSLIGKNVLMDDGKEKLSGVVKGVVRNGLGVSI 219 Query: 112 -TAITVDNTE----IPITTGIRI 129 IT D + +P + Sbjct: 220 RVTITKDGKDQDIYVPFEYVTNV 242 >gi|311992299|gb|ADQ26723.1| hook capping protein [Aeromonas hydrophila] Length = 241 Score = 80.7 bits (198), Expect = 5e-14, Method: Composition-based stats. Identities = 32/113 (28%), Positives = 59/113 (52%), Gaps = 11/113 (9%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS---TLQELLK 75 KK L Q++FLKLL Q+ +QDP +P+ ++ ++Q+ S + +++ +L L+ Sbjct: 24 PKKELDQESFLKLLTMQLSYQDPFKPVDNAQMLSQMTSMSTSQGISSLSNQIGSLNSLMT 83 Query: 76 SNNLAQASSYIGKNI--------TNADGSISGVVNAIQVSSTGLTAITVDNTE 120 S+ QAS+ +G+N+ DGS+ GVV + IT+++ Sbjct: 84 SSQALQASALVGQNVLLQSNVGYLEKDGSLQGVVAVGTENKYSNVKITIEDES 136 >gi|285018210|ref|YP_003375921.1| flagellar hook capping protein flgd [Xanthomonas albilineans GPE PC73] gi|283473428|emb|CBA15933.1| probable flagellar hook capping protein flgd [Xanthomonas albilineans] Length = 226 Score = 80.7 bits (198), Expect = 5e-14, Method: Composition-based stats. Identities = 32/108 (29%), Positives = 58/108 (53%), Gaps = 14/108 (12%) Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNN 78 L Q FLKL+ Q++HQDP +PM S+ V+Q+A S ++ +N T+ L + ++ Sbjct: 31 ALKQADFLKLMTEQLQHQDPLKPMDNSQMVSQMAQLSTVQGIGDLNKTVTALSASMSTDQ 90 Query: 79 LAQASSYIGKNI--------TNADGSISGVVNAIQVSSTGLTAITVDN 118 + + ++ IG + +DG+ G+V A +S G+ +TV + Sbjct: 91 VLRGANLIGHKVLVPSASLPLGSDGAAGGMVAA---TSAGVVNLTVSD 135 >gi|15643438|ref|NP_228482.1| basal-body rod modification protein FlgD [Thermotoga maritima MSB8] gi|4981197|gb|AAD35757.1|AE001740_3 basal-body rod modification protein FlgD [Thermotoga maritima MSB8] Length = 224 Score = 80.7 bits (198), Expect = 5e-14, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 57/100 (57%), Gaps = 6/100 (6%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL--- 79 L ++AFL+LL+ +++ QDP EPM+ + ++QL+ + +EQ + S +++ +++ Sbjct: 27 LDKEAFLRLLLQELEMQDPLEPMETKDMISQLSQLTSLEQITNLTSAVKDFVEAQTSVSP 86 Query: 80 AQASSYIGKNITNADGSIS---GVVNAIQVSSTGLTAITV 116 AQ +S IGK + + +++ G ++I + + V Sbjct: 87 AQLASLIGKYVVVRNNTVNLVGGQSDSIIFNVDEDAHVVV 126 >gi|91776308|ref|YP_546064.1| flagellar hook capping protein [Methylobacillus flagellatus KT] gi|91710295|gb|ABE50223.1| flagellar hook capping protein [Methylobacillus flagellatus KT] Length = 228 Score = 80.7 bits (198), Expect = 5e-14, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 3/87 (3%) Query: 14 FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73 + + S + QD F+KLLI Q+K+QDP PM +E +Q+A S + +MN++L Sbjct: 20 ANNNTSAISETQDRFMKLLIAQMKNQDPLNPMDNAEVTSQMAQLSTVTGIEKMNASLSTF 79 Query: 74 ---LKSNNLAQASSYIGKNITNADGSI 97 +++ QASS IG + S Sbjct: 80 ISSMQATQALQASSLIGNTVLVEGNST 106 >gi|313497760|gb|ADR59126.1| FlgD [Pseudomonas putida BIRD-1] Length = 233 Score = 80.7 bits (198), Expect = 5e-14, Method: Composition-based stats. Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 3/85 (3%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 ++ + S + LG+DAFL+LL+TQ+++Q+P +P + E VAQLA FS +E +N Sbjct: 22 TSKTDSSTGAAGSALGKDAFLQLLVTQMQNQNPLDPQENGEFVAQLAQFSSLESMQSLND 81 Query: 69 TLQEL---LKSNNLAQASSYIGKNI 90 + + L+S+ QASS +G+N+ Sbjct: 82 AVTYIAAGLQSSQALQASSLVGRNV 106 >gi|148269403|ref|YP_001243863.1| flagellar hook capping protein [Thermotoga petrophila RKU-1] gi|147734947|gb|ABQ46287.1| flagellar hook capping protein [Thermotoga petrophila RKU-1] Length = 224 Score = 80.7 bits (198), Expect = 6e-14, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 58/100 (58%), Gaps = 6/100 (6%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN---NL 79 L ++AFL+LL+ +++ QDP EPM+ + ++QL+ + +EQ + S +++ +++ N Sbjct: 27 LDKEAFLRLLLQELEMQDPLEPMETKDMISQLSQLASLEQITNLTSAVKDFVEAQTSVNP 86 Query: 80 AQASSYIGKNITNADGSIS---GVVNAIQVSSTGLTAITV 116 AQ +S IGK + + +++ G ++I + + V Sbjct: 87 AQLASLIGKYVVVKNNTVNLVDGQSDSIIFNVDEDAHVVV 126 >gi|289433974|ref|YP_003463846.1| flagellar hook assembly protein FlgD [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170218|emb|CBH26758.1| flagellar hook assembly protein FlgD [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 140 Score = 80.7 bits (198), Expect = 6e-14, Method: Composition-based stats. Identities = 37/132 (28%), Positives = 71/132 (53%), Gaps = 7/132 (5%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 + S KTLG+D F+KL +T +++QDP+ P+ +E ++Q+A S MEQ Sbjct: 8 SGATQDTNNAVTSSVSKTLGKDDFMKLFLTSLQYQDPSSPLDTNEMMSQMAQLSLMEQVA 67 Query: 65 QMNSTLQEL---LKSNNLAQASSYIGKN---ITNADGSISGVVNAIQVSSTGLTA-ITVD 117 M + + +L +++ L A ++IGK+ ++ ISG V ++Q ++ G+ + Sbjct: 68 NMTTAVDKLSEQAQNSALQSAVNFIGKDIKGVSLNGEVISGQVESVQQTTNGVMLKLKEQ 127 Query: 118 NTEIPITTGIRI 129 ++ +P+T I Sbjct: 128 DSLVPLTYVTEI 139 >gi|253998489|ref|YP_003050552.1| flagellar hook capping protein [Methylovorus sp. SIP3-4] gi|253985168|gb|ACT50025.1| flagellar hook capping protein [Methylovorus sp. SIP3-4] Length = 218 Score = 80.7 bits (198), Expect = 6e-14, Method: Composition-based stats. Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 3/98 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 N + S S S QD F+ LLITQ+K QDP PM ++ +QLA S + Sbjct: 6 NDLLTTMNTRKSGSGSTAADAQDRFMTLLITQMKSQDPLNPMDNAQVTSQLAQLSTVTGI 65 Query: 64 VQMNSTLQELL---KSNNLAQASSYIGKNITNADGSIS 98 ++NST++ ++ +S+ QAS+ IG+ + S++ Sbjct: 66 DKLNSTMESMISNVQSSQTYQASNMIGRYVLTKGDSLT 103 >gi|187778754|ref|ZP_02995227.1| hypothetical protein CLOSPO_02349 [Clostridium sporogenes ATCC 15579] gi|187772379|gb|EDU36181.1| hypothetical protein CLOSPO_02349 [Clostridium sporogenes ATCC 15579] Length = 279 Score = 80.7 bits (198), Expect = 6e-14, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 12/97 (12%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77 K + L ++AF K+L ++ +QDPT +E V+QLA FS +EQ +NS ++ Sbjct: 53 KKGQDLDKNAFFKILAAELANQDPTNAKDGTEYVSQLAQFSSLEQMANLNSMMK------ 106 Query: 78 NLAQASSYIGKNIT-----NADGSISGVVNAIQVSST 109 L AS++IGK + +G+V + + Sbjct: 107 -LTGASNFIGKVVLLRRFDEQGNQYAGIVRNVIKNGD 142 Score = 37.2 bits (85), Expect = 0.76, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 9/83 (10%) Query: 56 VFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADG--SISGVVNAIQVSSTGL-- 111 F+ + + + +N+L A S IGKN+ DG I+GVV + + G+ Sbjct: 157 EFAMEDVLNITDDINENSKYNNDLLNAVSLIGKNVLMDDGKEKITGVVKGVVRNGLGVSI 216 Query: 112 -TAITVDNTE----IPITTGIRI 129 IT D E +P + Sbjct: 217 KVTITKDGKEQDIYVPFEYVTNV 239 >gi|325274801|ref|ZP_08140829.1| flagellar basal body rod modification protein [Pseudomonas sp. TJI-51] gi|324100069|gb|EGB97887.1| flagellar basal body rod modification protein [Pseudomonas sp. TJI-51] Length = 233 Score = 80.7 bits (198), Expect = 6e-14, Method: Composition-based stats. Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 3/85 (3%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 ++ + S + LG+DAFL+LL+TQ+++Q+P +P + E VAQLA FS +E +N Sbjct: 22 TSKTDSSTGAAGSALGKDAFLQLLVTQMQNQNPLDPQENGEFVAQLAQFSSLESMQSLND 81 Query: 69 TLQEL---LKSNNLAQASSYIGKNI 90 + + L+S+ QASS +G+N+ Sbjct: 82 AVTYIAAGLQSSQALQASSLVGRNV 106 >gi|332305614|ref|YP_004433465.1| flagellar hook capping protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172943|gb|AEE22197.1| flagellar hook capping protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 228 Score = 80.7 bits (198), Expect = 6e-14, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 9/119 (7%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL-- 73 S + L Q+ F LL Q+ +QDP++P+ + VAQ+ F+ + Q+N + Sbjct: 23 ADDSNQNLSQEDFFSLLTEQLANQDPSKPVDNDQMVAQMTSFTMADGISQLNEKFETFAT 82 Query: 74 -LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 + SN QASS IG+ + + G V + G++ + +++T + T I I N Sbjct: 83 SMTSNQALQASSLIGQQVL-----LQGDVAHMASEGQGVSGVVINDTT-TLNTKITIEN 135 >gi|89902476|ref|YP_524947.1| flagellar hook capping protein [Rhodoferax ferrireducens T118] gi|89347213|gb|ABD71416.1| flagellar hook capping protein [Rhodoferax ferrireducens T118] Length = 223 Score = 80.7 bits (198), Expect = 6e-14, Method: Composition-based stats. Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 3/77 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 QD FLKLL+ Q+ +QDP PM ++ +Q+A + + Q+N TL+ + S + Q Sbjct: 36 QDRFLKLLVAQLNNQDPMNPMDNAQMTSQMAQINTVTGIQQVNETLKSMAAQFTSLQVLQ 95 Query: 82 ASSYIGKNITNADGSIS 98 +S +G N+ +++ Sbjct: 96 GASMVGHNVLVESNTLT 112 >gi|315301939|ref|ZP_07872941.1| flagellar hook capping protein [Listeria ivanovii FSL F6-596] gi|313629692|gb|EFR97823.1| flagellar hook capping protein [Listeria ivanovii FSL F6-596] gi|313634373|gb|EFS00968.1| flagellar hook capping protein [Listeria seeligeri FSL N1-067] gi|313639058|gb|EFS04045.1| flagellar hook capping protein [Listeria seeligeri FSL S4-171] Length = 140 Score = 80.7 bits (198), Expect = 6e-14, Method: Composition-based stats. Identities = 37/132 (28%), Positives = 71/132 (53%), Gaps = 7/132 (5%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 + S KTLG+D F+KL +T +++QDP+ P+ +E ++Q+A S MEQ Sbjct: 8 SGATQDTNNAVTSSVSKTLGKDDFMKLFLTSLQYQDPSSPLDTNEMMSQMAQLSLMEQVA 67 Query: 65 QMNSTLQEL---LKSNNLAQASSYIGKN---ITNADGSISGVVNAIQVSSTGLTA-ITVD 117 M + + +L +++ L A ++IGK+ ++ ISG V ++Q ++ G+ + Sbjct: 68 NMTTAVDKLSEQAQNSALQSAVNFIGKDIKGVSLNGEVISGQVESVQQTTNGVMLKLKEQ 127 Query: 118 NTEIPITTGIRI 129 ++ +P+T I Sbjct: 128 DSLVPLTYVTEI 139 >gi|309779446|ref|ZP_07674207.1| basal-body rod modification protein FlgD [Ralstonia sp. 5_7_47FAA] gi|308921687|gb|EFP67323.1| basal-body rod modification protein FlgD [Ralstonia sp. 5_7_47FAA] Length = 218 Score = 80.7 bits (198), Expect = 6e-14, Method: Composition-based stats. Identities = 27/80 (33%), Positives = 49/80 (61%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78 +K + Q+ F++LL+ Q+K+QDP PM S+ +QLA + + Q+N+T+ +L N Sbjct: 24 TKGSDLQNTFMQLLVAQLKNQDPLNPMDNSQMTSQLAQINTVNGIQQLNTTMSSMLTQNA 83 Query: 79 LAQASSYIGKNITNADGSIS 98 QASS IG+++ +++ Sbjct: 84 TTQASSMIGRSVQVPTNNLT 103 >gi|26991078|ref|NP_746503.1| flagellar basal body rod modification protein [Pseudomonas putida KT2440] gi|24986113|gb|AAN69967.1|AE016635_3 flagellar basal-body rod modification protein FlgD [Pseudomonas putida KT2440] Length = 233 Score = 80.7 bits (198), Expect = 7e-14, Method: Composition-based stats. Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 3/85 (3%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 ++ + S + LG+DAFL+LL+TQ+++Q+P +P + E VAQLA FS +E +N Sbjct: 22 TSKTDSSTGAAGSALGKDAFLQLLVTQMQNQNPLDPQENGEFVAQLAQFSSLESMQSLND 81 Query: 69 TLQEL---LKSNNLAQASSYIGKNI 90 + + L+S+ QASS +G+N+ Sbjct: 82 AVTYIAAGLQSSQALQASSLVGRNV 106 >gi|157376217|ref|YP_001474817.1| flagellar basal body rod modification protein [Shewanella sediminis HAW-EB3] gi|157318591|gb|ABV37689.1| flagellar hook capping protein [Shewanella sediminis HAW-EB3] Length = 282 Score = 80.4 bits (197), Expect = 7e-14, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 59/129 (45%), Gaps = 12/129 (9%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS-- 68 ++ + + L Q+ F LL Q+ QDP +P+ + ++Q+A FS ++ +N Sbjct: 59 EESSIPEPNSQELTQEDFFSLLSQQLSMQDPFKPVDNDQMISQMASFSTVDGIKNLNDEI 118 Query: 69 -TLQELLKSNNLAQASSYIGKNI---------TNADGSISGVVNAIQVSSTGLTAITVDN 118 L ++ S+ QAS +G+ + + D SI+G+++ + T + D Sbjct: 119 VNLNSVMTSSQALQASGLVGQKVLIPSDTGYISAEDPSINGIISTPEAIDTITVRVEDDK 178 Query: 119 TEIPITTGI 127 ++ + I Sbjct: 179 GQLVKSFTI 187 >gi|86139469|ref|ZP_01058038.1| basal-body rod modification protein FlgD [Roseobacter sp. MED193] gi|85823972|gb|EAQ44178.1| basal-body rod modification protein FlgD [Roseobacter sp. MED193] Length = 231 Score = 80.4 bits (197), Expect = 7e-14, Method: Composition-based stats. Identities = 34/110 (30%), Positives = 48/110 (43%), Gaps = 5/110 (4%) Query: 5 TEVNPTQQEFSKSKSKKTL--GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 T N + + L D F+KLL Q K+QDPTEPM +E +QLA FS +EQ Sbjct: 8 TNYNTATANSASAGGGTNLTSDFDTFIKLLTAQAKYQDPTEPMDNTEYASQLAEFSMVEQ 67 Query: 63 SVQMNSTLQELLKSNNLAQAS---SYIGKNITNADGSISGVVNAIQVSST 109 V N L L+ L + ++G + A + + VS Sbjct: 68 QVLTNDNLGSALEQLGLGNMAALTGWVGMEVRAATAASFDGTTPVNVSPN 117 >gi|261344143|ref|ZP_05971787.1| basal-body rod modification protein FlgD [Providencia rustigianii DSM 4541] gi|282567735|gb|EFB73270.1| basal-body rod modification protein FlgD [Providencia rustigianii DSM 4541] Length = 285 Score = 80.4 bits (197), Expect = 7e-14, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 58/116 (50%), Gaps = 6/116 (5%) Query: 4 NTEVNPTQQEFSKSKSKKTLG-QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 N+ P + K ++ +D FL +++TQ+++QDPT+PM ++ QLA + +E Sbjct: 13 NSVAGPAAVASNVPKKSQSDDMRDTFLTMIVTQMQNQDPTKPMDNADLTGQLAQIATLES 72 Query: 63 SVQMNSTLQELLK---SNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAIT 115 +++ ++ + + S QA+ +GK + I ++ +++ S G + Sbjct: 73 MNKLSDSVSGISQQIGSGQSLQATQLVGKGVLIPRNEI--ILASLKKESNGENSTV 126 >gi|227356002|ref|ZP_03840394.1| flagellar basal body rod modification protein [Proteus mirabilis ATCC 29906] gi|227163990|gb|EEI48892.1| flagellar basal body rod modification protein [Proteus mirabilis ATCC 29906] Length = 268 Score = 80.4 bits (197), Expect = 7e-14, Method: Composition-based stats. Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 3/98 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 NT + + K + FL LLITQ+++QDPT PM+ +E +QLA S +E Sbjct: 13 NTIIGEAPSSYHTKKGGSDDIKGNFLTLLITQMQNQDPTNPMQNNELTSQLAQISTVEGI 72 Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSIS 98 +N T+ + + + +A+S + + A IS Sbjct: 73 ETLNKTVNTIVGQIDQSQALRATSLVNHMVMIAGNEIS 110 >gi|117619792|ref|YP_857344.1| flagellar hook capping protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561199|gb|ABK38147.1| flagellar hook capping protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 242 Score = 80.4 bits (197), Expect = 7e-14, Method: Composition-based stats. Identities = 32/113 (28%), Positives = 59/113 (52%), Gaps = 11/113 (9%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS---TLQELLK 75 KK L Q++FLKLL Q+ +QDP +P+ ++ ++Q+ S + +++ +L L+ Sbjct: 25 PKKELDQESFLKLLTMQLSYQDPFKPVDNAQMLSQMTSMSTSQGISSLSNQIGSLNSLMT 84 Query: 76 SNNLAQASSYIGKNI--------TNADGSISGVVNAIQVSSTGLTAITVDNTE 120 S+ QAS+ +G+N+ DGS+ GVV + IT+++ Sbjct: 85 SSQALQASALVGQNVLLQSNVGYLEKDGSLPGVVAVGTENKYSNVKITIEDES 137 >gi|85060037|ref|YP_455739.1| putative flagellar hook formation protein FlgD [Sodalis glossinidius str. 'morsitans'] gi|84780557|dbj|BAE75334.1| putative flagellar hook formation protein FlgD [Sodalis glossinidius str. 'morsitans'] Length = 138 Score = 80.4 bits (197), Expect = 7e-14, Method: Composition-based stats. Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 8/93 (8%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS 84 Q+ FL LL+ Q+++QDPT P+ +E QLA S + +N+ L + S+ QA++ Sbjct: 32 QNNFLTLLVAQLRNQDPTNPLDNAELTTQLAQISILSSIENLNTMLGSI--SSQNLQATT 89 Query: 85 YIGKNITNADGSISGVVNAIQVSSTGLTAITVD 117 +G + DGS A+ S G ++ D Sbjct: 90 LVGHGVMV-DGS-----GAVYYSRNGEFSLNAD 116 >gi|71282499|ref|YP_268221.1| basal-body rod modification protein FlgD [Colwellia psychrerythraea 34H] gi|71148239|gb|AAZ28712.1| basal-body rod modification protein FlgD [Colwellia psychrerythraea 34H] Length = 256 Score = 80.4 bits (197), Expect = 7e-14, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 53/114 (46%), Gaps = 4/114 (3%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL-- 73 S+ L Q F LL ++ +QDPT+P+ ++ ++Q+ FS + +N + Sbjct: 49 SDGSEGMLTQSDFFALLTKELANQDPTKPVDNNQMISQMTAFSTTDGVRTLNDSFGSFAG 108 Query: 74 -LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTG 126 + S+ QASS +G+++ D ++ G+ V ++ N +I + Sbjct: 109 SMTSSQALQASSLVGRSVLVED-NVFGMAEGEAVKGKLVSDKPASNVKIYVENV 161 >gi|293395582|ref|ZP_06639865.1| basal-body rod modification protein FlgD [Serratia odorifera DSM 4582] gi|291421901|gb|EFE95147.1| basal-body rod modification protein FlgD [Serratia odorifera DSM 4582] Length = 229 Score = 80.4 bits (197), Expect = 8e-14, Method: Composition-based stats. Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 4/97 (4%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 NT + + L ++FL LL+ Q+K+QDPT PM+ +E +QLA + + Sbjct: 13 NTVAGVNANRSVGGNTSQDL-HNSFLTLLVAQLKNQDPTNPMQNNELTSQLAQINTVSGI 71 Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 ++N+TL + + SN QAS+ IG + I Sbjct: 72 EKLNTTLGAISGQINSNQSLQASALIGHGVMVPGKDI 108 >gi|269138581|ref|YP_003295281.1| flagellar basal body rod modification protein [Edwardsiella tarda EIB202] gi|267984241|gb|ACY84070.1| flagellar basal body rod modification protein [Edwardsiella tarda EIB202] gi|304558591|gb|ADM41255.1| Flagellar basal-body rod modification protein FlgD [Edwardsiella tarda FL6-60] Length = 232 Score = 80.4 bits (197), Expect = 8e-14, Method: Composition-based stats. Identities = 31/100 (31%), Positives = 57/100 (57%), Gaps = 4/100 (4%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 ++ ++ VN + + + + + L Q++FL LL+ Q+++QDPT P++ +E QLA S + Sbjct: 11 VDTSSPVNASSKSGLVADNGQDL-QNSFLTLLVAQLRNQDPTNPLQNNELTTQLAQISTV 69 Query: 61 EQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 ++N+TL + + SN QASS IG + +I Sbjct: 70 SGIEKLNTTLGSISGQINSNQSIQASSLIGHGVMIPGKTI 109 >gi|297183503|gb|ADI19633.1| flagellar hook capping protein [uncultured delta proteobacterium HF0770_45N15] Length = 262 Score = 80.4 bits (197), Expect = 8e-14, Method: Composition-based stats. Identities = 33/111 (29%), Positives = 57/111 (51%), Gaps = 8/111 (7%) Query: 5 TEVNPTQQEFSKSKS--KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 T TQQ + + + LG+ FL LL+TQ+ +QDPT+PMK + + Q+A +EQ Sbjct: 11 TTAKSTQQNMTARGTADNRELGKQDFLNLLMTQLANQDPTDPMKPEQMMQQMASLGTVEQ 70 Query: 63 SVQMNSTLQELLKSN---NLAQASSYIGKNITNADGSI---SGVVNAIQVS 107 +N+ ++++ A ASS +G+++ S+ SGV + Sbjct: 71 LQNLNAQTRQVIGLQKQIARASASSLLGRDVEVGSTSLSVQSGVTQPVSFK 121 >gi|290474971|ref|YP_003467855.1| flagellar initiation of hook assembly [Xenorhabdus bovienii SS-2004] gi|289174288|emb|CBJ81078.1| flagellar biosynthesis; initiation of hook assembly [Xenorhabdus bovienii SS-2004] Length = 231 Score = 80.4 bits (197), Expect = 8e-14, Method: Composition-based stats. Identities = 39/133 (29%), Positives = 59/133 (44%), Gaps = 7/133 (5%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 N+ V + K +D FL LL+ Q+K+QDPT PM+ +E QLA S ++ Sbjct: 13 NSTVGELATLNKQQPQKSGDIKDNFLNLLVAQLKNQDPTNPMQNNELTTQLAQISTVQGV 72 Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI---SGVVNAIQVSSTGLTAIT-V 116 ++N TL + ++ N Q + IG+ + I SG N I S G Sbjct: 73 EKLNKTLGAVVGQMEGNQAMQTTMLIGRTVMIPGDKILVGSGEENGISTSPFGFELTRPA 132 Query: 117 DNTEIPITTGIRI 129 DN +I I + Sbjct: 133 DNIKITIRDKEGV 145 >gi|57169038|ref|ZP_00368166.1| probable flagellar hook assembly protein Cj0042 [Campylobacter coli RM2228] gi|57019583|gb|EAL56273.1| probable flagellar hook assembly protein Cj0042 [Campylobacter coli RM2228] Length = 287 Score = 80.4 bits (197), Expect = 8e-14, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 10/92 (10%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 S TL +DAFLKLL+ +++HQDPT+PM + + + Q + S +E N+T+Q+++++ Sbjct: 40 SNPNATLDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVET 99 Query: 77 NNLA----------QASSYIGKNITNADGSIS 98 L A IGK T +D I Sbjct: 100 MQLLSNSFSTSMSTSAIGAIGKMATVSDNKIK 131 >gi|239817166|ref|YP_002946076.1| flagellar hook capping protein [Variovorax paradoxus S110] gi|239803743|gb|ACS20810.1| flagellar hook capping protein [Variovorax paradoxus S110] Length = 228 Score = 80.4 bits (197), Expect = 9e-14, Method: Composition-based stats. Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 3/97 (3%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 + +N S + FLKLL+TQ+ +QDP PM+ +E +QLA S + Sbjct: 10 SGLNAATAASSAGNVSGADSEQRFLKLLVTQLNNQDPLNPMENAELTSQLAQMSTVSGIE 69 Query: 65 QMNSTLQELLKS---NNLAQASSYIGKNITNADGSIS 98 ++N+ L L+ N + QA+S IG N+ + ++S Sbjct: 70 RLNTALSGLVNQTGANQVLQAASLIGYNVLSPGNALS 106 >gi|57505770|ref|ZP_00371696.1| hook assembly protein, flagella (flgD), putative [Campylobacter upsaliensis RM3195] gi|57016043|gb|EAL52831.1| hook assembly protein, flagella (flgD), putative [Campylobacter upsaliensis RM3195] Length = 274 Score = 80.4 bits (197), Expect = 9e-14, Method: Composition-based stats. Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 11/106 (10%) Query: 4 NTEVNPTQQEFSKSKSKKT-LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 NT N S + L +DAFLKLL+ +++HQDPT+PM + + + Q + + +E Sbjct: 20 NTTQNSGDNLTSNQGNPGAVLDKDAFLKLLLIEMQHQDPTDPMDSDKMLTQTSQLAALEM 79 Query: 63 SVQMNSTLQEL----------LKSNNLAQASSYIGKNITNADGSIS 98 N+T+Q++ + ++ A IGK T AD I Sbjct: 80 QQNTNNTMQQMVAQMKKLSNAMGTSQSIGALGAIGKMATVADNKIK 125 >gi|255323567|ref|ZP_05364697.1| flagellar hook assembly protein [Campylobacter showae RM3277] gi|255299281|gb|EET78568.1| flagellar hook assembly protein [Campylobacter showae RM3277] Length = 234 Score = 80.0 bits (196), Expect = 9e-14, Method: Composition-based stats. Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 6/94 (6%) Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 Q+ + + L +DAF+KLL+T++++QDPT PM + + Q + + +E N +Q Sbjct: 25 QKAAGTNPNAQLDKDAFMKLLLTELQYQDPTSPMDTEKMLTQTSQLASLEMQENTNKMMQ 84 Query: 72 EL---LKSNNLAQASSYIGKNITNADGSISGVVN 102 +L LK++ A +GK D SG+V Sbjct: 85 KLADQLKNSTNMYAVGVLGKMAKIGD---SGIVK 115 >gi|260429426|ref|ZP_05783403.1| flagellar basal body rod modification protein [Citreicella sp. SE45] gi|260420049|gb|EEX13302.1| flagellar basal body rod modification protein [Citreicella sp. SE45] Length = 222 Score = 80.0 bits (196), Expect = 9e-14, Method: Composition-based stats. Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 3/84 (3%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 + S +K+ + + FLK+L TQ+++QDP P+ +E QLA FS +EQ V N Sbjct: 14 SSSNTASTNKTVLSPDFETFLKMLTTQMQNQDPLNPLDTTEYATQLATFSSVEQQVLTND 73 Query: 69 TLQEL---LKSNNLAQASSYIGKN 89 L+EL + N + + +IGK Sbjct: 74 LLKELTGVIGGNQFQELAGWIGKQ 97 >gi|261856361|ref|YP_003263644.1| flagellar hook capping protein [Halothiobacillus neapolitanus c2] gi|261836830|gb|ACX96597.1| flagellar hook capping protein [Halothiobacillus neapolitanus c2] Length = 245 Score = 80.0 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 44/156 (28%), Positives = 77/156 (49%), Gaps = 28/156 (17%) Query: 1 MEINTEVNPTQQEFSKSKSK--KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58 + +++ S + ++L ++F+KLL TQ+++QDPT P S+ +AQLA FS Sbjct: 16 LAVSSATGSGANSTSGTSGNGAESLDMNSFMKLLTTQLQNQDPTNPTDNSQMIAQLAQFS 75 Query: 59 QMEQSVQMNST---LQELLKSNNLAQASSYIGK------------NITNADGSIS----- 98 ++ Q+N+T Q L+S+ + QA++ +GK N T ADG+ Sbjct: 76 SLQGISQLNTTVNGFQSTLQSSQIMQAAALVGKAAIVKGDTAHMYNSTAADGTTKASGIL 135 Query: 99 GVVN------AIQVSSTGLTAITVDNTEIPITTGIR 128 G V+ ++ VS T + VD +P++ R Sbjct: 136 GAVDIPTGATSVSVSITNASGQVVDTQSVPVSGSAR 171 >gi|239995126|ref|ZP_04715650.1| flagellar basal body rod modification protein [Alteromonas macleodii ATCC 27126] gi|332140545|ref|YP_004426283.1| flagellar basal body rod modification protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327550567|gb|AEA97285.1| flagellar basal body rod modification protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 228 Score = 80.0 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 8/109 (7%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL-- 73 +++ L Q+ F +L Q+ +QDPT P+ + VAQ+ F+ + Q+N + Sbjct: 23 ADGTEQQLTQEDFFSMLTEQLANQDPTAPVDNDQMVAQMTSFTMADGISQLNEKFESFAA 82 Query: 74 -LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEI 121 + SN QASS IG+N+ + G V + G++ + V+ + Sbjct: 83 SMTSNQALQASSLIGQNVL-----VQGNVGYMANEGDGISGVIVNEKTV 126 >gi|330830304|ref|YP_004393256.1| flagellar hook capping protein [Aeromonas veronii B565] gi|328805440|gb|AEB50639.1| Flagellar hook capping protein [Aeromonas veronii B565] Length = 246 Score = 80.0 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 11/113 (9%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL---QELLK 75 KK L Q +FLKLL Q+ +QDP +P+ ++ ++Q+ S E +++ + L+ Sbjct: 25 PKKELDQASFLKLLTMQLSYQDPFKPVDNAQMLSQMTSMSTSEGINSLSTQMGNLNTLMT 84 Query: 76 SNNLAQASSYIGKNI--------TNADGSISGVVNAIQVSSTGLTAITVDNTE 120 S+ QAS+ +G+N+ +GSISGVV + ITV++ + Sbjct: 85 SSQALQASALVGQNVLLPSNIGYLEKEGSISGVVAVGVENKYSNVKITVEDEK 137 >gi|253702501|ref|YP_003023690.1| flagellar hook capping protein [Geobacter sp. M21] gi|251777351|gb|ACT19932.1| flagellar hook capping protein [Geobacter sp. M21] Length = 221 Score = 80.0 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 3/84 (3%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL--- 74 K + +D FLKL +TQ+++QDP P ++ ++QLA +Q+EQ+ NS LQ +L Sbjct: 19 KKSTGMNKDDFLKLFVTQLQNQDPLNPQDGTQFISQLAQLTQVEQAYNTNSNLQNMLNQG 78 Query: 75 KSNNLAQASSYIGKNITNADGSIS 98 ++ A + IGK + + Sbjct: 79 SNSATLAAVTLIGKQVEAPGSQLE 102 >gi|167034945|ref|YP_001670176.1| flagellar basal body rod modification protein [Pseudomonas putida GB-1] gi|166861433|gb|ABY99840.1| flagellar hook capping protein [Pseudomonas putida GB-1] Length = 233 Score = 80.0 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 32/84 (38%), Positives = 54/84 (64%), Gaps = 3/84 (3%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69 ++ + + LG+DAFL+LL+TQ+K+Q+P +P + E VAQLA FS +E +N + Sbjct: 23 SKNNSNTGAAGSALGKDAFLQLLVTQMKNQNPLDPQENGEFVAQLAQFSSLESMQSLNDS 82 Query: 70 LQEL---LKSNNLAQASSYIGKNI 90 + + L+S+ QASS +G+N+ Sbjct: 83 VTYIAAGLQSSQALQASSLVGRNV 106 >gi|217972597|ref|YP_002357348.1| flagellar basal body rod modification protein [Shewanella baltica OS223] gi|217497732|gb|ACK45925.1| flagellar hook capping protein [Shewanella baltica OS223] Length = 256 Score = 80.0 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 5/112 (4%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS---TLQE 72 + L QD F LL Q+ QDP +P+ + +AQ+A FS ++ ++N L Sbjct: 50 PEAKSQQLTQDDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGIGKLNDEIVNLNS 109 Query: 73 LLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPIT 124 ++ S+ QAS +G+ + + +G ++A + G+ + EI + Sbjct: 110 VMTSSQALQASGLVGRKVLIP--TDTGNISAESPTMKGVVSTPDKIPEITVR 159 >gi|307293788|ref|ZP_07573632.1| flagellar hook capping protein [Sphingobium chlorophenolicum L-1] gi|306879939|gb|EFN11156.1| flagellar hook capping protein [Sphingobium chlorophenolicum L-1] Length = 218 Score = 80.0 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 11/115 (9%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---L 74 K +GQ FL+LL Q++ QDP EP+ ++ VAQ+A + +MN TL+ L L Sbjct: 23 TGKSEMGQADFLRLLTAQMQTQDPFEPVDNAQMVAQMATITNSSGIAEMNQTLKNLASEL 82 Query: 75 KSNNLAQASSYIGKNIT--------NADGSISGVVNAIQVSSTGLTAITVDNTEI 121 + L A+S+IGK++ +A G G V+ +S + N + Sbjct: 83 TGSRLGDAASWIGKSMLIQSNIAAPDAAGQYMGQVSFADATSGASVDLIDGNGNV 137 >gi|296534176|ref|ZP_06896666.1| basal-body rod modification protein FlgD [Roseomonas cervicalis ATCC 49957] gi|296265496|gb|EFH11631.1| basal-body rod modification protein FlgD [Roseomonas cervicalis ATCC 49957] Length = 226 Score = 80.0 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 5/100 (5%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQD--AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 + T + + +K LG D +FL LL TQ+++QDP +P +SE QLA FSQ+ Sbjct: 6 LTTAASSANSTTQSATAKTQLGSDMQSFLTLLTTQLQNQDPMDPTDSSEFATQLAQFSQV 65 Query: 61 EQSVQMNSTLQELL---KSNNLAQASSYIGKNITNADGSI 97 EQ + N+ L+ LL +S +L ++ +G + + I Sbjct: 66 EQQIATNAHLESLLSLQQSASLLSSTGLVGNTVEVSSSQI 105 >gi|261821152|ref|YP_003259258.1| flagellar basal body rod modification protein [Pectobacterium wasabiae WPP163] gi|261605165|gb|ACX87651.1| flagellar hook capping protein [Pectobacterium wasabiae WPP163] Length = 224 Score = 80.0 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 3/96 (3%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 T T + K+ Q+ FL LL+ Q+K+QDPT PM + V+QLA + + Sbjct: 12 TRTQNTSSTTAVEKNSSADLQNQFLTLLVAQLKNQDPTNPMSNDQLVSQLAQLNTVSGIE 71 Query: 65 QMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 ++N+TL + + +N QA++ IG+++ I Sbjct: 72 KLNTTLGSISGQINNNQSMQATTLIGRSVMVPGKEI 107 >gi|294635609|ref|ZP_06714086.1| flagellar basal-body rod modification protein FlgD [Edwardsiella tarda ATCC 23685] gi|291091061|gb|EFE23622.1| flagellar basal-body rod modification protein FlgD [Edwardsiella tarda ATCC 23685] Length = 232 Score = 80.0 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 31/100 (31%), Positives = 54/100 (54%), Gaps = 4/100 (4%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 + + VN + + + + + L Q+ FL LL+ Q+++QDPT P++ +E QLA S + Sbjct: 11 VNTGSSVNASSKNGLVADNSQDL-QNNFLTLLVAQLRNQDPTNPLQNNELTTQLAQISTV 69 Query: 61 EQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 ++N+TL + + SN QASS IG + +I Sbjct: 70 SGIEKLNTTLGSISGQINSNQSLQASSLIGHGVMIPGKTI 109 >gi|222053609|ref|YP_002535971.1| flagellar hook capping protein [Geobacter sp. FRC-32] gi|221562898|gb|ACM18870.1| flagellar hook capping protein [Geobacter sp. FRC-32] Length = 221 Score = 80.0 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 3/79 (3%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN---L 79 L +D FL+L +TQ+++QDP P +S+ + QLA +++EQS N+ LQ +L +N Sbjct: 24 LNKDDFLRLFVTQLQNQDPLNPQDSSQFITQLAQITEVEQSYNTNTNLQSILTQSNNMAS 83 Query: 80 AQASSYIGKNITNADGSIS 98 A S+IGK+I IS Sbjct: 84 LSAVSFIGKSILAPGSQIS 102 >gi|253990128|ref|YP_003041484.1| flagellar basal body rod modification protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211639035|emb|CAR67649.1| basal-body rod modification protein flgd (flagellar protein for th initiation of hook assembly) [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781578|emb|CAQ84741.1| basal-body rod modification protein flgd (flagellar protein for th initiation of hook assembly) [Photorhabdus asymbiotica] Length = 232 Score = 80.0 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 3/97 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 NT V Q +K F++LLI Q+K+QDPT PM+ +E A LA + +E Sbjct: 13 NTTVRELAQNSKTNKKNSEELNSNFMQLLIAQVKNQDPTNPMQNNELTAHLAQINMLEGI 72 Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 ++N+T+ + + +N Q S+ IG+ + +I Sbjct: 73 EKLNTTVGSIVGQINNNQSLQVSALIGRGVMIPGDTI 109 >gi|197285511|ref|YP_002151383.1| basal-body rod modification protein [Proteus mirabilis HI4320] gi|194682998|emb|CAR43447.1| basal-body rod modification protein [Proteus mirabilis HI4320] Length = 264 Score = 80.0 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 3/98 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 NT + + K + FL LLITQ+++QDPT PM+ +E +QLA S +E Sbjct: 13 NTIIGEAPSSYHTKKGGSDDIKGNFLTLLITQMQNQDPTNPMQNNELTSQLAQISTVEGI 72 Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSIS 98 +N T+ + + + +A+S + + A IS Sbjct: 73 ETLNKTVNTIVGQIDQSQALRATSLVNHMVMIAGNEIS 110 >gi|296103612|ref|YP_003613758.1| Flagellar basal-body rod modification protein, FlgD [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058071|gb|ADF62809.1| Flagellar basal-body rod modification protein, FlgD [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 234 Score = 79.6 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 51/93 (54%), Gaps = 3/93 (3%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 M +++ N + + + + + F+ LL+ Q+K+QDPT PM ++ +QLA F+ Sbjct: 1 MAVSSINNNSGAGGTGTGNSAADLSNQFMTLLVAQMKNQDPTNPMDNNQLTSQLAQFNMA 60 Query: 61 EQSVQMNST---LQELLKSNNLAQASSYIGKNI 90 ++NS+ +Q ++ AS+++G+++ Sbjct: 61 AGVEKLNSSVAGVQAMMIQLGSMSASAWVGRSV 93 >gi|114762150|ref|ZP_01441618.1| Possible FlgD protein [Pelagibaca bermudensis HTCC2601] gi|114545174|gb|EAU48177.1| Possible FlgD protein [Roseovarius sp. HTCC2601] Length = 224 Score = 79.6 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 28/82 (34%), Positives = 50/82 (60%), Gaps = 3/82 (3%) Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 +E +K+ + + + FLK+L TQ+++QDP P+ +++ QLA FS +EQ V N L Sbjct: 23 EEQTKNAAVLSSDFETFLKMLTTQMQNQDPLNPVDSTDYATQLATFSSVEQQVLTNDLLG 82 Query: 72 ELLKSN---NLAQASSYIGKNI 90 +L ++ L Q S+IG+++ Sbjct: 83 DLAQAMTGGTLQQLGSWIGRDV 104 >gi|313624711|gb|EFR94666.1| flagellar hook capping protein [Listeria innocua FSL J1-023] Length = 140 Score = 79.6 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 38/126 (30%), Positives = 70/126 (55%), Gaps = 7/126 (5%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 S KTLG+D F+KL +T +++QDP+ P+ +E ++Q+A S MEQ M + + Sbjct: 14 TNNVVTSSVSKTLGKDDFMKLFLTSLQYQDPSSPLDTNEMMSQMAQLSLMEQVANMTTAV 73 Query: 71 QEL---LKSNNLAQASSYIGKN---ITNADGSISGVVNAIQVSSTGLTAITVD-NTEIPI 123 +L +++ L A ++IGK+ ++ ISG V ++Q ++ G+ D ++ +P+ Sbjct: 74 DKLSEQAQNSALQSAVNFIGKDIKGVSLNGEVISGQVESVQQTTNGVMLKIKDQDSLVPM 133 Query: 124 TTGIRI 129 T I Sbjct: 134 TYVTEI 139 >gi|163856434|ref|YP_001630732.1| flagellar basal body rod modification protein [Bordetella petrii DSM 12804] gi|163260162|emb|CAP42464.1| basal-body rod modification protein FlgD [Bordetella petrii] Length = 231 Score = 79.6 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 8/103 (7%) Query: 3 INTEVNPT----QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58 +N + T Q + S ++L QD FL LL+TQ+K+QDP PM+ +E +QLA S Sbjct: 4 VNNSTDSTGLALAQSGVGANSAQSL-QDRFLTLLVTQLKNQDPLNPMENAELTSQLAQIS 62 Query: 59 QMEQSVQMNSTLQELLKS---NNLAQASSYIGKNITNADGSIS 98 +E + +TL + + A S IGK + IS Sbjct: 63 TVEGITNLKNTLLAISGQIDVSQSMNAVSMIGKGVLIPGEKIS 105 >gi|302874595|ref|YP_003843228.1| flagellar hook capping protein [Clostridium cellulovorans 743B] gi|307690794|ref|ZP_07633240.1| flagellar hook capping protein [Clostridium cellulovorans 743B] gi|302577452|gb|ADL51464.1| flagellar hook capping protein [Clostridium cellulovorans 743B] Length = 217 Score = 79.6 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 60/134 (44%), Gaps = 14/134 (10%) Query: 4 NTEVNPTQQEFSKS-KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 N V T+ KT ++ F++LL Q+K+QDP+ P +++ VAQ+A FS +EQ Sbjct: 21 NGVVTGTKTANGTKIVDGKTTDKNMFVRLLSAQLKNQDPSNPADSTQYVAQMAQFSALEQ 80 Query: 63 SVQMNSTLQELLKSNNLAQASSYIGKNIT-----NADGSISGVVNAIQVSSTGLTAITVD 117 +N+T+ + A++ +GK + I+G V + + Sbjct: 81 MTNLNTTMT-------FSSANNLVGKTVVTKYTDEKGNYITGTVAGTTQKDGNVYLLLDS 133 Query: 118 -NTEIPITTGIRIS 130 + + ++ + + Sbjct: 134 ADGKFTMSDILSVE 147 >gi|223039165|ref|ZP_03609455.1| flagellar hook assembly protein [Campylobacter rectus RM3267] gi|222879526|gb|EEF14617.1| flagellar hook assembly protein [Campylobacter rectus RM3267] Length = 234 Score = 79.6 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 3/89 (3%) Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 Q+ + + L +DAF+KLL+T++++QDPT PM + + Q + + +E N +Q Sbjct: 25 QKAAGTNPNAQLDKDAFMKLLLTELQYQDPTSPMDTEKMLTQTSQLAALEMQENTNKMMQ 84 Query: 72 EL---LKSNNLAQASSYIGKNITNADGSI 97 +L LK++ A S +GK D I Sbjct: 85 KLADQLKNSTNMYAVSVLGKMAKIGDSGI 113 >gi|16799779|ref|NP_470047.1| flagellar basal body rod modification protein [Listeria innocua Clip11262] gi|16413156|emb|CAC95936.1| lin0704 [Listeria innocua Clip11262] gi|313620065|gb|EFR91578.1| flagellar hook capping protein [Listeria innocua FSL S4-378] Length = 140 Score = 79.6 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 38/132 (28%), Positives = 72/132 (54%), Gaps = 7/132 (5%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 + + S KTLG+D F+KL +T +++QDP+ P+ +E ++Q+A S MEQ Sbjct: 8 SGASQDTNNAVTSSVSKTLGKDDFMKLFLTSLQYQDPSSPLDTNEMMSQMAQLSLMEQVA 67 Query: 65 QMNSTLQEL---LKSNNLAQASSYIGKN---ITNADGSISGVVNAIQVSSTGLTAITVD- 117 M + + +L +++ L A ++IGK+ ++ ISG V ++Q ++ G+ D Sbjct: 68 NMTTAVDKLSEQAQNSALQSAVNFIGKDIKGVSLNGEVISGQVESVQQTTNGVMLKIKDQ 127 Query: 118 NTEIPITTGIRI 129 ++ +P+T I Sbjct: 128 DSLVPMTYVTEI 139 >gi|126738592|ref|ZP_01754297.1| basal-body rod modification protein FlgD [Roseobacter sp. SK209-2-6] gi|126720391|gb|EBA17097.1| basal-body rod modification protein FlgD [Roseobacter sp. SK209-2-6] Length = 228 Score = 79.6 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 8/116 (6%) Query: 2 EINTEVNPTQ-----QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAV 56 E+++ PT S + T D F+KLL Q ++QDP EPM +E +QLA Sbjct: 4 EVSSVFTPTSTGANSSPASTGGTNLTSDFDTFIKLLTAQAQYQDPLEPMDNTEYASQLAE 63 Query: 57 FSQMEQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSST 109 FS +EQ V N+ L + L N+A + ++G + + N + V+ Sbjct: 64 FSMVEQQVLTNTNLSTVHEQLGLGNMASLTGWVGMEVRAPAPAQFDGTNPVNVAPN 119 >gi|153950222|ref|YP_001401291.1| flagellar basal body rod modification protein [Yersinia pseudotuberculosis IP 31758] gi|152961717|gb|ABS49178.1| basal-body rod modification protein FlgD [Yersinia pseudotuberculosis IP 31758] Length = 228 Score = 79.6 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 8/87 (9%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q++FL LL+ Q+K+QDPT PM+ +E QLA + + ++N+TL + + SN Sbjct: 32 QNSFLTLLVAQLKNQDPTNPMENNELTTQLAQINTVSGIEKLNTTLGAITGQIDSNQSLY 91 Query: 82 ASSYIGKNITNAD-----GSISGVVNA 103 A+S IG+ + GS G V+ Sbjct: 92 ATSLIGRGVMVPGTNIFTGSTDGTVST 118 >gi|315127354|ref|YP_004069357.1| flagellar basal body rod modification protein [Pseudoalteromonas sp. SM9913] gi|315015868|gb|ADT69206.1| flagellar basal body rod modification protein [Pseudoalteromonas sp. SM9913] Length = 225 Score = 79.6 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 7/105 (6%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 ++ K + L Q+ F LL Q+ +QDP++P + +AQ+ F+ E +NS Sbjct: 19 DKQVPKKEESDALTQEDFFSLLTQQLSYQDPSKPADNDQMIAQMTNFTMAEGISNLNSNF 78 Query: 71 QEL---LKSNNLAQASSYIGKNITNADGSI----SGVVNAIQVSS 108 + L + SN+ QAS+ +GK ++ SG V V+ Sbjct: 79 ESLAASMTSNSALQASTLVGKQALLESDTLELNESGEVKGAIVAE 123 >gi|324113870|gb|EGC07844.1| flagellar hook capping protein [Escherichia fergusonii B253] gi|325497617|gb|EGC95476.1| flagellar basal body rod modification protein [Escherichia fergusonii ECD227] Length = 231 Score = 79.6 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 3/99 (3%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 + + T S + Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + Sbjct: 9 DASNNGVSTTSNNSLTGGNAADLQSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVS 68 Query: 62 QSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 ++N+TL + + ++ QASS IG + +I Sbjct: 69 GIEKLNTTLGAISGQIDNSQSLQASSLIGHGVMIPGTTI 107 >gi|168703390|ref|ZP_02735667.1| Flagellar hook capping protein [Gemmata obscuriglobus UQM 2246] Length = 120 Score = 79.6 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 61/119 (51%), Gaps = 4/119 (3%) Query: 14 FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73 S + + +GQD FL+LLI Q+++QDP +P+ + + QLA + + +N+ E+ Sbjct: 2 ASGTSALAGVGQDQFLQLLIAQLQNQDPLDPVSNQDFIQQLATLNTVSGIQSLNANFSEM 61 Query: 74 LKSNNLAQASSYIGKNIT---NADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129 LK + Q + +GK I + + +G V ++Q S G + V + ++ + + Sbjct: 62 LKLQQITQGADLVGKTIEYTLTGEPAKTGKVTSVQ-SQDGKFVLQVGSDQVLLDQINSV 119 >gi|254420677|ref|ZP_05034401.1| flagellar hook capping protein, putative [Brevundimonas sp. BAL3] gi|196186854|gb|EDX81830.1| flagellar hook capping protein, putative [Brevundimonas sp. BAL3] Length = 238 Score = 79.6 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 2/70 (2%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL--KSNNLAQAS 83 + FL LL TQ+K+QDP P+ ++E AQL + +EQ + N L L+ +S NL A+ Sbjct: 26 ETFLTLLTTQMKNQDPLSPLDSNEFTAQLTQMAGVEQQLLTNDLLTSLVAAQSGNLNNAA 85 Query: 84 SYIGKNITNA 93 +YIGK +T A Sbjct: 86 AYIGKEVTAA 95 >gi|33601540|ref|NP_889100.1| flagellar basal body rod modification protein [Bordetella bronchiseptica RB50] gi|33575976|emb|CAE33055.1| basal-body rod modification protein FlgD [Bordetella bronchiseptica RB50] Length = 234 Score = 79.6 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 3/106 (2%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74 + S S QD FL LL+TQ+++QDP PM+ +E +QLA S +E + +T+ + Sbjct: 18 AGSNSAAQGIQDQFLTLLVTQLRNQDPLNPMENAELTSQLAQISTVEGINNLKNTMLAIS 77 Query: 75 KSNNLAQ---ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVD 117 +++Q A S IGK + +S + + G T +D Sbjct: 78 GQIDVSQSMDAVSMIGKGVLMPGDKVSLGTDPNDPAQRGATPFGID 123 >gi|238751761|ref|ZP_04613249.1| Flagellar hook capping protein [Yersinia rohdei ATCC 43380] gi|238710032|gb|EEQ02262.1| Flagellar hook capping protein [Yersinia rohdei ATCC 43380] Length = 230 Score = 79.6 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 4/84 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q++FL LL+ Q+K+QDPT PM+ +E QLA + + ++N+TL + L S+ Q Sbjct: 34 QNSFLTLLVAQLKNQDPTNPMQNNELTTQLAQINTVSGIEKLNTTLGSISGQLDSSQSLQ 93 Query: 82 ASSYIGKNITNADGSI-SGVVNAI 104 AS+ IG + SI SG + + Sbjct: 94 ASTLIGHGVMIPGTSILSGTKDGV 117 >gi|119899028|ref|YP_934241.1| basal-body rod modification protein FlgD [Azoarcus sp. BH72] gi|119671441|emb|CAL95354.1| probable basal-body rod modification protein FlgD [Azoarcus sp. BH72] Length = 224 Score = 79.6 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 25/77 (32%), Positives = 47/77 (61%), Gaps = 3/77 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL---AQ 81 ++ FL LL TQ+++QDP PM+ +E +QLA S +E ++NS + +LL+S Q Sbjct: 33 KNQFLTLLTTQLQNQDPMNPMENAELTSQLAQLSTVEGIEKLNSMMTQLLQSQASAEGLQ 92 Query: 82 ASSYIGKNITNADGSIS 98 A++ +G+ + +++ Sbjct: 93 AAALVGRGVLVEGKNLT 109 >gi|153952103|ref|YP_001397314.1| flagellar basal body rod modification protein [Campylobacter jejuni subsp. doylei 269.97] gi|152939549|gb|ABS44290.1| flagellar hook assembly protein [Campylobacter jejuni subsp. doylei 269.97] Length = 287 Score = 79.6 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 10/92 (10%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 S TL +DAFLKLL+ +++HQDPT+PM + + + Q + S +E N+T+Q+++++ Sbjct: 41 SNPNATLDKDAFLKLLLVELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVET 100 Query: 77 NN----------LAQASSYIGKNITNADGSIS 98 A IGK T + + Sbjct: 101 MQKLSDSFSASMSTSALGAIGKMATVNENKVK 132 >gi|126175147|ref|YP_001051296.1| flagellar basal body rod modification protein [Shewanella baltica OS155] gi|125998352|gb|ABN62427.1| flagellar hook capping protein [Shewanella baltica OS155] Length = 256 Score = 79.6 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 55/128 (42%), Gaps = 12/128 (9%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS---TLQE 72 + L QD F LL Q+ QDP +P+ + +AQ+A FS ++ ++N L Sbjct: 50 PEAKSQQLTQDDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGIGKLNDEIVNLNS 109 Query: 73 LLKSNNLAQASSYIGKNI---------TNADGSISGVVNAIQVSSTGLTAITVDNTEIPI 123 ++ S+ QAS +G+ + + +I GV++ + + ++ Sbjct: 110 VMTSSQALQASGLVGRKVLIPTDTGNISAESPTIKGVISTPSKIPELSVRVEDEKGQVVA 169 Query: 124 TTGIRISN 131 T + S+ Sbjct: 170 TFKVDGSD 177 >gi|326319096|ref|YP_004236768.1| flagellar hook capping protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375932|gb|ADX48201.1| flagellar hook capping protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 216 Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 3/99 (3%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 I + S S + QD FLKLL+ Q+ +QDP P+ ++ +Q+A + + Sbjct: 6 IGSTATVNTGSSSNSATDPAAAQDRFLKLLVAQLNNQDPMNPLDNAQMTSQMAQINTVTG 65 Query: 63 SVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSIS 98 Q+N ++Q + + Q + IG+N+ ++ Sbjct: 66 IQQLNLSMQTMAEQFTTMQTLQGTMMIGRNVLTEGSKMT 104 >gi|322421728|ref|YP_004200951.1| flagellar hook capping protein [Geobacter sp. M18] gi|320128115|gb|ADW15675.1| flagellar hook capping protein [Geobacter sp. M18] Length = 221 Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 3/84 (3%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77 K + +D FLKL +TQ+++QDP P ++ ++QLA +Q+EQ+ N+ LQ LL Sbjct: 19 KKSTGMNKDDFLKLFVTQLQNQDPLNPQDGTQFISQLAQLTQVEQAYNTNTNLQNLLGQG 78 Query: 78 N---LAQASSYIGKNITNADGSIS 98 + A S IGK + + Sbjct: 79 SNAGTLAAVSLIGKQVEAPGSQVE 102 >gi|157414367|ref|YP_001481623.1| flagellar basal body rod modification protein [Campylobacter jejuni subsp. jejuni 81116] gi|157385331|gb|ABV51646.1| putative flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni 81116] gi|307747009|gb|ADN90279.1| Flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni M1] gi|315931631|gb|EFV10596.1| flagellar hook capping family protein [Campylobacter jejuni subsp. jejuni 327] Length = 294 Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 10/92 (10%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 S TL +DAFLKLL+ +++HQDPT+PM + + + Q + S +E N+T+Q+++++ Sbjct: 40 SNPNATLDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVET 99 Query: 77 NN----------LAQASSYIGKNITNADGSIS 98 A IGK T +D I Sbjct: 100 MQKLSDSFSTSMSTSALGAIGKMATVSDNKIK 131 >gi|57237056|ref|YP_178068.1| flagellar basal body rod modification protein [Campylobacter jejuni RM1221] gi|86149626|ref|ZP_01067856.1| flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni CF93-6] gi|86151430|ref|ZP_01069645.1| flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni 260.94] gi|86154065|ref|ZP_01072266.1| flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni HB93-13] gi|88597673|ref|ZP_01100906.1| flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni 84-25] gi|121613172|ref|YP_999768.1| flagellar basal body rod modification protein [Campylobacter jejuni subsp. jejuni 81-176] gi|148926856|ref|ZP_01810534.1| putative flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni CG8486] gi|167004742|ref|ZP_02270500.1| putative flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni 81-176] gi|205356433|ref|ZP_03223197.1| flagellar hook protein flgE [Campylobacter jejuni subsp. jejuni CG8421] gi|218561734|ref|YP_002343513.1| flagellar basal body rod modification protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|315123657|ref|YP_004065661.1| putative flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|57165860|gb|AAW34639.1| flagellar hook assembly protein [Campylobacter jejuni RM1221] gi|85839894|gb|EAQ57153.1| flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni CF93-6] gi|85841777|gb|EAQ59024.1| flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni 260.94] gi|85842479|gb|EAQ59693.1| flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni HB93-13] gi|87248965|gb|EAQ71927.1| flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni 81-176] gi|88189977|gb|EAQ93953.1| flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni 84-25] gi|112359440|emb|CAL34222.1| putative flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|145844433|gb|EDK21541.1| putative flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni CG8486] gi|205345620|gb|EDZ32259.1| flagellar hook protein flgE [Campylobacter jejuni subsp. jejuni CG8421] gi|315017379|gb|ADT65472.1| putative flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315057483|gb|ADT71812.1| Flagellar basal-body rod modification protein FlgD [Campylobacter jejuni subsp. jejuni S3] gi|315929147|gb|EFV08372.1| flagellar hook capping family protein [Campylobacter jejuni subsp. jejuni 305] Length = 294 Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 10/92 (10%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 S TL +DAFLKLL+ +++HQDPT+PM + + + Q + S +E N+T+Q+++++ Sbjct: 40 SNPNATLDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVET 99 Query: 77 NN----------LAQASSYIGKNITNADGSIS 98 A IGK T +D I Sbjct: 100 MQKLSDSFSTSMSTSALGAIGKMATVSDNKIK 131 >gi|170725954|ref|YP_001759980.1| flagellar basal body rod modification protein [Shewanella woodyi ATCC 51908] gi|169811301|gb|ACA85885.1| flagellar hook capping protein [Shewanella woodyi ATCC 51908] Length = 270 Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 3/84 (3%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS---TLQE 72 + + L Q+ F LL Q+ QDP +P+ + +AQ+A FS ++ +N L Sbjct: 64 PEPNNQELTQEDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGINNLNDEIVNLNT 123 Query: 73 LLKSNNLAQASSYIGKNITNADGS 96 ++ S+ QAS +G+ + + Sbjct: 124 VMTSSQALQASGLVGQKVLIPSDT 147 >gi|302878275|ref|YP_003846839.1| flagellar hook capping protein [Gallionella capsiferriformans ES-2] gi|302581064|gb|ADL55075.1| flagellar hook capping protein [Gallionella capsiferriformans ES-2] Length = 227 Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 3/92 (3%) Query: 7 VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66 +N T + S + QD F+KLL+TQ+K+QDP PM ++ +Q+A S + ++ Sbjct: 18 LNGTSSTSTASATSAAASQDRFMKLLVTQLKNQDPLNPMDNAQMTSQMAQISTVSGIDKL 77 Query: 67 NSTLQELLKS---NNLAQASSYIGKNITNADG 95 N+TLQ L S N QA++ IG+ + Sbjct: 78 NATLQALSASMTPNQTLQAATMIGRGVLVTGN 109 >gi|120613058|ref|YP_972736.1| flagellar hook capping protein [Acidovorax citrulli AAC00-1] gi|120591522|gb|ABM34962.1| flagellar hook capping protein [Acidovorax citrulli AAC00-1] Length = 216 Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 46/99 (46%), Gaps = 3/99 (3%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 I + S S + QD FLKLL+ Q+ +QDP P+ ++ +Q+A + + Sbjct: 6 IGSTATVNTGSSSNSATDPAAAQDRFLKLLVAQLNNQDPMNPLDNAQMTSQMAQINTVTG 65 Query: 63 SVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSIS 98 Q+N ++Q + + Q + IG+++ ++ Sbjct: 66 IQQLNLSMQTMAEQFSTMQTLQGTMMIGRSVLTEGSKMT 104 >gi|293605002|ref|ZP_06687398.1| flagellar hook assembly protein FlgD [Achromobacter piechaudii ATCC 43553] gi|292816607|gb|EFF75692.1| flagellar hook assembly protein FlgD [Achromobacter piechaudii ATCC 43553] Length = 232 Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 37/128 (28%), Positives = 59/128 (46%), Gaps = 4/128 (3%) Query: 7 VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66 + Q + S + + L QD FLKLL TQ+++QDP PM+ +E +QLA + +E + Sbjct: 13 LAQAQSNANNSVTSQGL-QDQFLKLLTTQLQNQDPLNPMQNAELTSQLAQIATVEGISNL 71 Query: 67 NSTLQELLKS---NNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPI 123 ST+Q + + A S IGK + I V+ + T +D Sbjct: 72 KSTIQAISGQIDVSQSMNAVSMIGKGVLIPGNKIKLGVDGDNAAERVATPYGLDLQSDAQ 131 Query: 124 TTGIRISN 131 IRI++ Sbjct: 132 KVQIRIAD 139 >gi|183598616|ref|ZP_02960109.1| hypothetical protein PROSTU_02016 [Providencia stuartii ATCC 25827] gi|188020795|gb|EDU58835.1| hypothetical protein PROSTU_02016 [Providencia stuartii ATCC 25827] Length = 279 Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 26/86 (30%), Positives = 51/86 (59%), Gaps = 3/86 (3%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL- 73 +K+KS+ +D FLK+++TQ+++QDPT+PM+ +E +QLA + +E +++ + + Sbjct: 27 NKNKSQTDDMRDTFLKMIVTQMQNQDPTKPMENAELTSQLAQIATLESMNKLSDKVSGIS 86 Query: 74 --LKSNNLAQASSYIGKNITNADGSI 97 + S QA+ +GK + I Sbjct: 87 SQIGSGQSLQATQLVGKGVLIPRNEI 112 >gi|227328337|ref|ZP_03832361.1| flagellar basal body rod modification protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 224 Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 3/96 (3%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 V T + K+ Q+ FL LL+ Q+K+QDPT PM + V+QLA + + Sbjct: 12 NSVQSTSSTTAIEKNSSADLQNQFLTLLVAQLKNQDPTNPMSNDQLVSQLAQLNTVSGIE 71 Query: 65 QMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 ++N+TL + + +N QA++ IG ++ I Sbjct: 72 KLNTTLGSISGQINNNQSMQATTLIGHSVMIPGKDI 107 >gi|254973918|ref|ZP_05270390.1| putative basal-body rod modification protein [Clostridium difficile QCD-66c26] gi|255091305|ref|ZP_05320783.1| putative basal-body rod modification protein [Clostridium difficile CIP 107932] gi|255312962|ref|ZP_05354545.1| putative basal-body rod modification protein [Clostridium difficile QCD-76w55] gi|255515721|ref|ZP_05383397.1| putative basal-body rod modification protein [Clostridium difficile QCD-97b34] gi|255648815|ref|ZP_05395717.1| putative basal-body rod modification protein [Clostridium difficile QCD-37x79] gi|260682034|ref|YP_003213319.1| putative basal-body rod modification protein [Clostridium difficile CD196] gi|260685632|ref|YP_003216765.1| putative basal-body rod modification protein [Clostridium difficile R20291] gi|306518930|ref|ZP_07405277.1| putative basal-body rod modification protein [Clostridium difficile QCD-32g58] gi|260208197|emb|CBA60540.1| putative basal-body rod modification protein [Clostridium difficile CD196] gi|260211648|emb|CBE01905.1| putative basal-body rod modification protein [Clostridium difficile R20291] Length = 202 Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 13/133 (9%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 T +D F+K+L+ Q+ +QDP P +E V+QLA F+ +E+ Sbjct: 39 GNQTVTDNGTPIIGQGDDADKDLFMKILVAQMGNQDPMNPQDPTEYVSQLAQFATLEKMS 98 Query: 65 QMNSTLQELLK-------SNNLAQASSYIGK-----NITNADGSISGVVNAIQVSSTGLT 112 MN L LL ++ L+ A+S IGK D +I GVV + + + Sbjct: 99 AMNDKLDILLALSNSTLINSALSMATSLIGKEVEVSGEEEEDENIVGVVKSTYIKDGEVH 158 Query: 113 A-ITVDNTEIPIT 124 + VD ++ + Sbjct: 159 LELEVDGSDKTVG 171 >gi|255523698|ref|ZP_05390664.1| flagellar hook capping protein [Clostridium carboxidivorans P7] gi|296186701|ref|ZP_06855103.1| flagellar hook capping protein [Clostridium carboxidivorans P7] gi|255512567|gb|EET88841.1| flagellar hook capping protein [Clostridium carboxidivorans P7] gi|296048738|gb|EFG88170.1| flagellar hook capping protein [Clostridium carboxidivorans P7] Length = 235 Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 63/122 (51%), Gaps = 12/122 (9%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 ++ T + K + + ++AF K+L ++ +QDP+ +E V+Q+A FS +EQ Sbjct: 18 DSNATKTSRGTRIVKKGQDMDKNAFFKILAAELSNQDPSNAKDGTEYVSQMAQFSSLEQM 77 Query: 64 VQMNSTLQELLKSNNLAQASSYIGKNI----TNADGSI-SGVVNAIQVSSTGLTAITVDN 118 V +N+T++ L A++ IGK + + +G SG+V+++ S + + Sbjct: 78 VNLNTTMK-------LTGANNLIGKTVNLNKLDPNGKFYSGLVSSVVKSGDTVQLNVLVG 130 Query: 119 TE 120 T+ Sbjct: 131 TK 132 >gi|78485813|ref|YP_391738.1| flagellar hook capping protein [Thiomicrospira crunogena XCL-2] gi|78364099|gb|ABB42064.1| Flagellar hook capping protein FlgD [Thiomicrospira crunogena XCL-2] Length = 227 Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 34/101 (33%), Positives = 58/101 (57%), Gaps = 6/101 (5%) Query: 4 NTEVNPTQQEFSKSKSK---KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 NT+ Q+ + KS + LGQ FL+LL TQ+++QDP +PM + V L SQ+ Sbjct: 10 NTDYMKALQQSTNGKSNAPDQQLGQADFLRLLTTQLQNQDPNKPMDPTNFVTDLTQMSQL 69 Query: 61 EQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSIS 98 E + +MN ++ + L++ + Q++S IGKN+ ++S Sbjct: 70 EATTKMNQSMLAMTTGLQNMQVMQSASLIGKNVQAIGDTMS 110 >gi|332994163|gb|AEF04218.1| flagellar basal body rod modification protein [Alteromonas sp. SN2] Length = 229 Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 29/107 (27%), Positives = 55/107 (51%), Gaps = 8/107 (7%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---L 74 +++ L Q+ F +L Q+ +QDPT+P+ + VAQ+ F+ + Q+N + + Sbjct: 26 GTEQQLSQEDFFAMLTEQLANQDPTKPVDNDQMVAQMTSFTMADGISQLNDKFESFAASM 85 Query: 75 KSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEI 121 SN QASS IG+N+ + G V + + G++ + V+ + Sbjct: 86 TSNQALQASSLIGQNVL-----VQGNVGHMSSDAAGVSGVVVNEQSV 127 >gi|305432528|ref|ZP_07401690.1| flagellar hook assembly protein [Campylobacter coli JV20] gi|304444567|gb|EFM37218.1| flagellar hook assembly protein [Campylobacter coli JV20] Length = 286 Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 10/92 (10%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 S TL +DAFLKLL+ +++HQDPT+PM + + + Q + S +E N+T+Q+++++ Sbjct: 39 SNPNATLDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVET 98 Query: 77 NNLA----------QASSYIGKNITNADGSIS 98 L A IGK T +D I Sbjct: 99 MQLLSNSFSTSMSTSAIGAIGKMATVSDNKIK 130 >gi|51596010|ref|YP_070201.1| flagellar basal body rod modification protein [Yersinia pseudotuberculosis IP 32953] gi|170024648|ref|YP_001721153.1| flagellar basal body rod modification protein [Yersinia pseudotuberculosis YPIII] gi|186895113|ref|YP_001872225.1| flagellar basal body rod modification protein [Yersinia pseudotuberculosis PB1/+] gi|51589292|emb|CAH20913.1| basal-body rod modification protein FlgD [Yersinia pseudotuberculosis IP 32953] gi|169751182|gb|ACA68700.1| flagellar hook capping protein [Yersinia pseudotuberculosis YPIII] gi|186698139|gb|ACC88768.1| flagellar hook capping protein [Yersinia pseudotuberculosis PB1/+] Length = 228 Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 8/87 (9%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q++FL LL+ Q+K+QDPT PM+ +E QLA + + ++N+TL + + S+ Sbjct: 32 QNSFLTLLVAQLKNQDPTNPMENNELTTQLAQINTVSGIEKLNTTLGAITGQIDSSQSLY 91 Query: 82 ASSYIGKNITNAD-----GSISGVVNA 103 A+S IG+ + GS G V+ Sbjct: 92 ATSLIGRGVMVPGTNIFTGSTDGTVST 118 >gi|291532059|emb|CBK97644.1| Flagellar hook capping protein [Eubacterium siraeum 70/3] Length = 224 Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 63/135 (46%), Gaps = 15/135 (11%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME- 61 + + + F S T+ D F LL+ ++ +QDP EP +E V+Q+A F+ ++ Sbjct: 10 VQSNHEKYKDLFKNSGKNDTISTDTFFSLLMAEMSNQDPLEPTSNTEFVSQMAQFTALQA 69 Query: 62 QSVQMNSTLQELLKSNNLAQASSYIGKNIT----NADGS-ISGVVNAIQVSSTGLTAITV 116 Q + ++ A+ +GK +T + DG+ +SGV + +S + + V Sbjct: 70 QQDNLKYSMSN--------YAAGLVGKTLTMNAQSDDGTLLSGVCTGVNISGS-DVKVVV 120 Query: 117 DNTEIPITTGIRISN 131 D + ++ IS+ Sbjct: 121 DGKQYDLSAVKAISD 135 >gi|167750724|ref|ZP_02422851.1| hypothetical protein EUBSIR_01702 [Eubacterium siraeum DSM 15702] gi|167656403|gb|EDS00533.1| hypothetical protein EUBSIR_01702 [Eubacterium siraeum DSM 15702] Length = 224 Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 63/135 (46%), Gaps = 15/135 (11%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME- 61 + + + F S T+ D F LL+ ++ +QDP EP +E V+Q+A F+ ++ Sbjct: 10 VQSNHEKYKDLFKNSGKNDTISTDTFFSLLMAEMSNQDPLEPTSNTEFVSQMAQFTALQA 69 Query: 62 QSVQMNSTLQELLKSNNLAQASSYIGKNIT----NADGS-ISGVVNAIQVSSTGLTAITV 116 Q + ++ A+ +GK +T + DG+ +SGV + +S + + V Sbjct: 70 QQDNLKYSMSN--------YAAGLVGKTLTMNAQSDDGTLLSGVCTGVNISGS-DVKVVV 120 Query: 117 DNTEIPITTGIRISN 131 D + ++ IS+ Sbjct: 121 DGKQYDLSAVKAISD 135 >gi|302343733|ref|YP_003808262.1| flagellar hook capping protein [Desulfarculus baarsii DSM 2075] gi|301640346|gb|ADK85668.1| flagellar hook capping protein [Desulfarculus baarsii DSM 2075] Length = 282 Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 34/98 (34%), Positives = 55/98 (56%), Gaps = 8/98 (8%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ---ELLKSNNL 79 LGQDAFL + + Q+ +Q+P +PM +E AQLA FSQ+E+ Q+ +++ +L S + Sbjct: 28 LGQDAFLTMFMAQVTNQNPLDPMDNTEFTAQLATFSQLEKLTQIAESMEGISDLQTSMDK 87 Query: 80 AQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVD 117 + A Y+GK +T +SG V + G +D Sbjct: 88 SVALGYLGKEVT-----VSGNVMPVIDGEAGEMGFYLD 120 >gi|114562341|ref|YP_749854.1| flagellar basal body rod modification protein [Shewanella frigidimarina NCIMB 400] gi|114333634|gb|ABI71016.1| flagellar hook capping protein [Shewanella frigidimarina NCIMB 400] Length = 261 Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 3/89 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS-- 68 ++ + L Q+ F LL Q+ QDP +P+ + +AQ+A FS ++ +N Sbjct: 50 EESAIPESKDQMLKQEDFFALLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGISNLNDEI 109 Query: 69 -TLQELLKSNNLAQASSYIGKNITNADGS 96 L ++ S+ QAS +G+ + + Sbjct: 110 LNLNTVMSSSQALQASGLVGRKVLIPSDT 138 >gi|291558203|emb|CBL35320.1| Flagellar hook capping protein [Eubacterium siraeum V10Sc8a] Length = 224 Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 63/135 (46%), Gaps = 15/135 (11%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME- 61 + + + F S T+ D F LL+ ++ +QDP EP +E V+Q+A F+ ++ Sbjct: 10 VQSNHEKYKDLFKNSGKNDTISTDTFFSLLMAEMSNQDPLEPTSNTEFVSQMAQFTALQA 69 Query: 62 QSVQMNSTLQELLKSNNLAQASSYIGKNIT----NADGS-ISGVVNAIQVSSTGLTAITV 116 Q + ++ A+ +GK +T + DG+ +SGV + +S + + V Sbjct: 70 QQDNLKYSMSN--------YAAGLVGKTLTMNAQSDDGTLLSGVCTGVSISGS-DVKVVV 120 Query: 117 DNTEIPITTGIRISN 131 D + ++ IS+ Sbjct: 121 DGKQYDLSAVKAISD 135 >gi|152997583|ref|YP_001342418.1| flagellar hook capping protein [Marinomonas sp. MWYL1] gi|150838507|gb|ABR72483.1| flagellar hook capping protein [Marinomonas sp. MWYL1] Length = 234 Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 5/91 (5%) Query: 24 GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLA 80 Q+ FLKL I Q+K QDPT P ++ VAQ++ FS +E+ ++ L+ + L SN Sbjct: 42 DQNVFLKLYIEQLKGQDPTAPQDTNDMVAQMSQFSSLERLTSISDQLENMATSLTSNQAL 101 Query: 81 QASSYIGKNITNADGSIS--GVVNAIQVSST 109 AS+ +GK+I + V A+Q+ +T Sbjct: 102 SASTLVGKSILMDGSKVKVGDNVEAVQLKAT 132 >gi|315926888|gb|EFV06254.1| flagellar hook capping family protein [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315926905|gb|EFV06271.1| flagellar hook capping family protein [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 294 Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 10/92 (10%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 S TL +DAFLKLL+ +++HQDPT+PM + + + Q + S +E N+T+Q+++++ Sbjct: 40 SNPNATLDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVET 99 Query: 77 NN----------LAQASSYIGKNITNADGSIS 98 A IGK T +D I Sbjct: 100 MQKLSDSFSTSMSTSALGAIGKMATVSDNKIK 131 >gi|153001473|ref|YP_001367154.1| flagellar basal body rod modification protein [Shewanella baltica OS185] gi|160876204|ref|YP_001555520.1| flagellar basal body rod modification protein [Shewanella baltica OS195] gi|151366091|gb|ABS09091.1| flagellar hook capping protein [Shewanella baltica OS185] gi|160861726|gb|ABX50260.1| flagellar hook capping protein [Shewanella baltica OS195] gi|315268394|gb|ADT95247.1| flagellar hook capping protein [Shewanella baltica OS678] Length = 256 Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 5/112 (4%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS---TLQE 72 + L QD F LL Q+ QDP +P+ + +AQ+A FS ++ ++N L Sbjct: 50 PEAKSQQLTQDDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGIGKLNDQIVNLNS 109 Query: 73 LLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPIT 124 ++ S+ QAS +G+ + + +G ++A + G+ + EI + Sbjct: 110 VMTSSQALQASGLVGRKVLIP--TDTGNISAESPTMKGVVSTPDKIPEITVR 159 >gi|224584320|ref|YP_002638118.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224468847|gb|ACN46677.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 232 Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 3/97 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 NT V T S + S Q +FL LL+ Q+K+QDPT P++ +E QLA S + Sbjct: 12 NTGVKTTTGSGSMTGSNAADLQSSFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGI 71 Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 ++N+TL + + ++ QA++ IG + +I Sbjct: 72 EKLNTTLGAISGQIDNSQSLQATTLIGHGVMVPGTTI 108 >gi|144900454|emb|CAM77318.1| Basal-body rod modification protein FlgD [Magnetospirillum gryphiswaldense MSR-1] Length = 226 Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 3/95 (3%) Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65 E + S ++ D FL +L Q+K+QDP PM ++E QL FS +EQ + Sbjct: 7 ESTGASNNAANSGTRLAENFDTFLTMLTVQLKNQDPLSPMDSTEFTNQLVQFSAVEQQIA 66 Query: 66 MNSTLQELL---KSNNLAQASSYIGKNITNADGSI 97 N L+ L+ ++N AQA +YIG I A ++ Sbjct: 67 SNKNLENLISVTQTNTKAQAIAYIGHTIEVAASAV 101 >gi|284925345|gb|ADC27697.1| flagellar basal body rod modification protein [Campylobacter jejuni subsp. jejuni IA3902] Length = 294 Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 10/92 (10%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 S L +DAFLKLL+ +++HQDPT+PM + + + Q + S +E N+T+Q+++++ Sbjct: 40 SNPNAALDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVET 99 Query: 77 NN----------LAQASSYIGKNITNADGSIS 98 A IGK T +D I Sbjct: 100 MQKLSDSFSTSMSTSALGAIGKMATVSDNKIK 131 >gi|88704307|ref|ZP_01102021.1| flagellar basal-body rod modification protein FlgD [Congregibacter litoralis KT71] gi|88701358|gb|EAQ98463.1| flagellar basal-body rod modification protein FlgD [Congregibacter litoralis KT71] Length = 232 Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 5/100 (5%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 T + S + + FL L++ ++++QDPT P S+ + QLA F + ++N+ Sbjct: 14 STPLGNEAANSIDEMDAEDFLALMVAELENQDPTNPNSNSDMMGQLAQFGTVSGIDELNA 73 Query: 69 T---LQELLKSNNLAQASSYIGKNITNAD--GSISGVVNA 103 + L L QA+S +G+++ G ++G NA Sbjct: 74 SFGGLSSALTGGQALQAASLVGRSVMTDSNLGQLTGAANA 113 >gi|85712253|ref|ZP_01043304.1| flagellar basal body rod modification protein [Idiomarina baltica OS145] gi|85693880|gb|EAQ31827.1| flagellar basal body rod modification protein [Idiomarina baltica OS145] Length = 227 Score = 78.8 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 33/130 (25%), Positives = 65/130 (50%), Gaps = 13/130 (10%) Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72 E + ++ L Q+ F KLL Q+ QDPT+P+ + ++Q+ FS E Q++S + Sbjct: 22 EAADPSEQQKLEQEDFFKLLTEQLNMQDPTKPVDNDQMISQMTSFSMAEGISQLSSQFTQ 81 Query: 73 L---LKSNNLAQASSYIGKNI--------TNADGSISGVVNAIQVSSTGLTAITVDNTEI 121 + SN QAS+ +G+++ + G+ +G + A++ S G T +T+ + Sbjct: 82 FTQNMSSNQALQASTMVGRDVLVPSNKTFVESGGTATGAI-ALEQSGYG-TKVTIKDKVG 139 Query: 122 PITTGIRISN 131 + I + + Sbjct: 140 QVVDVIDLGD 149 >gi|218549197|ref|YP_002382988.1| flagellar basal body rod modification protein [Escherichia fergusonii ATCC 35469] gi|218356738|emb|CAQ89366.1| flagellar hook assembly protein [Escherichia fergusonii ATCC 35469] Length = 231 Score = 78.8 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 32/97 (32%), Positives = 51/97 (52%), Gaps = 4/97 (4%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 N V+ T + L Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + Sbjct: 12 NNGVSNTSNNSLTGGNAADL-QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGI 70 Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 ++N+TL + + ++ QASS IG + +I Sbjct: 71 EKLNTTLGAISGQIDNSQSLQASSLIGHGVMIPGTTI 107 >gi|187926955|ref|YP_001893300.1| flagellar hook capping protein [Ralstonia pickettii 12J] gi|241665284|ref|YP_002983643.1| flagellar hook capping protein [Ralstonia pickettii 12D] gi|187728709|gb|ACD29873.1| flagellar hook capping protein [Ralstonia pickettii 12J] gi|240867311|gb|ACS64971.1| flagellar hook capping protein [Ralstonia pickettii 12D] Length = 215 Score = 78.8 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 28/94 (29%), Positives = 50/94 (53%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 T T + S + T Q+ F++LL+ Q+++QDP PM S+ +QLA + + Sbjct: 7 TSTPSTNTSNNLSITSGTDLQNTFMQLLVAQLQNQDPLNPMDNSQMTSQLAQINTVNGIQ 66 Query: 65 QMNSTLQELLKSNNLAQASSYIGKNITNADGSIS 98 Q+N+T+ + N QASS IG+ + +++ Sbjct: 67 QLNTTMSSMATQNAATQASSLIGRTVQVPSSTLT 100 >gi|77359721|ref|YP_339296.1| flagellar basal body rod modification protein [Pseudoalteromonas haloplanktis TAC125] gi|76874632|emb|CAI85853.1| flagellar biosynthesis; initiation of hook assembly [Pseudoalteromonas haloplanktis TAC125] Length = 225 Score = 78.8 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 3/90 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 +++ + L Q+ F LL Q+ QDP++P + +AQ+ F+ E +NS Sbjct: 19 EKQAASKDKSDALTQEDFFSLLTQQLSFQDPSKPADNDQMIAQMTSFTMAEGISNLNSNF 78 Query: 71 QEL---LKSNNLAQASSYIGKNITNADGSI 97 + L + SN+ QAS+ +GK ++ Sbjct: 79 EALAASMTSNSALQASTLVGKQALLESDTL 108 >gi|163733168|ref|ZP_02140612.1| flagellar basal-body rod modification protein, putative [Roseobacter litoralis Och 149] gi|161393703|gb|EDQ18028.1| flagellar basal-body rod modification protein, putative [Roseobacter litoralis Och 149] Length = 226 Score = 78.8 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 35/89 (39%), Positives = 49/89 (55%), Gaps = 6/89 (6%) Query: 7 VNPTQQEFSKSKSKK---TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 + PT Q + S + + FLK+L Q + QDP EP+ +SE AQLA FS +EQ Sbjct: 9 IQPTTQLGTAQASNSAALSSDFETFLKMLTAQARFQDPLEPIDSSEYAAQLAQFSMVEQQ 68 Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKN 89 V N L EL L SN++ Q +++IG Sbjct: 69 VLSNDLLTELGAQLGSNSIGQMAAWIGME 97 >gi|33592478|ref|NP_880122.1| flagellar basal body rod modification protein [Bordetella pertussis Tohama I] gi|33572124|emb|CAE41666.1| basal-body rod modification protein FlgD [Bordetella pertussis Tohama I] gi|332381895|gb|AEE66742.1| flagellar basal body rod modification protein [Bordetella pertussis CS] Length = 234 Score = 78.8 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 3/106 (2%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74 + S S QD FL LL+TQ+++QDP PM+ +E +QLA S +E + +T+ + Sbjct: 18 AGSNSAAQGIQDQFLTLLVTQLRNQDPLNPMENAELTSQLAQISTVEGINNLKNTMLAIS 77 Query: 75 KSNNLAQ---ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVD 117 +++Q A S IGK + +S + + G T +D Sbjct: 78 GQIDVSQSMDAVSMIGKGVLMPGDKVSLGADPNDPAQRGATPFGID 123 >gi|22126391|ref|NP_669814.1| flagellar basal body rod modification protein [Yersinia pestis KIM 10] gi|45441410|ref|NP_992949.1| flagellar basal body rod modification protein [Yersinia pestis biovar Microtus str. 91001] gi|108807172|ref|YP_651088.1| flagellar basal body rod modification protein [Yersinia pestis Antiqua] gi|108812484|ref|YP_648251.1| flagellar basal body rod modification protein [Yersinia pestis Nepal516] gi|145598611|ref|YP_001162687.1| flagellar basal body rod modification protein [Yersinia pestis Pestoides F] gi|149366252|ref|ZP_01888287.1| basal-body rod modification protein FlgD [Yersinia pestis CA88-4125] gi|165925901|ref|ZP_02221733.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Orientalis str. F1991016] gi|165938661|ref|ZP_02227216.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Orientalis str. IP275] gi|166010833|ref|ZP_02231731.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Antiqua str. E1979001] gi|166210989|ref|ZP_02237024.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Antiqua str. B42003004] gi|167401100|ref|ZP_02306603.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420264|ref|ZP_02312017.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425865|ref|ZP_02317618.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167469719|ref|ZP_02334423.1| flagellar basal body rod modification protein [Yersinia pestis FV-1] gi|218928921|ref|YP_002346796.1| flagellar basal body rod modification protein [Yersinia pestis CO92] gi|229896241|ref|ZP_04511411.1| basal-body rod modification protein FlgD [Yersinia pestis Pestoides A] gi|229897176|ref|ZP_04512332.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Orientalis str. PEXU2] gi|229897902|ref|ZP_04513053.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Orientalis str. India 195] gi|229902866|ref|ZP_04517983.1| basal-body rod modification protein FlgD [Yersinia pestis Nepal516] gi|270486646|ref|ZP_06203720.1| flagellar hook capping protein [Yersinia pestis KIM D27] gi|294504031|ref|YP_003568093.1| basal-body rod modification protein FlgD [Yersinia pestis Z176003] gi|21959378|gb|AAM86065.1|AE013854_1 basal-body rod modification protein [Yersinia pestis KIM 10] gi|45436271|gb|AAS61826.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Microtus str. 91001] gi|108776132|gb|ABG18651.1| basal-body rod modification protein FlgD [Yersinia pestis Nepal516] gi|108779085|gb|ABG13143.1| basal-body rod modification protein FlgD [Yersinia pestis Antiqua] gi|115347532|emb|CAL20441.1| basal-body rod modification protein FlgD [Yersinia pestis CO92] gi|145210307|gb|ABP39714.1| basal-body rod modification protein FlgD [Yersinia pestis Pestoides F] gi|149292665|gb|EDM42739.1| basal-body rod modification protein FlgD [Yersinia pestis CA88-4125] gi|165913275|gb|EDR31897.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Orientalis str. IP275] gi|165922105|gb|EDR39282.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Orientalis str. F1991016] gi|165990177|gb|EDR42478.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Antiqua str. E1979001] gi|166208169|gb|EDR52649.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Antiqua str. B42003004] gi|166961959|gb|EDR57980.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049489|gb|EDR60897.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055264|gb|EDR65061.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229680313|gb|EEO76412.1| basal-body rod modification protein FlgD [Yersinia pestis Nepal516] gi|229688943|gb|EEO81008.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Orientalis str. India 195] gi|229693513|gb|EEO83562.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701164|gb|EEO89193.1| basal-body rod modification protein FlgD [Yersinia pestis Pestoides A] gi|262361783|gb|ACY58504.1| basal-body rod modification protein FlgD [Yersinia pestis D106004] gi|262366081|gb|ACY62638.1| basal-body rod modification protein FlgD [Yersinia pestis D182038] gi|270335150|gb|EFA45927.1| flagellar hook capping protein [Yersinia pestis KIM D27] gi|294354490|gb|ADE64831.1| basal-body rod modification protein FlgD [Yersinia pestis Z176003] gi|320015468|gb|ADV99039.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 225 Score = 78.8 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 8/87 (9%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q+ FL LL+ Q+K+QDPT PM+ +E QLA + + ++N+TL + + S+ Sbjct: 29 QNRFLTLLVAQLKNQDPTNPMENNELTTQLAQINTVSGIEKLNTTLGAITGQIDSSQSLY 88 Query: 82 ASSYIGKNITNAD-----GSISGVVNA 103 A+S IG+ + GS G V+ Sbjct: 89 ATSLIGRGVMVPGTNIFTGSTDGTVST 115 >gi|315497295|ref|YP_004086099.1| flagellar hook capping protein [Asticcacaulis excentricus CB 48] gi|315415307|gb|ADU11948.1| flagellar hook capping protein [Asticcacaulis excentricus CB 48] Length = 219 Score = 78.8 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 28/76 (36%), Positives = 46/76 (60%), Gaps = 2/76 (2%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN--NLAQA 82 + FL LL Q+K+QDP PM ++E +QL +S +EQ ++ N L L+ + +L+ A Sbjct: 28 YETFLSLLTAQLKNQDPLSPMDSTEWTSQLVQYSSVEQQIKTNDYLSTLVAQSGGSLSSA 87 Query: 83 SSYIGKNITNADGSIS 98 +YIGK+IT + + Sbjct: 88 VNYIGKSITADTNTTT 103 >gi|162419120|ref|YP_001606472.1| flagellar basal body rod modification protein [Yersinia pestis Angola] gi|162351935|gb|ABX85883.1| basal-body rod modification protein FlgD [Yersinia pestis Angola] Length = 225 Score = 78.8 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 8/87 (9%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q+ FL LL+ Q+K+QDPT PM+ +E QLA + + ++N+TL + + S+ Sbjct: 29 QNRFLTLLVAQLKNQDPTNPMENNELTTQLAQINTVSGIEKLNTTLGAITGQIDSSQSLY 88 Query: 82 ASSYIGKNITNAD-----GSISGVVNA 103 A+S IG+ + GS G V+ Sbjct: 89 ATSLIGRGVMVPGTNIFTGSTDGTVST 115 >gi|62179693|ref|YP_216110.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62127326|gb|AAX65029.1| flagellar biosynthesis, initiation of hook assembly [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322714163|gb|EFZ05734.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 232 Score = 78.8 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 3/97 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 NT V T S + S Q +FL LL+ Q+K+QDPT P++ +E QLA S + Sbjct: 12 NTGVKTTTGSGSMTGSNAADLQSSFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGI 71 Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 ++N+TL + + ++ QA++ IG + +I Sbjct: 72 EKLNTTLGAISGQIDNSQSLQATTLIGHGVMVPGTTI 108 >gi|92114099|ref|YP_574027.1| flagellar basal body rod modification protein [Chromohalobacter salexigens DSM 3043] gi|91797189|gb|ABE59328.1| flagellar hook capping protein [Chromohalobacter salexigens DSM 3043] Length = 235 Score = 78.8 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 3/100 (3%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 + N + + + + F+ LLITQ+++QDPT+PM S+ AQLA + + Sbjct: 14 INSTPNANASNETRTTGAESSEDLNNRFMTLLITQLQNQDPTKPMDNSDMTAQLAQINTV 73 Query: 61 EQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 ++N +L ++ + + QASS IG+ + ++ Sbjct: 74 SGIQELNDSLGDINEQIDAGKTLQASSLIGQGVMVPGSTV 113 >gi|294140183|ref|YP_003556161.1| basal-body rod modification protein FlgD [Shewanella violacea DSS12] gi|293326652|dbj|BAJ01383.1| basal-body rod modification protein FlgD [Shewanella violacea DSS12] Length = 235 Score = 78.8 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 3/84 (3%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS---TLQE 72 + + L Q+ F LL Q+ QDP +P+ + +AQ+A FS ++ +N L Sbjct: 29 PEANSQGLSQEDFFSLLSQQLSMQDPFKPVDNDQMIAQMAAFSTVDGISNLNDEIINLNT 88 Query: 73 LLKSNNLAQASSYIGKNITNADGS 96 ++ S+ QAS +G+ + + Sbjct: 89 VMTSSQALQASGLVGQKVLIPSDT 112 >gi|16760052|ref|NP_455669.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16764532|ref|NP_460147.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29142177|ref|NP_805519.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56413837|ref|YP_150912.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161614601|ref|YP_001588566.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167553036|ref|ZP_02346786.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168234102|ref|ZP_02659160.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168237258|ref|ZP_02662316.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168244775|ref|ZP_02669707.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168264031|ref|ZP_02686004.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168467128|ref|ZP_02700970.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168822619|ref|ZP_02834619.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194446242|ref|YP_002040430.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194450049|ref|YP_002045175.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194471560|ref|ZP_03077544.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194734983|ref|YP_002114175.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197249054|ref|YP_002146867.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197264764|ref|ZP_03164838.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197362760|ref|YP_002142397.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198243981|ref|YP_002215961.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200391018|ref|ZP_03217629.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204930747|ref|ZP_03221620.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205353086|ref|YP_002226887.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207857316|ref|YP_002243967.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213026535|ref|ZP_03340982.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213161845|ref|ZP_03347555.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213419884|ref|ZP_03352950.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213424679|ref|ZP_03357444.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213582036|ref|ZP_03363862.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213648925|ref|ZP_03378978.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213865506|ref|ZP_03387625.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289828581|ref|ZP_06546406.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|60392285|sp|P0A1I9|FLGD_SALTY RecName: Full=Basal-body rod modification protein flgD gi|60392286|sp|P0A1J0|FLGD_SALTI RecName: Full=Basal-body rod modification protein flgD gi|25355188|pir||AI0639 flagellar hook formation protein FlgD [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|534883|dbj|BAA04982.1| flagella [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16419693|gb|AAL20106.1| flagellar biosynthesis protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16502346|emb|CAD08300.1| flagellar hook formation protein FlgD [Salmonella enterica subsp. enterica serovar Typhi] gi|29137807|gb|AAO69368.1| flagellar hook formation protein FlgD [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56128094|gb|AAV77600.1| flagellar hook formation protein FlgD [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161363965|gb|ABX67733.1| hypothetical protein SPAB_02351 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194404905|gb|ACF65127.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194408353|gb|ACF68572.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194457924|gb|EDX46763.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194710485|gb|ACF89706.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195630307|gb|EDX48933.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197094237|emb|CAR59742.1| flagellar hook formation protein FlgD [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197212757|gb|ACH50154.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197243019|gb|EDY25639.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197289802|gb|EDY29163.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197938497|gb|ACH75830.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199603463|gb|EDZ02009.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204320206|gb|EDZ05410.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205272867|emb|CAR37796.1| flagellar hook formation protein FlgD [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205322429|gb|EDZ10268.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205331933|gb|EDZ18697.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205336417|gb|EDZ23181.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205341045|gb|EDZ27809.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205347362|gb|EDZ33993.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206709119|emb|CAR33452.1| flagellar hook formation protein FlgD [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261246387|emb|CBG24196.1| flagellar hook formation protein FlgD [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992950|gb|ACY87835.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157717|emb|CBW17209.1| flagellar hook formation protein FlgD [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912163|dbj|BAJ36137.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320086384|emb|CBY96157.1| Basal-body rod modification protein flgD [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321223794|gb|EFX48857.1| Flagellar basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322616546|gb|EFY13455.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620513|gb|EFY17377.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622507|gb|EFY19352.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629658|gb|EFY26433.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632622|gb|EFY29368.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636883|gb|EFY33586.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641579|gb|EFY38217.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644069|gb|EFY40615.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650031|gb|EFY46449.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653956|gb|EFY50279.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658488|gb|EFY54750.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663346|gb|EFY59548.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322670080|gb|EFY66220.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674856|gb|EFY70947.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676674|gb|EFY72741.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682596|gb|EFY78615.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686651|gb|EFY82630.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323129446|gb|ADX16876.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323195765|gb|EFZ80941.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198343|gb|EFZ83447.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203173|gb|EFZ88203.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209176|gb|EFZ94113.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323209680|gb|EFZ94609.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217864|gb|EGA02579.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222152|gb|EGA06536.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224924|gb|EGA09182.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229666|gb|EGA13789.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323232891|gb|EGA16987.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240626|gb|EGA24668.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242940|gb|EGA26961.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323250257|gb|EGA34146.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252632|gb|EGA36470.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258840|gb|EGA42493.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261029|gb|EGA44622.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266938|gb|EGA50423.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269979|gb|EGA53428.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326623709|gb|EGE30054.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326628166|gb|EGE34509.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 232 Score = 78.8 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 3/97 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 NT V T S + S Q +FL LL+ Q+K+QDPT P++ +E QLA S + Sbjct: 12 NTGVKTTTGSGSMTGSNAADLQSSFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGI 71 Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 ++N+TL + + ++ QA++ IG + +I Sbjct: 72 EKLNTTLGAISGQIDNSQSLQATTLIGHGVMVPGTTI 108 >gi|258592497|emb|CBE68806.1| putative basal-body rod modification protein flgD [NC10 bacterium 'Dutch sediment'] Length = 234 Score = 78.8 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 40/112 (35%), Positives = 64/112 (57%), Gaps = 16/112 (14%) Query: 1 MEINTEVNPTQQE------FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQL 54 MEI T Q + S + LG+DAFLKLL+ Q+++Q+P P++ ++ +AQ Sbjct: 1 MEITNGSTTTVQSPQGAGAATSSALDRGLGKDAFLKLLVAQLRNQNPLNPLQGTDFIAQT 60 Query: 55 AVFSQMEQSVQMNSTLQELLKSNNLAQ---------ASSYIGKNITNADGSI 97 A F+ +EQ Q+N+++ +L S+ ASSYIGK +T A+G+I Sbjct: 61 AQFTSLEQLQQINASIAQLSASSAATSGSNSLDAVLASSYIGKVVT-ANGTI 111 >gi|315637838|ref|ZP_07893028.1| flagellar hook assembly protein [Campylobacter upsaliensis JV21] gi|315482079|gb|EFU72693.1| flagellar hook assembly protein [Campylobacter upsaliensis JV21] Length = 285 Score = 78.8 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 17/111 (15%) Query: 5 TEVNPTQQEFSKSKSKKT-------LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVF 57 T+ + T Q S + L +DAFLKLL+ +++HQDPT+PM + + + Q + Sbjct: 16 TKTDNTTQNNGGSLTPNNQGNPGAVLDKDAFLKLLLIEMQHQDPTDPMDSDKMLTQTSQL 75 Query: 58 SQMEQSVQMNSTLQEL----------LKSNNLAQASSYIGKNITNADGSIS 98 + +E N+T+Q++ + ++ A IGK T AD I Sbjct: 76 AALEMQQNTNNTMQQMVAQMEKLSNAMGTSQSIGALGAIGKMATIADNKIK 126 >gi|145298490|ref|YP_001141331.1| flagellar hook capping protein FlgD [Aeromonas salmonicida subsp. salmonicida A449] gi|142851262|gb|ABO89583.1| flagellar hook capping protein FlgD [Aeromonas salmonicida subsp. salmonicida A449] Length = 242 Score = 78.8 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 11/114 (9%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL---QELL 74 KK L Q +FLKLL Q+ +QDP +P+ ++ ++Q+ S E +++ + L+ Sbjct: 23 APKKELDQASFLKLLTMQLSYQDPFKPVDNAQMLSQMTSMSTSEGINSLSTQMGNLNTLM 82 Query: 75 KSNNLAQASSYIGKNI--------TNADGSISGVVNAIQVSSTGLTAITVDNTE 120 S+ QAS+ +G+N+ +GSI GVV + ITV++ + Sbjct: 83 TSSQALQASALVGQNVLLQSNVGFLENEGSIGGVVAVGVENKYTSVKITVEDEK 136 >gi|310659038|ref|YP_003936759.1| flagellar hook capping protein [Clostridium sticklandii DSM 519] gi|308825816|emb|CBH21854.1| Flagellar hook capping protein [Clostridium sticklandii] Length = 128 Score = 78.8 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 27/75 (36%), Positives = 41/75 (54%) Query: 7 VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66 N ++ + LG+DAFL+LL TQ+ HQDP P E ++Q+A FS +EQ + Sbjct: 15 TNTGTEKNYTRQVNSELGKDAFLRLLTTQLSHQDPLNPTDDKEFLSQMASFSSLEQMQNL 74 Query: 67 NSTLQELLKSNNLAQ 81 N++ L K+ Q Sbjct: 75 NTSFAGLDKTMQDTQ 89 >gi|114799290|ref|YP_758991.1| putative basal-body rod modification protein FlgD [Hyphomonas neptunium ATCC 15444] gi|114739464|gb|ABI77589.1| putative basal-body rod modification protein FlgD [Hyphomonas neptunium ATCC 15444] Length = 216 Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 27/73 (36%), Positives = 45/73 (61%), Gaps = 3/73 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ---ELLKSNNLAQ 81 ++F+KLL Q+++QDP PM +++ V QLA FS +EQ V N+ L ++ N Sbjct: 27 YNSFIKLLTAQVRNQDPMSPMDSTQFVEQLATFSSLEQLVNSNTALSSIASMIGDLNGLM 86 Query: 82 ASSYIGKNITNAD 94 AS ++G+++T A Sbjct: 87 ASQWLGEDVTFAS 99 >gi|209964700|ref|YP_002297615.1| basal-body rod modification protein FlgD, putative [Rhodospirillum centenum SW] gi|209958166|gb|ACI98802.1| basal-body rod modification protein FlgD, putative [Rhodospirillum centenum SW] Length = 309 Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 51/119 (42%), Gaps = 16/119 (13%) Query: 24 GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQAS 83 + FL+LL Q+K+QDP +P + SE QL FSQ+EQ + NS L L QA+ Sbjct: 33 NYETFLQLLTAQLKNQDPLQPQETSEFTNQLVQFSQVEQQISTNSKLDNLTGVVQQGQAT 92 Query: 84 ---SYIGKNI-------------TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTG 126 YIGK + T I G V + + + V+ + + G Sbjct: 93 VALQYIGKTVELEPSGIPLLPGGTTVSYDIDGEVRSATLVISDKDGNIVNTQSVQVRPG 151 >gi|91792663|ref|YP_562314.1| flagellar basal body rod modification protein [Shewanella denitrificans OS217] gi|91714665|gb|ABE54591.1| flagellar hook capping protein [Shewanella denitrificans OS217] Length = 263 Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 6/119 (5%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 PT+ ++K ++L Q F LL Q+ QDP +P+ + + Q+A FS ++ ++N Sbjct: 51 PTESAIPEAK-DQSLTQKDFFALLSQQLSMQDPFKPVDNDQMIQQMASFSTVDGITKLNE 109 Query: 69 ---TLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPIT 124 L + S+ QAS +G+ + +G +++ S G+ + ++I + Sbjct: 110 EILNLTSVTSSSQALQASGLVGRKVLIPSD--TGYLSSESPSINGVISTPEKISDITVR 166 >gi|120597304|ref|YP_961878.1| flagellar hook capping protein [Shewanella sp. W3-18-1] gi|146294551|ref|YP_001184975.1| flagellar hook capping protein [Shewanella putrefaciens CN-32] gi|120557397|gb|ABM23324.1| flagellar hook capping protein [Shewanella sp. W3-18-1] gi|145566241|gb|ABP77176.1| flagellar hook capping protein [Shewanella putrefaciens CN-32] Length = 220 Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 3/89 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 N V + + ++ F+ L+I QIK+QDPT+P+ ++E ++QLA FSQ+E Sbjct: 8 NNPVQNPAGALAAPGNDAASLKNEFMTLMIAQIKNQDPTKPLNSAEYISQLAQFSQVESL 67 Query: 64 VQMNSTLQE---LLKSNNLAQASSYIGKN 89 M ++++ + Q++S IGKN Sbjct: 68 EGMRKNQSNQMIMMENLGIVQSASLIGKN 96 >gi|149911703|ref|ZP_01900311.1| flagellar basal body rod modification protein [Moritella sp. PE36] gi|149805233|gb|EDM65250.1| flagellar basal body rod modification protein [Moritella sp. PE36] Length = 237 Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 11/101 (10%) Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72 E + S+K LGQ+ F LL ++ QDP +P++ SE VAQ+A F+ + M S ++ Sbjct: 26 EQAAESSRKELGQEDFFSLLTQELAFQDPFKPVENSEMVAQMASFTTADGIANMGSKFEQ 85 Query: 73 L---LKSNNLAQASSYIGKNI--------TNADGSISGVVN 102 L + SN QASS +G + +A S+SG + Sbjct: 86 LTTIMSSNQALQASSLVGTKVLAPASTAFLSAGESVSGRIE 126 >gi|33596139|ref|NP_883782.1| flagellar basal body rod modification protein [Bordetella parapertussis 12822] gi|33573142|emb|CAE36789.1| basal-body rod modification protein FlgD [Bordetella parapertussis] Length = 234 Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 3/106 (2%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74 + S S QD FL LL+TQ+++QDP PM+ +E +QLA S +E + +T+ + Sbjct: 18 AGSNSAAQGIQDQFLTLLVTQLRNQDPLNPMENAELTSQLAQISTVEGINNLKNTMLAIS 77 Query: 75 KSNNLAQ---ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVD 117 +++Q A S IGK + +S + + G T +D Sbjct: 78 GQIDVSQSMDAVSMIGKGVLMPGDKVSLGTDPNDPAQRGATPFGID 123 >gi|89068735|ref|ZP_01156121.1| flagellar hook assembly protein FlgD [Oceanicola granulosus HTCC2516] gi|89045698|gb|EAR51760.1| flagellar hook assembly protein FlgD [Oceanicola granulosus HTCC2516] Length = 222 Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 34/85 (40%), Positives = 45/85 (52%), Gaps = 3/85 (3%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 S + FLK+L Q+ +QDP PM +S V QLA SQ+EQ+VQ N L+ELL Sbjct: 20 SNAAMDSNYQNFLKMLTAQVTNQDPLAPMDSSTFVTQLAQLSQVEQTVQSNGHLRELLAG 79 Query: 77 NNLAQASS---YIGKNITNADGSIS 98 + + IGK +T A IS Sbjct: 80 VQSFGSMAEVQLIGKPVTYASDRIS 104 >gi|121596116|ref|YP_988012.1| flagellar hook capping protein [Acidovorax sp. JS42] gi|120608196|gb|ABM43936.1| flagellar hook capping protein [Acidovorax sp. JS42] Length = 216 Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 3/88 (3%) Query: 14 FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73 + + + QD FLKLL+ Q+ +QDP P+ ++ Q+A + + +N T+Q + Sbjct: 17 SANATNDPAAMQDRFLKLLVAQLNNQDPMNPLDNAQMTTQMAQINTVTGIQTLNLTMQTM 76 Query: 74 ---LKSNNLAQASSYIGKNITNADGSIS 98 + Q S IG+++ +S Sbjct: 77 AEEFSTMQQIQGISLIGRSVLTEGDRLS 104 >gi|167994040|ref|ZP_02575132.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205328048|gb|EDZ14812.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|332988067|gb|AEF07050.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 232 Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 3/97 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 NT V T S + S Q +FL LL+ Q+K+QDPT P++ +E QLA S + Sbjct: 12 NTGVKTTTDSGSMTGSNAADLQSSFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGI 71 Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 ++N+TL + + ++ QA++ IG + +I Sbjct: 72 EKLNTTLGAISGQIDNSQSLQATTLIGHGVMVPGTTI 108 >gi|154174409|ref|YP_001407312.1| flagellar basal body rod modification protein [Campylobacter curvus 525.92] gi|112803496|gb|EAU00840.1| flagellar hook assembly protein [Campylobacter curvus 525.92] Length = 235 Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 30/98 (30%), Positives = 57/98 (58%), Gaps = 3/98 (3%) Query: 14 FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73 + + L +DAF+KLL+T++++QDPT PM + + Q + + +E NST+++L Sbjct: 30 TTGANPNSQLDKDAFMKLLLTELQYQDPTSPMDTEKMLTQTSQLAALEMQENTNSTMRQL 89 Query: 74 ---LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSS 108 L+SN A A S +GK ++ +++ + ++SS Sbjct: 90 VAQLQSNANAYAISALGKMVSTGSNAVNITDDTKEISS 127 >gi|117926845|ref|YP_867462.1| flagellar hook capping protein [Magnetococcus sp. MC-1] gi|117610601|gb|ABK46056.1| flagellar hook capping protein [Magnetococcus sp. MC-1] Length = 224 Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 53/97 (54%), Gaps = 5/97 (5%) Query: 7 VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66 +P +++ + + Q FL++L Q++HQDP EPM+ +E +QLA F + Q Sbjct: 13 YDPNASKYTSTSTDAKELQSDFLRMLTAQLEHQDPLEPMENTEFTSQLATFEGLSQQQNS 72 Query: 67 NSTLQELLK-----SNNLAQASSYIGKNITNADGSIS 98 LQ+L++ ++ + QA +YIG+ + +++ Sbjct: 73 TQLLQQLVELMSGGTDQVGQAVAYIGREVLVEGNTLT 109 >gi|24374759|ref|NP_718802.1| flagellar basal body rod modification protein [Shewanella oneidensis MR-1] gi|24349425|gb|AAN56246.1|AE015762_3 basal-body rod modification protein FlgD [Shewanella oneidensis MR-1] Length = 253 Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 9/124 (7%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS-- 68 + L Q+ F LL Q+ QDP +P+ + +AQ+A FS ++ ++N Sbjct: 42 SNSAVPEAKSQQLTQEDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGISKLNDQI 101 Query: 69 -TLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGI 127 L ++ S+ QAS +G+ + + I S GL + + +IP+ I Sbjct: 102 VNLNSVMTSSQALQASGLVGRKVLLPTDT-----GYISAESPGLNGVISTSEKIPVIN-I 155 Query: 128 RISN 131 RI + Sbjct: 156 RIED 159 >gi|254294562|ref|YP_003060585.1| flagellar hook capping protein [Hirschia baltica ATCC 49814] gi|254043093|gb|ACT59888.1| flagellar hook capping protein [Hirschia baltica ATCC 49814] Length = 222 Score = 78.0 bits (191), Expect = 3e-13, Method: Composition-based stats. Identities = 32/89 (35%), Positives = 52/89 (58%), Gaps = 3/89 (3%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 + + + ++S+S D FL LL Q+++QDP EP ++E QL FS +EQ + Sbjct: 9 NQSSGSTSNSAQSQSALASDFDTFLTLLTAQLQNQDPLEPTDSTEFTNQLVQFSGVEQQI 68 Query: 65 QMNSTLQELLKSNNLAQA---SSYIGKNI 90 Q N L++L+ SNN A SSY+G+++ Sbjct: 69 QTNDALEQLIASNNSATGAAMSSYLGQSV 97 >gi|157165774|ref|YP_001466012.1| flagellar basal body rod modification protein [Campylobacter concisus 13826] gi|112801160|gb|EAT98504.1| flagellar hook assembly protein [Campylobacter concisus 13826] Length = 235 Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 3/87 (3%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL- 73 + + L +DAF+KLL+T+++HQDPT PM + + Q + + +E N ++EL Sbjct: 31 TGTNPNSQLDKDAFMKLLLTELQHQDPTSPMDTEKMLTQTSQLASVEMQENTNKAMKELV 90 Query: 74 --LKSNNLAQASSYIGKNITNADGSIS 98 LKSN A A S +GK ++ +++ Sbjct: 91 NQLKSNANAYAISALGKMVSTGSNAVT 117 >gi|258404709|ref|YP_003197451.1| flagellar hook capping protein [Desulfohalobium retbaense DSM 5692] gi|257796936|gb|ACV67873.1| flagellar hook capping protein [Desulfohalobium retbaense DSM 5692] Length = 227 Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 3/103 (2%) Query: 7 VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66 Q +LG+ FL LL+TQ+++QDP P +E AQLA FS +EQ + Sbjct: 13 AQSVQSPERTGSQDDSLGKMDFLNLLVTQLENQDPMNPSDPTEMTAQLAQFSSLEQLTNI 72 Query: 67 NSTLQ---ELLKSNNLAQASSYIGKNITNADGSISGVVNAIQV 106 + +++ + + A S +G+N+ + + +Q+ Sbjct: 73 SESMEGLDAMKTAYEQNAALSMLGRNVQLEGNTFTFQNEPVQL 115 >gi|88811800|ref|ZP_01127054.1| flagellar basal body rod modification protein [Nitrococcus mobilis Nb-231] gi|88791191|gb|EAR22304.1| flagellar basal body rod modification protein [Nitrococcus mobilis Nb-231] Length = 221 Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 23/79 (29%), Positives = 45/79 (56%), Gaps = 3/79 (3%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL- 73 + + + QD FLK+++ Q+++Q+P +PM E + Q+A F+ Q+ S+ Q Sbjct: 18 APKPATNEVSQDDFLKMMVAQLQNQNPLKPMSNGEFLTQIAQFTSASGIEQLQSSFQAFQ 77 Query: 74 --LKSNNLAQASSYIGKNI 90 ++SN QA+S +G+ + Sbjct: 78 TNMQSNLALQAASLVGRQV 96 >gi|222112271|ref|YP_002554535.1| flagellar hook capping protein [Acidovorax ebreus TPSY] gi|221731715|gb|ACM34535.1| flagellar hook capping protein [Acidovorax ebreus TPSY] Length = 216 Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 3/88 (3%) Query: 14 FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73 + + + QD FLKLL+ Q+ +QDP P+ ++ Q+A + + +N T+Q + Sbjct: 17 SANATNDPAAMQDRFLKLLVAQLNNQDPMNPLDNAQMTTQMAQINTVTGIQTLNLTMQTM 76 Query: 74 ---LKSNNLAQASSYIGKNITNADGSIS 98 + Q S IG+++ +S Sbjct: 77 AEEFSTMQQIQGISLIGRSVLTEGDRLS 104 >gi|197120192|ref|YP_002140619.1| flagellar hook capping protein FlgD [Geobacter bemidjiensis Bem] gi|197089552|gb|ACH40823.1| flagellar hook capping protein FlgD [Geobacter bemidjiensis Bem] Length = 221 Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 3/84 (3%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL--- 74 K + +D FLKL +TQ+++QDP P ++ ++QLA +Q+EQ+ NS LQ +L Sbjct: 19 KKSTGMNKDDFLKLFVTQLQNQDPLNPQDGTQFISQLAQLTQVEQAYNTNSNLQNMLNQG 78 Query: 75 KSNNLAQASSYIGKNITNADGSIS 98 ++ A + IGK + + Sbjct: 79 SNSATLAAVTLIGKQVEAQGNQLE 102 >gi|238796903|ref|ZP_04640407.1| Flagellar hook capping protein [Yersinia mollaretii ATCC 43969] gi|238719163|gb|EEQ10975.1| Flagellar hook capping protein [Yersinia mollaretii ATCC 43969] Length = 237 Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 48/91 (52%), Gaps = 3/91 (3%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 + N ++ + + S ++F+ LL+ Q+++QDPT PM ++ +QLA FS Sbjct: 6 VMNSNNAAPKDGASNGSNPEDLTNSFMTLLVAQMQNQDPTNPMDNNQLTSQLAQFSTASG 65 Query: 63 SVQMNST---LQELLKSNNLAQASSYIGKNI 90 Q+NST + L+ S A+ ++G+ + Sbjct: 66 VQQLNSTVMAVGSLVTSMQQMNAADWVGRQV 96 >gi|307944134|ref|ZP_07659475.1| flagellar hook capping protein [Roseibium sp. TrichSKD4] gi|307772480|gb|EFO31700.1| flagellar hook capping protein [Roseibium sp. TrichSKD4] Length = 219 Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 30/100 (30%), Positives = 56/100 (56%), Gaps = 3/100 (3%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 ++ + + + + + FL LL TQI++QDP +P+ ++E QL +S +E Sbjct: 3 QVTGATSAASSGTTSASQSLSSNYELFLSLLTTQIQYQDPLDPLDSAEYTKQLVQYSSVE 62 Query: 62 QSVQMNSTLQELLKSNNLAQASS---YIGKNITNADGSIS 98 Q++Q N L +++++ QASS YIG +IT + G+ + Sbjct: 63 QAIQSNQHLAKMVEAMQAGQASSYVNYIGSDITASGGTAT 102 >gi|237731006|ref|ZP_04561487.1| flagellar hook protein FlgE [Citrobacter sp. 30_2] gi|226906545|gb|EEH92463.1| flagellar hook protein FlgE [Citrobacter sp. 30_2] Length = 232 Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 3/97 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 T VN S + S Q +FL LL+ Q+K+QDPT P++ +E QLA S + Sbjct: 12 TTGVNAATGNSSLTGSNAADLQSSFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGI 71 Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 ++N+TL + + ++ QAS+ IG + +I Sbjct: 72 EKLNTTLGSISGQIDNSQSLQASTLIGHGVMIPGTTI 108 >gi|329849963|ref|ZP_08264809.1| basal-body rod modification protein flgD [Asticcacaulis biprosthecum C19] gi|328841874|gb|EGF91444.1| basal-body rod modification protein flgD [Asticcacaulis biprosthecum C19] Length = 218 Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 4/102 (3%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 ++ T TQ +K + FL LL QI++QDP PM ++E QL +S + Sbjct: 2 VDAVTSNATTQTTATKDAKSLAANYETFLSLLTAQIRNQDPLSPMDSTEWTNQLVQYSSV 61 Query: 61 EQSVQMNSTLQELLKS----NNLAQASSYIGKNITNADGSIS 98 EQ ++ N L+++ K+ + + A +YIGK ++ + + Sbjct: 62 EQQLKGNDYLEKISKALDGGDTMNTAVNYIGKTVSAGTATAT 103 >gi|114765240|ref|ZP_01444372.1| Flagellar hook capping protein [Pelagibaca bermudensis HTCC2601] gi|114542375|gb|EAU45403.1| Flagellar hook capping protein [Roseovarius sp. HTCC2601] Length = 223 Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 3/93 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 V S S S+ + ++F+ LL QI++Q+P EPM ++ ++QLA SQ+EQS Sbjct: 8 TGNVTGAGTTASSSMSQLSEDYESFITLLTAQIQNQNPLEPMDSTTFISQLAQLSQVEQS 67 Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNA 93 V +N L+ + L S + + IG+++ Sbjct: 68 VAVNDNLEGISSQLSSMSAIAGLNLIGRSVVAP 100 >gi|161503736|ref|YP_001570848.1| flagellar basal body rod modification protein [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865083|gb|ABX21706.1| hypothetical protein SARI_01821 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 232 Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 3/97 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 NT V T S + + Q +FL LL+ Q+K+QDPT P++ +E QLA S + Sbjct: 12 NTGVKTTTGSGSMTGNNAADLQSSFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGI 71 Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 ++N+TL + + ++ QA++ IG + +I Sbjct: 72 EKLNTTLGAISGQIDNSQSLQATTLIGHGVMVPGTTI 108 >gi|95928664|ref|ZP_01311411.1| flagellar hook capping protein [Desulfuromonas acetoxidans DSM 684] gi|95135454|gb|EAT17106.1| flagellar hook capping protein [Desulfuromonas acetoxidans DSM 684] Length = 220 Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 3/85 (3%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75 + S K LG+ FL+LL+ Q+++QDP EP +E +AQLA FS +EQ N+ L ++ Sbjct: 18 ATASSKALGEADFLELLVAQLENQDPLEPQSNTEFIAQLATFSSLEQQTMTNNKLDSVIS 77 Query: 76 SNNLAQ---ASSYIGKNITNADGSI 97 + Q +GK + + Sbjct: 78 ATADMQQLAGIDMLGKTVVAQSDNF 102 >gi|154252633|ref|YP_001413457.1| flagellar hook capping protein [Parvibaculum lavamentivorans DS-1] gi|154156583|gb|ABS63800.1| flagellar hook capping protein [Parvibaculum lavamentivorans DS-1] Length = 226 Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 3/85 (3%) Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72 + S + + D FLKLL TQ++HQDPT PM + + QL S +EQS+Q N L+ Sbjct: 18 KSSTASAALAGNFDTFLKLLTTQLQHQDPTNPMSSDQFTQQLVQMSGVEQSIQTNRYLET 77 Query: 73 LLKSN---NLAQASSYIGKNITNAD 94 L+ +N N +Q+ S +GK +T + Sbjct: 78 LITANAIQNASQSVSLLGKEVTGSG 102 >gi|254504946|ref|ZP_05117097.1| flagellar hook capping protein, putative [Labrenzia alexandrii DFL-11] gi|222441017|gb|EEE47696.1| flagellar hook capping protein, putative [Labrenzia alexandrii DFL-11] Length = 196 Score = 77.7 bits (190), Expect = 5e-13, Method: Composition-based stats. Identities = 30/76 (39%), Positives = 47/76 (61%), Gaps = 3/76 (3%) Query: 24 GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLA 80 + FL +L TQI++QDP +P+ ++E QL +S +EQS+Q N L+E+ L SN + Sbjct: 4 NYELFLSMLTTQIQNQDPLDPLDSAEYTNQLVQYSNVEQSIQTNKNLEEMISLLSSNQSS 63 Query: 81 QASSYIGKNITNADGS 96 +YIG +T A G+ Sbjct: 64 AYVNYIGTEVTAAGGT 79 >gi|121607562|ref|YP_995369.1| flagellar hook capping protein [Verminephrobacter eiseniae EF01-2] gi|121552202|gb|ABM56351.1| flagellar hook capping protein [Verminephrobacter eiseniae EF01-2] Length = 236 Score = 77.7 bits (190), Expect = 5e-13, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 49/91 (53%), Gaps = 3/91 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 +++ + + QD FLKLL+ Q+ +QDP P+ ++ +Q+A + + Q+N T+ Sbjct: 34 TGAKAQAVTDPSAAQDRFLKLLVAQLNNQDPMNPLDNAQMTSQIAQINTVTGIQQLNQTM 93 Query: 71 QEL---LKSNNLAQASSYIGKNITNADGSIS 98 Q + + + Q ++ +G+++ ++S Sbjct: 94 QRMAAQFDALQVMQGAALVGRSVMTEGSALS 124 >gi|88858144|ref|ZP_01132786.1| flagellar basal body rod modification protein [Pseudoalteromonas tunicata D2] gi|88819761|gb|EAR29574.1| flagellar basal body rod modification protein [Pseudoalteromonas tunicata D2] Length = 240 Score = 77.7 bits (190), Expect = 5e-13, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 3/91 (3%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 +++ + ++ ++ L Q F L+ Q+ QDP P +AQ+ S E Sbjct: 14 VDSLRSTKDEKIQTAEEANELSQSDFFTLMTKQLSMQDPMNPTDNEAMMAQMTNMSIAEG 73 Query: 63 SVQMNSTLQEL---LKSNNLAQASSYIGKNI 90 M + + + SN QASS +G+N+ Sbjct: 74 VSNMATKFDQFAVSMTSNQALQASSLVGRNV 104 >gi|308050025|ref|YP_003913591.1| flagellar hook capping protein [Ferrimonas balearica DSM 9799] gi|307632215|gb|ADN76517.1| flagellar hook capping protein [Ferrimonas balearica DSM 9799] Length = 222 Score = 77.7 bits (190), Expect = 5e-13, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 59/119 (49%), Gaps = 6/119 (5%) Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67 + + + + T ++ FL L++ QI++QDP P+ +E V QLA FSQ+E + Sbjct: 14 TSADPQVTNNPNSSTALKNEFLTLMVAQIQNQDPLNPLDGTEYVTQLAQFSQVESLEHLR 73 Query: 68 STLQE---LLKSNNLAQASSYIGKNITNADGSI---SGVVNAIQVSSTGLTAITVDNTE 120 Q L+++ + ++ IG+ + S+ + VN G+ ++T++ T+ Sbjct: 74 LGQQNQAILMENLQVLGTTNLIGREVLVDADSVELGTDTVNGKIFLENGVESLTLEVTD 132 >gi|50120638|ref|YP_049805.1| flagellar basal body rod modification protein [Pectobacterium atrosepticum SCRI1043] gi|49611164|emb|CAG74610.1| basal-body rod modification protein [Pectobacterium atrosepticum SCRI1043] Length = 224 Score = 77.7 bits (190), Expect = 5e-13, Method: Composition-based stats. Identities = 31/100 (31%), Positives = 52/100 (52%), Gaps = 6/100 (6%) Query: 4 NTEVNPTQQEFSKS---KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 + + TQ S + K+ Q+ FL LL+ Q+K+QDPT PM + V+QLA + + Sbjct: 8 TSSASSTQGLSSTTAVEKNSSADLQNQFLTLLVAQLKNQDPTNPMSNDQLVSQLAQLNTV 67 Query: 61 EQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 ++N+TL + + +N QAS+ IG ++ I Sbjct: 68 SGIEKLNTTLGSISGQINNNQSMQASTLIGHSVMIPGKDI 107 >gi|83955142|ref|ZP_00963798.1| flagellar hook assembly protein FlgD [Sulfitobacter sp. NAS-14.1] gi|83840471|gb|EAP79644.1| flagellar hook assembly protein FlgD [Sulfitobacter sp. NAS-14.1] Length = 223 Score = 77.7 bits (190), Expect = 5e-13, Method: Composition-based stats. Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 3/98 (3%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 +N + Q S + FL LL QI++QDP EP+ +++ VAQLA SQ+EQ Sbjct: 8 LNNFTSSNQSSAQDSLGQLGEDYTKFLTLLTAQIQNQDPLEPVDSTQFVAQLAQLSQVEQ 67 Query: 63 SVQMNSTLQELLKSNN---LAQASSYIGKNITNADGSI 97 +VQ N+ L+ L + + +G+++T + Sbjct: 68 AVQTNTQLETLTSQISGLLNLGGTDLLGRDVTVQSDVV 105 >gi|126176157|ref|YP_001052306.1| flagellar hook capping protein [Shewanella baltica OS155] gi|125999362|gb|ABN63437.1| flagellar hook capping protein [Shewanella baltica OS155] Length = 220 Score = 77.7 bits (190), Expect = 5e-13, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 3/89 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 N V + + ++ F+ L+I QIK+QDPT+P+ ++E ++QLA FSQ+E Sbjct: 8 NNSVQNPAGALAAPGNDAASLKNEFMTLMIAQIKNQDPTKPLNSAEYISQLAQFSQVESL 67 Query: 64 VQMNSTLQE---LLKSNNLAQASSYIGKN 89 M ++++ + Q++S IGKN Sbjct: 68 EGMRKNQSNQMVMMENLGIVQSASLIGKN 96 >gi|238911004|ref|ZP_04654841.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 232 Score = 77.7 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 3/97 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 NT V T S + S Q +FL LL+ Q+K+QDPT P++ +E QLA S + Sbjct: 12 NTGVKTTTGSGSMTGSNAADLQSSFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGI 71 Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 ++N+ L + + ++ QA++ IG + +I Sbjct: 72 EKLNTMLGAISGQIDNSQSLQATTLIGHGVMVPGTTI 108 >gi|304409979|ref|ZP_07391598.1| flagellar hook capping protein [Shewanella baltica OS183] gi|307302308|ref|ZP_07582066.1| flagellar hook capping protein [Shewanella baltica BA175] gi|304351388|gb|EFM15787.1| flagellar hook capping protein [Shewanella baltica OS183] gi|306914346|gb|EFN44767.1| flagellar hook capping protein [Shewanella baltica BA175] Length = 256 Score = 77.7 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 12/128 (9%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS---TLQE 72 + L QD F LL Q+ QDP +P+ + +AQ+A FS ++ ++N L Sbjct: 50 PEAKSQQLTQDDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGIGKLNDQIVNLNS 109 Query: 73 LLKSNNLAQASSYIGKNI---------TNADGSISGVVNAIQVSSTGLTAITVDNTEIPI 123 ++ S+ QAS +G+ + + ++ GV++ + + ++ Sbjct: 110 VMTSSQALQASGLVGRKVLIPTDTGNISTESPTMKGVISTPSKIPELSVRVEDEKGQVVA 169 Query: 124 TTGIRISN 131 T + S+ Sbjct: 170 TFKVDGSD 177 >gi|227112520|ref|ZP_03826176.1| flagellar basal body rod modification protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 227 Score = 77.7 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q+ FL LL+ Q+K+QDPT PM + V+QLA + + ++N+TL + + +N Q Sbjct: 35 QNQFLTLLVAQLKNQDPTNPMSNDQLVSQLAQLNTVSGIEKLNTTLGSISGQINNNQSMQ 94 Query: 82 ASSYIGKNITNADGSI 97 A++ IG ++ I Sbjct: 95 ATTLIGHSVMIPGKDI 110 >gi|197104254|ref|YP_002129631.1| flagellar hook assembly protein [Phenylobacterium zucineum HLK1] gi|196477674|gb|ACG77202.1| flagellar hook assembly protein [Phenylobacterium zucineum HLK1] Length = 230 Score = 77.3 bits (189), Expect = 6e-13, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 2/70 (2%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL--KSNNLAQAS 83 D FL LL TQ+K+QDP P+ +++ Q+ + +EQ + N L+ L+ SN ++ A Sbjct: 25 DTFLALLTTQLKNQDPLSPLDSNQFTQQIVQMTGVEQQLLTNDLLKSLVSNTSNGVSTAV 84 Query: 84 SYIGKNITNA 93 S IGK + A Sbjct: 85 SLIGKEVRAA 94 >gi|90579908|ref|ZP_01235716.1| flagellar basal body rod modification protein [Vibrio angustum S14] gi|90438793|gb|EAS63976.1| flagellar basal body rod modification protein [Vibrio angustum S14] Length = 241 Score = 77.3 bits (189), Expect = 6e-13, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 11/115 (9%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---L 74 K L QD FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN L + Sbjct: 33 TGKNQLKQDDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGINKMNEQFGSLNSAM 92 Query: 75 KSNNLAQASSYIGKNI--------TNADGSISGVVNAIQVSSTGLTAITVDNTEI 121 SN QASS +G+++ +++G +SG+ Q + + + E+ Sbjct: 93 TSNQALQASSLVGQDVLIPNSTAMRSSEGEMSGMTRLTQSVDNAMLRVENEQGEL 147 >gi|304412509|ref|ZP_07394115.1| flagellar hook capping protein [Shewanella baltica OS183] gi|307307168|ref|ZP_07586906.1| flagellar hook capping protein [Shewanella baltica BA175] gi|304349151|gb|EFM13563.1| flagellar hook capping protein [Shewanella baltica OS183] gi|306910407|gb|EFN40838.1| flagellar hook capping protein [Shewanella baltica BA175] Length = 220 Score = 77.3 bits (189), Expect = 6e-13, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 3/89 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 N V + + ++ F+ L+I QIK+QDPT+P+ ++E ++QLA FSQ+E Sbjct: 8 NNSVQNPAGALAAPGNDAASLKNEFMTLMIAQIKNQDPTKPLNSAEYISQLAQFSQVESL 67 Query: 64 VQMNSTLQE---LLKSNNLAQASSYIGKN 89 M ++++ + Q++S IGKN Sbjct: 68 EGMRKNQSNQMVMMENLGIVQSASLIGKN 96 >gi|271500065|ref|YP_003333090.1| flagellar hook capping protein [Dickeya dadantii Ech586] gi|270343620|gb|ACZ76385.1| flagellar hook capping protein [Dickeya dadantii Ech586] Length = 223 Score = 77.3 bits (189), Expect = 7e-13, Method: Composition-based stats. Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q++FL LL+ Q+K+QDPT PM ++ V+QLA + + ++N+TL + + SN Q Sbjct: 31 QNSFLTLLVAQLKNQDPTNPMDNNQLVSQLAQLNTVSGIEKLNTTLGSISTQINSNQSIQ 90 Query: 82 ASSYIGKNITNADGSI 97 A+S IG + ++ Sbjct: 91 AASLIGHGVLVPGSTV 106 >gi|150390480|ref|YP_001320529.1| flagellar hook capping protein [Alkaliphilus metalliredigens QYMF] gi|149950342|gb|ABR48870.1| flagellar hook capping protein [Alkaliphilus metalliredigens QYMF] Length = 134 Score = 77.3 bits (189), Expect = 7e-13, Method: Composition-based stats. Identities = 26/61 (42%), Positives = 40/61 (65%) Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 + K K+ L +DAFLKLL+TQ+ +QDP PM+ E ++Q+A FS +EQ +N L+ Sbjct: 15 EPNEKKKNTSDLDKDAFLKLLVTQMSNQDPLNPMEDREFISQMAQFSSLEQMQNLNDGLK 74 Query: 72 E 72 + Sbjct: 75 D 75 >gi|313200564|ref|YP_004039222.1| flagellar hook capping protein [Methylovorus sp. MP688] gi|312439880|gb|ADQ83986.1| flagellar hook capping protein [Methylovorus sp. MP688] Length = 218 Score = 77.3 bits (189), Expect = 7e-13, Method: Composition-based stats. Identities = 31/98 (31%), Positives = 53/98 (54%), Gaps = 3/98 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 N + S S S + QD F+ LLITQ+K QDP PM ++ +QLA S + Sbjct: 6 NDLLTTMNTRKSSSGSSASDVQDRFMTLLITQMKSQDPLNPMDNAQVTSQLAQLSTVTGI 65 Query: 64 VQMNSTLQELL---KSNNLAQASSYIGKNITNADGSIS 98 ++N+T++ ++ +S+ QAS+ IG+ + S++ Sbjct: 66 DKLNTTMESMISNVQSSQTYQASNMIGRYVLTKGDSLT 103 >gi|254519416|ref|ZP_05131472.1| flagellar hook assembly protein FlgD [Clostridium sp. 7_2_43FAA] gi|226913165|gb|EEH98366.1| flagellar hook assembly protein FlgD [Clostridium sp. 7_2_43FAA] Length = 232 Score = 77.3 bits (189), Expect = 7e-13, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 52/104 (50%), Gaps = 2/104 (1%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 T T + K + + ++AFL +L ++ + DP +++ V Q+A F+ MEQ Sbjct: 9 TGARATDRGTQIVKPGQDMDKNAFLTILSAELSNMDPMGNNDSTQYVTQMAQFASMEQMT 68 Query: 65 QMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSS 108 +N+T+ ++ + + + K++ + +G+V ++ +S Sbjct: 69 NLNTTMSSYAHNSMVGKGVTL--KSVDSEGKPYTGIVKSVTSTS 110 >gi|144900943|emb|CAM77807.1| basal-body rod modification protein flgD precursor [Magnetospirillum gryphiswaldense MSR-1] Length = 220 Score = 77.3 bits (189), Expect = 7e-13, Method: Composition-based stats. Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 7/100 (7%) Query: 24 GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS---NNLA 80 D F++LL Q+++QDP +P A+E QL +S +EQ + N L E+L S +++ Sbjct: 25 DYDMFIQLLCAQLENQDPLDPTDATEFTNQLVQYSNLEQQMATNDKLDEVLSSIDLMSMS 84 Query: 81 QASSYIGKNITNADGSIS----GVVNAIQVSSTGLTAITV 116 Y+G + +IS G V+A V S A V Sbjct: 85 SGVGYMGHTVEAEGDTISVQDDGTVDAAWVYSLDSAATDV 124 >gi|266623342|ref|ZP_06116277.1| flagellar hook capping protein [Clostridium hathewayi DSM 13479] gi|288864880|gb|EFC97178.1| flagellar hook capping protein [Clostridium hathewayi DSM 13479] Length = 205 Score = 77.3 bits (189), Expect = 7e-13, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 15/119 (12%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77 S K + + FL L++ Q+K+QD P+ ++ V QLA S M+Q ++E+ + Sbjct: 62 ASDKAVSMEDFLTLMVAQLKNQDFMNPVDDTQYVTQLAQISTMQQ-------MEEMAYNA 114 Query: 78 NLAQASSYIGKNITNADGSI-------SGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129 +S +GK +T A ++ GVVN + + G I V+ + + I Sbjct: 115 KSTYVTSLVGKTVTAAKFTVAGDLKKTEGVVNKVSLL-DGKFVIYVEGESYGMDEIMEI 172 >gi|253688973|ref|YP_003018163.1| flagellar hook capping protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755551|gb|ACT13627.1| flagellar hook capping protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 224 Score = 77.3 bits (189), Expect = 7e-13, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q+ FL LL+ Q+K+QDPT PM + V+QLA + + ++N+TL + + +N Q Sbjct: 32 QNQFLTLLVAQLKNQDPTNPMSNDQLVSQLAQLNTVSGIEKLNTTLGSISGQINNNQSMQ 91 Query: 82 ASSYIGKNITNADGSI 97 A++ IG ++ I Sbjct: 92 ATTLIGHSVMIPGKDI 107 >gi|254510795|ref|ZP_05122862.1| basal-body rod modification protein FlgD [Rhodobacteraceae bacterium KLH11] gi|221534506|gb|EEE37494.1| basal-body rod modification protein FlgD [Rhodobacteraceae bacterium KLH11] Length = 221 Score = 77.3 bits (189), Expect = 7e-13, Method: Composition-based stats. Identities = 31/80 (38%), Positives = 49/80 (61%), Gaps = 3/80 (3%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL-- 73 ++ T + FL++L Q ++QDP EP+ +SE +QLA FS +EQ VQ N+ L +L Sbjct: 21 TQRAALTSDFETFLRMLTVQARNQDPLEPLDSSEYASQLAQFSMVEQQVQANALLSDLSL 80 Query: 74 -LKSNNLAQASSYIGKNITN 92 L S NL Q +S++G ++ Sbjct: 81 TLGSVNLNQLASWVGMDVRT 100 >gi|149927797|ref|ZP_01916048.1| Flagellar hook capping protein [Limnobacter sp. MED105] gi|149823419|gb|EDM82650.1| Flagellar hook capping protein [Limnobacter sp. MED105] Length = 223 Score = 77.3 bits (189), Expect = 8e-13, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 47/99 (47%), Gaps = 3/99 (3%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 + T + ++ Q+ F+ LL+ Q+K+QDP PM ++ +Q+A + + Sbjct: 9 LGNNSGTTAAKKKTDENSPEAIQERFMSLLVAQLKNQDPLAPMDNAQVTSQMAQLNTVTG 68 Query: 63 SVQMNSTLQELLKS---NNLAQASSYIGKNITNADGSIS 98 +N+T++ + S N QA+S +G+ + + Sbjct: 69 INTLNATMEGVAASINANQTVQATSMLGRAVLTEGNDLK 107 >gi|281600494|gb|ADA73478.1| Flagellar hook protein FlgE [Shigella flexneri 2002017] Length = 229 Score = 76.9 bits (188), Expect = 8e-13, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNITNADGSI 97 AS+ IG + ++ Sbjct: 92 ASNLIGHGVMIPGTTV 107 >gi|89075494|ref|ZP_01161905.1| flagellar basal body rod modification protein [Photobacterium sp. SKA34] gi|89048766|gb|EAR54337.1| flagellar basal body rod modification protein [Photobacterium sp. SKA34] Length = 241 Score = 76.9 bits (188), Expect = 8e-13, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 11/115 (9%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---L 74 K L QD FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN L + Sbjct: 33 TGKNQLKQDDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGINKMNEQFGSLNSAM 92 Query: 75 KSNNLAQASSYIGKNI--------TNADGSISGVVNAIQVSSTGLTAITVDNTEI 121 SN QASS +G+++ +++G +SG+ Q + + + E+ Sbjct: 93 TSNQALQASSLVGQDVLIPNSTAMRSSEGEMSGMTRLTQSVDNAMLRVENEQGEL 147 >gi|260438801|ref|ZP_05792617.1| flagellar hook capping protein [Butyrivibrio crossotus DSM 2876] gi|292808790|gb|EFF67995.1| flagellar hook capping protein [Butyrivibrio crossotus DSM 2876] Length = 149 Score = 76.9 bits (188), Expect = 8e-13, Method: Composition-based stats. Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 7/99 (7%) Query: 7 VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66 N T + +K +L +DAFL++L ++++QDP EP +E V+Q++ FSQ+E + Sbjct: 14 ANYTDGKANKKTGSDSLNKDAFLQILAAEMQYQDPLEPSSNTEWVSQMSSFSQIESLQTV 73 Query: 67 NSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQ 105 + ++ E AS+ +GK + D +G I Sbjct: 74 SDSISE-------QGASNLVGKRVILEDTDSAGNKKYIT 105 >gi|222824501|ref|YP_002576075.1| flagellar hook assembly protein FlgD [Campylobacter lari RM2100] gi|222539722|gb|ACM64823.1| flagellar hook assembly protein FlgD [Campylobacter lari RM2100] Length = 335 Score = 76.9 bits (188), Expect = 8e-13, Method: Composition-based stats. Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 10/86 (11%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78 L +DAFLKLL+ +++HQDPT+PM + + Q A S +E N T+ +L+ + Sbjct: 41 PGAELDKDAFLKLLLIELQHQDPTDPMDTEKMLTQTAQLSALEMQDNTNKTMTQLVDAMT 100 Query: 79 LAQ----------ASSYIGKNITNAD 94 Q A + +GK T D Sbjct: 101 KLQNSIAASTGMSALAAVGKLATVKD 126 >gi|163750571|ref|ZP_02157809.1| flagellar basal body rod modification protein [Shewanella benthica KT99] gi|161329726|gb|EDQ00715.1| flagellar basal body rod modification protein [Shewanella benthica KT99] Length = 268 Score = 76.9 bits (188), Expect = 8e-13, Method: Composition-based stats. Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 12/124 (9%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS---TLQE 72 S + L QD F LL Q+ QDP +P+ + +AQ+A FS ++ ++N L Sbjct: 62 PEASSQGLSQDDFFSLLSQQLSMQDPFKPVDNDQMIAQMAAFSTVDGISKLNDEIINLNA 121 Query: 73 LLKSNNLAQASSYIGKNITNADGS---------ISGVVNAIQVSSTGLTAITVDNTEIPI 123 ++ S+ QAS +G+ + + + GVV+ + T + I D ++ Sbjct: 122 VMTSSQALQASGLVGQKVLIPSDTGYLSEEGSVLKGVVSTPEAIETIVVRIEDDKGQLIT 181 Query: 124 TTGI 127 T I Sbjct: 182 TFNI 185 >gi|127512278|ref|YP_001093475.1| flagellar basal body rod modification protein [Shewanella loihica PV-4] gi|126637573|gb|ABO23216.1| flagellar hook capping protein [Shewanella loihica PV-4] Length = 260 Score = 76.9 bits (188), Expect = 8e-13, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 3/89 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS-- 68 ++ + L Q+ F LL Q+ QDP +P+ + +AQ+A FS ++ ++N Sbjct: 49 EESSIPEAKSQELTQEDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGITKLNEEI 108 Query: 69 -TLQELLKSNNLAQASSYIGKNITNADGS 96 L ++ S+ QAS +G+ + + Sbjct: 109 VNLNTVMTSSQALQASGLVGQKVLIPSDT 137 >gi|330447902|ref|ZP_08311550.1| flagellar hook capping family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492093|dbj|GAA06047.1| flagellar hook capping family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 225 Score = 76.9 bits (188), Expect = 8e-13, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 3/94 (3%) Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67 + S + ++ F+ L++ QI++QDP P+ +E V QLA FSQ+E + M Sbjct: 20 TSAVADNPNSANDANGLKNEFINLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVESTENMA 79 Query: 68 STLQE---LLKSNNLAQASSYIGKNITNADGSIS 98 +Q LL + + + +G+ + + Sbjct: 80 KLMQNSMVLLDNMQVLSTAGLVGQTVYVEGNEVE 113 >gi|110677576|ref|YP_680583.1| flagellar basal body rod modification protein [Roseobacter denitrificans OCh 114] gi|109453692|gb|ABG29897.1| flagellar basal-body rod modification protein, putative [Roseobacter denitrificans OCh 114] Length = 226 Score = 76.9 bits (188), Expect = 8e-13, Method: Composition-based stats. Identities = 35/87 (40%), Positives = 49/87 (56%), Gaps = 6/87 (6%) Query: 9 PTQQEFSKSKSKK---TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65 PT+Q + S + + FLK+L Q + QDP EP+ +SE AQLA FS +EQ V Sbjct: 11 PTRQLGTAQASNSAALSSDFETFLKMLTAQARFQDPLEPIDSSEYAAQLAQFSMVEQQVL 70 Query: 66 MNSTLQEL---LKSNNLAQASSYIGKN 89 N L EL L SN++ Q +++IG Sbjct: 71 SNDLLTELGAQLGSNSIGQMAAWIGME 97 >gi|255261779|ref|ZP_05341121.1| flagellar basal body rod modification protein [Thalassiobium sp. R2A62] gi|255104114|gb|EET46788.1| flagellar basal body rod modification protein [Thalassiobium sp. R2A62] Length = 220 Score = 76.9 bits (188), Expect = 8e-13, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 54/95 (56%), Gaps = 6/95 (6%) Query: 1 MEINTEVNPTQQEFSKS---KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVF 57 M+I+ +P Q K + + + FLK++ QI++QDP +P+ +++ QLA F Sbjct: 1 MDISQLQSPGQLSSPAGEQIKPQISSDFETFLKMMTAQIENQDPLDPIDSADYAVQLATF 60 Query: 58 SQMEQSVQMNSTLQEL---LKSNNLAQASSYIGKN 89 S +EQ V+ N L L L+ + +A+ ++++G + Sbjct: 61 SSVEQQVKTNDLLSALGGQLQLSGMAEMAAWVGMD 95 >gi|330445347|ref|ZP_08308999.1| flagellar hook capping family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489538|dbj|GAA03496.1| flagellar hook capping family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 241 Score = 76.9 bits (188), Expect = 8e-13, Method: Composition-based stats. Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 3/82 (3%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---L 74 K L QD FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN L + Sbjct: 33 TGKNQLKQDDFLSLLTKQLAQQDPFKPVGNDQMIAQMASFATVDGINKMNEQFGSLNSAM 92 Query: 75 KSNNLAQASSYIGKNITNADGS 96 SN QASS +G+++ + + Sbjct: 93 TSNQALQASSLVGQDVLIPNST 114 >gi|117919771|ref|YP_868963.1| flagellar basal body rod modification protein [Shewanella sp. ANA-3] gi|117612103|gb|ABK47557.1| basal-body rod modification protein FlgD [Shewanella sp. ANA-3] Length = 259 Score = 76.9 bits (188), Expect = 8e-13, Method: Composition-based stats. Identities = 34/126 (26%), Positives = 62/126 (49%), Gaps = 10/126 (7%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 PT ++KS++ L Q+ F LL Q+ QDP +P+ + +AQ+A FS ++ ++N Sbjct: 47 PTSSAVPEAKSQQ-LTQEDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGISKLND 105 Query: 69 ---TLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITT 125 L ++ S+ QAS +G+ + + I S GL + + +IP+ Sbjct: 106 QIVNLNSVMTSSQALQASGLVGRKVLLPTDT-----GYISAESPGLNGVISTSEKIPVIN 160 Query: 126 GIRISN 131 +RI + Sbjct: 161 -VRIED 165 >gi|283833631|ref|ZP_06353372.1| basal-body rod modification protein FlgD [Citrobacter youngae ATCC 29220] gi|291071314|gb|EFE09423.1| basal-body rod modification protein FlgD [Citrobacter youngae ATCC 29220] Length = 232 Score = 76.9 bits (188), Expect = 8e-13, Method: Composition-based stats. Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 3/97 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 N V S + S Q +FL LL+ Q+K+QDPT P++ +E QLA S + Sbjct: 12 NAGVKAATGNSSLTGSNAADLQSSFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGI 71 Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 ++N+TL + + ++ QAS+ IG + +I Sbjct: 72 EKLNTTLGSISGQIDNSQSLQASTLIGHGVMIPGTTI 108 >gi|83944158|ref|ZP_00956614.1| flagellar hook assembly protein FlgD [Sulfitobacter sp. EE-36] gi|83845025|gb|EAP82906.1| flagellar hook assembly protein FlgD [Sulfitobacter sp. EE-36] Length = 223 Score = 76.9 bits (188), Expect = 9e-13, Method: Composition-based stats. Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 3/98 (3%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 +N + Q S + FL LL QI++QDP EP+ +++ VAQLA SQ+EQ Sbjct: 8 LNNFTSTNQSSAQDSLGQLGEDYTKFLTLLTAQIQNQDPLEPVDSTQFVAQLAQLSQVEQ 67 Query: 63 SVQMNSTLQELLKSNN---LAQASSYIGKNITNADGSI 97 +VQ N+ L+ L + + +G+++T + Sbjct: 68 AVQTNTQLETLTSQISGLLNLGGTDLLGRDVTVQSDVV 105 >gi|188592116|ref|YP_001796714.1| flagellar basal body rod modification protein [Cupriavidus taiwanensis LMG 19424] gi|170938490|emb|CAP63477.1| FlgD: Basal-body rod modification protein [Cupriavidus taiwanensis LMG 19424] Length = 221 Score = 76.9 bits (188), Expect = 9e-13, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 3/99 (3%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 + + + + Q+ FL +L+TQ+ +QDP PM ++ +QLA S + Sbjct: 7 VGSNTQGINDALKSGSASASELQNNFLTMLVTQMNNQDPLNPMDNAQLTSQLAQISTVSG 66 Query: 63 SVQMNSTLQELLKSNNLAQA---SSYIGKNITNADGSIS 98 MN+TL +LL + ++A ++ IG+ + ++ Sbjct: 67 MQTMNATLSQLLGQVSASRAMDSAALIGRTVMVPGKQVA 105 >gi|299822272|ref|ZP_07054158.1| flagellar hook capping protein [Listeria grayi DSM 20601] gi|299815801|gb|EFI83039.1| flagellar hook capping protein [Listeria grayi DSM 20601] Length = 145 Score = 76.9 bits (188), Expect = 9e-13, Method: Composition-based stats. Identities = 33/128 (25%), Positives = 72/128 (56%), Gaps = 7/128 (5%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 + + +L +D F+KL +T +++QDP+ P+ ++ ++Q++ + MEQ M+S + Sbjct: 18 DSNALTNAATNSLNKDDFMKLFLTSLQYQDPSSPLDTNQMMSQMSQLAMMEQVSNMSSAV 77 Query: 71 QEL---LKSNNLAQASSYIGKNITN---ADGSISGVVNAIQVSSTGLTA-ITVDNTEIPI 123 +L +S+ + A +IGK+I +SG+V +IQ ++ G+ + ++T +P+ Sbjct: 78 NKLSDQAQSSAMQSAVGFIGKSIKGVNLNGDVVSGLVESIQQTTNGVMLKLKDNDTVVPL 137 Query: 124 TTGIRISN 131 T ++N Sbjct: 138 TYITEVNN 145 >gi|260867438|ref|YP_003233840.1| flagellar hook assembly protein FlgD [Escherichia coli O111:H- str. 11128] gi|257763794|dbj|BAI35289.1| flagellar hook assembly protein FlgD [Escherichia coli O111:H- str. 11128] gi|323175694|gb|EFZ61288.1| basal-body rod modification protein flgD [Escherichia coli 1180] Length = 231 Score = 76.9 bits (188), Expect = 9e-13, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNITNADGSI 97 AS+ IG + ++ Sbjct: 92 ASNLIGHGVMIPGTTV 107 >gi|307137710|ref|ZP_07497066.1| flagellar basal body rod modification protein [Escherichia coli H736] gi|331641619|ref|ZP_08342754.1| basal-body rod modification protein FlgD [Escherichia coli H736] gi|331038417|gb|EGI10637.1| basal-body rod modification protein FlgD [Escherichia coli H736] Length = 231 Score = 76.9 bits (188), Expect = 9e-13, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNITNADGSI 97 AS+ IG + ++ Sbjct: 92 ASNLIGHGVMIPGTTV 107 >gi|24051371|gb|AAN42702.1| flagellar hook protein FlgE [Shigella flexneri 2a str. 301] Length = 642 Score = 76.9 bits (188), Expect = 9e-13, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNITNADGSI 97 AS+ IG + ++ Sbjct: 92 ASNLIGHGVMIPGTTV 107 >gi|295097204|emb|CBK86294.1| Flagellar hook capping protein [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 232 Score = 76.9 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 49/94 (52%), Gaps = 4/94 (4%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLG-QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59 M ++T + + + + F+KLL+ Q+++QDPT PM ++ +QLA F+ Sbjct: 1 MTVSTVNDTSGNTSTYGTGSSAADLSEQFMKLLVAQMQNQDPTNPMDNNQLTSQLAQFNT 60 Query: 60 MEQSVQMNST---LQELLKSNNLAQASSYIGKNI 90 ++N++ +Q L+ A+S++G+ + Sbjct: 61 AAGVEKLNASVGNVQALMAQLGSMSAASWVGRGV 94 >gi|82777310|ref|YP_403659.1| flagellar basal body rod modification protein [Shigella dysenteriae Sd197] gi|309788142|ref|ZP_07682748.1| basal-body rod modification protein flgD [Shigella dysenteriae 1617] gi|81241458|gb|ABB62168.1| initiation of hook assembly [Shigella dysenteriae Sd197] gi|308923994|gb|EFP69495.1| basal-body rod modification protein flgD [Shigella dysenteriae 1617] Length = 231 Score = 76.9 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNITNADGSI 97 AS+ IG + ++ Sbjct: 92 ASNLIGHGVIIPGTTV 107 >gi|307131610|ref|YP_003883626.1| flagellar basal-body rod modification protein flgD [Dickeya dadantii 3937] gi|306529139|gb|ADM99069.1| Flagellar basal-body rod modification protein flgD [Dickeya dadantii 3937] Length = 223 Score = 76.9 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q++FL LL+ Q+K+QDPT PM ++ V+QLA + + ++N+TL + + SN Q Sbjct: 31 QNSFLTLLVAQLKNQDPTNPMDNNQLVSQLAQLNTVSGIEKLNTTLGSISTQINSNQSIQ 90 Query: 82 ASSYIGKNITNADGSI 97 A+S IG + + Sbjct: 91 AASLIGHGVLVPGTKV 106 >gi|288940408|ref|YP_003442648.1| flagellar hook capping protein [Allochromatium vinosum DSM 180] gi|288895780|gb|ADC61616.1| flagellar hook capping protein [Allochromatium vinosum DSM 180] Length = 236 Score = 76.9 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 54/110 (49%), Gaps = 11/110 (10%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 N+ S LGQ FLKL+ITQ+ +QDPT P++ + +Q+A FS + Sbjct: 21 NSTTGTAAGTASTGSGNNALGQSDFLKLMITQLTNQDPTNPVENEDFASQMAQFSTLTGI 80 Query: 64 VQMNSTLQELLK---SNNLAQASSYIGKNI--------TNADGSISGVVN 102 ++ S+ + L K +A++ +G+++ +A +SG V+ Sbjct: 81 EELTSSFETLSKTLLQGQTVEAATLVGQSVLVPASKADVSAGQKVSGAVD 130 >gi|188492655|ref|ZP_02999925.1| flagellar hook capping protein FlgD [Escherichia coli 53638] gi|188487854|gb|EDU62957.1| flagellar hook capping protein FlgD [Escherichia coli 53638] Length = 231 Score = 76.9 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 46/76 (60%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNITNADGSI 97 AS+ IG + + ++ Sbjct: 92 ASNLIGHGVMSPGTTV 107 >gi|160939660|ref|ZP_02087008.1| hypothetical protein CLOBOL_04552 [Clostridium bolteae ATCC BAA-613] gi|158437451|gb|EDP15215.1| hypothetical protein CLOBOL_04552 [Clostridium bolteae ATCC BAA-613] Length = 233 Score = 76.9 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 15/121 (12%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77 K + D FL L++ Q+K+QD P+ ++ V QLA S M+Q ++E+ + Sbjct: 89 GDDKKVSMDDFLTLMVAQLKNQDFMNPVDDTQYVTQLAQISTMQQ-------MEEMAYNA 141 Query: 78 NLAQASSYIGKNITNADGSIS-------GVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 + +S +GKN++ A ++S GVV I + G I VD + + I Sbjct: 142 KSSYVASLVGKNVSAAKFTVSGELKKADGVVEKISLL-DGKFVIYVDGEAFSMDEIMEIK 200 Query: 131 N 131 + Sbjct: 201 D 201 >gi|317492429|ref|ZP_07950858.1| flagellar hook capping protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919768|gb|EFV41098.1| flagellar hook capping protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 233 Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 3/100 (3%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 ++ ++ N T S + ++FL LL+ Q+K+QDPT P++ +E +QLA + + Sbjct: 11 VDNSSATNKTNGTNSLTSQNSQDLSNSFLTLLVAQLKNQDPTNPLQNNELTSQLAQINTV 70 Query: 61 EQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 ++N+TL + + SN QASS IG + +I Sbjct: 71 SGIEKLNTTLGSISGQINSNQSLQASSLIGHGVMIPGKNI 110 >gi|194438126|ref|ZP_03070219.1| flagellar hook capping protein FlgD [Escherichia coli 101-1] gi|253773901|ref|YP_003036732.1| flagellar basal body rod modification protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161181|ref|YP_003044289.1| flagellar basal body rod modification protein [Escherichia coli B str. REL606] gi|300928373|ref|ZP_07143907.1| flagellar hook capping protein [Escherichia coli MS 187-1] gi|194423062|gb|EDX39056.1| flagellar hook capping protein FlgD [Escherichia coli 101-1] gi|242376879|emb|CAQ31596.1| flagellar biosynthesis, initiation of hook assembly [Escherichia coli BL21(DE3)] gi|253324945|gb|ACT29547.1| flagellar hook capping protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973082|gb|ACT38753.1| flagellar basal body rod modification protein D [Escherichia coli B str. REL606] gi|253977296|gb|ACT42966.1| flagellar basal body rod modification protein D [Escherichia coli BL21(DE3)] gi|300463631|gb|EFK27124.1| flagellar hook capping protein [Escherichia coli MS 187-1] gi|323962674|gb|EGB58252.1| flagellar hook capping protein [Escherichia coli H489] gi|323973336|gb|EGB68525.1| flagellar hook capping protein [Escherichia coli TA007] Length = 231 Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNITNADGSI 97 AS+ IG + +I Sbjct: 92 ASNLIGHGVMIPGTTI 107 >gi|15801192|ref|NP_287209.1| flagellar basal body rod modification protein [Escherichia coli O157:H7 EDL933] gi|12514613|gb|AAG55821.1|AE005317_10 flagellar biosynthesis, initiation of hook assembly [Escherichia coli O157:H7 str. EDL933] Length = 231 Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNITNADGSI 97 AS+ IG + ++ Sbjct: 92 ASNLIGHGVMIPGTTV 107 >gi|163742531|ref|ZP_02149917.1| basal-body rod modification protein FlgD [Phaeobacter gallaeciensis 2.10] gi|161384116|gb|EDQ08499.1| basal-body rod modification protein FlgD [Phaeobacter gallaeciensis 2.10] Length = 230 Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 3/98 (3%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL- 73 K + + FLK+L Q ++QDP EP+ ++E AQLA FS +EQ VQ N L+ + Sbjct: 24 PKKTTGIASDFETFLKMLTAQARYQDPLEPIDSTEYSAQLAQFSMVEQQVQGNEVLEGIQ 83 Query: 74 --LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSST 109 L N+A S ++G +A + N + VS Sbjct: 84 AQLGLANMAAMSGWVGMETRSAAPAYFDGTNPVTVSPN 121 >gi|226939375|ref|YP_002794448.1| flagellar hook capping protein [Laribacter hongkongensis HLHK9] gi|226714301|gb|ACO73439.1| flagellar hook capping protein [Laribacter hongkongensis HLHK9] Length = 239 Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 14/107 (13%) Query: 3 INTEVNPT----------QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVA 52 + T VNPT +K+KS+ QD FLKLLITQ++ QDP P+ + + Sbjct: 1 MTTAVNPTSSTEDPFAGINGTNTKTKSEADEIQDRFLKLLITQLQTQDPLNPLDNYQMTS 60 Query: 53 QLAVFSQMEQSVQMNST---LQELLKSNNLAQASSYIGKNITNADGS 96 Q+A S ++ ++NS+ L E ++ A+ IG ++ +GS Sbjct: 61 QMAQISSVQGIEKLNSSVSALTEAYAASQAFAAAGMIGH-VSLIEGS 106 >gi|218288301|ref|ZP_03492600.1| flagellar hook capping protein [Alicyclobacillus acidocaldarius LAA1] gi|258511378|ref|YP_003184812.1| flagellar hook capping protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|218241660|gb|EED08833.1| flagellar hook capping protein [Alicyclobacillus acidocaldarius LAA1] gi|257478104|gb|ACV58423.1| flagellar hook capping protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 159 Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 37/117 (31%), Positives = 66/117 (56%), Gaps = 11/117 (9%) Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST-------LQEL 73 +L ++ F++LL+TQ+++QDP P+ ++ +AQLA FS +E+ Q+ T +Q L Sbjct: 41 NSLNENDFMQLLVTQLQNQDPLNPVDNTQMLAQLAQFSALEEMTQVAQTDAQVLSAVQNL 100 Query: 74 LKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGI 127 +L A S IG ++T D S + G V+++ ++ G I V+ T P+T + Sbjct: 101 ESEMSLLMAHSLIGASVTVQDASGNQVQGTVSSVTMNQ-GTPQIVVNGTSYPLTQVV 156 >gi|30062612|ref|NP_836783.1| flagellar basal body rod modification protein [Shigella flexneri 2a str. 2457T] gi|30040858|gb|AAP16589.1| flagellar hook formation protein FlgD [Shigella flexneri 2a str. 2457T] gi|313650474|gb|EFS14881.1| basal-body rod modification protein flgD [Shigella flexneri 2a str. 2457T] gi|332758234|gb|EGJ88557.1| basal-body rod modification protein flgD [Shigella flexneri 4343-70] gi|332761420|gb|EGJ91704.1| basal-body rod modification protein flgD [Shigella flexneri K-671] gi|332767682|gb|EGJ97875.1| flagellar hook capping family protein [Shigella flexneri 2930-71] gi|333005536|gb|EGK25054.1| basal-body rod modification protein flgD [Shigella flexneri K-218] gi|333019309|gb|EGK38592.1| basal-body rod modification protein flgD [Shigella flexneri K-304] Length = 231 Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNITNADGSI 97 AS+ IG + ++ Sbjct: 92 ASNLIGHGVMIPGTTV 107 >gi|323947623|gb|EGB43627.1| flagellar hook capping protein [Escherichia coli H120] Length = 231 Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNITNADGSI 97 AS+ IG + ++ Sbjct: 92 ASNLIGHGVMIPGTTV 107 >gi|146293691|ref|YP_001184115.1| flagellar basal body rod modification protein [Shewanella putrefaciens CN-32] gi|145565381|gb|ABP76316.1| flagellar hook capping protein [Shewanella putrefaciens CN-32] gi|319427090|gb|ADV55164.1| flagellar hook capping protein [Shewanella putrefaciens 200] Length = 253 Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 31/110 (28%), Positives = 59/110 (53%), Gaps = 6/110 (5%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 PT+ ++KS++ L Q+ F LL Q+ QDP +P+ + +AQ+A FS ++ ++N Sbjct: 41 PTESIVPEAKSQQ-LTQEDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGISKLNK 99 Query: 69 ---TLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAIT 115 L ++ S+ QAS +G+ + + +G V++ S G+ + T Sbjct: 100 EIVNLNSVMTSSQALQASGLVGRKVLLP--TDTGYVSSENPSMKGVISTT 147 >gi|163738073|ref|ZP_02145489.1| flagellar hook capping protein [Phaeobacter gallaeciensis BS107] gi|161388689|gb|EDQ13042.1| flagellar hook capping protein [Phaeobacter gallaeciensis BS107] Length = 230 Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 3/98 (3%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL- 73 K + + FLK+L Q ++QDP EP+ ++E AQLA FS +EQ VQ N L+ + Sbjct: 24 PKKTTGIASDFETFLKMLTAQARYQDPLEPIDSTEYSAQLAQFSMVEQQVQGNEVLEGIQ 83 Query: 74 --LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSST 109 L N+A S ++G +A + N + VS Sbjct: 84 AQLGLANMAAMSGWVGMETRSAAPAYFDGTNPVTVSPN 121 >gi|157961170|ref|YP_001501204.1| flagellar basal body rod modification protein [Shewanella pealeana ATCC 700345] gi|157846170|gb|ABV86669.1| flagellar hook capping protein [Shewanella pealeana ATCC 700345] Length = 270 Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 58/135 (42%), Gaps = 20/135 (14%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS---TLQE 72 + + L Q+ F LL Q+ QDP +P++ + + Q+A FS ++ ++N L Sbjct: 64 PEPNSQELTQEDFFSLLSQQLSMQDPFKPVENDQMIQQMASFSTVDGISKLNEEIINLNA 123 Query: 73 LLKSNNLAQASSYIGKNI---------TNADGSISGVVNA--------IQVSSTGLTAIT 115 L S+ QAS +G+ + + D S+ G+++ +++ IT Sbjct: 124 LTSSSQALQASGLVGQKVLIPSDTAHISAEDPSMKGIISTPEPIESVIVRIEDEKGQLIT 183 Query: 116 VDNTEIPITTGIRIS 130 N + I +S Sbjct: 184 TYNVDGSAGGNIDVS 198 >gi|83859392|ref|ZP_00952913.1| flagellar hook assembly protein FlgD [Oceanicaulis alexandrii HTCC2633] gi|83852839|gb|EAP90692.1| flagellar hook assembly protein FlgD [Oceanicaulis alexandrii HTCC2633] Length = 242 Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 3/69 (4%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL---AQA 82 D FL LL Q+K+QDP +P+++ + V QL FS +EQ + N +L+ LL +A Sbjct: 29 DTFLTLLTEQLKNQDPLDPLESEQFVQQLVQFSSVEQQIASNESLEALLALQQSDAQLKA 88 Query: 83 SSYIGKNIT 91 +IGK T Sbjct: 89 LDFIGKEAT 97 >gi|323967016|gb|EGB62442.1| flagellar hook capping protein [Escherichia coli M863] gi|323976552|gb|EGB71640.1| flagellar hook capping protein [Escherichia coli TW10509] gi|327253474|gb|EGE65112.1| basal-body rod modification protein flgD [Escherichia coli STEC_7v] Length = 231 Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNITNADGSI 97 AS+ IG + ++ Sbjct: 92 ASNLIGHGVMIPGTTV 107 >gi|16129038|ref|NP_415593.1| flagellar hook assembly protein [Escherichia coli str. K-12 substr. MG1655] gi|89107921|ref|AP_001701.1| flagellar hook assembly protein [Escherichia coli str. K-12 substr. W3110] gi|110805092|ref|YP_688612.1| flagellar basal body rod modification protein [Shigella flexneri 5 str. 8401] gi|170080726|ref|YP_001730046.1| flagellar hook assembly protein [Escherichia coli str. K-12 substr. DH10B] gi|191168471|ref|ZP_03030259.1| flagellar hook capping protein FlgD [Escherichia coli B7A] gi|209918329|ref|YP_002292413.1| flagellar basal body rod modification protein [Escherichia coli SE11] gi|218553654|ref|YP_002386567.1| flagellar basal body rod modification protein [Escherichia coli IAI1] gi|218694609|ref|YP_002402276.1| flagellar basal body rod modification protein [Escherichia coli 55989] gi|238900329|ref|YP_002926125.1| flagellar hook assembly protein [Escherichia coli BW2952] gi|256018668|ref|ZP_05432533.1| flagellar basal body rod modification protein [Shigella sp. D9] gi|256023227|ref|ZP_05437092.1| flagellar basal body rod modification protein [Escherichia sp. 4_1_40B] gi|260854558|ref|YP_003228449.1| flagellar hook assembly protein FlgD [Escherichia coli O26:H11 str. 11368] gi|293433365|ref|ZP_06661793.1| basal-body rod modification protein flgD [Escherichia coli B088] gi|300816777|ref|ZP_07096997.1| flagellar hook capping protein [Escherichia coli MS 107-1] gi|300821144|ref|ZP_07101293.1| flagellar hook capping protein [Escherichia coli MS 119-7] gi|300922601|ref|ZP_07138701.1| flagellar hook capping protein [Escherichia coli MS 182-1] gi|300950170|ref|ZP_07164115.1| flagellar hook capping protein [Escherichia coli MS 116-1] gi|300954385|ref|ZP_07166839.1| flagellar hook capping protein [Escherichia coli MS 175-1] gi|301029710|ref|ZP_07192764.1| flagellar hook capping protein [Escherichia coli MS 196-1] gi|301328555|ref|ZP_07221616.1| flagellar hook capping protein [Escherichia coli MS 78-1] gi|301644987|ref|ZP_07244953.1| flagellar hook capping protein [Escherichia coli MS 146-1] gi|309798069|ref|ZP_07692444.1| flagellar hook capping protein [Escherichia coli MS 145-7] gi|331652128|ref|ZP_08353147.1| basal-body rod modification protein FlgD [Escherichia coli M718] gi|331667475|ref|ZP_08368339.1| basal-body rod modification protein FlgD [Escherichia coli TA271] gi|331676866|ref|ZP_08377562.1| basal-body rod modification protein FlgD [Escherichia coli H591] gi|332279737|ref|ZP_08392150.1| flagellar hook protein FlgE [Shigella sp. D9] gi|2494526|sp|P75936|FLGD_ECOLI RecName: Full=Basal-body rod modification protein flgD gi|1787315|gb|AAC74159.1| flagellar hook assembly protein [Escherichia coli str. K-12 substr. MG1655] gi|4062652|dbj|BAA35883.1| flagellar hook assembly protein [Escherichia coli str. K12 substr. W3110] gi|110614640|gb|ABF03307.1| basal-body rod modification protein FlgD [Shigella flexneri 5 str. 8401] gi|169888561|gb|ACB02268.1| flagellar hook assembly protein [Escherichia coli str. K-12 substr. DH10B] gi|190901490|gb|EDV61251.1| flagellar hook capping protein FlgD [Escherichia coli B7A] gi|209911588|dbj|BAG76662.1| flagellar hook formation protein FlgD [Escherichia coli SE11] gi|218351341|emb|CAU97047.1| flagellar hook assembly protein [Escherichia coli 55989] gi|218360422|emb|CAQ97974.1| flagellar hook assembly protein [Escherichia coli IAI1] gi|238861107|gb|ACR63105.1| flagellar hook assembly protein [Escherichia coli BW2952] gi|257753207|dbj|BAI24709.1| flagellar hook assembly protein FlgD [Escherichia coli O26:H11 str. 11368] gi|260449785|gb|ACX40207.1| flagellar hook capping protein [Escherichia coli DH1] gi|291324184|gb|EFE63606.1| basal-body rod modification protein flgD [Escherichia coli B088] gi|299877398|gb|EFI85609.1| flagellar hook capping protein [Escherichia coli MS 196-1] gi|300318621|gb|EFJ68405.1| flagellar hook capping protein [Escherichia coli MS 175-1] gi|300421078|gb|EFK04389.1| flagellar hook capping protein [Escherichia coli MS 182-1] gi|300450517|gb|EFK14137.1| flagellar hook capping protein [Escherichia coli MS 116-1] gi|300526443|gb|EFK47512.1| flagellar hook capping protein [Escherichia coli MS 119-7] gi|300530551|gb|EFK51613.1| flagellar hook capping protein [Escherichia coli MS 107-1] gi|300844947|gb|EFK72707.1| flagellar hook capping protein [Escherichia coli MS 78-1] gi|301076716|gb|EFK91522.1| flagellar hook capping protein [Escherichia coli MS 146-1] gi|308118352|gb|EFO55614.1| flagellar hook capping protein [Escherichia coli MS 145-7] gi|309701347|emb|CBJ00648.1| basal-body rod modification protein FlgD [Escherichia coli ETEC H10407] gi|315135707|dbj|BAJ42866.1| flagellar basal body rod modification protein [Escherichia coli DH1] gi|315618245|gb|EFU98835.1| basal-body rod modification protein flgD [Escherichia coli 3431] gi|323156882|gb|EFZ43016.1| basal-body rod modification protein flgD [Escherichia coli EPECa14] gi|323165583|gb|EFZ51370.1| basal-body rod modification protein flgD [Shigella sonnei 53G] gi|323185802|gb|EFZ71163.1| basal-body rod modification protein flgD [Escherichia coli 1357] gi|323937815|gb|EGB34079.1| flagellar hook capping protein [Escherichia coli E1520] gi|323942544|gb|EGB38711.1| flagellar hook capping protein [Escherichia coli E482] gi|324017421|gb|EGB86640.1| flagellar hook capping protein [Escherichia coli MS 117-3] gi|324117354|gb|EGC11261.1| flagellar hook capping protein [Escherichia coli E1167] gi|331050406|gb|EGI22464.1| basal-body rod modification protein FlgD [Escherichia coli M718] gi|331065060|gb|EGI36955.1| basal-body rod modification protein FlgD [Escherichia coli TA271] gi|331075555|gb|EGI46853.1| basal-body rod modification protein FlgD [Escherichia coli H591] gi|332102089|gb|EGJ05435.1| flagellar hook protein FlgE [Shigella sp. D9] gi|332342621|gb|AEE55955.1| flagellar basal-body rod modification protein FlgD [Escherichia coli UMNK88] gi|333008277|gb|EGK27751.1| basal-body rod modification protein flgD [Shigella flexneri K-272] gi|333019767|gb|EGK39039.1| basal-body rod modification protein flgD [Shigella flexneri K-227] Length = 231 Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNITNADGSI 97 AS+ IG + ++ Sbjct: 92 ASNLIGHGVMIPGTTV 107 >gi|157373208|ref|YP_001471808.1| flagellar hook capping protein [Shewanella sediminis HAW-EB3] gi|157315582|gb|ABV34680.1| flagellar hook capping protein [Shewanella sediminis HAW-EB3] Length = 221 Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 15/116 (12%) Query: 1 MEINTEVNPTQQEFSK-----SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55 M +N+ N + + + + ++ F+ L+I QI++QDPT P+ ++E V QLA Sbjct: 1 MNVNSTTNSSGNDNTSDVMNSPGNDAASIKNEFMTLMIAQIQNQDPTNPIDSTEYVTQLA 60 Query: 56 VFSQMEQSVQM---NSTLQELLKSNNLAQASSYIGK-------NITNADGSISGVV 101 FSQ+E QM ST ++++ + Q++ IGK +T ++ G V Sbjct: 61 QFSQVESLEQMRLNQSTQMVMMENLGIVQSAQLIGKDAMVPASEVTLDTETVHGKV 116 >gi|332759649|gb|EGJ89954.1| basal-body rod modification protein flgD [Shigella flexneri 2747-71] Length = 231 Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNITNADGSI 97 AS+ IG + ++ Sbjct: 92 ASNLIGHGVMIPGTTV 107 >gi|15830707|ref|NP_309480.1| flagellar basal body rod modification protein [Escherichia coli O157:H7 str. Sakai] gi|91210227|ref|YP_540213.1| flagellar basal body rod modification protein [Escherichia coli UTI89] gi|110641251|ref|YP_668981.1| flagellar basal body rod modification protein [Escherichia coli 536] gi|117623261|ref|YP_852174.1| flagellar basal body rod modification protein [Escherichia coli APEC O1] gi|157160602|ref|YP_001457920.1| flagellar basal body rod modification protein [Escherichia coli HS] gi|168747149|ref|ZP_02772171.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC4113] gi|168758632|ref|ZP_02783639.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC4401] gi|168764487|ref|ZP_02789494.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC4501] gi|168767734|ref|ZP_02792741.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC4486] gi|168773920|ref|ZP_02798927.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC4196] gi|168783605|ref|ZP_02808612.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC4076] gi|168802020|ref|ZP_02827027.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC508] gi|170020529|ref|YP_001725483.1| flagellar basal body rod modification protein [Escherichia coli ATCC 8739] gi|191172470|ref|ZP_03034011.1| flagellar hook capping protein FlgD [Escherichia coli F11] gi|195935465|ref|ZP_03080847.1| flagellar basal body rod modification protein [Escherichia coli O157:H7 str. EC4024] gi|208809154|ref|ZP_03251491.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC4206] gi|208815597|ref|ZP_03256776.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC4045] gi|208822404|ref|ZP_03262723.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC4042] gi|209396598|ref|YP_002269921.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC4115] gi|215486284|ref|YP_002328715.1| flagellar basal body rod modification protein [Escherichia coli O127:H6 str. E2348/69] gi|217328509|ref|ZP_03444591.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. TW14588] gi|218557957|ref|YP_002390870.1| flagellar basal body rod modification protein [Escherichia coli S88] gi|237706939|ref|ZP_04537420.1| flagellar hook protein FlgE [Escherichia sp. 3_2_53FAA] gi|254792457|ref|YP_003077294.1| flagellar basal body rod modification protein [Escherichia coli O157:H7 str. TW14359] gi|291282095|ref|YP_003498913.1| Flagellar hook protein FlgE [Escherichia coli O55:H7 str. CB9615] gi|300902466|ref|ZP_07120448.1| flagellar hook capping protein [Escherichia coli MS 84-1] gi|300982622|ref|ZP_07176206.1| flagellar hook capping protein [Escherichia coli MS 200-1] gi|301023262|ref|ZP_07187059.1| flagellar hook capping protein [Escherichia coli MS 69-1] gi|301304986|ref|ZP_07211088.1| flagellar hook capping protein [Escherichia coli MS 124-1] gi|307310147|ref|ZP_07589797.1| flagellar hook capping protein [Escherichia coli W] gi|312971212|ref|ZP_07785390.1| basal-body rod modification protein flgD [Escherichia coli 1827-70] gi|331657137|ref|ZP_08358099.1| basal-body rod modification protein FlgD [Escherichia coli TA206] gi|331662481|ref|ZP_08363404.1| basal-body rod modification protein FlgD [Escherichia coli TA143] gi|13360917|dbj|BAB34876.1| flagellar biosynthesis FlgD protein [Escherichia coli O157:H7 str. Sakai] gi|91071801|gb|ABE06682.1| flagellar hook formation protein FlgD [Escherichia coli UTI89] gi|110342843|gb|ABG69080.1| basal-body rod modification protein FlgD [Escherichia coli 536] gi|115512385|gb|ABJ00460.1| flagellar hook formation protein FlgD [Escherichia coli APEC O1] gi|157066282|gb|ABV05537.1| flagellar hook capping protein FlgD [Escherichia coli HS] gi|169755457|gb|ACA78156.1| flagellar hook capping protein [Escherichia coli ATCC 8739] gi|187770545|gb|EDU34389.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC4196] gi|188018077|gb|EDU56199.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC4113] gi|188999082|gb|EDU68068.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC4076] gi|189354575|gb|EDU72994.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC4401] gi|189363218|gb|EDU81637.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC4486] gi|189365529|gb|EDU83945.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC4501] gi|189375919|gb|EDU94335.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC508] gi|190907354|gb|EDV66952.1| flagellar hook capping protein FlgD [Escherichia coli F11] gi|208728955|gb|EDZ78556.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC4206] gi|208732245|gb|EDZ80933.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC4045] gi|208737889|gb|EDZ85572.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC4042] gi|209157998|gb|ACI35431.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC4115] gi|209773388|gb|ACI85006.1| flagellar biosynthesis FlgD protein [Escherichia coli] gi|209773390|gb|ACI85007.1| flagellar biosynthesis FlgD protein [Escherichia coli] gi|209773392|gb|ACI85008.1| flagellar biosynthesis FlgD protein [Escherichia coli] gi|209773394|gb|ACI85009.1| flagellar biosynthesis FlgD protein [Escherichia coli] gi|209773396|gb|ACI85010.1| flagellar biosynthesis FlgD protein [Escherichia coli] gi|215264356|emb|CAS08713.1| flagellar hook assembly protein [Escherichia coli O127:H6 str. E2348/69] gi|217318936|gb|EEC27362.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. TW14588] gi|218364726|emb|CAR02416.1| flagellar hook assembly protein [Escherichia coli S88] gi|226898149|gb|EEH84408.1| flagellar hook protein FlgE [Escherichia sp. 3_2_53FAA] gi|254591857|gb|ACT71218.1| flagellar hook assembly protein [Escherichia coli O157:H7 str. TW14359] gi|281178184|dbj|BAI54514.1| flagellar hook formation protein FlgD [Escherichia coli SE15] gi|284920898|emb|CBG33961.1| basal-body rod modification protein FlgD [Escherichia coli 042] gi|290761968|gb|ADD55929.1| Flagellar hook protein FlgE [Escherichia coli O55:H7 str. CB9615] gi|294491980|gb|ADE90736.1| Flagellar hook capping protein [Escherichia coli IHE3034] gi|300307087|gb|EFJ61607.1| flagellar hook capping protein [Escherichia coli MS 200-1] gi|300397107|gb|EFJ80645.1| flagellar hook capping protein [Escherichia coli MS 69-1] gi|300405498|gb|EFJ89036.1| flagellar hook capping protein [Escherichia coli MS 84-1] gi|300839704|gb|EFK67464.1| flagellar hook capping protein [Escherichia coli MS 124-1] gi|306909865|gb|EFN40359.1| flagellar hook capping protein [Escherichia coli W] gi|307627455|gb|ADN71759.1| flagellar basal body rod modification protein [Escherichia coli UM146] gi|310336414|gb|EFQ01600.1| basal-body rod modification protein flgD [Escherichia coli 1827-70] gi|315060353|gb|ADT74680.1| flagellar hook assembly protein [Escherichia coli W] gi|315253876|gb|EFU33844.1| flagellar hook capping protein [Escherichia coli MS 85-1] gi|315287370|gb|EFU46781.1| flagellar hook capping protein [Escherichia coli MS 110-3] gi|315296706|gb|EFU56001.1| flagellar hook capping protein [Escherichia coli MS 16-3] gi|320179225|gb|EFW54183.1| Flagellar basal-body rod modification protein FlgD [Shigella boydii ATCC 9905] gi|320189758|gb|EFW64414.1| Flagellar basal-body rod modification protein FlgD [Escherichia coli O157:H7 str. EC1212] gi|320196443|gb|EFW71066.1| Flagellar basal-body rod modification protein FlgD [Escherichia coli WV_060327] gi|320200971|gb|EFW75555.1| Flagellar basal-body rod modification protein FlgD [Escherichia coli EC4100B] gi|320637526|gb|EFX07326.1| flagellar basal body rod modification protein [Escherichia coli O157:H7 str. G5101] gi|320643087|gb|EFX12288.1| flagellar basal body rod modification protein [Escherichia coli O157:H- str. 493-89] gi|320648545|gb|EFX17200.1| flagellar basal body rod modification protein [Escherichia coli O157:H- str. H 2687] gi|320653859|gb|EFX21933.1| flagellar basal body rod modification protein [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320659339|gb|EFX26908.1| flagellar basal body rod modification protein [Escherichia coli O55:H7 str. USDA 5905] gi|320664474|gb|EFX31625.1| flagellar basal body rod modification protein [Escherichia coli O157:H7 str. LSU-61] gi|323174796|gb|EFZ60411.1| basal-body rod modification protein flgD [Escherichia coli LT-68] gi|323379086|gb|ADX51354.1| flagellar hook capping protein [Escherichia coli KO11] gi|323953239|gb|EGB49105.1| flagellar hook capping protein [Escherichia coli H252] gi|323957899|gb|EGB53611.1| flagellar hook capping protein [Escherichia coli H263] gi|324007915|gb|EGB77134.1| flagellar hook capping protein [Escherichia coli MS 57-2] gi|324013349|gb|EGB82568.1| flagellar hook capping protein [Escherichia coli MS 60-1] gi|326339297|gb|EGD63111.1| Flagellar basal-body rod modification protein FlgD [Escherichia coli O157:H7 str. 1125] gi|326344742|gb|EGD68490.1| Flagellar basal-body rod modification protein FlgD [Escherichia coli O157:H7 str. 1044] gi|331055385|gb|EGI27394.1| basal-body rod modification protein FlgD [Escherichia coli TA206] gi|331060903|gb|EGI32867.1| basal-body rod modification protein FlgD [Escherichia coli TA143] gi|332088751|gb|EGI93863.1| basal-body rod modification protein flgD [Shigella boydii 5216-82] Length = 231 Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNITNADGSI 97 AS+ IG + ++ Sbjct: 92 ASNLIGHGVMIPGTTV 107 >gi|331646333|ref|ZP_08347436.1| basal-body rod modification protein FlgD [Escherichia coli M605] gi|330910889|gb|EGH39399.1| flagellar basal-body rod modification protein FlgD [Escherichia coli AA86] gi|331045085|gb|EGI17212.1| basal-body rod modification protein FlgD [Escherichia coli M605] Length = 231 Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNITNADGSI 97 AS+ IG + ++ Sbjct: 92 ASNLIGHGVMIPGTTV 107 >gi|168790010|ref|ZP_02815017.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC869] gi|261227020|ref|ZP_05941301.1| flagellar basal body rod modification protein [Escherichia coli O157:H7 str. FRIK2000] gi|261256254|ref|ZP_05948787.1| flagellar basal body rod modification protein [Escherichia coli O157:H7 str. FRIK966] gi|189370461|gb|EDU88877.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC869] Length = 231 Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNITNADGSI 97 AS+ IG + ++ Sbjct: 92 ASNLIGHGVMIPGTTV 107 >gi|74311637|ref|YP_310056.1| flagellar basal body rod modification protein [Shigella sonnei Ss046] gi|73855114|gb|AAZ87821.1| flagellar protein for initiation of hook assembly [Shigella sonnei Ss046] Length = 231 Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNITNADGSI 97 AS+ IG + ++ Sbjct: 92 ASNLIGHGVMIPGTTV 107 >gi|187732739|ref|YP_001880753.1| flagellar basal body rod modification protein [Shigella boydii CDC 3083-94] gi|187429731|gb|ACD09005.1| flagellar hook capping protein FlgD [Shigella boydii CDC 3083-94] gi|320173528|gb|EFW48724.1| Flagellar basal-body rod modification protein FlgD [Shigella dysenteriae CDC 74-1112] Length = 231 Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNITNADGSI 97 AS+ IG + ++ Sbjct: 92 ASNLIGHGVMIPGTTV 107 >gi|325982372|ref|YP_004294774.1| flagellar hook capping protein [Nitrosomonas sp. AL212] gi|325531891|gb|ADZ26612.1| flagellar hook capping protein [Nitrosomonas sp. AL212] Length = 222 Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 36/101 (35%), Positives = 57/101 (56%), Gaps = 7/101 (6%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75 K+K QD FLKLLITQ+K+QDP +P+ +E +QLA S + ++NSTLQ+L+ Sbjct: 21 KTKKDAENPQDRFLKLLITQMKNQDPLKPLDNAEVTSQLAQISTVTGIDKLNSTLQQLVS 80 Query: 76 SNN---LAQASSYIGKNITNADGSIS----GVVNAIQVSST 109 S + +A IG + SI+ G + I+++ + Sbjct: 81 SADDGRSIEALEMIGHSAYVPGKSITLEGEGAIAGIELAQS 121 >gi|329890334|ref|ZP_08268677.1| flagellar hook capping family protein [Brevundimonas diminuta ATCC 11568] gi|328845635|gb|EGF95199.1| flagellar hook capping family protein [Brevundimonas diminuta ATCC 11568] Length = 246 Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 3/70 (4%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN---LAQA 82 FL LL TQ+K+QDP P+ ++E AQL + +EQ + N L LLK+ L A Sbjct: 26 QTFLSLLTTQLKNQDPLSPVDSNEFTAQLTQMAGVEQQLLTNDLLTGLLKAQQGDGLTGA 85 Query: 83 SSYIGKNITN 92 + YIGK+ T Sbjct: 86 AQYIGKDATA 95 >gi|218704483|ref|YP_002412002.1| flagellar basal body rod modification protein [Escherichia coli UMN026] gi|293404359|ref|ZP_06648353.1| basal-body rod modification protein flgD [Escherichia coli FVEC1412] gi|298380139|ref|ZP_06989744.1| basal-body rod modification protein flgD [Escherichia coli FVEC1302] gi|300899594|ref|ZP_07117833.1| flagellar hook capping protein [Escherichia coli MS 198-1] gi|331672595|ref|ZP_08373384.1| basal-body rod modification protein FlgD [Escherichia coli TA280] gi|331682577|ref|ZP_08383196.1| basal-body rod modification protein FlgD [Escherichia coli H299] gi|218431580|emb|CAR12459.1| flagellar hook assembly protein [Escherichia coli UMN026] gi|291428945|gb|EFF01970.1| basal-body rod modification protein flgD [Escherichia coli FVEC1412] gi|298279837|gb|EFI21345.1| basal-body rod modification protein flgD [Escherichia coli FVEC1302] gi|300356865|gb|EFJ72735.1| flagellar hook capping protein [Escherichia coli MS 198-1] gi|331070238|gb|EGI41604.1| basal-body rod modification protein FlgD [Escherichia coli TA280] gi|331080208|gb|EGI51387.1| basal-body rod modification protein FlgD [Escherichia coli H299] Length = 231 Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNITNADGSI 97 AS+ IG + ++ Sbjct: 92 ASNLIGHGVMIPGTTV 107 >gi|194432371|ref|ZP_03064658.1| flagellar hook capping protein FlgD [Shigella dysenteriae 1012] gi|194419258|gb|EDX35340.1| flagellar hook capping protein FlgD [Shigella dysenteriae 1012] gi|332092821|gb|EGI97889.1| basal-body rod modification protein flgD [Shigella dysenteriae 155-74] Length = 231 Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNITNADGSI 97 AS+ IG + ++ Sbjct: 92 ASNLIGHGVMLPGTTV 107 >gi|167623360|ref|YP_001673654.1| flagellar basal body rod modification protein [Shewanella halifaxensis HAW-EB4] gi|167353382|gb|ABZ75995.1| flagellar hook capping protein [Shewanella halifaxensis HAW-EB4] Length = 267 Score = 76.1 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 3/91 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS-- 68 Q+ + + L Q+ F LL Q+ QDP +P+ + + Q+A FS ++ ++N Sbjct: 56 QESSIPEPNSQELSQEDFFSLLSQQLSMQDPFKPVDNDQMIQQMASFSTVDGISKLNEEI 115 Query: 69 -TLQELLKSNNLAQASSYIGKNITNADGSIS 98 L L S+ QAS +G+ + + Sbjct: 116 GNLNALTSSSQALQASGLVGQKVLIPSDTAH 146 >gi|170682037|ref|YP_001744105.1| flagellar basal body rod modification protein [Escherichia coli SMS-3-5] gi|170519755|gb|ACB17933.1| flagellar hook capping protein FlgD [Escherichia coli SMS-3-5] Length = 231 Score = 76.1 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNITNADGSI 97 AS+ IG + ++ Sbjct: 92 ASNLIGHGVMIPGTTV 107 >gi|218700422|ref|YP_002408051.1| flagellar basal body rod modification protein [Escherichia coli IAI39] gi|300938640|ref|ZP_07153369.1| flagellar hook capping protein [Escherichia coli MS 21-1] gi|218370408|emb|CAR18215.1| flagellar hook assembly protein [Escherichia coli IAI39] gi|300456425|gb|EFK19918.1| flagellar hook capping protein [Escherichia coli MS 21-1] Length = 231 Score = 76.1 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNITNADGSI 97 AS+ IG + ++ Sbjct: 92 ASNLIGHGVMIPGTTV 107 >gi|293409441|ref|ZP_06653017.1| basal-body rod modification protein flgD [Escherichia coli B354] gi|291469909|gb|EFF12393.1| basal-body rod modification protein flgD [Escherichia coli B354] Length = 231 Score = 76.1 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNITNADGSI 97 AS+ IG + ++ Sbjct: 92 ASNLIGHGVMIPGTTV 107 >gi|26247215|ref|NP_753255.1| flagellar basal body rod modification protein [Escherichia coli CFT073] gi|227886567|ref|ZP_04004372.1| flagellar basal body rod modification protein [Escherichia coli 83972] gi|300974379|ref|ZP_07172591.1| flagellar hook capping protein [Escherichia coli MS 45-1] gi|301051141|ref|ZP_07197971.1| flagellar hook capping protein [Escherichia coli MS 185-1] gi|26107616|gb|AAN79815.1|AE016759_89 Basal-body rod modification protein flgD [Escherichia coli CFT073] gi|227836771|gb|EEJ47237.1| flagellar basal body rod modification protein [Escherichia coli 83972] gi|300297162|gb|EFJ53547.1| flagellar hook capping protein [Escherichia coli MS 185-1] gi|300410622|gb|EFJ94160.1| flagellar hook capping protein [Escherichia coli MS 45-1] gi|307553077|gb|ADN45852.1| flagellar hook capping protein FlgD [Escherichia coli ABU 83972] gi|315291069|gb|EFU50432.1| flagellar hook capping protein [Escherichia coli MS 153-1] Length = 231 Score = 76.1 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNITNADGSI 97 AS+ IG + ++ Sbjct: 92 ASNLIGHGVMIPGTTV 107 >gi|163744353|ref|ZP_02151713.1| Flagellar hook capping protein [Oceanibulbus indolifex HEL-45] gi|161381171|gb|EDQ05580.1| Flagellar hook capping protein [Oceanibulbus indolifex HEL-45] Length = 222 Score = 76.1 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 45/76 (59%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS 84 ++FL LL QI +QDP P+ +++ V+QLA +Q+EQS+ N++L+++ + A S Sbjct: 29 YNSFLTLLTAQISNQDPLNPVDSTQFVSQLAQLTQVEQSIATNASLEQISTMLSTVGAMS 88 Query: 85 ---YIGKNITNADGSI 97 IG+++ + Sbjct: 89 DLQLIGRDVLVPSSQV 104 >gi|83747655|ref|ZP_00944691.1| FlgD [Ralstonia solanacearum UW551] gi|207739738|ref|YP_002258131.1| basal-body rod modification protein flgd [Ralstonia solanacearum IPO1609] gi|83725707|gb|EAP72849.1| FlgD [Ralstonia solanacearum UW551] gi|206593120|emb|CAQ60026.1| basal-body rod modification protein flgd [Ralstonia solanacearum IPO1609] Length = 218 Score = 76.1 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 42/66 (63%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS 84 Q+ F++LL+ Q+K+QDP PM S+ +QLA + + Q+N+T+ + + +QASS Sbjct: 30 QNTFMQLLVAQLKNQDPLNPMDNSQLTSQLAQINTVNGIAQLNTTMSSMATQSAASQASS 89 Query: 85 YIGKNI 90 IG+ + Sbjct: 90 LIGRTV 95 >gi|222032828|emb|CAP75567.1| Basal-body rod modification protein flgD [Escherichia coli LF82] gi|312945637|gb|ADR26464.1| flagellar basal body rod modification protein [Escherichia coli O83:H1 str. NRG 857C] Length = 231 Score = 76.1 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNITNADGSI 97 AS+ IG + ++ Sbjct: 92 ASNLIGHGVMIPGTTV 107 >gi|218689028|ref|YP_002397240.1| flagellar basal body rod modification protein [Escherichia coli ED1a] gi|306814076|ref|ZP_07448249.1| flagellar basal body rod modification protein [Escherichia coli NC101] gi|218426592|emb|CAR07420.1| flagellar hook assembly protein [Escherichia coli ED1a] gi|305852713|gb|EFM53161.1| flagellar basal body rod modification protein [Escherichia coli NC101] Length = 231 Score = 76.1 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNITNADGSI 97 AS+ IG + ++ Sbjct: 92 ASNLIGHGVMIPGTTV 107 >gi|254456986|ref|ZP_05070414.1| flagellar hook capping protein [Campylobacterales bacterium GD 1] gi|207085778|gb|EDZ63062.1| flagellar hook capping protein [Campylobacterales bacterium GD 1] Length = 221 Score = 76.1 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 3/99 (3%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 +N N + + K LG+D F+ LL+ +++HQDPTEPM + + + Q + + +E Sbjct: 8 LNAATNVDTVASTAAVDKTVLGKDDFMTLLLVELQHQDPTEPMDSEKILTQTSQLAGLES 67 Query: 63 SVQMNSTLQELLKSNNLAQ---ASSYIGKNITNADGSIS 98 + N L+ L S + +Q + S IGK +I+ Sbjct: 68 AENTNKALESLAASLSASQNFSSISAIGKTADLGSNAIA 106 >gi|296102909|ref|YP_003613055.1| flagellar basal-body rod modification protein FlgD [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057368|gb|ADF62106.1| flagellar basal-body rod modification protein FlgD [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 236 Score = 76.1 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E QLA S + ++N+TL + + ++ Q Sbjct: 36 QSSFLTLLVAQLKNQDPTNPMQNNELTTQLAQISTVSGIEKLNTTLGSVSGQIDNSQSLQ 95 Query: 82 ASSYIGKNITNADGSI 97 A+S IG + +I Sbjct: 96 AASLIGHGVMIPGTTI 111 >gi|304397203|ref|ZP_07379082.1| flagellar hook capping protein [Pantoea sp. aB] gi|304355352|gb|EFM19720.1| flagellar hook capping protein [Pantoea sp. aB] Length = 224 Score = 76.1 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 30/101 (29%), Positives = 54/101 (53%), Gaps = 6/101 (5%) Query: 3 INTEVNPT---QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59 +N +++PT S + + Q+ FL +L+TQ+K+QDPT PM S+ QLA + Sbjct: 7 VNDKLDPTVLSSSNTSGTGNNAQDLQNQFLTMLVTQLKNQDPTNPMDNSQLTTQLAQINT 66 Query: 60 MEQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 + ++N+TL + + ++ Q+S+ IG + G I Sbjct: 67 LSGIEKLNTTLGSISGQINTSQSLQSSTLIGHGVMVNGGQI 107 >gi|323190587|gb|EFZ75859.1| basal-body rod modification protein flgD [Escherichia coli RN587/1] Length = 231 Score = 76.1 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNITNADGSI 97 AS+ IG + ++ Sbjct: 92 ASNLIGHGVMIPGTTV 107 >gi|283955453|ref|ZP_06372951.1| flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni 414] gi|283793080|gb|EFC31851.1| flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni 414] Length = 286 Score = 76.1 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 10/90 (11%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78 TL +DAFLKLL+ +++HQDPT+PM + + + Q + S +E N T+Q+++++ Sbjct: 39 PNATLDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNITMQKMVETME 98 Query: 79 LAQ----------ASSYIGKNITNADGSIS 98 A IGK T + + Sbjct: 99 KLSNSFSTSMSTAAVGAIGKMATVNENKVK 128 >gi|251789167|ref|YP_003003888.1| flagellar basal body rod modification protein [Dickeya zeae Ech1591] gi|247537788|gb|ACT06409.1| flagellar hook capping protein [Dickeya zeae Ech1591] Length = 223 Score = 76.1 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q++FL LL+ Q+K+QDPT PM ++ V+QLA + + ++N+TL + + SN Q Sbjct: 31 QNSFLTLLVAQLKNQDPTNPMDNNQLVSQLAQLNTVSGIEKLNTTLGSISTQINSNQSVQ 90 Query: 82 ASSYIGKNITNADGSI 97 A+S IG + ++ Sbjct: 91 AASLIGHGVLVPGSTV 106 >gi|332533176|ref|ZP_08409045.1| flagellar basal-body rod modification protein FlgD [Pseudoalteromonas haloplanktis ANT/505] gi|332037458|gb|EGI73912.1| flagellar basal-body rod modification protein FlgD [Pseudoalteromonas haloplanktis ANT/505] Length = 226 Score = 76.1 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 3/90 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 QQ + L Q+ F LL Q+ +QDP+ P + +AQ+ F+ + +N+ Sbjct: 20 QQVATSDNESDALTQEDFFSLLTQQLSYQDPSNPADNDQMIAQMTSFTMAQGITDLNTNF 79 Query: 71 QEL---LKSNNLAQASSYIGKNITNADGSI 97 + L + SN+ QAS+ +GK ++ Sbjct: 80 ESLASSMTSNSALQASTLVGKQALLESNTL 109 >gi|300696912|ref|YP_003747573.1| flagellar hook assembly protein, basal-body rod modification [Ralstonia solanacearum CFBP2957] gi|299073636|emb|CBJ53156.1| flagellar hook assembly protein, basal-body rod modification [Ralstonia solanacearum CFBP2957] Length = 218 Score = 76.1 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 25/66 (37%), Positives = 42/66 (63%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS 84 Q+ F++LL+ Q+K+QDP PM S+ +QLA + + Q+N+TL + + +QASS Sbjct: 30 QNTFMQLLVAQLKNQDPLNPMDNSQLTSQLAQINTVNGISQLNTTLSSMATQSAASQASS 89 Query: 85 YIGKNI 90 IG+ + Sbjct: 90 LIGRTV 95 >gi|254463880|ref|ZP_05077291.1| flagellar hook capping protein [Rhodobacterales bacterium Y4I] gi|206684788|gb|EDZ45270.1| flagellar hook capping protein [Rhodobacterales bacterium Y4I] Length = 225 Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 27/81 (33%), Positives = 42/81 (51%) Query: 7 VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66 Q ++ S T + F+K+L Q +QDP EP+ ++E AQLA FS +EQ + Sbjct: 14 HTSQQPAATQKTSGLTSDFETFVKMLTAQATNQDPLEPLDSTEYAAQLAQFSMVEQQTKS 73 Query: 67 NSTLQELLKSNNLAQASSYIG 87 N+ L+ L LA ++ G Sbjct: 74 NTLLEGLQSQLGLANMAALSG 94 >gi|116694218|ref|YP_728429.1| flagellar basal body rod modification protein [Ralstonia eutropha H16] gi|113528717|emb|CAJ95064.1| flagellar basal body rod modification protein [Ralstonia eutropha H16] Length = 221 Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 3/99 (3%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 + + + + Q+ FL +L+TQ+ +QDP PM ++ +QLA S + Sbjct: 7 VGSNTQGINDALKSGSASASELQNNFLTMLVTQMNNQDPLNPMDNAQLTSQLAQISTVSG 66 Query: 63 SVQMNSTLQELLKSNNLAQA---SSYIGKNITNADGSIS 98 MN+TL +LL + ++A ++ IG + +S Sbjct: 67 MQTMNATLSQLLSQVSASRAMDSAALIGHTVMVPGKQVS 105 >gi|94495412|ref|ZP_01301992.1| flagellar scaffolding protein [Sphingomonas sp. SKA58] gi|94424800|gb|EAT09821.1| flagellar scaffolding protein [Sphingomonas sp. SKA58] Length = 219 Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 12/120 (10%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 + T+ Q +FLKLL Q+++QDP EP+ +E V+Q+A + +MN+ L Sbjct: 17 NPNATVGTGSATMDQASFLKLLTAQMQYQDPFEPVDNAEMVSQMATITNSSGIAEMNANL 76 Query: 71 QEL---LKSNNLAQASSYIGKN--------ITNADGSISGVVNAIQVSSTGLTAITVDNT 119 + L L A+S+IGK+ + +A G +G V + ++ G T VD + Sbjct: 77 ASIKQELTGTRLGDAASWIGKSMLVQSNVAVPDASGYYAGQV-SFADATNGATVDLVDGS 135 >gi|292489134|ref|YP_003532021.1| basal-body rod modification protein FlgD [Erwinia amylovora CFBP1430] gi|292900253|ref|YP_003539622.1| basal-body rod modification protein [Erwinia amylovora ATCC 49946] gi|291200101|emb|CBJ47227.1| basal-body rod modification protein [Erwinia amylovora ATCC 49946] gi|291554568|emb|CBA22182.1| Basal-body rod modification protein flgD [Erwinia amylovora CFBP1430] gi|312173292|emb|CBX81547.1| Basal-body rod modification protein flgD [Erwinia amylovora ATCC BAA-2158] Length = 226 Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 4/94 (4%) Query: 5 TEVNPTQQEFSKSKSKKTLG-QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 + VN T+ +F+ LLI Q+++QDPT PM ++ +QLA F+ Sbjct: 4 SPVNNTRGPGQVDMGSSAADLSGSFMTLLIAQMQNQDPTNPMDNNQLTSQLAQFNTASGV 63 Query: 64 VQMNST---LQELLKSNNLAQASSYIGKNITNAD 94 ++N + + +L A+S++G+ + A Sbjct: 64 EKLNDSVAIVGGMLVQMQEMGATSWVGREVMIAG 97 >gi|193064562|ref|ZP_03045642.1| flagellar hook capping protein FlgD [Escherichia coli E22] gi|194428429|ref|ZP_03060969.1| flagellar hook capping protein FlgD [Escherichia coli B171] gi|260843315|ref|YP_003221093.1| flagellar hook assembly protein FlgD [Escherichia coli O103:H2 str. 12009] gi|192927814|gb|EDV82428.1| flagellar hook capping protein FlgD [Escherichia coli E22] gi|194413481|gb|EDX29763.1| flagellar hook capping protein FlgD [Escherichia coli B171] gi|257758462|dbj|BAI29959.1| flagellar hook assembly protein FlgD [Escherichia coli O103:H2 str. 12009] gi|323163757|gb|EFZ49576.1| basal-body rod modification protein flgD [Escherichia coli E128010] Length = 231 Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNITNADGSI 97 AS+ IG + ++ Sbjct: 92 ASNLIGHGVMIHGTTV 107 >gi|120598231|ref|YP_962805.1| flagellar basal body rod modification protein [Shewanella sp. W3-18-1] gi|120558324|gb|ABM24251.1| flagellar hook capping protein [Shewanella sp. W3-18-1] Length = 253 Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 59/110 (53%), Gaps = 6/110 (5%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 PT+ ++KS++ L Q+ F LL Q+ QDP +P+ + +AQ+A FS ++ ++N Sbjct: 41 PTESIVPEAKSQQ-LTQEDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGISKLNK 99 Query: 69 ---TLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAIT 115 L ++ S+ QA+ +G+ + + +G V++ S G+ + T Sbjct: 100 EIVNLNSVMTSSQALQATGLVGRKVLLP--TDTGYVSSENPSMKGVISTT 147 >gi|294679045|ref|YP_003579660.1| flagellar hook capping protein [Rhodobacter capsulatus SB 1003] gi|294477865|gb|ADE87253.1| flagellar hook capping protein [Rhodobacter capsulatus SB 1003] Length = 225 Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 3/110 (2%) Query: 24 GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLA 80 FLKLL TQ+ +QDPT PM +++ QLA FSQ+EQ V+ N+ L L + ++ Sbjct: 32 DYQMFLKLLTTQMTNQDPTSPMDSADYAVQLATFSQVEQQVKTNTLLTSLATQMGVMGMS 91 Query: 81 QASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 + ++++G + N + +S + + G +S Sbjct: 92 EYANWVGMEARSESPGYFDGTNPVTISPNPVKGADATTVVVSDAAGNEVS 141 >gi|167770212|ref|ZP_02442265.1| hypothetical protein ANACOL_01555 [Anaerotruncus colihominis DSM 17241] gi|167667534|gb|EDS11664.1| hypothetical protein ANACOL_01555 [Anaerotruncus colihominis DSM 17241] Length = 249 Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 55/113 (48%), Gaps = 15/113 (13%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSY 85 D FL L++ Q+++QD P+ ++ V QLA F+ M Q ++ + ++ A S Sbjct: 53 DDFLSLMVAQLQNQDFMNPVDDTQYVTQLAQFATMSQMQELAANMKN-------NYALSL 105 Query: 86 IGKNITNADGSISGV-------VNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 +G N+T A ++SG ++ + + ITV+ ++ + I+N Sbjct: 106 VGTNVTAAKFAVSGALIKETGPISKVSLVDN-SYQITVNGQTFSLSEIMEINN 157 Score = 34.5 bits (78), Expect = 5.3, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 32/81 (39%), Gaps = 4/81 (4%) Query: 53 QLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNIT--NADGSISGVVNAIQVSSTG 110 Q S++ + S+ K++ A S IGKN+T + +I+G+V I Sbjct: 145 QTFSLSEIMEINNSESSGSTNNKNDQTAYLVSLIGKNVTVKHDGDTITGIVEEISTEDG- 203 Query: 111 LTAITVDNTEIPITTGIRISN 131 + +D + + + Sbjct: 204 -YKLMIDGEWYSLDEVTGVGS 223 >gi|77918789|ref|YP_356604.1| flagellar hook initiation protein FlgD [Pelobacter carbinolicus DSM 2380] gi|77544872|gb|ABA88434.1| flagellar hook initiation protein FlgD [Pelobacter carbinolicus DSM 2380] Length = 218 Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 3/98 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 + + LG+D FL LL+TQ+++QDP P +E +QLA +S +EQ Sbjct: 6 DVNQTASSSMTGSLTGSSNLGKDDFLLLLVTQLQNQDPLNPQDPTEFTSQLAQYSSLEQL 65 Query: 64 VQMNSTLQELLKSNNL---AQASSYIGKNITNADGSIS 98 +N LQ+L +N A +G+++ S Sbjct: 66 FTVNDQLQQLETTNGNVVQMTALGLMGQDVVVQSDSFK 103 >gi|261339375|ref|ZP_05967233.1| basal-body rod modification protein FlgD [Enterobacter cancerogenus ATCC 35316] gi|288318176|gb|EFC57114.1| basal-body rod modification protein FlgD [Enterobacter cancerogenus ATCC 35316] Length = 236 Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 3/83 (3%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---L 74 S + Q +FL LL+ Q+K+QDPT PM+ +E QLA S + ++N+TL + + Sbjct: 29 GSNASDLQSSFLTLLVAQLKNQDPTNPMQNNELTTQLAQISTVSGIEKLNTTLGSVSGQI 88 Query: 75 KSNNLAQASSYIGKNITNADGSI 97 S+ QA++ IG + +I Sbjct: 89 DSSQSLQAANLIGHGVMIPGTTI 111 >gi|283955492|ref|ZP_06372987.1| flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni 1336] gi|283792953|gb|EFC31727.1| flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni 1336] Length = 292 Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 10/90 (11%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78 TL +DAFLKLL+ +++HQDPT+PM + + + Q + S +E N+T+Q+++++ Sbjct: 43 PNATLDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVETME 102 Query: 79 LAQ----------ASSYIGKNITNADGSIS 98 A IGK T + + Sbjct: 103 KLSNSFSTSMSTAAVGAIGKMATVNENKVK 132 >gi|28900121|ref|NP_799776.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus RIMD 2210633] gi|153837050|ref|ZP_01989717.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus AQ3810] gi|260365771|ref|ZP_05778267.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus K5030] gi|260880693|ref|ZP_05893048.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus AN-5034] gi|260897701|ref|ZP_05906197.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus Peru-466] gi|260899388|ref|ZP_05907783.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus AQ4037] gi|1272367|gb|AAA97475.1| LfgD [Vibrio parahaemolyticus] gi|28808404|dbj|BAC61609.1| LfgD [Vibrio parahaemolyticus RIMD 2210633] gi|149749638|gb|EDM60383.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus AQ3810] gi|308086232|gb|EFO35927.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus Peru-466] gi|308091965|gb|EFO41660.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus AN-5034] gi|308109288|gb|EFO46828.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus AQ4037] gi|308114994|gb|EFO52534.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus K5030] gi|328470100|gb|EGF41011.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus 10329] Length = 227 Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 11/120 (9%) Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67 N K+ + Q+ F+ L++ QI++QDP P+ +E V QLA FSQ++ + M+ Sbjct: 22 NSGIAPNPTDKNSASSLQNEFISLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVQSTENMS 81 Query: 68 STLQE---LLKSNNLAQASSYIGKNI-------TNADGSISGVVNAIQVSSTGLTAITVD 117 +Q LL + + + +G+ + DG+ +G + + S +T + D Sbjct: 82 KVMQNSMVLLDNMQVLSTAGLVGQTVYVNSKEFELGDGAQNGKIE-LSHGSNQVTLVVKD 140 >gi|157157345|ref|YP_001462309.1| flagellar basal body rod modification protein [Escherichia coli E24377A] gi|157079375|gb|ABV19083.1| flagellar hook capping protein FlgD [Escherichia coli E24377A] Length = 231 Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNITNADGSI 97 AS+ IG + ++ Sbjct: 92 ASNLIGHGVMILGTTV 107 >gi|254450579|ref|ZP_05064016.1| basal-body rod modification protein FlgD [Octadecabacter antarcticus 238] gi|198264985|gb|EDY89255.1| basal-body rod modification protein FlgD [Octadecabacter antarcticus 238] Length = 226 Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 8/97 (8%) Query: 1 MEINTEVNPTQQEF-----SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55 ME+ + P Q S++ + + FLK+L Q+++QDP P +SE QLA Sbjct: 7 MELTQALTPVSQPAFSPQAEPSETVISSNFETFLKMLTVQMENQDPLNPTDSSEYAQQLA 66 Query: 56 VFSQMEQSVQMNSTLQELLKSNN---LAQASSYIGKN 89 FS +EQ+V N L L+ N +AQ + ++GK Sbjct: 67 TFSGVEQAVLTNDLLSALMVQMNTTGMAQMADWVGKE 103 >gi|85058010|ref|YP_453712.1| flagellar basal-body rod modification protein FlgD [Sodalis glossinidius str. 'morsitans'] gi|84778530|dbj|BAE73307.1| flagellar basal-body rod modification protein FlgD [Sodalis glossinidius str. 'morsitans'] Length = 269 Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 4/91 (4%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS---Q 59 I+ T ++S+ + L D FL++++ QIK+QDPT PM ++ +Q+A Sbjct: 50 ISDSRAATSAMDAQSQGTQEL-MDNFLQMMLAQIKNQDPTNPMDNNQLASQMAQMHVALG 108 Query: 60 MEQSVQMNSTLQELLKSNNLAQASSYIGKNI 90 +E+ + ++ S S+++G+ + Sbjct: 109 VEKLNNTVLGMGNMVNSVQAVNLSNWVGRTV 139 >gi|255598719|ref|XP_002537066.1| Basal-body rod modification protein flgD, putative [Ricinus communis] gi|223517601|gb|EEF25315.1| Basal-body rod modification protein flgD, putative [Ricinus communis] Length = 222 Score = 75.4 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 53/95 (55%), Gaps = 5/95 (5%) Query: 7 VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66 +N S S + +T QD F+ LL+TQ+K+QDP PM ++ +Q+A + + ++ Sbjct: 15 LNSVNTRNSASTTDET--QDRFMTLLVTQMKNQDPLNPMDNAQVTSQMAQLNTVTGINKL 72 Query: 67 NSTLQELLKSNNLA---QASSYIGKNITNADGSIS 98 N T+ L+ S L QA+S IG+N+ +++ Sbjct: 73 NETMSSLIGSVQLGQSYQATSMIGRNVLVEGKTLT 107 >gi|300693337|ref|YP_003749310.1| flagellar hook assembly protein, basal-body rod modification [Ralstonia solanacearum PSI07] gi|299075374|emb|CBJ34669.1| flagellar hook assembly protein, basal-body rod modification [Ralstonia solanacearum PSI07] Length = 218 Score = 75.4 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 42/66 (63%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS 84 Q+ F++LL+ Q+K+QDP PM S+ +QLA + + Q+N+T+ + + +QASS Sbjct: 30 QNTFMQLLVAQLKNQDPLNPMDNSQLTSQLAQINTVNGIAQLNTTMSSMATQSAASQASS 89 Query: 85 YIGKNI 90 IG+ + Sbjct: 90 LIGRTV 95 >gi|157738167|ref|YP_001490851.1| flagellar hook assembly protein FlgD [Arcobacter butzleri RM4018] gi|315636310|ref|ZP_07891560.1| flagellar hook assembly protein FlgD [Arcobacter butzleri JV22] gi|157700021|gb|ABV68181.1| flagellar hook assembly protein FlgD [Arcobacter butzleri RM4018] gi|315479399|gb|EFU70082.1| flagellar hook assembly protein FlgD [Arcobacter butzleri JV22] Length = 226 Score = 75.4 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 3/104 (2%) Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67 + + ++ S S +L + FLKL+I Q+K QDPT+P +++ + S + ++QM Sbjct: 12 DASGNTYTTSVSNDSLTTNDFLKLMIEQLKLQDPTKPYDSAKMLETQMQMSTLNANMQMI 71 Query: 68 STLQEL---LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSS 108 STL+ + + +++ A+ IG +I N + SG + + V S Sbjct: 72 STLESISTAFQQTSISNAAGLIGSSIENGSKNSSGSLKSYYVES 115 >gi|17548565|ref|NP_521905.1| basal-body rod modification protein FlgD [Ralstonia solanacearum GMI1000] gi|17430813|emb|CAD17495.1| probable basal-body rod modification protein flgd [Ralstonia solanacearum GMI1000] Length = 221 Score = 75.4 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 42/66 (63%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS 84 Q+ F++LL+ Q+K+QDP PM S+ +QLA + + Q+N+T+ + + +QASS Sbjct: 33 QNTFMQLLVAQLKNQDPLNPMDNSQLTSQLAQINTVNGIAQLNTTMSSMATQSAASQASS 92 Query: 85 YIGKNI 90 IG+ + Sbjct: 93 LIGRTV 98 >gi|218886712|ref|YP_002436033.1| flagellar hook capping protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757666|gb|ACL08565.1| flagellar hook capping protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 222 Score = 75.4 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 3/88 (3%) Query: 24 GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS---NNLA 80 DAFL+LLI ++++QDPT P +E + Q+A FS +EQ +N T + S +L Sbjct: 24 DSDAFLQLLIAELQNQDPTNPTDNTEMINQIASFSTVEQLSALNDTATSIYDSLTAMSLN 83 Query: 81 QASSYIGKNITNADGSISGVVNAIQVSS 108 A S+IG+++ IS +A V S Sbjct: 84 SAVSFIGQSVLAQGDDISKTDDATTVVS 111 >gi|207728345|ref|YP_002256739.1| basal-body rod modification protein flgd [Ralstonia solanacearum MolK2] gi|206591591|emb|CAQ57203.1| basal-body rod modification protein flgd [Ralstonia solanacearum MolK2] Length = 218 Score = 75.4 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 42/66 (63%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS 84 Q+ F++LL+ Q+K+QDP PM S+ +QLA + + Q+N+T+ + + +QASS Sbjct: 30 QNTFMQLLVAQLKNQDPLNPMDNSQLTSQLAQINTVNGIAQLNTTMSSMATQSAASQASS 89 Query: 85 YIGKNI 90 IG+ + Sbjct: 90 LIGRTV 95 >gi|226944491|ref|YP_002799564.1| flagellar basal body rod modification protein [Azotobacter vinelandii DJ] gi|226719418|gb|ACO78589.1| Flagellar hook capping protein [Azotobacter vinelandii DJ] Length = 222 Score = 75.4 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 44/76 (57%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 ++ F+ LLI Q+++QDP +PM+ +E +QLA + + ++N+TL+ + + Q Sbjct: 29 RENFMTLLIAQLQNQDPLKPMENAELTSQLAQINTLNGIEELNATLEGITGQIDETQALQ 88 Query: 82 ASSYIGKNITNADGSI 97 A++ +G + + + Sbjct: 89 AAALVGHGVLVSGSQV 104 >gi|119384362|ref|YP_915418.1| flagellar basal body rod modification protein [Paracoccus denitrificans PD1222] gi|119374129|gb|ABL69722.1| flagellar hook capping protein [Paracoccus denitrificans PD1222] Length = 221 Score = 75.4 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 10/104 (9%) Query: 1 MEINTE------VNPTQQEFSKSKSKKTLGQ-DAFLKLLITQIKHQDPTEPMKASEQVAQ 53 M++NT Q FS + Q + FLK+L TQIK+QDP PM +++ Q Sbjct: 1 MDMNTSSVTGNVYEGGSQSFSAPSESGSADQFEMFLKMLTTQIKNQDPLNPMNSTDFAVQ 60 Query: 54 LAVFSQMEQSV---QMNSTLQELLKSNNLAQASSYIGKNITNAD 94 LA FS +EQ V + + L + + L Q S++IG+ + Sbjct: 61 LATFSGVEQQVQTNLLLTQLLQNINGGELGQFSNWIGREVRTTS 104 >gi|118593644|ref|ZP_01551020.1| flagellar hook capping protein [Stappia aggregata IAM 12614] gi|118433755|gb|EAV40416.1| flagellar hook capping protein [Stappia aggregata IAM 12614] Length = 219 Score = 75.4 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 3/78 (3%) Query: 24 GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLA 80 + FL +L TQI++QDP +P+ ++E QL +S +EQ+++ N L+E+ L SN Sbjct: 26 DYELFLSILTTQIQNQDPLDPLDSAEYTNQLVQYSSVEQAIKQNQNLEEIIASLTSNQSM 85 Query: 81 QASSYIGKNITNADGSIS 98 SYIG +T + + Sbjct: 86 GYVSYIGNEVTADASTTT 103 >gi|146311245|ref|YP_001176319.1| flagellar basal body rod modification protein [Enterobacter sp. 638] gi|145318121|gb|ABP60268.1| flagellar hook capping protein [Enterobacter sp. 638] Length = 236 Score = 75.4 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E QLA S + ++N+TL + L + Q Sbjct: 36 QGSFLTLLVAQLKNQDPTNPMQNNELTTQLAQISTVSGIEKLNTTLGSVSGQLNDSQSLQ 95 Query: 82 ASSYIGKNITNADGSI 97 AS+ IG + +I Sbjct: 96 ASNLIGHGVMIPGTTI 111 >gi|254462177|ref|ZP_05075593.1| possible FlgD protein [Rhodobacterales bacterium HTCC2083] gi|206678766|gb|EDZ43253.1| possible FlgD protein [Rhodobacteraceae bacterium HTCC2083] Length = 224 Score = 75.4 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 5/89 (5%) Query: 11 QQEFSKSKSKKTLGQD--AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 Q++ ++++ LG D FLK+L Q+++QDP P+ +++ QLA FS +EQ V+ N Sbjct: 17 QRDTNQAQKTAALGSDFETFLKMLTVQMENQDPLNPVDSADYAVQLATFSSVEQQVRTND 76 Query: 69 TLQELLKSNNLAQASS---YIGKNITNAD 94 L L + S ++G ++ + Sbjct: 77 LLSSLAATMASGGVESLGHWVGMDVRAGN 105 >gi|326796598|ref|YP_004314418.1| flagellar hook capping protein [Marinomonas mediterranea MMB-1] gi|326547362|gb|ADZ92582.1| flagellar hook capping protein [Marinomonas mediterranea MMB-1] Length = 236 Score = 75.0 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 33/106 (31%), Positives = 60/106 (56%), Gaps = 9/106 (8%) Query: 24 GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLA 80 ++ F++L I Q+K+QDPT P + + V+Q+A FS +EQ M+ST+ + L S+ Sbjct: 44 DKNVFMELYIAQLKNQDPTAPQETGDMVSQMAEFSSLEQLTDMSSTMTSMSEALVSSQAL 103 Query: 81 QASSYIGKNI------TNADGSISGVVNAIQVSSTGLTAITVDNTE 120 AS+ +GK++ + DGS + A S + T +T+ +++ Sbjct: 104 TASTLVGKSVYVDQDTISYDGSTDAYIKATIPSDSSATTVTITDSD 149 >gi|259907633|ref|YP_002647989.1| Flagellar basal-body rod modification protein, FlgD [Erwinia pyrifoliae Ep1/96] gi|224963255|emb|CAX54739.1| Flagellar basal-body rod modification protein, FlgD [Erwinia pyrifoliae Ep1/96] gi|283477475|emb|CAY73391.1| Basal-body rod modification protein flgD [Erwinia pyrifoliae DSM 12163] Length = 226 Score = 75.0 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 4/94 (4%) Query: 5 TEVNPTQQEFSKSKSKKTLGQD-AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 + VN T+ +F+ LLI Q+++QDPT PM ++ +QLA F+ Sbjct: 4 SPVNNTRGPGQVDMGSSAADISGSFMTLLIAQMQNQDPTNPMDNNQLTSQLAQFNTAAGV 63 Query: 64 VQMNST---LQELLKSNNLAQASSYIGKNITNAD 94 ++N + + +L A+S++G+ + A Sbjct: 64 EKLNDSVAIVGGMLVQMQEMGATSWVGREVMIAG 97 >gi|82544459|ref|YP_408406.1| flagellar basal body rod modification protein [Shigella boydii Sb227] gi|81245870|gb|ABB66578.1| initiation of hook assembly [Shigella boydii Sb227] gi|320186978|gb|EFW61691.1| Flagellar basal-body rod modification protein FlgD [Shigella flexneri CDC 796-83] gi|332094132|gb|EGI99184.1| basal-body rod modification protein flgD [Shigella boydii 3594-74] Length = 231 Score = 75.0 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+ L + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTMLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNITNADGSI 97 AS+ IG + ++ Sbjct: 92 ASNLIGHGVMIPGTTV 107 >gi|299068731|emb|CBJ39970.1| flagellar hook assembly protein, basal-body rod modification [Ralstonia solanacearum CMR15] Length = 218 Score = 75.0 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 42/66 (63%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS 84 Q+ F++LL+ Q+K+QDP PM S+ +QLA + + Q+N+T+ + + +QASS Sbjct: 30 QNTFMQLLVAQLKNQDPLNPMDNSQLTSQLAQINTVNGISQLNTTMSSMATQSAASQASS 89 Query: 85 YIGKNI 90 IG+ + Sbjct: 90 LIGRTV 95 >gi|311280018|ref|YP_003942249.1| flagellar hook capping protein [Enterobacter cloacae SCF1] gi|308749213|gb|ADO48965.1| flagellar hook capping protein [Enterobacter cloacae SCF1] Length = 230 Score = 75.0 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 3/97 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 NT V T S + S Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + Sbjct: 12 NTGVQSTSSSTSLTGSSAADLQSSFLTLLVAQLKNQDPTNPMQNNELTSQLAQISTVSGI 71 Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 ++N+TL + + + QA++ IG + ++ Sbjct: 72 EKLNTTLGSISGQIDNGQSLQATALIGHGVMIPGTTV 108 >gi|90577343|ref|ZP_01233154.1| flagellar basal body rod modification protein [Vibrio angustum S14] gi|90440429|gb|EAS65609.1| flagellar basal body rod modification protein [Vibrio angustum S14] Length = 225 Score = 75.0 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 3/77 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE---LLKSNNLAQ 81 ++ F+ L++ QI++QDP P+ +E V QLA FSQ+E + M +Q LL + + Sbjct: 37 KNEFINLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVESTENMAKLMQNSMVLLDNMQVLS 96 Query: 82 ASSYIGKNITNADGSIS 98 + +G+ + + Sbjct: 97 TAGLVGQTVYVEGSEVE 113 >gi|149189835|ref|ZP_01868115.1| flagellar basal body rod modification protein D [Vibrio shilonii AK1] gi|148836321|gb|EDL53278.1| flagellar basal body rod modification protein D [Vibrio shilonii AK1] Length = 225 Score = 75.0 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 67/138 (48%), Gaps = 15/138 (10%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 + ++ N + + T Q+ F+ L++ QI++QDP P+ +E V+QLA FSQ++ Sbjct: 15 VASQSNAGIAANPQDMNSATSLQNEFITLMVAQIQNQDPLNPLDGTEYVSQLAQFSQVQS 74 Query: 63 SVQMNSTLQE---LLKSNNLAQASSYIGKN-------ITNADGSISGVVNAIQVSSTGLT 112 + M+ +Q LL + + + +G+ + +DG +G V + SS +T Sbjct: 75 TENMSMLMQNSMVLLDNMQVLSTAGLVGQTVYVSGNEVELSDGIQNGRVE-LAHSSNQVT 133 Query: 113 AITVDN----TEIPITTG 126 + D T++P+ Sbjct: 134 LVVEDEFGQKTKVPLGAH 151 >gi|302387790|ref|YP_003823612.1| flagellar hook capping protein [Clostridium saccharolyticum WM1] gi|302198418|gb|ADL05989.1| flagellar hook capping protein [Clostridium saccharolyticum WM1] Length = 192 Score = 75.0 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 46/100 (46%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 + + + S L D F KLL Q+++QD + PM SE + Q+ + M+ Sbjct: 8 NNYSSLINSLTDNSSSGGLTTDGFFKLLAAQLQNQDMSSPMDNSEMMTQMTQIAMMQAMN 67 Query: 65 QMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAI 104 ++ +++ + N + +S +GK + A +G + I Sbjct: 68 NFSTAMEDFSQINTINYGTSMMGKEVMIAAADKTGQIKKI 107 >gi|157959903|ref|YP_001499937.1| flagellar hook capping protein [Shewanella pealeana ATCC 700345] gi|157844903|gb|ABV85402.1| flagellar hook capping protein [Shewanella pealeana ATCC 700345] Length = 219 Score = 75.0 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 53/100 (53%), Gaps = 3/100 (3%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 +++ T + + ++ F+ L+I QI++QDPT P+ +E V+QLA FSQ+E Sbjct: 5 DVSNTSGATDNIQNSPGNDAASIKNEFMTLMIAQIQNQDPTNPIDGTEYVSQLAQFSQVE 64 Query: 62 QSVQM--NSTLQE-LLKSNNLAQASSYIGKNITNADGSIS 98 M N ++Q ++++ + Q++ +GKN + Sbjct: 65 SLEHMRTNQSMQMVMMENLGIVQSAQLVGKNAMVPAADFT 104 >gi|310764861|gb|ADP09811.1| Flagellar basal-body rod modification protein, FlgD [Erwinia sp. Ejp617] Length = 226 Score = 75.0 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 4/94 (4%) Query: 5 TEVNPTQQEFSKSKSKKTLGQD-AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 + VN T+ +F+ LLI Q+++QDPT PM ++ +QLA F+ Sbjct: 4 SPVNNTRGPGQVDMGSSAADISGSFMTLLIAQMQNQDPTNPMDNNQLTSQLAQFNTAAGV 63 Query: 64 VQMNST---LQELLKSNNLAQASSYIGKNITNAD 94 ++N + + +L A+S++G+ + A Sbjct: 64 EKLNDSVAIVGGMLVQMQEMGATSWVGREVMIAG 97 >gi|89072316|ref|ZP_01158895.1| flagellar basal body rod modification protein [Photobacterium sp. SKA34] gi|89051848|gb|EAR57300.1| flagellar basal body rod modification protein [Photobacterium sp. SKA34] Length = 226 Score = 75.0 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 3/96 (3%) Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65 N + + + ++ F+ L++ QI++QDP P+ +E V QLA FSQ+E + Sbjct: 18 STNMSVAGNPNNANDANSLKNEFINLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVESTEN 77 Query: 66 MNSTLQE---LLKSNNLAQASSYIGKNITNADGSIS 98 M +Q LL + + + +G+ + I Sbjct: 78 MAKLMQNSMVLLDNMQVLSTAGLVGQTVYVEGSEIE 113 >gi|1857437|gb|AAC45655.1| FlgD [Proteus mirabilis] Length = 182 Score = 75.0 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 8/122 (6%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 NT + + K + FL LLITQ+++QDPT PM+ +E +QLA S +E Sbjct: 7 NTIIGEAPSSYHTKKGGSDDIKGNFLTLLITQMQNQDPTNPMQNNELTSQLAQISTVEGI 66 Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120 +N T+ + + + +A+S + + A I + S+ G A + +T+ Sbjct: 67 ETLNKTVNTIVGQIDQSQALRATSLVNHMVMIAGNDI-----YVDKSNNGENAGSDADTD 121 Query: 121 IP 122 I Sbjct: 122 ID 123 >gi|295096226|emb|CBK85316.1| Flagellar hook capping protein [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 236 Score = 75.0 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 3/83 (3%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---L 74 S + Q +FL LL+ Q+K+QDPT PM+ +E QLA S + ++N+TL + + Sbjct: 29 GSNASDLQSSFLTLLVAQLKNQDPTNPMQNNELTTQLAQISTVSGIEKLNTTLGSVSGQI 88 Query: 75 KSNNLAQASSYIGKNITNADGSI 97 ++ QA++ IG + +I Sbjct: 89 DNSQSLQAANLIGHGVMIPGTTI 111 >gi|212637784|ref|YP_002314309.1| flagellar hook capping protein [Shewanella piezotolerans WP3] gi|212559268|gb|ACJ31722.1| Flagellar hook capping protein [Shewanella piezotolerans WP3] Length = 221 Score = 75.0 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 50/89 (56%), Gaps = 3/89 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 N++V + + + ++ F+ L+I QIK+QDPT P+ +E V QLA FSQ+E Sbjct: 9 NSDVASSADVMNSPGNDAAAIKNEFMTLMIAQIKNQDPTNPIDGTEYVTQLAQFSQVESL 68 Query: 64 VQMNSTLQE---LLKSNNLAQASSYIGKN 89 QM + ++++ + Q++ +GKN Sbjct: 69 EQMRANQSSQMVMMENLGIVQSAHLVGKN 97 >gi|299066541|emb|CBJ37731.1| putative Flagellar hook capping protein (flgD) [Ralstonia solanacearum CMR15] Length = 134 Score = 75.0 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 44/70 (62%) Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA 80 +L FLK+L+TQ+ +QDP +PM + +AQ+A F+ + QS QMNS ++ L+ + Sbjct: 18 NSLNMQDFLKVLLTQLTYQDPLKPMDNQQFMAQIAQFTALGQSQQMNSNIETLVSNQASL 77 Query: 81 QASSYIGKNI 90 Q+ IG+ + Sbjct: 78 QSVGLIGRTV 87 >gi|149195337|ref|ZP_01872424.1| Flagellar hook capping protein [Caminibacter mediatlanticus TB-2] gi|149134529|gb|EDM23018.1| Flagellar hook capping protein [Caminibacter mediatlanticus TB-2] Length = 223 Score = 75.0 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 4/89 (4%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 IN V + +F + + + L +DAF++L + Q++ QDPT+PM + + Q A S ME Sbjct: 6 INNNVTTSGNDFVYNPNSQ-LDKDAFMQLFLKQLEMQDPTDPMDTDKMLEQTAYLSTMEM 64 Query: 63 SVQMNSTLQEL---LKSNNLAQASSYIGK 88 + M +TL L L+ + + S IGK Sbjct: 65 NQNMQTTLDNLANTLQQTSSLNSISAIGK 93 >gi|300918677|ref|ZP_07135258.1| flagellar hook capping protein [Escherichia coli MS 115-1] gi|300414171|gb|EFJ97481.1| flagellar hook capping protein [Escherichia coli MS 115-1] Length = 231 Score = 74.6 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNITNADGSI 97 AS+ IG + ++ Sbjct: 92 ASNLIGYGVMIPGTTV 107 >gi|119947178|ref|YP_944858.1| flagellar basal body rod modification protein [Psychromonas ingrahamii 37] gi|119865782|gb|ABM05259.1| flagellar basal-body rod modification protein FlgD [Psychromonas ingrahamii 37] Length = 230 Score = 74.6 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 61/128 (47%), Gaps = 12/128 (9%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 T++ + + + + ++ F+ L++ QI++QDP P +E V+QLA FSQ+E + Sbjct: 16 TQMASQTKTIDANPNDSSSLKNEFITLMVAQIQNQDPLNPGDGTEYVSQLAQFSQVESAE 75 Query: 65 QMNSTLQE---LLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEI 121 M S +Q ++ + + +S +G+ + ++ + + S G A + + Sbjct: 76 NMVSLMQRNSVMMDNLQVLATASLVGQEV---------MIRSDKFSVDGEPAQNLSGQVV 126 Query: 122 PITTGIRI 129 + ++ Sbjct: 127 LTSPSSQV 134 >gi|119469949|ref|ZP_01612754.1| flagellar basal body rod modification protein D [Alteromonadales bacterium TW-7] gi|119446659|gb|EAW27932.1| flagellar basal body rod modification protein D [Alteromonadales bacterium TW-7] Length = 226 Score = 74.6 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 3/90 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 + + L Q+ F LL Q+ QDP++P + +AQ+ F+ E +NS Sbjct: 20 TTPTTTEEQSDALTQEDFFSLLTQQLSFQDPSKPADNDQMIAQMTNFTMAEGISNLNSNF 79 Query: 71 QEL---LKSNNLAQASSYIGKNITNADGSI 97 + L + SN+ QAS+ +GK S+ Sbjct: 80 ESLAASMTSNSALQASTLVGKQALLESDSL 109 >gi|300722683|ref|YP_003711973.1| flagellar hook assembly initiation protein [Xenorhabdus nematophila ATCC 19061] gi|297629190|emb|CBJ89786.1| flagellar biosynthesis; initiation of hook assembly [Xenorhabdus nematophila ATCC 19061] Length = 233 Score = 74.6 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 3/97 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 N+ V +D FL LL+ Q+K+QDPT PM+ +E Q+A S ++ Sbjct: 13 NSTVGELASAAKIKPQSSDDIKDNFLNLLVAQLKNQDPTNPMQNNELTTQIAQISTVQGV 72 Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 ++N TL + + N Q + I + + I Sbjct: 73 EKLNKTLGSIVGQMDHNQAMQTTLLINRGVMVPGDRI 109 >gi|73539449|ref|YP_299816.1| flagellar basal body rod modification protein [Ralstonia eutropha JMP134] gi|72122786|gb|AAZ64972.1| Flagellar hook capping protein [Ralstonia eutropha JMP134] Length = 226 Score = 74.6 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 3/77 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA-- 82 Q FLK+L+TQ+ +QDP PM ++ +QLA S + MNSTL +LL + ++A Sbjct: 34 QSNFLKMLVTQMNNQDPLNPMDNAQLTSQLAQISTVSSMQTMNSTLTQLLNQTSASRAMD 93 Query: 83 -SSYIGKNITNADGSIS 98 ++ IG+ + S Sbjct: 94 SAALIGRTVMVPGSQFS 110 >gi|209963570|ref|YP_002296485.1| basal-body rod modification protein FlgD, putative [Rhodospirillum centenum SW] gi|209957036|gb|ACI97672.1| basal-body rod modification protein FlgD, putative [Rhodospirillum centenum SW] Length = 219 Score = 74.6 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 5/85 (5%) Query: 11 QQEFSKSKSKKTLGQDA--FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 Q+ + + L QD FLKLL Q+ +QDP P+ A++ V QLA FS +EQ+VQ N+ Sbjct: 12 SQQTTADVASVRLAQDTQSFLKLLTAQLANQDPMAPIDATQFVTQLAQFSSVEQAVQSNT 71 Query: 69 TLQELLKSNNLAQ---ASSYIGKNI 90 L E+L + +Y+G+ + Sbjct: 72 RLAEVLGELRSSSERLDLAYVGRTV 96 >gi|254227982|ref|ZP_04921412.1| Flagellar hook capping protein [Vibrio sp. Ex25] gi|262396036|ref|YP_003287889.1| flagellar basal-body rod modification protein FlgD [Vibrio sp. Ex25] gi|151939478|gb|EDN58306.1| Flagellar hook capping protein [Vibrio sp. Ex25] gi|262339630|gb|ACY53424.1| flagellar basal-body rod modification protein FlgD [Vibrio sp. Ex25] Length = 227 Score = 74.6 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 47/86 (54%), Gaps = 3/86 (3%) Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67 N K + + ++ F+ L++ QI++QDP P+ +E V QLA FSQ++ + M+ Sbjct: 22 NNGIAPNPKDMNSASSLENEFISLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVQSTENMS 81 Query: 68 STLQE---LLKSNNLAQASSYIGKNI 90 T+Q+ LL + + + +G+ + Sbjct: 82 RTMQQSMILLDNMQVLSTAGLVGQTV 107 >gi|32477562|ref|NP_870556.1| basal-body rod modification protein FlgD [Rhodopirellula baltica SH 1] gi|32448116|emb|CAD77633.1| probable basal-body rod modification protein FlgD [Rhodopirellula baltica SH 1] Length = 164 Score = 74.6 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 31/104 (29%), Positives = 58/104 (55%), Gaps = 3/104 (2%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 Q S ++ +L D+FLKLLI ++++QDP +P+ ++ V Q+ ++ + Q+ + Sbjct: 33 SAQISESANEGYNSLDVDSFLKLLINELQNQDPLDPVDNAQMVQQIGQIREIGATDQLTN 92 Query: 69 TLQELLKSNNLAQASSYIGKNIT---NADGSISGVVNAIQVSST 109 TL +L S L AS IG+ ++ + + +GVV+ I V + Sbjct: 93 TLSDLSNSQQLVTASGLIGRTVSGLADDQSNTTGVVDKITVETN 136 >gi|258625235|ref|ZP_05720147.1| Flagellar basal-body rod modification protein flgD [Vibrio mimicus VM603] gi|258582482|gb|EEW07319.1| Flagellar basal-body rod modification protein flgD [Vibrio mimicus VM603] Length = 227 Score = 74.6 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 45/87 (51%), Gaps = 3/87 (3%) Query: 14 FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE- 72 + + T Q+ F+ +++ QI++QDP P+ +E V+QLA FSQ++ M+ +Q Sbjct: 31 NPQDTNSATSLQNEFITMMVAQIQNQDPLNPLDGTEYVSQLAQFSQVQSMENMSGLMQNS 90 Query: 73 --LLKSNNLAQASSYIGKNITNADGSI 97 LL + + + +G+ + + Sbjct: 91 MVLLDNMQVLSTAGLVGQTVYVSSNEF 117 >gi|71906390|ref|YP_283977.1| flagellar hook capping protein [Dechloromonas aromatica RCB] gi|71846011|gb|AAZ45507.1| Flagellar hook capping protein [Dechloromonas aromatica RCB] Length = 229 Score = 74.2 bits (181), Expect = 5e-12, Method: Composition-based stats. Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 6/100 (6%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS---NNLAQ 81 QD+FL +L TQ+K+QDP PM ++ +QLA S +E +N+TL LL S + Q Sbjct: 37 QDSFLTMLTTQLKNQDPLNPMDNAQMTSQLAQISTLEGIQGLNTTLTSLLSSYNTSQALQ 96 Query: 82 ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEI 121 A+ IG + SG+ + +S G+T + N+ + Sbjct: 97 AAGAIGSQVLVEG---SGLALSSGISQGGVTLGSAANSVV 133 >gi|124268255|ref|YP_001022259.1| flagellar hook capping protein [Methylibium petroleiphilum PM1] gi|124261030|gb|ABM96024.1| flagellar hook capping protein [Methylibium petroleiphilum PM1] Length = 217 Score = 74.2 bits (181), Expect = 5e-12, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 48/98 (48%), Gaps = 3/98 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 N+ + + +K G + FLKLL+TQ+K+QDP PM ++ +Q+A + + Sbjct: 8 NSSSSVYDALNGSTTTKTDDGSERFLKLLVTQMKNQDPMNPMDNAQVTSQIAQINTVTGI 67 Query: 64 VQMNSTLQ---ELLKSNNLAQASSYIGKNITNADGSIS 98 +N T++ + S+ + Q + +G + A + Sbjct: 68 STLNQTVKSLSSQMLSSQVLQGAGLVGHTVLMAGSKLH 105 >gi|258622487|ref|ZP_05717509.1| Flagellar basal-body rod modification protein flgD [Vibrio mimicus VM573] gi|262173353|ref|ZP_06041030.1| flagellar basal-body rod modification protein FlgD [Vibrio mimicus MB-451] gi|258585187|gb|EEW09914.1| Flagellar basal-body rod modification protein flgD [Vibrio mimicus VM573] gi|261890711|gb|EEY36698.1| flagellar basal-body rod modification protein FlgD [Vibrio mimicus MB-451] Length = 227 Score = 74.2 bits (181), Expect = 5e-12, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 45/87 (51%), Gaps = 3/87 (3%) Query: 14 FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE- 72 + + T Q+ F+ +++ QI++QDP P+ +E V+QLA FSQ++ M+ +Q Sbjct: 31 NPQDTNSATSLQNEFITMMVAQIQNQDPLNPLDGTEYVSQLAQFSQVQSIENMSGLMQNS 90 Query: 73 --LLKSNNLAQASSYIGKNITNADGSI 97 LL + + + +G+ + + Sbjct: 91 MVLLDNMQVLSTAGLVGQTVYVSSNEF 117 >gi|254470066|ref|ZP_05083470.1| flagellar hook capping protein [Pseudovibrio sp. JE062] gi|211960377|gb|EEA95573.1| flagellar hook capping protein [Pseudovibrio sp. JE062] Length = 218 Score = 74.2 bits (181), Expect = 5e-12, Method: Composition-based stats. Identities = 39/128 (30%), Positives = 60/128 (46%), Gaps = 13/128 (10%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 IN S +++ D F+ LL TQI++QDP EP+ +SE QL ++ +EQ Sbjct: 4 INALTPNAGSSGSSAQNSINANFDLFISLLTTQIQNQDPLEPLDSSEYTNQLVQYTMVEQ 63 Query: 63 SVQMNSTLQELLKS---NNLAQASSYIGKNITNA-------DGSISGVVNAIQVSSTGLT 112 V L E L + +Q +YIGK +T D S ++A+ S G Sbjct: 64 QVATTEKLDEQLTQLKTQSASQFVNYIGKEVTAQSSTAQLKDDKASWNLDAV---SAGKA 120 Query: 113 AITVDNTE 120 +T+ N+E Sbjct: 121 TVTIKNSE 128 >gi|327543122|gb|EGF29558.1| flagellar hook capping protein [Rhodopirellula baltica WH47] Length = 153 Score = 74.2 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 31/104 (29%), Positives = 58/104 (55%), Gaps = 3/104 (2%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 Q S ++ +L D+FLKLLI ++++QDP +P+ ++ V Q+ ++ + Q+ + Sbjct: 22 SAQISESANEGYNSLDVDSFLKLLINELQNQDPLDPVDNAQMVQQIGQIREIGATDQLTN 81 Query: 69 TLQELLKSNNLAQASSYIGKNIT---NADGSISGVVNAIQVSST 109 TL +L S L AS IG+ ++ + + +GVV+ I V + Sbjct: 82 TLSDLSNSQQLVTASGLIGRTVSGLADDQSNTTGVVDKITVETN 125 >gi|167626154|ref|YP_001676448.1| flagellar hook capping protein [Shewanella halifaxensis HAW-EB4] gi|167356176|gb|ABZ78789.1| flagellar hook capping protein [Shewanella halifaxensis HAW-EB4] Length = 220 Score = 74.2 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 24/77 (31%), Positives = 45/77 (58%), Gaps = 3/77 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE---LLKSNNLAQ 81 ++ F+ L+I QI++QDPT P+ +E V+QLA FSQ+E QM + ++++ + Q Sbjct: 29 KNEFMTLMIAQIQNQDPTNPIDGTEYVSQLAQFSQVESLEQMRANQSTQMVIMENLGIVQ 88 Query: 82 ASSYIGKNITNADGSIS 98 ++ +GK+ + Sbjct: 89 SAQLVGKDAMVPASEFT 105 >gi|312968851|ref|ZP_07783058.1| basal-body rod modification protein flgD [Escherichia coli 2362-75] gi|312286253|gb|EFR14166.1| basal-body rod modification protein flgD [Escherichia coli 2362-75] Length = 231 Score = 74.2 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 46/76 (60%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA+ S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLALISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNITNADGSI 97 AS+ IG + ++ Sbjct: 92 ASNLIGHGVMIPGTTV 107 >gi|84514660|ref|ZP_01002024.1| Possible FlgD protein [Loktanella vestfoldensis SKA53] gi|84511711|gb|EAQ08164.1| Possible FlgD protein [Loktanella vestfoldensis SKA53] Length = 183 Score = 74.2 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 38/63 (60%) Query: 31 LLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNI 90 +L Q+K+QDP P+++++ QLA FS +EQ+V N L+ L ++ +S++GK + Sbjct: 1 MLTAQMKNQDPLNPVESADFATQLATFSGVEQAVLTNDLLRGLSLQIGVSGLASWVGKEV 60 Query: 91 TNA 93 Sbjct: 61 RAP 63 >gi|310767289|gb|ADP12239.1| flagellar basal body rod modification protein [Erwinia sp. Ejp617] Length = 224 Score = 74.2 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q+ FL LL+TQ+K+QDPT PM ++ QLA + + ++N+TL + + S Q Sbjct: 32 QNNFLTLLVTQLKNQDPTNPMDNAQLTTQLAQINTLSGVEKLNTTLGSISGQITSGQSLQ 91 Query: 82 ASSYIGKNITNADGSI 97 AS+ IG + I Sbjct: 92 ASTLIGHGVMLNGTQI 107 >gi|254475002|ref|ZP_05088388.1| flagellar hook capping protein [Ruegeria sp. R11] gi|214029245|gb|EEB70080.1| flagellar hook capping protein [Ruegeria sp. R11] Length = 228 Score = 74.2 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 34/99 (34%), Positives = 48/99 (48%), Gaps = 3/99 (3%) Query: 14 FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73 K + + FLK+L Q ++QDP EP+ ++E AQLA FS +EQ VQ N L + Sbjct: 21 TPKKATGIASDFETFLKMLTAQARYQDPLEPIDSTEYSAQLAQFSMVEQQVQGNDLLTAM 80 Query: 74 ---LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSST 109 L N+A S ++G + S N I VS Sbjct: 81 QAQLGLANMAAMSGWVGMETRSTAPSHFDGANPITVSPN 119 >gi|91224200|ref|ZP_01259463.1| flagellar basal-body rod modification protein D [Vibrio alginolyticus 12G01] gi|91191111|gb|EAS77377.1| flagellar basal-body rod modification protein D [Vibrio alginolyticus 12G01] Length = 227 Score = 73.8 bits (180), Expect = 6e-12, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 50/93 (53%), Gaps = 5/93 (5%) Query: 3 INTEVNPTQQEFSKSKSKKTLG--QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 +NT+ + K + ++ F+ L++ QI++QDP P+ +E V QLA FSQ+ Sbjct: 15 VNTKAKDSNGISPNPKDMNSASSLENEFISLMVAQIQNQDPLNPLDGTEYVGQLAQFSQV 74 Query: 61 EQSVQMNSTLQE---LLKSNNLAQASSYIGKNI 90 + + M+ T+Q+ LL + + + +G+ + Sbjct: 75 QSTENMSKTMQQSMVLLDNMQVLSTAGLVGQTV 107 >gi|319764538|ref|YP_004128475.1| flagellar hook capping protein [Alicycliphilus denitrificans BC] gi|330826754|ref|YP_004390057.1| flagellar hook capping protein [Alicycliphilus denitrificans K601] gi|317119099|gb|ADV01588.1| flagellar hook capping protein [Alicycliphilus denitrificans BC] gi|329312126|gb|AEB86541.1| flagellar hook capping protein [Alicycliphilus denitrificans K601] Length = 220 Score = 73.8 bits (180), Expect = 7e-12, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 3/77 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 QD FLKLL+ Q+ +QDP P+ ++ Q+A + + +N T+Q + + Q Sbjct: 32 QDRFLKLLVAQLNNQDPMNPLDNAQMTTQMAQINTVTGLQTLNLTMQTMAEQFSTMQQIQ 91 Query: 82 ASSYIGKNITNADGSIS 98 S IG+++ + +S Sbjct: 92 GISLIGRSVLSEGDRMS 108 >gi|312884835|ref|ZP_07744527.1| flagellar basal body rod modification protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309367487|gb|EFP95047.1| flagellar basal body rod modification protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 223 Score = 73.8 bits (180), Expect = 7e-12, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 4/97 (4%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 + + + S +L Q+ F+ L++ QI++QDP P+ +E V+QLA FSQ++ + Sbjct: 16 GSASSSLNVNTNPNSAGSL-QNEFISLMVAQIQNQDPLNPLDGTEYVSQLAQFSQVQSTE 74 Query: 65 QMNSTLQE---LLKSNNLAQASSYIGKNITNADGSIS 98 M + Q LL + + ++ +GK + Sbjct: 75 NMTTMTQNSMVLLDNLQVLSTANLVGKTVYVPSDEFE 111 >gi|283478795|emb|CAY74711.1| Basal-body rod modification protein flgD [Erwinia pyrifoliae DSM 12163] Length = 226 Score = 73.8 bits (180), Expect = 7e-12, Method: Composition-based stats. Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q+ FL LL+TQ+K+QDPT PM ++ QLA + + ++N+TL + + S Q Sbjct: 34 QNNFLTLLVTQLKNQDPTNPMDNAQLTTQLAQINTLSGVERLNTTLGSISGQITSGQSLQ 93 Query: 82 ASSYIGKNITNADGSI 97 AS+ IG + I Sbjct: 94 ASTLIGHGVMLNGTQI 109 >gi|126734092|ref|ZP_01749839.1| flagellar basal-body rod modification protein, putative [Roseobacter sp. CCS2] gi|126716958|gb|EBA13822.1| flagellar basal-body rod modification protein, putative [Roseobacter sp. CCS2] Length = 220 Score = 73.8 bits (180), Expect = 7e-12, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 3/91 (3%) Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65 +V T S + ++ + FL++L Q+K+QDP P+ +++ QLA FS +EQ+V Sbjct: 9 QVASTPPAPSAASTQIGSDFEVFLQMLTAQMKYQDPLNPVDSTDYATQLATFSGVEQAVL 68 Query: 66 MNSTLQELLKSNN---LAQASSYIGKNITNA 93 N L+ L N L ++ +GK + + Sbjct: 69 TNDLLKSLTTQMNTGGLVDMAALVGKQVKST 99 >gi|171059413|ref|YP_001791762.1| flagellar hook capping protein [Leptothrix cholodnii SP-6] gi|170776858|gb|ACB34997.1| flagellar hook capping protein [Leptothrix cholodnii SP-6] Length = 224 Score = 73.8 bits (180), Expect = 7e-12, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 3/84 (3%) Query: 14 FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73 + S D FLKLL+ Q+++QDP PM ++ +Q+A + + ++N ++Q + Sbjct: 22 SGSTASTTEASADRFLKLLVAQMQNQDPLSPMDNAQVTSQMAQINTVSGIEKVNESIQAM 81 Query: 74 ---LKSNNLAQASSYIGKNITNAD 94 Q + +G+ + A Sbjct: 82 GGQFTQMQALQGAQLVGQGVMVAG 105 >gi|260597444|ref|YP_003210015.1| flagellar basal body rod modification protein [Cronobacter turicensis z3032] gi|260216621|emb|CBA29915.1| Basal-body rod modification protein flgD [Cronobacter turicensis z3032] Length = 202 Score = 73.8 bits (180), Expect = 7e-12, Method: Composition-based stats. Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 3/84 (3%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--- 73 + S + Q +FL LL+ Q+K+QDPT PM+ +E QLA S + ++N+TL + Sbjct: 2 TGSNASDLQSSFLTLLVAQLKNQDPTNPMQNNELTTQLAQISTVSGIEKLNTTLGSISGQ 61 Query: 74 LKSNNLAQASSYIGKNITNADGSI 97 + ++ AS+ IG + +I Sbjct: 62 IDNSQSLAASALIGHGVMIPGSTI 85 >gi|152975164|ref|YP_001374681.1| flagellar basal body rod modification protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023916|gb|ABS21686.1| flagellar hook capping protein [Bacillus cytotoxicus NVH 391-98] Length = 174 Score = 73.8 bits (180), Expect = 7e-12, Method: Composition-based stats. Identities = 31/128 (24%), Positives = 63/128 (49%), Gaps = 6/128 (4%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS- 68 T + + K+ +G+D FLKL +T +++QDP M + + Q++ S MEQ M Sbjct: 27 TTTKADEQKTPGVMGKDDFLKLFLTSLQYQDPFNAMDMDQMMNQMSQMSLMEQVQNMTKA 86 Query: 69 --TLQELLKSNNLAQASSYIGKNI---TNADGSISGVVNAIQVSSTGLTAITVDNTEIPI 123 L++ + + L ++GK I + ISG V+A+++++ + V + + + Sbjct: 87 VNALKDTVNTTALDGGMKFLGKYILGPSTDGNQISGKVDAVRLAANNEIQLVVGDKIVLM 146 Query: 124 TTGIRISN 131 +S+ Sbjct: 147 KYVTNVSD 154 >gi|269965643|ref|ZP_06179756.1| Flagellar basal-body rod modification protein flgD [Vibrio alginolyticus 40B] gi|269829711|gb|EEZ83947.1| Flagellar basal-body rod modification protein flgD [Vibrio alginolyticus 40B] Length = 227 Score = 73.8 bits (180), Expect = 7e-12, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 50/93 (53%), Gaps = 5/93 (5%) Query: 3 INTEVNPTQQEFSKSKSKKTLG--QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 +NT+ + K + ++ F+ L++ QI++QDP P+ +E V QLA FSQ+ Sbjct: 15 VNTKAKDSNGISPNPKDMNSASSLENEFISLMVAQIQNQDPLNPLDGTEYVGQLAQFSQV 74 Query: 61 EQSVQMNSTLQE---LLKSNNLAQASSYIGKNI 90 + + M+ T+Q+ LL + + + +G+ + Sbjct: 75 QSTENMSKTMQQSMVLLDNMQVLSTAGLVGQTV 107 >gi|56460253|ref|YP_155534.1| flagellar basal body rod modification protein [Idiomarina loihiensis L2TR] gi|56179263|gb|AAV81985.1| Flagellar hook capping protein [Idiomarina loihiensis L2TR] Length = 227 Score = 73.8 bits (180), Expect = 8e-12, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 42/80 (52%), Gaps = 3/80 (3%) Query: 14 FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73 ++ + L Q+ F +LL Q+ QDP++P++ + +AQ+ F+ E ++ + Sbjct: 23 YADPDERSKLEQEDFFRLLTEQLSMQDPSKPVENDQMIAQMTNFTMAEGITGLSERFDQF 82 Query: 74 ---LKSNNLAQASSYIGKNI 90 + SN QAS+ +G+ + Sbjct: 83 ASDMTSNQALQASTMVGRKV 102 >gi|260767922|ref|ZP_05876856.1| flagellar basal-body rod modification protein FlgD [Vibrio furnissii CIP 102972] gi|260615952|gb|EEX41137.1| flagellar basal-body rod modification protein FlgD [Vibrio furnissii CIP 102972] gi|315179625|gb|ADT86539.1| flagellar basal body rod modification protein D [Vibrio furnissii NCTC 11218] Length = 226 Score = 73.8 bits (180), Expect = 8e-12, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 3/97 (3%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 T N + T Q+ F+ L++ QI++QDP P+ +E V QLA FSQ++ Sbjct: 18 TTTNTGISSNGLDANDSTSLQNEFISLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVQSME 77 Query: 65 QMNSTLQE---LLKSNNLAQASSYIGKNITNADGSIS 98 M+S +Q LL + + + +G+ + + Sbjct: 78 NMSSLMQNSMVLLDNMQVLSTAGLVGQTVYVSGNEFE 114 >gi|212634347|ref|YP_002310872.1| flagellar basal body rod modification protein [Shewanella piezotolerans WP3] gi|212555831|gb|ACJ28285.1| Flagellar hook capping protein [Shewanella piezotolerans WP3] Length = 267 Score = 73.8 bits (180), Expect = 8e-12, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 5/96 (5%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS-- 68 + + + L Q+ F LL Q+ QDP +P+ + + Q+A FS ++ ++N Sbjct: 56 AENSIPEPNSQELSQEDFFSLLSQQLSMQDPFKPVDNDQMIQQMASFSTVDGISKLNEEI 115 Query: 69 -TLQELLKSNNLAQASSYIGKNITNADGSISGVVNA 103 L L S+ QAS +G+ + +G V+A Sbjct: 116 VNLNALTTSSQALQASGLVGQKVLIPSD--TGYVSA 149 >gi|323700470|ref|ZP_08112382.1| flagellar hook capping protein [Desulfovibrio sp. ND132] gi|323460402|gb|EGB16267.1| flagellar hook capping protein [Desulfovibrio desulfuricans ND132] Length = 225 Score = 73.8 bits (180), Expect = 8e-12, Method: Composition-based stats. Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 3/75 (4%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQA 82 D F+ LL T++++QDPTEP+ ++ V Q+ +SQ+EQ +MN + L L + ++ Sbjct: 32 DDFITLLCTELEYQDPTEPVDNTQMVDQMTQYSQLEQLTEMNEKMDTLTDALDAQGISSG 91 Query: 83 SSYIGKNITNADGSI 97 Y+GK + +I Sbjct: 92 LDYLGKEVEADGYTI 106 >gi|259908813|ref|YP_002649169.1| flagellar basal body rod modification protein [Erwinia pyrifoliae Ep1/96] gi|224964435|emb|CAX55944.1| Flagellar biosynthesis, initiation of hook assembly [Erwinia pyrifoliae Ep1/96] Length = 224 Score = 73.8 bits (180), Expect = 8e-12, Method: Composition-based stats. Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q+ FL LL+TQ+K+QDPT PM ++ QLA + + ++N+TL + + S Q Sbjct: 32 QNNFLTLLVTQLKNQDPTNPMDNAQLTTQLAQINTLSGVERLNTTLGSISGQITSGQSLQ 91 Query: 82 ASSYIGKNITNADGSI 97 AS+ IG + I Sbjct: 92 ASTLIGHGVMLNGTQI 107 >gi|156934441|ref|YP_001438357.1| flagellar basal body rod modification protein [Cronobacter sakazakii ATCC BAA-894] gi|156532695|gb|ABU77521.1| hypothetical protein ESA_02272 [Cronobacter sakazakii ATCC BAA-894] Length = 226 Score = 73.4 bits (179), Expect = 9e-12, Method: Composition-based stats. Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 3/84 (3%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--- 73 + S + Q +FL LL+ Q+K+QDPT PM+ +E QLA S + ++N+TL + Sbjct: 26 TGSNASDLQSSFLTLLVAQLKNQDPTNPMQNNELTTQLAQISTVSGIEKLNTTLGSISGQ 85 Query: 74 LKSNNLAQASSYIGKNITNADGSI 97 + ++ AS+ IG + +I Sbjct: 86 IDNSQSLAASALIGHGVMIPGSTI 109 >gi|226314864|ref|YP_002774760.1| hypothetical protein BBR47_52790 [Brevibacillus brevis NBRC 100599] gi|226097814|dbj|BAH46256.1| hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 310 Score = 73.4 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 59/133 (44%), Gaps = 14/133 (10%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 N + P K + L Q+AF+KL++ Q+KHQDP PM S+ + Q ++ + +E+ Sbjct: 11 NPYIQPHMSYKGKKEFSTELDQNAFMKLMLEQLKHQDPMSPMDNSQFIQQTSMLTMVEKI 70 Query: 64 VQMNSTLQELLKSN-NLAQASSYIGKNITNA------------DGSISGVVNAIQVSSTG 110 +M + +++ S L + +G+ + + GV++A+ + G Sbjct: 71 TKMTTLMEQSNNSMVTLDKYEKLVGRTASYSLTTKDEMTGETKTEKKEGVLDAVYMDQ-G 129 Query: 111 LTAITVDNTEIPI 123 + PI Sbjct: 130 KIYFRIAGESTPI 142 >gi|315453408|ref|YP_004073678.1| flagellar hook assembly protein [Helicobacter felis ATCC 49179] gi|315132460|emb|CBY83088.1| flagellar hook assembly protein [Helicobacter felis ATCC 49179] Length = 375 Score = 73.4 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 44/80 (55%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+ +++ + K L +DAF+KL + Q+K+QDPT PM+ + + Q A +Q+E Sbjct: 7 EVTGAKAAMEKKKHEPKIANGLDKDAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66 Query: 62 QSVQMNSTLQELLKSNNLAQ 81 + T++E+ + ++ Sbjct: 67 MQEESKKTMKEVANAMQSSK 86 >gi|325109019|ref|YP_004270087.1| flagellar hook capping protein [Planctomyces brasiliensis DSM 5305] gi|324969287|gb|ADY60065.1| flagellar hook capping protein [Planctomyces brasiliensis DSM 5305] Length = 160 Score = 73.4 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 34/152 (22%), Positives = 63/152 (41%), Gaps = 25/152 (16%) Query: 3 INTEVNPTQQEFS----KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58 I T +PT Q L +AFLKL+I Q+++QDPTEP E + Q++ Sbjct: 4 IETVYSPTGQPVQIVDGNDTGFNALDPEAFLKLMIVQLQNQDPTEPTSNEELLNQISTMR 63 Query: 59 QMEQSVQMNSTLQELLKSNN-------LAQASSYIGKNITNA-------------DGSIS 98 ++ S+++ + L S + A+ IG ++T + Sbjct: 64 SLQSSIELEDMIASLANSQTSSASANFASSAAGLIGHSVTGTIPESTDEEGETIPAEEVE 123 Query: 99 GVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 G+V + G +T+ + E+P+ ++ Sbjct: 124 GIVER-AILRDGKAYVTIGDKELPVENIASVT 154 >gi|87119677|ref|ZP_01075574.1| flagellar basal body rod modification protein [Marinomonas sp. MED121] gi|86165153|gb|EAQ66421.1| flagellar basal body rod modification protein [Marinomonas sp. MED121] Length = 230 Score = 73.4 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 35/131 (26%), Positives = 62/131 (47%), Gaps = 10/131 (7%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 N +V +K SK D F+ L I Q+K QDPT+P ++ V+Q+A S +E+ Sbjct: 19 NAKVKAGVDVEAKEDSKALTDTDVFMTLYIEQLKAQDPTDPQDTNKMVSQIAEMSSLEEL 78 Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120 +++ L+ + L S+ AS+ +G+ I + S + G I + E Sbjct: 79 STISTQLESMTSALTSSQAISASTLVGQKIMANTNTAS-------LDEGGTVPIKMTIPE 131 Query: 121 IPITTGIRISN 131 + ++T + I N Sbjct: 132 VSLSTTLEIRN 142 >gi|291562026|emb|CBL40842.1| Flagellar hook capping protein [butyrate-producing bacterium SS3/4] Length = 189 Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 33/142 (23%), Positives = 65/142 (45%), Gaps = 12/142 (8%) Query: 1 MEINTEVNPTQQE--FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58 + +++ NP Q + S SK T+ ++F+KLL Q+ +QD T PM SE ++Q+ + Sbjct: 5 ITVSSTANPYQAGVYSAGSNSKNTMDVNSFIKLLAAQLSNQDMTSPMDNSEMMSQMTNMA 64 Query: 59 QMEQSVQMNSTLQELLKSNNLAQASSYIGKNIT---------NADGSISGVVNAIQVSST 109 ++ M +L A S IG+ +T A+G G V ++ + Sbjct: 65 MVQSLTAMTESLNTSAAVTTQTYAGSLIGQEVTVAVTDPDTGAANGVKYGKVISVDFTQG 124 Query: 110 G-LTAITVDNTEIPITTGIRIS 130 + + D+T +++ + + Sbjct: 125 DPVVRLEGDDTSYKMSSVLGVG 146 >gi|56551508|ref|YP_162347.1| flagellar hook capping protein [Zymomonas mobilis subsp. mobilis ZM4] gi|241761152|ref|ZP_04759241.1| flagellar hook capping protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|56543082|gb|AAV89236.1| flagellar hook capping protein [Zymomonas mobilis subsp. mobilis ZM4] gi|241374771|gb|EER64232.1| flagellar hook capping protein [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 230 Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 10/115 (8%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--- 73 L FL LL TQ+K+QDP P+ ++ AQ+A FS + Q+N+T+ + Sbjct: 31 KDPTAALSSTDFLTLLTTQLKYQDPDSPVDNTQMAAQMAQFSSVAGINQLNTTVSSIQSD 90 Query: 74 LKSNNLAQASSYIGKN-------ITNADGSISGVVNAIQVSSTGLTAITVDNTEI 121 + ++ L S++IGK T+ DG+ +G V +S ++ ++ Sbjct: 91 VSNSRLGNVSNWIGKAGLVSSNIATSIDGTFAGQVKLDSAASDVKISLADSAGKV 145 >gi|322832563|ref|YP_004212590.1| flagellar hook capping protein [Rahnella sp. Y9602] gi|321167764|gb|ADW73463.1| flagellar hook capping protein [Rahnella sp. Y9602] Length = 234 Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 8/105 (7%) Query: 27 AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQAS 83 +FL LL+ Q+K+QDPT PM S+ +QLA S + ++N+TL + + S + QAS Sbjct: 38 SFLTLLVAQLKNQDPTNPMDNSQLTSQLAQISTVSGIEKLNTTLGSISGQITSGSSVQAS 97 Query: 84 SYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128 S IG + +SG + + G + T E+ + Sbjct: 98 SLIGHGVM-----VSGSAILVGSDTDGTVSTTPFGFELETASDTT 137 >gi|91794996|ref|YP_564647.1| flagellar hook capping protein [Shewanella denitrificans OS217] gi|91716998|gb|ABE56924.1| flagellar hook capping protein [Shewanella denitrificans OS217] Length = 220 Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 3/85 (3%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69 T + ++ F+ L+I QIK+QDPT+P++++E V+QLA FSQ+E M Sbjct: 14 TANVLQSPGNDAASLKNEFMTLMIAQIKNQDPTKPIESAEYVSQLAQFSQVESLEYMRKN 73 Query: 70 LQE---LLKSNNLAQASSYIGKNIT 91 ++++ + Q++S IGK+ T Sbjct: 74 QSSQMVMMENLGIVQSASLIGKSAT 98 >gi|238762360|ref|ZP_04623331.1| Basal-body rod modification protein [Yersinia kristensenii ATCC 33638] gi|238699345|gb|EEP92091.1| Basal-body rod modification protein [Yersinia kristensenii ATCC 33638] Length = 219 Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 46/101 (45%), Gaps = 6/101 (5%) Query: 4 NTEVNPTQQEFSKSK---SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 N+E+N S + + F+ LL+ QI++QDP PM +E V+Q+A SQ+ Sbjct: 7 NSELNSKSGAVSPRQDVLPNGDELNNQFMTLLVAQIQNQDPLNPMDGTEFVSQMAQLSQV 66 Query: 61 EQSVQMNSTLQE---LLKSNNLAQASSYIGKNITNADGSIS 98 + + M L+ ++ ++ +G+ + + Sbjct: 67 QSTENMAKMLKSNTVQMERMQSIATANLVGQQVMVESDDVE 107 >gi|159045905|ref|YP_001534699.1| flagellar basal body rod modification protein [Dinoroseobacter shibae DFL 12] gi|157913665|gb|ABV95098.1| flagellar hook capping protein FlgD [Dinoroseobacter shibae DFL 12] Length = 220 Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 29/98 (29%), Positives = 53/98 (54%), Gaps = 5/98 (5%) Query: 3 INTEVNPTQQEFSKSKSKKTL--GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 + T T Q +++ + + FL++L TQ+++QDP EP+ + + QLA FS + Sbjct: 4 VTTTRTATPQPSGSAQTATAIASDFETFLRMLTTQLENQDPLEPVASQDLAVQLATFSGV 63 Query: 61 EQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADG 95 EQ Q NS L++L + +L+Q +S++G + Sbjct: 64 EQQTQTNSLLEDLGSQMGLMSLSQLASWVGMDALAEGN 101 >gi|260779348|ref|ZP_05888240.1| flagellar basal-body rod modification protein FlgD [Vibrio coralliilyticus ATCC BAA-450] gi|260605512|gb|EEX31807.1| flagellar basal-body rod modification protein FlgD [Vibrio coralliilyticus ATCC BAA-450] Length = 226 Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 49/100 (49%), Gaps = 4/100 (4%) Query: 3 INTEVNPTQQEFSKSKSKKTLG-QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 + + N T + + ++ F+ L++ QI++QDP P+ +E V+QLA FSQ++ Sbjct: 15 VGSGANTTSVTGNPQDANSATSLENEFISLMVAQIQNQDPLNPLDGTEYVSQLAQFSQVQ 74 Query: 62 QSVQMNSTLQE---LLKSNNLAQASSYIGKNITNADGSIS 98 + M S +Q LL + + + +G+ + + Sbjct: 75 STENMASMMQNSMVLLDNMQVLSTAGLVGQTVFVSGNEFE 114 >gi|123442785|ref|YP_001006762.1| flagellar basal body rod modification protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122089746|emb|CAL12599.1| basal-body rod modification protein FlgD [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 191 Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 14/111 (12%) Query: 31 LLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQASSYIG 87 +L+ Q+K+QDPT PM+ +E QLA + + ++N+TL + + ++ QASS IG Sbjct: 1 MLVAQLKNQDPTNPMQNNELTTQLAQINTVSGIEKLNTTLGSISGQIDNSQSLQASSLIG 60 Query: 88 KNITNAD-----GSISGVVNAIQV------SSTGLTAITVDNTEIPITTGI 127 + + GS GVV ++ +TA D+ + + T Sbjct: 61 RGVMVPGTNVLAGSKDGVVTTTPFGVELERAADKVTATITDSNGVAVRTIE 111 >gi|149191152|ref|ZP_01869410.1| flagellar basal body rod modification protein D [Vibrio shilonii AK1] gi|148834990|gb|EDL51969.1| flagellar basal body rod modification protein D [Vibrio shilonii AK1] Length = 221 Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 51/100 (51%), Gaps = 3/100 (3%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 ++N + + ++ + ++ F+ L++ QI++QDP P +E VAQLA FSQ+E Sbjct: 9 QVNNIESASTLPPQENPNSAGALKNEFITLMVAQIENQDPLNPTDGTEYVAQLAQFSQVE 68 Query: 62 QSVQMNSTLQE---LLKSNNLAQASSYIGKNITNADGSIS 98 + + +Q +L + + ++ + K +T +S Sbjct: 69 STENLVQLMQNNTTMLDNLQVLSTAALVDKTVTVKSDQLS 108 >gi|291613037|ref|YP_003523194.1| flagellar hook capping protein [Sideroxydans lithotrophicus ES-1] gi|291583149|gb|ADE10807.1| flagellar hook capping protein [Sideroxydans lithotrophicus ES-1] Length = 220 Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 QD FL LL+TQ+K+QDP PM ++ +Q+A S + Q+NST+Q L + ++ Q Sbjct: 28 QDRFLTLLVTQLKNQDPLNPMDNAQVTSQMAQLSTVSGINQLNSTVQALSASMATSQSLQ 87 Query: 82 ASSYIGKNITNADGSI 97 A+S IG I Sbjct: 88 ATSMIGHAALVPGAQI 103 >gi|182418374|ref|ZP_02949669.1| flagellar hook assembly protein FlgD [Clostridium butyricum 5521] gi|237666720|ref|ZP_04526705.1| flagellar hook capping protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377756|gb|EDT75300.1| flagellar hook assembly protein FlgD [Clostridium butyricum 5521] gi|237657919|gb|EEP55474.1| flagellar hook capping protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 308 Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 56/118 (47%), Gaps = 2/118 (1%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 + + T + + S LGQ+AFL +L+ ++ + DPT+ ++ V Q+A F+ +EQ Sbjct: 5 VTNALGYTDRGTAIISSNTELGQNAFLNILVAELSNMDPTKDQDSTAYVTQMAEFASIEQ 64 Query: 63 SVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120 +N+T++ + Q + K+ + G++ + S T A +D + Sbjct: 65 LNNLNTTMKNFSYQQMVGQVAILNDKD--TDGNNKFGLITQVFKSGTSTYATVLDAST 120 >gi|153831740|ref|ZP_01984407.1| flagellar basal body rod modification protein [Vibrio harveyi HY01] gi|148872250|gb|EDL71067.1| flagellar basal body rod modification protein [Vibrio harveyi HY01] Length = 228 Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 58/116 (50%), Gaps = 15/116 (12%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE---LLKSNNLAQ 81 Q+ F+ L++ QI++QDP P+ +E V+QLA FSQ++ + M+ +Q LL + + Sbjct: 40 QNEFISLMVAQIQNQDPLNPLDGTEYVSQLAQFSQVQSTENMSMLMQNSMVLLDNMQVLS 99 Query: 82 ASSYIGKNITNADGSI-------SGVVNAIQVSSTGLTAITVDN----TEIPITTG 126 + +G+ + + SG V ++ S +T + D T++P+ Sbjct: 100 TAGLVGQTVYVSSNEFELGEGVQSGKVE-LEHGSNQVTLVVKDEFGQSTKVPLGAH 154 >gi|260222466|emb|CBA32058.1| hypothetical protein Csp_D30220 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 184 Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 49/95 (51%), Gaps = 6/95 (6%) Query: 29 LKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQASSY 85 +KLL+ Q+ +QDP PM ++ +Q+A + + ++N+T++ + S + Q +S Sbjct: 1 MKLLVAQLNNQDPMNPMDNAQMTSQIAQINTVSGIQELNATMKSMAEQFTSMQVLQGASM 60 Query: 86 IGKNITNADGSIS---GVVNAIQVSSTGLTAITVD 117 +G + G++S GV ++ +T+D Sbjct: 61 VGHGVLVESGTLSIDGGVAKGAVNLNSKADKVTID 95 >gi|312172059|emb|CBX80316.1| Basal-body rod modification protein flgD [Erwinia amylovora ATCC BAA-2158] Length = 223 Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q+ FL LL+TQ+K+QDPT PM ++ QLA + + ++N+TL + + S Q Sbjct: 31 QNNFLTLLVTQLKNQDPTNPMDNAQLTTQLAQINTLSGVEKLNTTLGSISGQITSGQSLQ 90 Query: 82 ASSYIGKNITNADGSI 97 AS+ IG + I Sbjct: 91 ASTLIGHGVMVNGTQI 106 >gi|300311351|ref|YP_003775443.1| flagellar basal-body rod modification protein [Herbaspirillum seropedicae SmR1] gi|300074136|gb|ADJ63535.1| flagellar basal-body rod modification protein [Herbaspirillum seropedicae SmR1] Length = 240 Score = 72.7 bits (177), Expect = 1e-11, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 3/92 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA-- 82 Q+ FL LL+ Q+K+QDP PM S+ +Q+A S + Q+NSTL L+ + N +QA Sbjct: 36 QNRFLTLLMAQMKNQDPNNPMDNSQLTSQMAQLSTVSGISQLNSTLATLMGNLNSSQALS 95 Query: 83 -SSYIGKNITNADGSISGVVNAIQVSSTGLTA 113 ++ IG ++ S+ + +S Sbjct: 96 SANMIGHSVLAPGNSVQLTSETTKDASGNDVT 127 >gi|292487938|ref|YP_003530813.1| basal-body rod modification protein FlgD [Erwinia amylovora CFBP1430] gi|292899157|ref|YP_003538526.1| flagellar hook formation protein FlgD [Erwinia amylovora ATCC 49946] gi|291199005|emb|CBJ46116.1| flagellar hook formation protein FlgD [Erwinia amylovora ATCC 49946] gi|291553360|emb|CBA20405.1| Basal-body rod modification protein flgD [Erwinia amylovora CFBP1430] Length = 223 Score = 72.7 bits (177), Expect = 1e-11, Method: Composition-based stats. Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q+ FL LL+TQ+K+QDPT PM ++ QLA + + ++N+TL + + S Q Sbjct: 31 QNNFLTLLVTQLKNQDPTNPMDNAQLTTQLAQINTLSGVEKLNTTLGSISGQITSGQSLQ 90 Query: 82 ASSYIGKNITNADGSI 97 AS+ IG + I Sbjct: 91 ASTLIGHGVMVNGTQI 106 >gi|260752885|ref|YP_003225778.1| flagellar hook capping protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552248|gb|ACV75194.1| flagellar hook capping protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 230 Score = 72.7 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 10/115 (8%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--- 73 L FL LL TQ+K+QDP P+ ++ AQ+A FS + Q+N+T+ + Sbjct: 31 KDPTAALSSTDFLTLLTTQLKYQDPDSPVDNTQMAAQMAQFSSVAGINQLNTTVSSIQSD 90 Query: 74 LKSNNLAQASSYIGKN-------ITNADGSISGVVNAIQVSSTGLTAITVDNTEI 121 + ++ L S++IGK T+ DG+ +G V +S ++ ++ Sbjct: 91 VSNSRLGNVSNWIGKAGLVSSNIATSIDGTFAGQVKLDSAASDVKISLADSAGKV 145 >gi|156976140|ref|YP_001447046.1| flagellar basal body rod modification protein [Vibrio harveyi ATCC BAA-1116] gi|156527734|gb|ABU72819.1| hypothetical protein VIBHAR_04911 [Vibrio harveyi ATCC BAA-1116] Length = 228 Score = 72.7 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 58/116 (50%), Gaps = 15/116 (12%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE---LLKSNNLAQ 81 Q+ F+ L++ QI++QDP P+ +E V+QLA FSQ++ + M+ +Q LL + + Sbjct: 40 QNEFISLMVAQIQNQDPLNPLDGTEYVSQLAQFSQVQSTENMSMLMQNSMVLLDNMQVLS 99 Query: 82 ASSYIGKNITNADGSI-------SGVVNAIQVSSTGLTAITVDN----TEIPITTG 126 + +G+ + + SG V ++ S +T + D T++P+ Sbjct: 100 TAGLVGQTVYVSSNEFELGEGVQSGKVE-LEHGSNQVTLVVKDEFGQSTKVPLGAH 154 >gi|157146227|ref|YP_001453546.1| flagellar basal body rod modification protein [Citrobacter koseri ATCC BAA-895] gi|157083432|gb|ABV13110.1| hypothetical protein CKO_01984 [Citrobacter koseri ATCC BAA-895] Length = 232 Score = 72.7 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 6/91 (6%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT P++ +E QLA S + ++N+TL + + ++ Q Sbjct: 33 QSSFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGIEKLNTTLGAISGQIDNSQSLQ 92 Query: 82 ASSYIGKNITNADGSI---SGVVNAIQVSST 109 AS+ IG + +I +G +++T Sbjct: 93 ASTLIGHGVMIPGTTILAGTGTEEGATITTT 123 >gi|15895425|ref|NP_348774.1| flagellar hook assembly protein FlgD [Clostridium acetobutylicum ATCC 824] gi|15025149|gb|AAK80114.1|AE007716_3 Flagellar hook assembly protein FlgD [Clostridium acetobutylicum ATCC 824] gi|325509571|gb|ADZ21207.1| Flagellar hook assembly protein FlgD [Clostridium acetobutylicum EA 2018] Length = 239 Score = 72.7 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 7/82 (8%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78 + TLGQDAFLK+LI ++ HQDPT +++ +AQLA FS +EQ +N T+ Sbjct: 32 AGNTLGQDAFLKILIAEMSHQDPTSQQDSTQYIAQLAQFSNLEQMTNLNRTMT------- 84 Query: 79 LAQASSYIGKNITNADGSISGV 100 + ASS +G +T GV Sbjct: 85 FSGASSLMGGTVTLKQYDPDGV 106 >gi|94312668|ref|YP_585877.1| flagellar hook capping protein [Cupriavidus metallidurans CH34] gi|93356520|gb|ABF10608.1| flagellar hook capping protein [Cupriavidus metallidurans CH34] Length = 222 Score = 72.7 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 26/98 (26%), Positives = 50/98 (51%), Gaps = 3/98 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 ++ + Q + Q+ FL +L+TQ+ +QDP P+ S+ +QLA S + Sbjct: 9 SSTTSAVNQALQNGSASAADLQNQFLTMLVTQMNNQDPLNPLDNSQLTSQLAQISTVSGL 68 Query: 64 VQMNSTLQELLKSNNLAQA---SSYIGKNITNADGSIS 98 MN+T+ +LL+ ++A ++ IGK + ++S Sbjct: 69 QTMNTTMTQLLQQTAASRAMDSANLIGKTVMVPGSAVS 106 >gi|148980303|ref|ZP_01815990.1| flagellar basal body rod modification protein D [Vibrionales bacterium SWAT-3] gi|145961322|gb|EDK26632.1| flagellar basal body rod modification protein D [Vibrionales bacterium SWAT-3] Length = 222 Score = 72.7 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 3/100 (3%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM- 60 ++N + + + + + ++ F+ L++ QI++QDP P +E VAQLA FSQ+ Sbjct: 9 QVNNIESASTMTPQDNPNSASALKNEFITLMVAQIENQDPLNPTDGTEYVAQLAQFSQVE 68 Query: 61 --EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSIS 98 E VQ+ +L + + ++ I K +T +S Sbjct: 69 STENLVQLTQNNSTMLDNLQVLSTAALIDKTVTVKSERLS 108 >gi|74101657|gb|AAZ99747.1| FlgDL [Aeromonas hydrophila] Length = 231 Score = 72.7 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 43/77 (55%), Gaps = 3/77 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ---MNSTLQELLKSNNLAQ 81 ++ FL++++ QI++QDPT P+ ++ V QLA FS +E + ++ + + Q Sbjct: 42 RNEFLQMMVAQIQNQDPTNPLDGAQYVTQLAQFSMVEGVESLKVLQQKSINMMDTQQVLQ 101 Query: 82 ASSYIGKNITNADGSIS 98 +++ I K + +++ Sbjct: 102 STALIDKEVMVPSKTLT 118 >gi|269960115|ref|ZP_06174491.1| Flagellar basal-body rod modification protein flgD [Vibrio harveyi 1DA3] gi|269835086|gb|EEZ89169.1| Flagellar basal-body rod modification protein flgD [Vibrio harveyi 1DA3] Length = 228 Score = 72.3 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 58/116 (50%), Gaps = 15/116 (12%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE---LLKSNNLAQ 81 Q+ F+ L++ QI++QDP P+ +E V+QLA FSQ++ + M+ +Q LL + + Sbjct: 40 QNEFISLMVAQIQNQDPLNPLDGTEYVSQLAQFSQVQSTENMSMLMQNSMVLLDNMQVLS 99 Query: 82 ASSYIGKNITNADGSI-------SGVVNAIQVSSTGLTAITVDN----TEIPITTG 126 + +G+ + + SG V ++ S +T + D T++P+ Sbjct: 100 TAGLVGQTVYVSSNEFELGEGVQSGKVE-LEHGSNQVTLVVKDEFGQSTKVPLGAH 154 >gi|83309604|ref|YP_419868.1| flagellar hook capping protein [Magnetospirillum magneticum AMB-1] gi|82944445|dbj|BAE49309.1| Flagellar hook capping protein [Magnetospirillum magneticum AMB-1] Length = 274 Score = 71.9 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 3/72 (4%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQAS-- 83 + FL +L TQ+KHQDP PM +++ QL FS +EQ + NS L++L+K AQ S Sbjct: 32 NTFLTMLTTQLKHQDPLSPMDSTQFTNQLVQFSSVEQQINANSNLEKLIKLQQTAQTSQG 91 Query: 84 -SYIGKNITNAD 94 SY+G+ + + Sbjct: 92 ISYLGQTVEVSG 103 >gi|323492339|ref|ZP_08097492.1| flagellar basal body rod modification protein [Vibrio brasiliensis LMG 20546] gi|323313386|gb|EGA66497.1| flagellar basal body rod modification protein [Vibrio brasiliensis LMG 20546] Length = 226 Score = 71.9 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 43/76 (56%), Gaps = 3/76 (3%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE---LLKSNNLAQA 82 + F+ L++ QI++QDP P+ +E V+QLA FSQ++ + M++ +Q LL + + Sbjct: 39 NEFISLMVAQIQNQDPLNPLDGTEYVSQLAQFSQVQSTENMSTMMQNSMVLLDNMQVLST 98 Query: 83 SSYIGKNITNADGSIS 98 + +G+ + + Sbjct: 99 AGLVGQTVYVSSNEFE 114 >gi|317047690|ref|YP_004115338.1| flagellar hook capping protein [Pantoea sp. At-9b] gi|316949307|gb|ADU68782.1| flagellar hook capping protein [Pantoea sp. At-9b] Length = 224 Score = 71.9 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 52/101 (51%), Gaps = 6/101 (5%) Query: 3 INTEVNPT---QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59 +N ++PT S + + Q+ FL +L+TQ+++QDPT PM S+ QLA + Sbjct: 7 VNENLDPTVLSSSSSSSTGNSAEDLQNQFLTMLVTQLQNQDPTNPMDNSQLTTQLAQINT 66 Query: 60 MEQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 + ++N+TL + + ++ Q+++ IG + I Sbjct: 67 LSGIEKLNTTLGSISGQISTSQNLQSTTLIGHGVMVDGSQI 107 >gi|23015642|ref|ZP_00055412.1| COG1843: Flagellar hook capping protein [Magnetospirillum magnetotacticum MS-1] Length = 277 Score = 71.9 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 3/72 (4%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQAS-- 83 + FL +L TQ+KHQDP PM +++ QL FS +EQ + NS L++L+K AQ S Sbjct: 36 NTFLTMLTTQLKHQDPLSPMDSTQFTNQLVQFSSVEQQINANSNLEKLIKLQQTAQTSQG 95 Query: 84 -SYIGKNITNAD 94 SY+G+ + A Sbjct: 96 ISYLGQTVEVAG 107 >gi|89092135|ref|ZP_01165090.1| basal-body rod modification protein FlgD [Oceanospirillum sp. MED92] gi|89083870|gb|EAR63087.1| basal-body rod modification protein FlgD [Oceanospirillum sp. MED92] Length = 235 Score = 71.9 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 5/123 (4%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 N T+ S S S+ D F++L+I Q+++QDPT P ++ + Q+A SQ+E Sbjct: 16 NTQNQTKSTQSSSTSQSQEDSDMFMRLMIAQLQNQDPTSPADTNDFMQQIATMSQVESIN 75 Query: 65 QMNSTL----QELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120 + T+ Q +L S QASS +G+++ A + V + + G + +E Sbjct: 76 NLTQTVQSTSQSMLASQAALQASSMVGQSVYIAGDTAE-VGTVVNPYAKGSFNLDSSASE 134 Query: 121 IPI 123 + I Sbjct: 135 VRI 137 >gi|224373465|ref|YP_002607837.1| flagellar hook capping protein [Nautilia profundicola AmH] gi|223589079|gb|ACM92815.1| flagellar hook capping protein [Nautilia profundicola AmH] Length = 223 Score = 71.9 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 12/91 (13%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LK 75 L +DAF+KL + +++ QDPT+PM + + Q A S ME + M +L L L Sbjct: 21 PDSQLDKDAFMKLFLAELQMQDPTDPMDTDKMLEQTAYLSTMEMNDNMQKSLDNLSNVLS 80 Query: 76 SNNLAQASSYIGK---------NITNADGSI 97 + + S IGK N+T+ D S+ Sbjct: 81 TTSQFSTLSAIGKMADTGYRYVNVTDDDNSV 111 >gi|167644974|ref|YP_001682637.1| flagellar hook capping protein [Caulobacter sp. K31] gi|167347404|gb|ABZ70139.1| flagellar hook capping protein [Caulobacter sp. K31] Length = 232 Score = 71.5 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 3/96 (3%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 M + N + + S++ + FLKLL TQ+K+QDP P S+ +Q+ + + Sbjct: 1 MAVTATSNTVTDKINNSRTSLASNEQTFLKLLTTQLKNQDPLSPTDTSQMTSQITQMTGV 60 Query: 61 EQSVQMNSTLQELLKSNN---LAQASSYIGKNITNA 93 EQ + N L L+ + +++ + +GK +T Sbjct: 61 EQQLVTNELLTALVGMSTGGGISEGVNLMGKQVTAE 96 >gi|84683989|ref|ZP_01011891.1| Possible FlgD protein [Maritimibacter alkaliphilus HTCC2654] gi|84667742|gb|EAQ14210.1| Possible FlgD protein [Rhodobacterales bacterium HTCC2654] Length = 227 Score = 71.5 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 29/75 (38%), Positives = 42/75 (56%) Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72 E KSKS + + FLK+L Q+++QDP P+++S+ QLA FS +EQ VQ N L+ Sbjct: 23 EDPKSKSAISSDFETFLKMLTVQMENQDPLNPIESSDYAVQLATFSGVEQQVQTNDLLKA 82 Query: 73 LLKSNNLAQASSYIG 87 L + S G Sbjct: 83 LQTQLGVMSMSDLAG 97 >gi|4378859|gb|AAD19727.1| basal-body rod modification protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 230 Score = 71.5 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 10/115 (8%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--- 73 L FL LL TQ+K+QDP P+ ++ A +A FS + Q+N+T+ + Sbjct: 31 KDPTAALSSTDFLTLLTTQLKYQDPDSPVDNTQMAAPMAQFSSVAGINQLNTTVSSIQSD 90 Query: 74 LKSNNLAQASSYIGKN-------ITNADGSISGVVNAIQVSSTGLTAITVDNTEI 121 + ++ L S++IGK T+ DG+ +G V +S ++ ++ Sbjct: 91 VSNSRLGNVSNWIGKAGLVSSNIATSIDGTFAGQVKLDSAASDVKISLADSAGKV 145 >gi|22127328|ref|NP_670751.1| flagellar basal body rod modification protein [Yersinia pestis KIM 10] gi|45442795|ref|NP_994334.1| flagellar basal body rod modification protein [Yersinia pestis biovar Microtus str. 91001] gi|108809056|ref|YP_652972.1| flagellar basal body rod modification protein [Yersinia pestis Antiqua] gi|108810747|ref|YP_646514.1| flagellar basal body rod modification protein [Yersinia pestis Nepal516] gi|145597816|ref|YP_001161892.1| flagellar basal body rod modification protein [Yersinia pestis Pestoides F] gi|150260250|ref|ZP_01916978.1| lateral flagellar hook capping protein [Yersinia pestis CA88-4125] gi|162420922|ref|YP_001604848.1| flagellar basal body rod modification protein [Yersinia pestis Angola] gi|165925067|ref|ZP_02220899.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Orientalis str. F1991016] gi|165939088|ref|ZP_02227640.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Orientalis str. IP275] gi|166008806|ref|ZP_02229704.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Antiqua str. E1979001] gi|166211874|ref|ZP_02237909.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Antiqua str. B42003004] gi|167398737|ref|ZP_02304261.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167418933|ref|ZP_02310686.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425065|ref|ZP_02316818.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167466341|ref|ZP_02331045.1| basal-body rod modification protein FlgD [Yersinia pestis FV-1] gi|218927911|ref|YP_002345786.1| flagellar basal body rod modification protein [Yersinia pestis CO92] gi|229837407|ref|ZP_04457570.1| flagellar basal-body rod modification protein flgD [Yersinia pestis Pestoides A] gi|229840620|ref|ZP_04460779.1| flagellar basal-body rod modification protein flgD [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842829|ref|ZP_04462981.1| flagellar basal-body rod modification protein flgD [Yersinia pestis biovar Orientalis str. India 195] gi|229900944|ref|ZP_04516068.1| flagellar basal-body rod modification protein flgD [Yersinia pestis Nepal516] gi|270487674|ref|ZP_06204748.1| flagellar hook capping protein [Yersinia pestis KIM D27] gi|294502787|ref|YP_003566849.1| flagellar basal body rod modification protein [Yersinia pestis Z176003] gi|21960409|gb|AAM87002.1|AE013948_10 putative flagellar assembly protein [Yersinia pestis KIM 10] gi|45437661|gb|AAS63211.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Microtus str. 91001] gi|108774395|gb|ABG16914.1| basal-body rod modification protein [Yersinia pestis Nepal516] gi|108780969|gb|ABG15027.1| putative basal-body rod modification protein [Yersinia pestis Antiqua] gi|115346522|emb|CAL19398.1| putative basal-body rod modification protein [Yersinia pestis CO92] gi|145209512|gb|ABP38919.1| basal-body rod modification protein [Yersinia pestis Pestoides F] gi|149289658|gb|EDM39735.1| lateral flagellar hook capping protein [Yersinia pestis CA88-4125] gi|162353737|gb|ABX87685.1| basal-body rod modification protein FlgD [Yersinia pestis Angola] gi|165913044|gb|EDR31669.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Orientalis str. IP275] gi|165923267|gb|EDR40418.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Orientalis str. F1991016] gi|165992145|gb|EDR44446.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Antiqua str. E1979001] gi|166206620|gb|EDR51100.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Antiqua str. B42003004] gi|166962927|gb|EDR58948.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051241|gb|EDR62649.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055828|gb|EDR65609.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229682283|gb|EEO78375.1| flagellar basal-body rod modification protein flgD [Yersinia pestis Nepal516] gi|229690096|gb|EEO82153.1| flagellar basal-body rod modification protein flgD [Yersinia pestis biovar Orientalis str. India 195] gi|229696986|gb|EEO87033.1| flagellar basal-body rod modification protein flgD [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705530|gb|EEO91540.1| flagellar basal-body rod modification protein flgD [Yersinia pestis Pestoides A] gi|262360819|gb|ACY57540.1| flagellar basal body rod modification protein [Yersinia pestis D106004] gi|262364763|gb|ACY61320.1| flagellar basal body rod modification protein [Yersinia pestis D182038] gi|270336178|gb|EFA46955.1| flagellar hook capping protein [Yersinia pestis KIM D27] gi|294353246|gb|ADE63587.1| flagellar basal body rod modification protein [Yersinia pestis Z176003] gi|320016712|gb|ADW00284.1| Flagellar basal-body rod modification proteinflgD [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 218 Score = 71.5 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 8/106 (7%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLG-----QDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55 M+IN N + L + F+ LL+ QIK+QDP P +E V+Q+A Sbjct: 1 MQINESRNSANVGNQSPAPEGGLPGGEQLNNQFMTLLVAQIKNQDPLNPADGTEFVSQMA 60 Query: 56 VFSQMEQSVQMNSTLQE---LLKSNNLAQASSYIGKNITNADGSIS 98 SQ++ + M L+ + ++ +G+ + I+ Sbjct: 61 QLSQVQATENMAKLLKSNTVQMAKMQTMATANLVGQQVMVEGHEIT 106 >gi|189426346|ref|YP_001953523.1| flagellar hook capping protein [Geobacter lovleyi SZ] gi|189422605|gb|ACD97003.1| flagellar hook capping protein [Geobacter lovleyi SZ] Length = 223 Score = 71.1 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 3/78 (3%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN---L 79 + DAFLKL I QI++QDP P ++ ++Q++ +Q+EQS + L LL + + Sbjct: 27 MDTDAFLKLFIAQIQYQDPLAPQDTNDMLSQISQLTQVEQSYNTATALNNLLTAQSNSLA 86 Query: 80 AQASSYIGKNITNADGSI 97 + IGK+I S+ Sbjct: 87 LSSVGLIGKDIVALGDSL 104 >gi|89069831|ref|ZP_01157166.1| Possible FlgD protein [Oceanicola granulosus HTCC2516] gi|89044632|gb|EAR50748.1| Possible FlgD protein [Oceanicola granulosus HTCC2516] Length = 183 Score = 71.1 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 3/66 (4%) Query: 31 LLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQASSYIG 87 +L Q+K+QDP P+++++ QLA FSQ+EQ V N L L L + L Q + ++G Sbjct: 1 MLTVQLKNQDPLNPVESADYAVQLATFSQVEQQVLTNDLLTSLSEQLGAAGLGQVADWVG 60 Query: 88 KNITNA 93 + A Sbjct: 61 REARVA 66 >gi|238752867|ref|ZP_04614332.1| Basal-body rod modification protein [Yersinia rohdei ATCC 43380] gi|238708906|gb|EEQ01159.1| Basal-body rod modification protein [Yersinia rohdei ATCC 43380] Length = 218 Score = 71.1 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 11/114 (9%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA--- 82 + F+ LL+ QI++QDP P +E V+Q+A SQ++ + M L+ QA Sbjct: 31 NQFMTLLVAQIQNQDPLNPTDGTEFVSQMAQLSQVQSTENMAKLLKSNTVQMEKMQAMAT 90 Query: 83 SSYIGKNITNADGSI-------SGVVNAIQVSSTGLTAITVD-NTEIPITTGIR 128 ++ +G+N+ G+I SG + Q +S + +T E PI G + Sbjct: 91 ANLVGQNVMVESGTIELDNKKQSGRLTLQQAASDVVVYLTDTAGREHPINLGEQ 144 >gi|296283233|ref|ZP_06861231.1| flagellar hook capping protein [Citromicrobium bathyomarinum JL354] Length = 215 Score = 71.1 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 28/66 (42%), Positives = 49/66 (74%), Gaps = 3/66 (4%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS---NNLAQA 82 D FLKLL TQ+++QDP +PM+ SE QL +SQ+EQS+Q + L+++L + ++AQ+ Sbjct: 23 DMFLKLLTTQMQNQDPLDPMETSEYTQQLTQYSQVEQSIQQTAALKDILSALSTQDIAQS 82 Query: 83 SSYIGK 88 ++++G+ Sbjct: 83 ANFLGQ 88 >gi|242238968|ref|YP_002987149.1| flagellar hook capping protein [Dickeya dadantii Ech703] gi|242131025|gb|ACS85327.1| flagellar hook capping protein [Dickeya dadantii Ech703] Length = 225 Score = 71.1 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 3/77 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q+ F+ LL+ Q+++QDPT+PM S+ QLA S + ++N+TL + L +N + Q Sbjct: 31 QNEFMTLLVAQLQNQDPTDPMDNSQLTTQLAQISMLSGIEEINTTLGSITSQLDTNEMLQ 90 Query: 82 ASSYIGKNITNADGSIS 98 AS+ IG + SI+ Sbjct: 91 ASTLIGNGVLIEGNSIT 107 >gi|170022970|ref|YP_001719475.1| flagellar basal body rod modification protein [Yersinia pseudotuberculosis YPIII] gi|169749504|gb|ACA67022.1| flagellar hook capping protein [Yersinia pseudotuberculosis YPIII] Length = 218 Score = 71.1 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 8/106 (7%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLG-----QDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55 M+IN N + L + F+ LL+ QIK+QDP P +E V+Q+A Sbjct: 1 MQINESRNSANVGNQSPAPEGGLPGGEQLNNQFMTLLVAQIKNQDPLNPADGTEFVSQMA 60 Query: 56 VFSQMEQSVQMNSTLQE---LLKSNNLAQASSYIGKNITNADGSIS 98 SQ++ + M L+ + ++ +G+ + I+ Sbjct: 61 QLSQVQATENMAKLLKSNTVQMAKMQTMATANLVGQQVMVEGHEIT 106 >gi|51597638|ref|YP_071829.1| flagellar basal body rod modification protein [Yersinia pseudotuberculosis IP 32953] gi|186896772|ref|YP_001873884.1| flagellar basal body rod modification protein [Yersinia pseudotuberculosis PB1/+] gi|51590920|emb|CAH22576.1| Possible FlgD-like basal-body rod modification protein [Yersinia pseudotuberculosis IP 32953] gi|186699798|gb|ACC90427.1| flagellar hook capping protein [Yersinia pseudotuberculosis PB1/+] Length = 218 Score = 71.1 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 8/106 (7%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLG-----QDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55 M+IN N + L + F+ LL+ QIK+QDP P +E V+Q+A Sbjct: 1 MQINESRNSANVGNQSPAPEGGLPGGEQLNNQFMTLLVAQIKNQDPLNPADGTEFVSQMA 60 Query: 56 VFSQMEQSVQMNSTLQE---LLKSNNLAQASSYIGKNITNADGSIS 98 SQ++ + M L+ + ++ +G+ + I+ Sbjct: 61 QLSQVQATENMAKLLKSNTVQMAKMQTMATANLVGQQVMVEGHEIT 106 >gi|306820121|ref|ZP_07453769.1| flagellar hook capping protein [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551899|gb|EFM39842.1| flagellar hook capping protein [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 158 Score = 71.1 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 21/53 (39%), Positives = 35/53 (66%) Query: 24 GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 +D F+KL + Q+KHQDP EPMK + + Q+A F+ +EQ M ++ ++ K+ Sbjct: 64 DKDTFIKLFVAQMKHQDPMEPMKNEQYMTQMAQFTAVEQMSNMATSFEKFAKN 116 >gi|91785635|ref|YP_560841.1| flagellar basal body rod modification protein [Burkholderia xenovorans LB400] gi|91689589|gb|ABE32789.1| putative flagellar hook capping protein [Burkholderia xenovorans LB400] Length = 240 Score = 71.1 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 3/77 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q+ FL+LL+ Q+K+QDPT PM +S+ +QLA + + Q+N+TL L + + +Q Sbjct: 47 QNTFLQLLVAQLKNQDPTNPMDSSQMTSQLAQINTVSGISQLNTTLTSLATQMSAGQQSQ 106 Query: 82 ASSYIGKNITNADGSIS 98 A+ IG + S+S Sbjct: 107 AALLIGSTVLAPGSSVS 123 >gi|242278415|ref|YP_002990544.1| flagellar hook capping protein [Desulfovibrio salexigens DSM 2638] gi|242121309|gb|ACS79005.1| flagellar hook capping protein [Desulfovibrio salexigens DSM 2638] Length = 226 Score = 70.7 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 10/112 (8%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82 L Q FL LL TQ+++QDPT P + + Q+ ++ +++ V N L+ ++ + + Sbjct: 30 LDQVDFLTLLTTQLQYQDPTNPTDNTAMINQMTNYAMLDEDVAQNENLEAIINQLDALAS 89 Query: 83 ---SSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 + IG+ + GS S V T +T+D + GI I + Sbjct: 90 LSTAGLIGEEVMAPGGSFS-------VEGGEATGVTIDLQDDASEVGINIYD 134 >gi|188583763|ref|YP_001927208.1| flagellar hook capping protein [Methylobacterium populi BJ001] gi|179347261|gb|ACB82673.1| flagellar hook capping protein [Methylobacterium populi BJ001] Length = 223 Score = 70.7 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 57/112 (50%), Gaps = 10/112 (8%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN---NLAQASS 84 FL LL TQ+K+Q+P +P+ ++ QL F+ +EQ ++ N++L +L ++ + + AS Sbjct: 32 FLTLLTTQLKNQNPLDPLDTNQFTQQLVQFAGVEQQLKTNASLDTILTNSKAASASSASG 91 Query: 85 YIGKNITN-------ADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129 IG+ IT ADG + + + ++ + I + + T + Sbjct: 92 LIGRTITADGASTDLADGKATWTLTPERAAAKAVVTIKSSDGTVVATKTTTL 143 >gi|34498341|ref|NP_902556.1| basal-body rod modification protein FlgD [Chromobacterium violaceum ATCC 12472] gi|34104195|gb|AAQ60554.1| basal-body rod modification protein FlgD [Chromobacterium violaceum ATCC 12472] Length = 224 Score = 70.7 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 3/95 (3%) Query: 7 VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66 N + S + Q+ FL LL Q+ QDP PM S+ +Q+A SQ+ + Sbjct: 11 ANGGASGNTGSATSAQSLQNNFLTLLTAQLNAQDPLNPMDNSQLTSQMAQISQVSGLQSL 70 Query: 67 NSTLQELLKSNNLAQ---ASSYIGKNITNADGSIS 98 N T+Q+L+ S N +Q A+ IG N+ A +++ Sbjct: 71 NLTMQQLVASQNASQSMMATGMIGNNVLVAGNTLA 105 >gi|237751427|ref|ZP_04581907.1| flagellar basal body rod modification protein [Helicobacter bilis ATCC 43879] gi|229372793|gb|EEO23184.1| flagellar basal body rod modification protein [Helicobacter bilis ATCC 43879] Length = 507 Score = 70.7 bits (172), Expect = 7e-11, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 45/80 (56%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+ +++ ++ L +DAF+KL + Q+K+QDPT PM+ + + Q A +Q+E Sbjct: 7 EVTGSTAAREKKKESAQIANGLDKDAFMKLFLEQLKNQDPTSPMETDKIITQTAQLTQVE 66 Query: 62 QSVQMNSTLQELLKSNNLAQ 81 + T++E+ ++ +Q Sbjct: 67 MQEENKKTMKEVAQAMKASQ 86 >gi|83720138|ref|YP_440800.1| flagellar basal body rod modification protein [Burkholderia thailandensis E264] gi|167617584|ref|ZP_02386215.1| flagellar basal body rod modification protein [Burkholderia thailandensis Bt4] gi|257140549|ref|ZP_05588811.1| flagellar basal body rod modification protein [Burkholderia thailandensis E264] gi|83653963|gb|ABC38026.1| basal-body rod modification protein FlgD [Burkholderia thailandensis E264] Length = 278 Score = 70.7 bits (172), Expect = 7e-11, Method: Composition-based stats. Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 3/88 (3%) Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72 S S + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N+ L Sbjct: 55 ASSLSTTSAADLQTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTALTS 114 Query: 73 L---LKSNNLAQASSYIGKNITNADGSI 97 L L + QA+ IG N+ ++ Sbjct: 115 LSSQLTAGQQTQAAMLIGSNVLAPGNTV 142 >gi|114777403|ref|ZP_01452400.1| Flagellar hook capping protein [Mariprofundus ferrooxydans PV-1] gi|114552185|gb|EAU54687.1| Flagellar hook capping protein [Mariprofundus ferrooxydans PV-1] Length = 221 Score = 70.3 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 33/103 (32%), Positives = 59/103 (57%), Gaps = 6/103 (5%) Query: 11 QQEFSKSKSKKTLGQ-DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69 Q + ++ LG+ D FLKLL+ Q+++Q+P +P ++ +QLA F+ +EQ N+ Sbjct: 12 QAAQTTRTTQNDLGKKDIFLKLLVAQMQNQNPLKPQDPTQMSSQLAQFNMVEQQTSSNAL 71 Query: 70 LQELLKSNNLAQA-----SSYIGKNITNADGSISGVVNAIQVS 107 LQ+L+ +++ +A +SY+GKN+T I+ A S Sbjct: 72 LQQLVDASSTQKATSSNGASYLGKNVTVQQDQINYTGTASNFS 114 >gi|224418357|ref|ZP_03656363.1| flagellar basal body rod modification protein [Helicobacter canadensis MIT 98-5491] gi|253827677|ref|ZP_04870562.1| flagellar biosynthesis protein [Helicobacter canadensis MIT 98-5491] gi|313141888|ref|ZP_07804081.1| flagellar basal body rod modification protein [Helicobacter canadensis MIT 98-5491] gi|253511083|gb|EES89742.1| flagellar biosynthesis protein [Helicobacter canadensis MIT 98-5491] gi|313130919|gb|EFR48536.1| flagellar basal body rod modification protein [Helicobacter canadensis MIT 98-5491] Length = 356 Score = 70.3 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 37/62 (59%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79 LG +AF+KL + Q+K+QDPT PM+ E + Q A +Q+E QM + ++++ + Sbjct: 102 NNGLGTEAFMKLFLEQLKNQDPTAPMETQEILTQTAQLTQVEAQTQMKNAMEQMTTTMQS 161 Query: 80 AQ 81 Q Sbjct: 162 MQ 163 >gi|205373382|ref|ZP_03226186.1| flagellar basal body rod modification protein [Bacillus coahuilensis m4-4] Length = 94 Score = 70.3 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 50/85 (58%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 + I++ + + + + + LGQDAF+K+L+ ++++QDP PM+ + +AQLA FSQ+ Sbjct: 3 ISIDSNLLLSTYQNEQRQVDNKLGQDAFMKILMAELQNQDPMNPMQDKDFIAQLATFSQL 62 Query: 61 EQSVQMNSTLQELLKSNNLAQASSY 85 E+ M+ +L + Q S+ Sbjct: 63 EELTGMSDSLDSMNAIQQQNQLLSF 87 >gi|307719962|ref|YP_003891102.1| flagellar hook capping protein [Sulfurimonas autotrophica DSM 16294] gi|306978055|gb|ADN08090.1| flagellar hook capping protein [Sulfurimonas autotrophica DSM 16294] Length = 220 Score = 70.3 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 3/83 (3%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78 K LG+D F+KLL+ Q+++QDPTEPM + + Q + + +E + + L++L S Sbjct: 23 PKGVLGKDDFMKLLLVQLQYQDPTEPMDTEKILTQTSQLASLESADNTKTALEKLAASLG 82 Query: 79 LAQ---ASSYIGKNITNADGSIS 98 AQ S IGK +I+ Sbjct: 83 NAQQFSTISAIGKTADLGSDAIA 105 >gi|188534171|ref|YP_001907968.1| flagellar basal body rod modification protein [Erwinia tasmaniensis Et1/99] gi|188029213|emb|CAO97085.1| Flagellar biosynthesis, initiation of hook assembly [Erwinia tasmaniensis Et1/99] Length = 223 Score = 70.3 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q FL LL+TQ+K+QDPT PM S+ QLA + + ++N+TL + + S Q Sbjct: 31 QGNFLTLLVTQLKNQDPTNPMDNSQLTTQLAQINTLSGVEKLNTTLGSISGQITSGQSLQ 90 Query: 82 ASSYIGKNITNADGSI 97 AS+ IG + I Sbjct: 91 ASTLIGHGVMVNGSQI 106 >gi|317152825|ref|YP_004120873.1| flagellar hook capping protein [Desulfovibrio aespoeensis Aspo-2] gi|316943076|gb|ADU62127.1| flagellar hook capping protein [Desulfovibrio aespoeensis Aspo-2] Length = 225 Score = 70.3 bits (171), Expect = 9e-11, Method: Composition-based stats. Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 3/97 (3%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 + + + + S + +LG FL LLITQ+++QDPTEP+ +E V Q+ FSQ+E Sbjct: 11 SLLTASSETADTSTASTSLGSMDFLNLLITQLQYQDPTEPVDNTEMVNQMTQFSQLESLT 70 Query: 65 QMNSTLQE---LLKSNNLAQASSYIGKNITNADGSIS 98 + L E L +++ A SY+GK + + S+S Sbjct: 71 SIEDKLDELTSSLSASSTTSAISYLGKEVEASGYSLS 107 >gi|296157457|ref|ZP_06840292.1| flagellar hook capping protein [Burkholderia sp. Ch1-1] gi|295892229|gb|EFG72012.1| flagellar hook capping protein [Burkholderia sp. Ch1-1] Length = 240 Score = 70.3 bits (171), Expect = 9e-11, Method: Composition-based stats. Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 3/77 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q+ FL+LL+ Q+K+QDPT PM +S+ +QLA + + Q+N+TL L + + +Q Sbjct: 47 QNTFLQLLVAQLKNQDPTNPMDSSQMTSQLAQINTVSGISQLNTTLTSLATQMSAGQQSQ 106 Query: 82 ASSYIGKNITNADGSIS 98 A+ IG + S+S Sbjct: 107 AALLIGSTVLAPGSSVS 123 >gi|167835110|ref|ZP_02461993.1| flagellar basal body rod modification protein [Burkholderia thailandensis MSMB43] Length = 268 Score = 70.3 bits (171), Expect = 9e-11, Method: Composition-based stats. Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 4/96 (4%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 T N + S L Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Sbjct: 38 TNANSNVASSLSTTSAADL-QTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIA 96 Query: 65 QMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 Q+N+ L L + ++ QA+ IG N+ ++ Sbjct: 97 QLNTALTSLSSQITASQQTQAAMLIGSNVLAPGNTV 132 >gi|87307399|ref|ZP_01089544.1| probable basal-body rod modification protein FlgD [Blastopirellula marina DSM 3645] gi|87290139|gb|EAQ82028.1| probable basal-body rod modification protein FlgD [Blastopirellula marina DSM 3645] Length = 169 Score = 70.3 bits (171), Expect = 9e-11, Method: Composition-based stats. Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS 84 D FLKL+I ++++QDP EPMK SE + Q+ + + Q+++TL +L N+ A++ Sbjct: 1 MDQFLKLMIAELQNQDPMEPMKNSEMLEQIGQIRNITATEQLSTTLTNVLDGQNILSATT 60 Query: 85 YIGKNI---TNADGSISGVVNAIQVSST 109 IG + T+ + GVV Q++ Sbjct: 61 LIGGQVQALTDQGDVVFGVVTGAQITPN 88 >gi|148258442|ref|YP_001243027.1| putative flagellar basal-body rod modification protein FlgD [Bradyrhizobium sp. BTAi1] gi|146410615|gb|ABQ39121.1| putative flagellar basal-body rod modification protein FlgD [Bradyrhizobium sp. BTAi1] Length = 235 Score = 70.0 bits (170), Expect = 9e-11, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 3/90 (3%) Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 + + +++ +FL LL TQ+ HQ+P +P+ ++ QL F+Q+EQ ++ N+ L+ Sbjct: 26 KPSASARTGIADNFQSFLTLLTTQLNHQNPLDPLNVNQFTQQLVQFAQVEQQLKGNTLLE 85 Query: 72 ELL---KSNNLAQASSYIGKNITNADGSIS 98 L+ KS QA +G+ S Sbjct: 86 RLVEAQKSTQSTQALMLVGRTAVVDGSEAS 115 >gi|163853492|ref|YP_001641535.1| flagellar hook capping protein [Methylobacterium extorquens PA1] gi|163665097|gb|ABY32464.1| flagellar hook capping protein [Methylobacterium extorquens PA1] Length = 226 Score = 70.0 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 29/79 (36%), Positives = 50/79 (63%), Gaps = 4/79 (5%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN---NLAQASS 84 FL LL TQ+K+Q+P +P+ ++ QL F+ +EQ ++ NS+L +L ++ + + AS Sbjct: 35 FLTLLTTQLKNQNPLDPLDTNQFTQQLVQFAGVEQQLKTNSSLDTILTNSKAASASSASG 94 Query: 85 YIGKNITNADGSISGVVNA 103 IG+ IT ADG+ + + N Sbjct: 95 LIGRTIT-ADGATTDLTNG 112 >gi|224825163|ref|ZP_03698269.1| flagellar hook capping protein [Lutiella nitroferrum 2002] gi|224602834|gb|EEG09011.1| flagellar hook capping protein [Lutiella nitroferrum 2002] Length = 230 Score = 70.0 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 3/77 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ--- 81 Q+ FL LL TQ+K QDP PM+ +E +Q+A SQ+ ++ ++ LL+S Q Sbjct: 34 QNRFLTLLTTQLKSQDPLNPMENNEITSQMAQISQVTGLENLSKSINSLLQSQYGTQSLL 93 Query: 82 ASSYIGKNITNADGSIS 98 A+S +GK+ +++ Sbjct: 94 AASLVGKSAMIDGNTLT 110 >gi|254563422|ref|YP_003070517.1| flagellar basal-body rod modification protein [Methylobacterium extorquens DM4] gi|254270700|emb|CAX26704.1| putative flagellar basal-body rod modification protein (Synonyms : FlgD flaV, fla FIV, fla FVI) [Methylobacterium extorquens DM4] Length = 226 Score = 70.0 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 29/79 (36%), Positives = 50/79 (63%), Gaps = 4/79 (5%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN---NLAQASS 84 FL LL TQ+K+Q+P +P+ ++ QL F+ +EQ ++ NS+L +L ++ + + AS Sbjct: 35 FLTLLTTQLKNQNPLDPLDTNQFTQQLVQFAGVEQQLKTNSSLDTILTNSKAASASSASG 94 Query: 85 YIGKNITNADGSISGVVNA 103 IG+ IT ADG+ + + N Sbjct: 95 LIGRTIT-ADGAATDLTNG 112 >gi|315497624|ref|YP_004086428.1| flagellar hook capping protein [Asticcacaulis excentricus CB 48] gi|315415636|gb|ADU12277.1| flagellar hook capping protein [Asticcacaulis excentricus CB 48] Length = 224 Score = 70.0 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--LKSNNLAQA 82 + FL LL QIK+QDP PM +++ QL ++ +EQ ++ N L+ L L + N+A + Sbjct: 29 YETFLGLLTAQIKNQDPLSPMDSTQWTNQLVQYTSVEQQLKANEYLKSLVGLGAGNMASS 88 Query: 83 SSYIGKN 89 + IGK Sbjct: 89 VNMIGKT 95 >gi|300716217|ref|YP_003741020.1| flagellar biosynthesis, initiation of hook assembly [Erwinia billingiae Eb661] gi|299062053|emb|CAX59169.1| Flagellar biosynthesis, initiation of hook assembly [Erwinia billingiae Eb661] Length = 223 Score = 70.0 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q FL LL+TQ+++QDPT PM S+ QLA + + ++N+TL + + S Q Sbjct: 31 QSNFLTLLVTQLQNQDPTNPMDNSQLTTQLAQINTLSGIEKLNTTLGSISGQINSGQSLQ 90 Query: 82 ASSYIGKNITNADGSI 97 A++ IG + + Sbjct: 91 ATTLIGHGVMVDGTQV 106 >gi|239628986|ref|ZP_04672017.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519132|gb|EEQ58998.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 213 Score = 70.0 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 15/119 (12%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77 K + + FL L++ Q+K+QD P+ ++ V QLA S M+Q QM + Sbjct: 68 ADDKMVSMEDFLTLMVAQLKNQDFMNPVDDTQYVTQLAQISTMQQMEQM-------AYNA 120 Query: 78 NLAQASSYIGKNITNADGSIS-------GVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129 +S +GK ++ A ++S G+V+ + + I VD + + I Sbjct: 121 KSTYVTSLVGKYVSAAKFTVSGELKKSEGLVDKVSLLDE-KFVIYVDGEAYDMDEIMEI 178 >gi|163803168|ref|ZP_02197051.1| flagellar basal body rod modification protein D [Vibrio sp. AND4] gi|159173068|gb|EDP57901.1| flagellar basal body rod modification protein D [Vibrio sp. AND4] Length = 228 Score = 70.0 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 3/76 (3%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE---LLKSNNLAQA 82 + F+ L++ QI++QDP P+ +E V+QLA FSQ++ + M +Q LL + + Sbjct: 41 NEFISLMVAQIQNQDPLNPLDGTEYVSQLAQFSQVQSTENMAMLMQNSMVLLDNMQVLST 100 Query: 83 SSYIGKNITNADGSIS 98 + +G+ + + Sbjct: 101 AGLVGQTVYVSANEFE 116 >gi|260768783|ref|ZP_05877717.1| flagellar basal-body rod modification protein FlgD [Vibrio furnissii CIP 102972] gi|260616813|gb|EEX41998.1| flagellar basal-body rod modification protein FlgD [Vibrio furnissii CIP 102972] Length = 234 Score = 70.0 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 62/129 (48%), Gaps = 12/129 (9%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 T + + + + + S +L + F+ L++ Q+++QDP P ++ V QLA F+Q++ + Sbjct: 15 TVQSASTKTTTNANSTSSL-YNEFITLMVAQVQNQDPLNPTDGTQYVTQLAQFAQVQSTD 73 Query: 65 QMNSTLQE---LLKSNNLAQASSYIGKNIT--------NADGSISGVVNAIQVSSTGLTA 113 M S L ++ + + + +G++++ + +G+ +G + S+T Sbjct: 74 NMVSILNNNAIMMDNLQVLTTAGLVGQSVSVRTDTLHADGEGTYNGSIELTSSSNTVTLE 133 Query: 114 ITVDNTEIP 122 + + + Sbjct: 134 LVDEAGNVT 142 >gi|307731364|ref|YP_003908588.1| flagellar hook capping protein [Burkholderia sp. CCGE1003] gi|307585899|gb|ADN59297.1| flagellar hook capping protein [Burkholderia sp. CCGE1003] Length = 240 Score = 70.0 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 3/77 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q+ FL LL+ Q+K+QDPT PM +S+ +QLA + + Q+N+TL L + + +Q Sbjct: 47 QNTFLSLLVAQLKNQDPTNPMDSSQMTSQLAQINTVSGISQLNTTLSSLATQMSAGQQSQ 106 Query: 82 ASSYIGKNITNADGSIS 98 A+ IG + S+S Sbjct: 107 AALLIGSTVLAPGSSVS 123 >gi|288958685|ref|YP_003449026.1| flagellar basal-body rod modification protein [Azospirillum sp. B510] gi|288910993|dbj|BAI72482.1| flagellar basal-body rod modification protein [Azospirillum sp. B510] Length = 251 Score = 69.6 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 28/98 (28%), Positives = 51/98 (52%), Gaps = 5/98 (5%) Query: 5 TEVNPTQQEFSKSKSKKTLGQD--AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 T P + + K LG + FL +L TQ+K+QDP +P+ ++ QL F+ +EQ Sbjct: 34 TSKTPQTDAQKTASATKGLGDNFQTFLTMLTTQMKNQDPLKPLDTNDMTKQLVDFANVEQ 93 Query: 63 SVQMNSTLQELLKSNNLAQAS---SYIGKNITNADGSI 97 ++ NS L +L++ + AS +Y+G+ + + Sbjct: 94 NIGTNSRLDKLVQLQSAGTASTNLAYLGRTVAFQGDTF 131 >gi|187925762|ref|YP_001897404.1| flagellar basal body rod modification protein [Burkholderia phytofirmans PsJN] gi|187716956|gb|ACD18180.1| flagellar hook capping protein [Burkholderia phytofirmans PsJN] Length = 240 Score = 69.6 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 3/77 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q+ FL+LL+ Q+K+QDPT PM +S+ +QLA + + Q+N+TL L + + +Q Sbjct: 47 QNTFLQLLVAQLKNQDPTNPMDSSQMTSQLAQINTVSGISQLNTTLSSLATQMSAGQQSQ 106 Query: 82 ASSYIGKNITNADGSIS 98 A+ IG + S++ Sbjct: 107 AALLIGSTVLAPGSSVA 123 >gi|238785498|ref|ZP_04629481.1| Flagellar hook capping protein [Yersinia bercovieri ATCC 43970] gi|238713600|gb|EEQ05629.1| Flagellar hook capping protein [Yersinia bercovieri ATCC 43970] Length = 230 Score = 69.6 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 8/106 (7%) Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65 + + S S Q++FL LL+ Q+K+QDPT PM+ +E QLA + + + Sbjct: 15 NSSSGTNTNATSGSTSQDLQNSFLTLLVAQLKNQDPTNPMQNNELTTQLAQINTVSGIEK 74 Query: 66 MNSTLQEL---LKSNNLAQASSYIGKNITNAD-----GSISGVVNA 103 +N+TL + + S+ QASS IG + GS GVV Sbjct: 75 LNTTLGSISGQIDSSQSLQASSLIGHGVMIPGTNVLAGSKDGVVTT 120 >gi|325529013|gb|EGD06026.1| flagellar basal body rod modification protein [Burkholderia sp. TJI49] Length = 229 Score = 69.6 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 3/91 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 S + + + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N++L Sbjct: 3 TNNVSTTGTSASDLQATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTSL 62 Query: 71 QEL---LKSNNLAQASSYIGKNITNADGSIS 98 L L + QA+ IG N+ +++ Sbjct: 63 TSLSTQLAAGQQTQAALLIGSNVLAPGNTVA 93 >gi|295678059|ref|YP_003606583.1| flagellar hook capping protein [Burkholderia sp. CCGE1002] gi|295437902|gb|ADG17072.1| flagellar hook capping protein [Burkholderia sp. CCGE1002] Length = 235 Score = 69.6 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 27/77 (35%), Positives = 47/77 (61%), Gaps = 3/77 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q+ FL+LL+ Q+K+QDPT PM +S+ +QLA S ++ +N++L L L ++ AQ Sbjct: 42 QNTFLQLLVAQLKNQDPTNPMDSSQMTSQLAQISTVQGISNLNTSLTSLSTQLSASQQAQ 101 Query: 82 ASSYIGKNITNADGSIS 98 ++ IG + S++ Sbjct: 102 SALLIGSTVLAPGNSVT 118 >gi|118475635|ref|YP_891219.1| flagellar basal body rod modification protein [Campylobacter fetus subsp. fetus 82-40] gi|118414861|gb|ABK83281.1| flagellar hook assembly protein [Campylobacter fetus subsp. fetus 82-40] Length = 263 Score = 69.6 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 24/79 (30%), Positives = 46/79 (58%), Gaps = 3/79 (3%) Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72 + + L +DAFLKLL+ ++++QDPTEPM +++ + Q + + +E N +++ Sbjct: 35 SGTGTNPYSQLDKDAFLKLLLVELQYQDPTEPMDSAKMLEQTSQLATLEMQENTNKVMKQ 94 Query: 73 L---LKSNNLAQASSYIGK 88 L ++S+ A S +GK Sbjct: 95 LTTQMQSSLSMTAMSALGK 113 >gi|83950599|ref|ZP_00959332.1| Possible FlgD protein [Roseovarius nubinhibens ISM] gi|83838498|gb|EAP77794.1| Possible FlgD protein [Roseovarius nubinhibens ISM] Length = 227 Score = 69.6 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 36/65 (55%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 TQ E S + + FLK+L Q+++QDP P++ ++ QLA FS +EQ V+ N Sbjct: 20 STQAESDSSSRAISADFETFLKMLTVQMRNQDPLNPVEGTDFAVQLATFSTVEQQVRTND 79 Query: 69 TLQEL 73 L L Sbjct: 80 LLGAL 84 >gi|206558967|ref|YP_002229727.1| flagellar basal body rod modification protein [Burkholderia cenocepacia J2315] gi|198035004|emb|CAR50876.1| basal-body rod modification protein FlgD [Burkholderia cenocepacia J2315] Length = 234 Score = 69.6 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 3/97 (3%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 T+ T S + + + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Sbjct: 6 TDTMNTNNVSSTNGTSASDLQATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIA 65 Query: 65 QMNSTLQEL---LKSNNLAQASSYIGKNITNADGSIS 98 Q+N++L L L + QA+ IG N+ S++ Sbjct: 66 QLNTSLTSLSTQLAAGQQTQAALLIGTNVLAPGNSVA 102 >gi|218532350|ref|YP_002423166.1| flagellar hook capping protein [Methylobacterium chloromethanicum CM4] gi|218524653|gb|ACK85238.1| flagellar hook capping protein [Methylobacterium chloromethanicum CM4] Length = 226 Score = 69.6 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 29/79 (36%), Positives = 50/79 (63%), Gaps = 4/79 (5%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN---NLAQASS 84 FL LL TQ+K+Q+P +P+ ++ QL F+ +EQ ++ NS+L +L ++ + + AS Sbjct: 35 FLTLLTTQLKNQNPLDPLDTNQFTQQLVQFAGVEQQLKTNSSLDTILTNSKAASASSASG 94 Query: 85 YIGKNITNADGSISGVVNA 103 IG+ IT ADG+ + + N Sbjct: 95 LIGRTIT-ADGATTDLTNG 112 >gi|167579487|ref|ZP_02372361.1| flagellar basal body rod modification protein [Burkholderia thailandensis TXDOH] Length = 289 Score = 69.2 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 3/88 (3%) Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72 S S + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N+ L Sbjct: 66 ASSLSTTSAADLQTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTALTS 125 Query: 73 L---LKSNNLAQASSYIGKNITNADGSI 97 L L + QA+ IG N+ ++ Sbjct: 126 LSSQLTAGQQTQAAMLIGSNVLAPGNTV 153 >gi|291276998|ref|YP_003516770.1| flagellar-hook assembly protein FlgD [Helicobacter mustelae 12198] gi|290964192|emb|CBG40038.1| Putative flagellar-hook assembly protein, FlgD [Helicobacter mustelae 12198] Length = 279 Score = 69.2 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 39/68 (57%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 K L +DAF+KL + Q+K+QDPT PM+ + + Q A +Q+E + T++E+ + Sbjct: 23 PKIANGLDKDAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMKEVASA 82 Query: 77 NNLAQASS 84 + S+ Sbjct: 83 MQSTKESN 90 >gi|323527714|ref|YP_004229867.1| flagellar hook capping protein [Burkholderia sp. CCGE1001] gi|323384716|gb|ADX56807.1| flagellar hook capping protein [Burkholderia sp. CCGE1001] Length = 243 Score = 69.2 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 3/77 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q+ FL LL+ Q+K+QDPT PM +S+ +QLA + + Q+N+TL L + + +Q Sbjct: 50 QNTFLSLLVAQLKNQDPTNPMDSSQMTSQLAQINTVSGISQLNTTLSSLATQMSAGQQSQ 109 Query: 82 ASSYIGKNITNADGSIS 98 A+ IG + SIS Sbjct: 110 AALLIGSTVLAPGSSIS 126 >gi|150019074|ref|YP_001311328.1| flagellar hook capping protein [Clostridium beijerinckii NCIMB 8052] gi|149905539|gb|ABR36372.1| flagellar hook capping protein [Clostridium beijerinckii NCIMB 8052] Length = 339 Score = 69.2 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 59/130 (45%), Gaps = 15/130 (11%) Query: 3 INTEVNPTQQEFSK--SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 +N + T +K K+ T+ +++FLK+L Q+ + DPT+ +S V+Q+A F+ M Sbjct: 13 VNVVSSGTTDRGTKILRKTDNTMDKNSFLKILSAQLSNLDPTQNQDSSAYVSQMAQFASM 72 Query: 61 EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGS-----ISGVVNAIQVSSTGLTA-I 114 EQ +N+T+ + +G+ + + I G V + S G + Sbjct: 73 EQMQNLNTTMSDSSYQQ-------MVGRTVITNEKDNNGSYIQGYVTQVLKESGGTYLNM 125 Query: 115 TVDNTEIPIT 124 V+ E I Sbjct: 126 LVNGKEAKIA 135 >gi|240140912|ref|YP_002965392.1| putative flagellar basal-body rod modification protein (Synonyms : FlgD flaV, fla FIV, fla FVI) [Methylobacterium extorquens AM1] gi|240010889|gb|ACS42115.1| putative flagellar basal-body rod modification protein (Synonyms : FlgD flaV, fla FIV, fla FVI) [Methylobacterium extorquens AM1] Length = 226 Score = 69.2 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 29/79 (36%), Positives = 50/79 (63%), Gaps = 4/79 (5%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN---NLAQASS 84 FL LL TQ+K+Q+P +P+ ++ QL F+ +EQ ++ NS+L +L ++ + + AS Sbjct: 35 FLTLLTTQLKNQNPLDPLDTNQFTQQLVQFAGVEQQLKTNSSLDTILTNSKAASASSASG 94 Query: 85 YIGKNITNADGSISGVVNA 103 IG+ IT ADG+ + + N Sbjct: 95 LIGRTIT-ADGAATDLTNG 112 >gi|170694391|ref|ZP_02885545.1| flagellar hook capping protein [Burkholderia graminis C4D1M] gi|170140814|gb|EDT08988.1| flagellar hook capping protein [Burkholderia graminis C4D1M] Length = 243 Score = 69.2 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 3/77 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q+ FL LL+ Q+K+QDPT PM +S+ +QLA + + Q+N+TL L + + +Q Sbjct: 50 QNTFLSLLVAQLKNQDPTNPMDSSQMTSQLAQINTVSGISQLNTTLSSLATQMSAGQQSQ 109 Query: 82 ASSYIGKNITNADGSIS 98 A+ IG + S+S Sbjct: 110 AALLIGSTVLAPGSSVS 126 >gi|322378867|ref|ZP_08053284.1| flagellar basal body rod modification protein [Helicobacter suis HS1] gi|322380409|ref|ZP_08054615.1| flagellar basal body rod modification protein [Helicobacter suis HS5] gi|321147199|gb|EFX41893.1| flagellar basal body rod modification protein [Helicobacter suis HS5] gi|321148677|gb|EFX43160.1| flagellar basal body rod modification protein [Helicobacter suis HS1] Length = 446 Score = 69.2 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 53/101 (52%), Gaps = 3/101 (2%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+ +++ + K L +DAF+KL + Q+K+QDPT PM+ + ++Q A SQ+E Sbjct: 19 EVTGAKAAMEKKKHEPKVANGLNKDAFMKLFLEQLKNQDPTAPMETDKIISQTAQLSQVE 78 Query: 62 QSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVN 102 + ++E+ + + ++ K++ ++ G + + Sbjct: 79 MQEENKKAMKEVADAMQSTKETN---KSLKDSQGKLQDTLE 116 >gi|332162902|ref|YP_004299479.1| Basal-body rod modification protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318604251|emb|CBY25749.1| flagellar basal-body rod modification protein FlgD [Yersinia enterocolitica subsp. palearctica Y11] gi|325667132|gb|ADZ43776.1| Basal-body rod modification protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330863352|emb|CBX73475.1| hypothetical protein YEW_ES20700 [Yersinia enterocolitica W22703] Length = 219 Score = 69.2 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 3/76 (3%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA--- 82 + F+ LL+ QI++QDP PM +E V Q+A SQ++ + M L+ QA Sbjct: 32 NQFMTLLVAQIQNQDPLNPMDGTEFVGQMAQLSQVQSTENMAKMLKSNTVQMERVQAMAT 91 Query: 83 SSYIGKNITNADGSIS 98 + +G+ + + Sbjct: 92 VNLVGQQVMVESDEVE 107 >gi|312962589|ref|ZP_07777079.1| basal-body rod modification protein FlgD [Pseudomonas fluorescens WH6] gi|311283169|gb|EFQ61760.1| basal-body rod modification protein FlgD [Pseudomonas fluorescens WH6] Length = 241 Score = 69.2 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 36/128 (28%), Positives = 60/128 (46%), Gaps = 11/128 (8%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 T+ + + ++LG+DAFL+LL+TQ+K+Q+P P VAQLA FS +E Sbjct: 24 TDNSSLGDASKAATGNQSLGKDAFLQLLVTQLKNQNPLSPQDNGAFVAQLAQFSSLEGIN 83 Query: 65 QMNS---TLQELLKSNNLAQASSYIGKNI--------TNADGSISGVVNAIQVSSTGLTA 113 +N + S+ QASS +G++I + S++G V + Sbjct: 84 TLNDSVNNISSNFSSSQALQASSLVGRSIIPQTDKALVDTSKSMTGSVAVTAATGNVAVK 143 Query: 114 ITVDNTEI 121 IT + + Sbjct: 144 ITDKDGNV 151 >gi|238799106|ref|ZP_04642562.1| Flagellar hook capping protein [Yersinia mollaretii ATCC 43969] gi|238717053|gb|EEQ08913.1| Flagellar hook capping protein [Yersinia mollaretii ATCC 43969] Length = 230 Score = 69.2 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 3/95 (3%) Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65 + S S Q++FL LL+ Q+K+QDPT PM+ +E QLA + + + Sbjct: 15 NSTSGTNSTAASGSTSQDLQNSFLTLLVAQLKNQDPTNPMQNNELTTQLAQINTVSGIEK 74 Query: 66 MNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 +N+TL + + S+ QASS IG + ++ Sbjct: 75 LNTTLGSISGQIDSSQSLQASSLIGHGVMIPGTNV 109 >gi|146305249|ref|YP_001185714.1| flagellar basal body rod modification protein [Pseudomonas mendocina ymp] gi|145573450|gb|ABP82982.1| flagellar hook capping protein [Pseudomonas mendocina ymp] Length = 225 Score = 69.2 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 44/83 (53%), Gaps = 3/83 (3%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM---EQSVQMNSTLQELLKSNNLAQA 82 + FL L++ QI++QDPT+P+ ++E + Q A SQ+ E ++ + LL + A Sbjct: 34 NNFLTLMVAQIQNQDPTKPVDSTEFLNQFAAMSQVKSLENMASLSKSNLVLLDNLQTLTA 93 Query: 83 SSYIGKNITNADGSISGVVNAIQ 105 + +G+ + A + + ++ Sbjct: 94 AGLVGQEVKVATEKLELGADKVK 116 >gi|153948005|ref|YP_001399633.1| flagellar basal body rod modification protein [Yersinia pseudotuberculosis IP 31758] gi|152959500|gb|ABS46961.1| basal-body rod modification protein FlgD [Yersinia pseudotuberculosis IP 31758] Length = 218 Score = 69.2 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 3/76 (3%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE---LLKSNNLAQA 82 + F+ LL+ QIK+QDP P +E V+Q+A SQ++ + M L+ + Sbjct: 31 NQFMTLLVAQIKNQDPLNPADGTEFVSQMAQLSQVQATENMAKLLKSNTVQMAKMQTMAT 90 Query: 83 SSYIGKNITNADGSIS 98 ++ +G+ + ++ Sbjct: 91 ANLVGQQVMVESNEMT 106 >gi|296282280|ref|ZP_06860278.1| flagellar hook capping protein [Citromicrobium bathyomarinum JL354] Length = 102 Score = 69.2 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 24/80 (30%), Positives = 47/80 (58%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 T + ++ ++ LGQ FL+LL Q++ QDP EP+ E +AQ+A FS + + Sbjct: 11 TSASSKPNTNTQGRTMDQLGQADFLRLLTVQMQQQDPFEPVDNKEMLAQMAQFSSLAGTA 70 Query: 65 QMNSTLQELLKSNNLAQASS 84 + N+TL+++++ + A++ Sbjct: 71 ETNTTLEKIVEKLDALIAAT 90 >gi|238793997|ref|ZP_04637615.1| Flagellar hook capping protein [Yersinia intermedia ATCC 29909] gi|238726629|gb|EEQ18165.1| Flagellar hook capping protein [Yersinia intermedia ATCC 29909] Length = 230 Score = 69.2 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 4/96 (4%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 T + + L Q++FL LL+ Q+K+QDPT PM+ +E QLA + + Sbjct: 15 TNATGANSTTGSGSTSQDL-QNSFLTLLVAQLKNQDPTNPMQNNELTTQLAQINTVSGIE 73 Query: 65 QMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 ++N+TL + + S+ QASS IG + ++ Sbjct: 74 KLNTTLGSISGQIDSSQSLQASSLIGHGVMIPGTTV 109 >gi|167948871|ref|ZP_02535945.1| flagellar basal body rod modification protein [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 113 Score = 68.8 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 2/76 (2%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79 + L + F+ L++T++ HQDP +PM+ +E Q++ F+ + +N + L S +L Sbjct: 25 DQGLEMEDFMNLMVTELTHQDPFKPMENTELATQISQFAAVSGIDDLNKSFTGLSSSMHL 84 Query: 80 AQASSYIGKNITNADG 95 ++ G+ A G Sbjct: 85 RSGAT--GRQFVGAPG 98 >gi|126730148|ref|ZP_01745960.1| Possible FlgD protein [Sagittula stellata E-37] gi|126709528|gb|EBA08582.1| Possible FlgD protein [Sagittula stellata E-37] Length = 188 Score = 68.8 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 3/62 (4%) Query: 31 LLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQASSYIG 87 +L Q+++QDP P+ ++E QLA FS +EQ VQ N L+ + L N+L + +IG Sbjct: 1 MLTVQVQNQDPLNPVDSTEYATQLATFSSVEQQVQTNELLRNISATLGGNSLNEFGRWIG 60 Query: 88 KN 89 Sbjct: 61 ME 62 >gi|172061973|ref|YP_001809625.1| flagellar basal body rod modification protein [Burkholderia ambifaria MC40-6] gi|171994490|gb|ACB65409.1| flagellar hook capping protein [Burkholderia ambifaria MC40-6] Length = 248 Score = 68.8 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 3/91 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 + S + + + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N++L Sbjct: 25 TRNVSTTGTSASDLQATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTSL 84 Query: 71 QEL---LKSNNLAQASSYIGKNITNADGSIS 98 L L + QA+ IG N+ ++ Sbjct: 85 TSLSSQLAAGQQTQAALLIGTNVLAPGNGVA 115 >gi|186477696|ref|YP_001859166.1| flagellar basal body rod modification protein [Burkholderia phymatum STM815] gi|184194155|gb|ACC72120.1| flagellar hook capping protein [Burkholderia phymatum STM815] Length = 237 Score = 68.8 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 3/77 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q+ FL+LLI Q+K+QDPT PM +S+ +QLA + + Q+NS+L L L +N Q Sbjct: 44 QNTFLQLLIAQMKNQDPTSPMDSSQMTSQLAQINTVTGIGQLNSSLTSLASQLTTNQQTQ 103 Query: 82 ASSYIGKNITNADGSIS 98 A++ I + S S Sbjct: 104 AANLINSTVLAPGDSFS 120 >gi|302382559|ref|YP_003818382.1| flagellar hook capping protein [Brevundimonas subvibrioides ATCC 15264] gi|302193187|gb|ADL00759.1| flagellar hook capping protein [Brevundimonas subvibrioides ATCC 15264] Length = 222 Score = 68.8 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQD--AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 ++ T+ + ++ +L + FL LL +Q+K+QDP P+ +++ QL S + Sbjct: 2 VDAVTTTTEAASRTTAARTSLTSNFETFLSLLTSQLKNQDPLSPLDSNQFTQQLTQMSGV 61 Query: 61 EQSVQMNSTLQE---LLKSNNLAQASSYIGKNITN 92 EQ + N L + L A++YIGK+ T Sbjct: 62 EQQLMTNDLLTSLLAAQQGGGLGGAANYIGKDATA 96 >gi|115353119|ref|YP_774958.1| flagellar basal body rod modification protein [Burkholderia ambifaria AMMD] gi|115283107|gb|ABI88624.1| flagellar hook capping protein [Burkholderia ambifaria AMMD] Length = 248 Score = 68.8 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 3/91 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 S + + + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N++L Sbjct: 25 TSNVSTTGTSASDLQATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTSL 84 Query: 71 QEL---LKSNNLAQASSYIGKNITNADGSIS 98 L L + QA+ IG N+ ++ Sbjct: 85 TSLSSQLAAGQQTQAALLIGTNVLAPGNGVA 115 >gi|118581833|ref|YP_903083.1| flagellar hook capping protein [Pelobacter propionicus DSM 2379] gi|118504543|gb|ABL01026.1| flagellar hook capping protein [Pelobacter propionicus DSM 2379] Length = 220 Score = 68.8 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 10/117 (8%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77 KS + FL+L I Q+++QDP P A+ + QL+ S +EQS + L LL + Sbjct: 19 KSSLGMDSSDFLQLFIAQMQYQDPLAPTDATAMMNQLSQLSLVEQSYNQTTALSNLLAAQ 78 Query: 78 N---LAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 N + S+IGK + + I T ++ + + T + IS+ Sbjct: 79 NNSLSMGSVSFIGKTVKANG-------DDIVFDGTSSPSLQYNLSSASAATTLTISD 128 >gi|254251190|ref|ZP_04944508.1| Flagellar hook capping protein [Burkholderia dolosa AUO158] gi|124893799|gb|EAY67679.1| Flagellar hook capping protein [Burkholderia dolosa AUO158] Length = 245 Score = 68.8 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 3/91 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 S + + + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N++L Sbjct: 25 TNNVSTNGTSASDLQATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTSL 84 Query: 71 QEL---LKSNNLAQASSYIGKNITNADGSIS 98 L L + QA+ IG N+ ++ Sbjct: 85 TSLSTQLAAGQQTQAALLIGSNVLAPGNGVA 115 >gi|107023954|ref|YP_622281.1| flagellar basal body rod modification protein [Burkholderia cenocepacia AU 1054] gi|116691041|ref|YP_836664.1| flagellar basal body rod modification protein [Burkholderia cenocepacia HI2424] gi|105894143|gb|ABF77308.1| flagellar hook capping protein [Burkholderia cenocepacia AU 1054] gi|116649130|gb|ABK09771.1| flagellar hook capping protein [Burkholderia cenocepacia HI2424] Length = 248 Score = 68.8 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 3/97 (3%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 T+ T S + + + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Sbjct: 20 TDTMNTNNVSSTNGTSASDLQATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIA 79 Query: 65 QMNSTLQEL---LKSNNLAQASSYIGKNITNADGSIS 98 Q+N++L L L + QA+ IG N+ S++ Sbjct: 80 QLNTSLTSLSTQLAAGQQTQAALLIGTNVLAPGNSVA 116 >gi|242310748|ref|ZP_04809903.1| flagellar basal body rod modification protein [Helicobacter pullorum MIT 98-5489] gi|239523146|gb|EEQ63012.1| flagellar basal body rod modification protein [Helicobacter pullorum MIT 98-5489] Length = 379 Score = 68.8 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 42/78 (53%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 NT T + + LG +AF++L + Q+K+QDPT PM+ E + Q A +Q+E Sbjct: 98 NTFPGDTPIIKDEEEDNNGLGTEAFMRLFLEQLKNQDPTAPMETQEILTQTAQLTQVEAQ 157 Query: 64 VQMNSTLQELLKSNNLAQ 81 QM + ++++ + Q Sbjct: 158 TQMKNAMEQMTTTMQSMQ 175 >gi|221199738|ref|ZP_03572781.1| basal-body rod modification protein FlgD [Burkholderia multivorans CGD2M] gi|221208657|ref|ZP_03581657.1| basal-body rod modification protein FlgD [Burkholderia multivorans CGD2] gi|221215570|ref|ZP_03588533.1| basal-body rod modification protein FlgD [Burkholderia multivorans CGD1] gi|221164558|gb|EED97041.1| basal-body rod modification protein FlgD [Burkholderia multivorans CGD1] gi|221171468|gb|EEE03915.1| basal-body rod modification protein FlgD [Burkholderia multivorans CGD2] gi|221179977|gb|EEE12381.1| basal-body rod modification protein FlgD [Burkholderia multivorans CGD2M] Length = 247 Score = 68.8 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 3/91 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 S + + + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N++L Sbjct: 25 TNNVSTTGTSASDLQATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTSL 84 Query: 71 QEL---LKSNNLAQASSYIGKNITNADGSIS 98 L L + QA+ IG N+ +++ Sbjct: 85 TSLSTQLAAGQQTQAALLIGSNVLAPGDTVA 115 >gi|209521588|ref|ZP_03270286.1| flagellar hook capping protein [Burkholderia sp. H160] gi|209497971|gb|EDZ98128.1| flagellar hook capping protein [Burkholderia sp. H160] Length = 237 Score = 68.8 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 31/99 (31%), Positives = 56/99 (56%), Gaps = 3/99 (3%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 +N + + S S + + Q+ FL+LL+ Q+K+QDPT PM +S+ +QLA S ++ Sbjct: 22 MNGTSSSSSSTSSTSGTSASDLQNTFLQLLVAQMKNQDPTNPMDSSQMTSQLAQISTVQG 81 Query: 63 SVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSIS 98 +N++L L L + +QA+ IG + ++ SI+ Sbjct: 82 ISNLNTSLSSLSTQLTAGQQSQAALLIGSTVLSSGNSIT 120 >gi|170703095|ref|ZP_02893915.1| flagellar hook capping protein [Burkholderia ambifaria IOP40-10] gi|170131992|gb|EDT00500.1| flagellar hook capping protein [Burkholderia ambifaria IOP40-10] Length = 248 Score = 68.4 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 3/91 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 + S + + + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N++L Sbjct: 25 TRNVSTTGTSASDLQATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTSL 84 Query: 71 QEL---LKSNNLAQASSYIGKNITNADGSIS 98 L L + QA+ IG N+ ++ Sbjct: 85 TSLSSQLAAGQQTQAALLIGTNVLAPGNGVA 115 >gi|171321837|ref|ZP_02910738.1| flagellar hook capping protein [Burkholderia ambifaria MEX-5] gi|171092875|gb|EDT38127.1| flagellar hook capping protein [Burkholderia ambifaria MEX-5] Length = 248 Score = 68.4 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 3/91 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 + S + + + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N++L Sbjct: 25 TNKVSTTGTSASDLQATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTSL 84 Query: 71 QEL---LKSNNLAQASSYIGKNITNADGSIS 98 L L + QA+ IG N+ ++ Sbjct: 85 TSLSTQLAAGQQTQAALLIGTNVLAPGNGVA 115 >gi|330501136|ref|YP_004378005.1| flagellar basal body rod modification protein [Pseudomonas mendocina NK-01] gi|328915422|gb|AEB56253.1| flagellar basal body rod modification protein [Pseudomonas mendocina NK-01] Length = 225 Score = 68.4 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 44/83 (53%), Gaps = 3/83 (3%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM---EQSVQMNSTLQELLKSNNLAQA 82 + FL L++ QI++QDPT+P+ ++E + Q A SQ+ E ++ + LL + A Sbjct: 34 NNFLTLMVAQIQNQDPTKPVDSTEFLNQFAAMSQVKSLENMASLSKSNLVLLDNLQTLTA 93 Query: 83 SSYIGKNITNADGSISGVVNAIQ 105 + +G+ + A + + ++ Sbjct: 94 AGLVGQEVKVATEQLELGTDKVK 116 >gi|229592131|ref|YP_002874250.1| flagellar basal body rod modification protein [Pseudomonas fluorescens SBW25] gi|229363997|emb|CAY51547.1| flagellar biosynthesis, initiation of hook assembly [Pseudomonas fluorescens SBW25] Length = 241 Score = 68.4 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 37/64 (57%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 T+ + + ++LG+DAFL+LL+TQ+K+Q+P P VAQLA FS +E Sbjct: 24 TDNSSVGDAAKSATGNQSLGKDAFLQLLVTQLKNQNPLSPQDNGAFVAQLAQFSSLEGIN 83 Query: 65 QMNS 68 +N Sbjct: 84 TLND 87 >gi|238764391|ref|ZP_04625341.1| Flagellar hook capping protein [Yersinia kristensenii ATCC 33638] gi|238697417|gb|EEP90184.1| Flagellar hook capping protein [Yersinia kristensenii ATCC 33638] Length = 228 Score = 68.4 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 14/117 (11%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q++FL LL+ Q+K+QDPT PM+ +E QLA + + ++N+TL + + S+ Q Sbjct: 32 QNSFLTLLVAQLKNQDPTNPMQNNELTTQLAQINTVSGIEKLNTTLGSISGQIDSSQSLQ 91 Query: 82 ASSYIGKNITNAD-----GSISGVVNAIQV------SSTGLTAITVDNTEIPITTGI 127 ASS IG + GS GVV ++ +TA D+ + + T Sbjct: 92 ASSLIGHGVMIPGTNVLAGSKDGVVTTTPFGVELERAADKVTATISDSNGVAVRTIE 148 >gi|161526187|ref|YP_001581199.1| flagellar basal body rod modification protein [Burkholderia multivorans ATCC 17616] gi|189349097|ref|YP_001944725.1| flagellar basal body rod modification protein [Burkholderia multivorans ATCC 17616] gi|160343616|gb|ABX16702.1| flagellar hook capping protein [Burkholderia multivorans ATCC 17616] gi|189333119|dbj|BAG42189.1| flagellar basal-body rod modification protein [Burkholderia multivorans ATCC 17616] Length = 247 Score = 68.4 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 3/91 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 S + + + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N++L Sbjct: 25 TNNVSTTGTSASDLQATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTSL 84 Query: 71 QEL---LKSNNLAQASSYIGKNITNADGSIS 98 L L + QA+ IG N+ +++ Sbjct: 85 TSLSTQLAAGQQTQAALLIGSNVLAPGNTVA 115 >gi|220925889|ref|YP_002501191.1| flagellar hook capping protein [Methylobacterium nodulans ORS 2060] gi|219950496|gb|ACL60888.1| flagellar hook capping protein [Methylobacterium nodulans ORS 2060] Length = 228 Score = 68.4 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 31/102 (30%), Positives = 54/102 (52%), Gaps = 6/102 (5%) Query: 7 VNPTQQEFSKSKSKKTL--GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 N T S S T+ + FL LL TQ+++Q+P +P+ ++ QL F+ +EQ + Sbjct: 12 ANRTGGSASPSSDAATIAGNFNQFLTLLTTQLRNQNPLDPLDTNQFTQQLVQFASVEQQL 71 Query: 65 QMNSTLQELL---KSNNLAQASSYIGKNITNADGSISGVVNA 103 + N L LL K++ A A+ +G+ +T ADG+ + + Sbjct: 72 KTNDRLDSLLTASKASAAATAAGLVGQTVT-ADGTTAALAKG 112 >gi|170734375|ref|YP_001766322.1| flagellar basal body rod modification protein [Burkholderia cenocepacia MC0-3] gi|254246964|ref|ZP_04940285.1| Flagellar hook capping protein [Burkholderia cenocepacia PC184] gi|124871740|gb|EAY63456.1| Flagellar hook capping protein [Burkholderia cenocepacia PC184] gi|169817617|gb|ACA92200.1| flagellar hook capping protein [Burkholderia cenocepacia MC0-3] Length = 248 Score = 68.4 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 3/97 (3%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 T+ T S + + + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Sbjct: 20 TDTMNTNNVSSTNGTSASDLQATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIA 79 Query: 65 QMNSTLQEL---LKSNNLAQASSYIGKNITNADGSIS 98 Q+N++L L L + QA+ IG N+ S++ Sbjct: 80 QLNTSLTSLSTQLAAGQQTQAALLIGTNVLAPGNSVA 116 >gi|167574224|ref|ZP_02367098.1| flagellar basal body rod modification protein [Burkholderia oklahomensis C6786] Length = 282 Score = 68.0 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q FLKLL+TQ+++QDPT P+ +++ +QLA + + Q+N++L L L + Q Sbjct: 71 QTTFLKLLVTQLQNQDPTSPVDSAQMTSQLAQINTVSGIAQLNTSLTSLSSQLTAGQQTQ 130 Query: 82 ASSYIGKNITNADGSI 97 A+ IG N+ ++ Sbjct: 131 AAMLIGSNVLAPGNTV 146 >gi|167568106|ref|ZP_02361022.1| flagellar basal body rod modification protein [Burkholderia oklahomensis EO147] Length = 282 Score = 68.0 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q FLKLL+TQ+++QDPT P+ +++ +QLA + + Q+N++L L L + Q Sbjct: 71 QTTFLKLLVTQLQNQDPTSPVDSAQMTSQLAQINTVSGIAQLNTSLTSLSSQLTAGQQTQ 130 Query: 82 ASSYIGKNITNADGSI 97 A+ IG N+ ++ Sbjct: 131 AAMLIGSNVLAPGNTV 146 >gi|317009563|gb|ADU80143.1| flagellar basal body rod modification protein [Helicobacter pylori India7] Length = 306 Score = 68.0 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 41/76 (53%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E Sbjct: 7 EVTGAKAAQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66 Query: 62 QSVQMNSTLQELLKSN 77 + T+QE+ + Sbjct: 67 MQEENKKTMQEVASAM 82 >gi|126454100|ref|YP_001064563.1| flagellar basal body rod modification protein [Burkholderia pseudomallei 1106a] gi|134283615|ref|ZP_01770314.1| flagellar hook capping protein [Burkholderia pseudomallei 305] gi|167717659|ref|ZP_02400895.1| flagellar basal body rod modification protein [Burkholderia pseudomallei DM98] gi|242315536|ref|ZP_04814552.1| flagellar hook capping protein [Burkholderia pseudomallei 1106b] gi|126227742|gb|ABN91282.1| flagellar hook capping protein [Burkholderia pseudomallei 1106a] gi|134245024|gb|EBA45119.1| flagellar hook capping protein [Burkholderia pseudomallei 305] gi|242138775|gb|EES25177.1| flagellar hook capping protein [Burkholderia pseudomallei 1106b] Length = 280 Score = 68.0 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 3/88 (3%) Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72 S S + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N+ L Sbjct: 57 ASSLSTTSAADLQTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTALTS 116 Query: 73 L---LKSNNLAQASSYIGKNITNADGSI 97 L L + QA+ IG N+ ++ Sbjct: 117 LSSQLTAGQQTQAAMLIGSNVLAPGNTV 144 >gi|254182141|ref|ZP_04888738.1| flagellar hook capping protein [Burkholderia pseudomallei 1655] gi|184212679|gb|EDU09722.1| flagellar hook capping protein [Burkholderia pseudomallei 1655] Length = 280 Score = 68.0 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 3/88 (3%) Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72 S S + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N+ L Sbjct: 57 ASSLSTTSAADLQTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTALTS 116 Query: 73 L---LKSNNLAQASSYIGKNITNADGSI 97 L L + QA+ IG N+ ++ Sbjct: 117 LSSQLTAGQQTQAAMLIGSNVLAPGNTV 144 >gi|268680905|ref|YP_003305336.1| flagellar hook capping protein [Sulfurospirillum deleyianum DSM 6946] gi|268618936|gb|ACZ13301.1| flagellar hook capping protein [Sulfurospirillum deleyianum DSM 6946] Length = 229 Score = 68.0 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 3/76 (3%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQA 82 D FL+LL+T+++HQDPT+PM + + + Q A S +E S + L+EL L +N A Sbjct: 32 DDFLQLLLTELEHQDPTDPMDSDKILTQTAQLSSLEASQNTTAALEELSDQLSANTNFSA 91 Query: 83 SSYIGKNITNADGSIS 98 IG+ + +I+ Sbjct: 92 IGVIGQMASLGSSAIT 107 >gi|109947807|ref|YP_665035.1| flagellar basal body rod modification protein [Helicobacter acinonychis str. Sheeba] gi|109715028|emb|CAK00036.1| flagellar hook assembly protein [Helicobacter acinonychis str. Sheeba] Length = 292 Score = 68.0 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 41/76 (53%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+ +++ + L +DAF+KL + Q+K+QDPT PM+ + + Q A +Q+E Sbjct: 7 EVTGAKAAQERKKEQPTIANGLDKDAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66 Query: 62 QSVQMNSTLQELLKSN 77 + T+QE+ + Sbjct: 67 MQEENKKTMQEVASAM 82 >gi|148259133|ref|YP_001233260.1| flagellar hook capping protein [Acidiphilium cryptum JF-5] gi|326402286|ref|YP_004282367.1| putative flagellar hook capping protein [Acidiphilium multivorum AIU301] gi|146400814|gb|ABQ29341.1| flagellar hook capping protein [Acidiphilium cryptum JF-5] gi|325049147|dbj|BAJ79485.1| putative flagellar hook capping protein [Acidiphilium multivorum AIU301] Length = 253 Score = 68.0 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 3/74 (4%) Query: 24 GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN---LA 80 + FL +L TQ+++QDPT PM +S+ ++L FSQ+EQ + N +L +LL+ L Sbjct: 62 NYNDFLTMLTTQLQNQDPTSPMSSSQFTSELVQFSQVEQQISTNQSLTQLLQLTQAGDLT 121 Query: 81 QASSYIGKNITNAD 94 QASS +G +T Sbjct: 122 QASSMLGSKVTATS 135 >gi|208434812|ref|YP_002266478.1| hook assembly protein, flagella [Helicobacter pylori G27] gi|208432741|gb|ACI27612.1| hook assembly protein, flagella [Helicobacter pylori G27] Length = 316 Score = 67.6 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 41/76 (53%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E Sbjct: 7 EVTGAKAAQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66 Query: 62 QSVQMNSTLQELLKSN 77 + T+QE+ + Sbjct: 67 MQEENKKTMQEVASAM 82 >gi|317012716|gb|ADU83324.1| flagellar basal body rod modification protein [Helicobacter pylori Lithuania75] Length = 316 Score = 67.6 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 41/76 (53%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E Sbjct: 7 EVTGAKAAQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66 Query: 62 QSVQMNSTLQELLKSN 77 + T+QE+ + Sbjct: 67 MQEENKKTMQEVASAM 82 >gi|308186392|ref|YP_003930523.1| Basal-body rod modification protein flgD [Pantoea vagans C9-1] gi|308056902|gb|ADO09074.1| Basal-body rod modification protein flgD [Pantoea vagans C9-1] Length = 224 Score = 67.6 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 6/101 (5%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQD---AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59 +N +++PT S + QD FL +L+TQ+K+QDPT PM S+ QLA + Sbjct: 7 VNEKLDPTVLSSSSTSGTGNNAQDLQNQFLTMLVTQLKNQDPTNPMDNSQLTTQLAQINT 66 Query: 60 MEQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 + ++N+TL + + ++ Q+S+ IG + G I Sbjct: 67 LSGIEKLNTTLGSISGQISTSQSLQSSTLIGHGVMVNGGQI 107 >gi|238758111|ref|ZP_04619291.1| Flagellar hook capping protein [Yersinia aldovae ATCC 35236] gi|238703649|gb|EEP96186.1| Flagellar hook capping protein [Yersinia aldovae ATCC 35236] Length = 230 Score = 67.6 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 8/87 (9%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q++FL LL+ Q+K+QDPT PM+ +E QLA + + ++N+TL + + S+ Q Sbjct: 34 QNSFLTLLVAQLKNQDPTNPMQNNELTTQLAQINTVSGIEKLNTTLGSISGQIDSSQSLQ 93 Query: 82 ASSYIGKNITNAD-----GSISGVVNA 103 ASS IG + GS G V Sbjct: 94 ASSLIGHGVMIPGTAIFTGSKDGTVTT 120 >gi|78067838|ref|YP_370607.1| flagellar basal body rod modification protein [Burkholderia sp. 383] gi|77968583|gb|ABB09963.1| Flagellar hook capping protein [Burkholderia sp. 383] Length = 251 Score = 67.6 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 3/91 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 + S + + + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N++L Sbjct: 25 TNKVSTNGTSASDLQATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTSL 84 Query: 71 QEL---LKSNNLAQASSYIGKNITNADGSIS 98 L L + QA+ IG N+ +++ Sbjct: 85 TSLSTQLTAGQQTQAALLIGTNVLAPGNAVA 115 >gi|238788314|ref|ZP_04632108.1| Flagellar hook capping protein [Yersinia frederiksenii ATCC 33641] gi|238723560|gb|EEQ15206.1| Flagellar hook capping protein [Yersinia frederiksenii ATCC 33641] Length = 230 Score = 67.6 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q++FL LL+ Q+K+QDPT PM+ +E QLA + + ++N+TL + + S+ Q Sbjct: 34 QNSFLTLLVAQLKNQDPTNPMQNNELTTQLAQINTVSGIEKLNTTLGAISGQIDSSQSLQ 93 Query: 82 ASSYIGKNITNADGSI 97 ASS IG + SI Sbjct: 94 ASSLIGHGVMIPGTSI 109 >gi|32265683|ref|NP_859715.1| flagellar basal body rod modification protein [Helicobacter hepaticus ATCC 51449] gi|32261731|gb|AAP76781.1| flagellar hook assembly protein FlgD [Helicobacter hepaticus ATCC 51449] Length = 273 Score = 67.6 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 24/80 (30%), Positives = 42/80 (52%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+ +E K ++ L DAF++L + Q+K+QDPT PM+ + + Q A +Q+E Sbjct: 7 EVTGSAAKIAKEKEKVRNINELDNDAFMRLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66 Query: 62 QSVQMNSTLQELLKSNNLAQ 81 Q T+ E+ ++ Q Sbjct: 67 MQEQNKKTMVEVAEAMKSTQ 86 >gi|254779510|ref|YP_003057616.1| flagellar basal body rod modification protein [Helicobacter pylori B38] gi|254001422|emb|CAX29417.1| Flagellar hook assembly protein FlgD [Helicobacter pylori B38] Length = 306 Score = 67.6 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 41/76 (53%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E Sbjct: 7 EVTGAKAAQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66 Query: 62 QSVQMNSTLQELLKSN 77 + T+QE+ + Sbjct: 67 MQEENKKTMQEVASAM 82 >gi|15645523|ref|NP_207699.1| flagellar basal body rod modification protein [Helicobacter pylori 26695] gi|2314043|gb|AAD07953.1| hook assembly protein, flagella (flgD) [Helicobacter pylori 26695] Length = 301 Score = 67.6 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 41/76 (53%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E Sbjct: 7 EVTGAKAAQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66 Query: 62 QSVQMNSTLQELLKSN 77 + T+QE+ + Sbjct: 67 MQEENKKTMQEVASAM 82 >gi|170743225|ref|YP_001771880.1| flagellar hook capping protein [Methylobacterium sp. 4-46] gi|168197499|gb|ACA19446.1| flagellar hook capping protein [Methylobacterium sp. 4-46] Length = 233 Score = 67.3 bits (163), Expect = 6e-10, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 48/97 (49%), Gaps = 3/97 (3%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 T T+ + + + FL LL TQ+K+Q+P +P+ ++ QL F+ +EQ + Sbjct: 10 TGSAGTKTNTASDSATIAGNFNQFLTLLTTQLKNQNPLDPLDTNQFTQQLVQFASVEQQL 69 Query: 65 QMNSTLQELL---KSNNLAQASSYIGKNITNADGSIS 98 + N L ++ K+ + A+ +GK +T + + Sbjct: 70 KTNDRLDTMVAASKAATASSAAGLVGKTVTADGATAA 106 >gi|311087753|gb|ADP67832.1| basal-body rod modification protein FlgD [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 236 Score = 67.3 bits (163), Expect = 6e-10, Method: Composition-based stats. Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 3/98 (3%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 IN E + Q FL LLI QIK+QDPT+P+K S+ +QLA + Sbjct: 21 INNEAVKKNDNNLPNDINPPDLQKNFLSLLIAQIKNQDPTDPIKNSDLTSQLAQINTASG 80 Query: 63 SVQMNSTLQELLKS---NNLAQASSYIGKNITNADGSI 97 ++N+T+ + N Q S+ IG+++ + I Sbjct: 81 MQKLNNTVDQFSNQISKNQNIQLSTLIGRHVMVPNKKI 118 >gi|15616945|ref|NP_240158.1| basal-body rod modification protein FlgD [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681698|ref|YP_002468084.1| basal-body rod modification protein FlgD [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471394|ref|ZP_05635393.1| basal-body rod modification protein FlgD [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|11386806|sp|P57421|FLGD_BUCAI RecName: Full=Basal-body rod modification protein flgD gi|25355178|pir||D84969 basal-body rod modification protein flgD [imported] - Buchnera sp. (strain APS) gi|10039010|dbj|BAB13044.1| basal-body rod modification protein flgD [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219624541|gb|ACL30696.1| basal-body rod modification protein FlgD [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 236 Score = 67.3 bits (163), Expect = 6e-10, Method: Composition-based stats. Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 3/98 (3%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 IN E + Q FL LLI QIK+QDPT+P+K S+ +QLA + Sbjct: 21 INNEAVKKNDNNLPNDINPPDLQKNFLSLLIAQIKNQDPTDPIKNSDLTSQLAQINTASG 80 Query: 63 SVQMNSTLQELLKS---NNLAQASSYIGKNITNADGSI 97 ++N+T+ + N Q S+ IG+++ + I Sbjct: 81 MQKLNNTVDQFSNQISKNQNIQLSTLIGRHVMVPNKKI 118 >gi|207092211|ref|ZP_03239998.1| flagellar basal body rod modification protein [Helicobacter pylori HPKX_438_AG0C1] Length = 311 Score = 67.3 bits (163), Expect = 6e-10, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 41/76 (53%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E Sbjct: 7 EVTGSKAAQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66 Query: 62 QSVQMNSTLQELLKSN 77 + T+QE+ + Sbjct: 67 MQEENKKTMQEVASAM 82 >gi|23011250|ref|ZP_00051667.1| COG1843: Flagellar hook capping protein [Magnetospirillum magnetotacticum MS-1] Length = 223 Score = 67.3 bits (163), Expect = 6e-10, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 4/74 (5%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN---NLAQASS 84 FL LL TQ+K+Q+P +P+ ++ QL F+ +EQ ++ N++L +L ++ + AS Sbjct: 32 FLTLLTTQLKNQNPLDPLDTNQFTQQLVQFAGVEQQLKTNASLDTILTNSKASAASSASG 91 Query: 85 YIGKNITNADGSIS 98 IG+ + ADG+ + Sbjct: 92 LIGRTVV-ADGATT 104 >gi|237810460|ref|YP_002894911.1| flagellar basal body rod modification protein [Burkholderia pseudomallei MSHR346] gi|237503425|gb|ACQ95743.1| flagellar basal body rod modification protein [Burkholderia pseudomallei MSHR346] Length = 280 Score = 67.3 bits (163), Expect = 7e-10, Method: Composition-based stats. Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 3/88 (3%) Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72 S S + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N+ L Sbjct: 57 ASSLSTTSAADLQTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTALTS 116 Query: 73 L---LKSNNLAQASSYIGKNITNADGSI 97 L L + QA+ IG N+ ++ Sbjct: 117 LSSQLTAGQQTQAAMLIGSNVLAPGNTL 144 >gi|217032454|ref|ZP_03437947.1| hypothetical protein HPB128_175g15 [Helicobacter pylori B128] gi|298736141|ref|YP_003728666.1| Flagellar hook capping protein FlgD [Helicobacter pylori B8] gi|216945862|gb|EEC24482.1| hypothetical protein HPB128_175g15 [Helicobacter pylori B128] gi|298355330|emb|CBI66202.1| Flagellar hook capping protein FlgD [Helicobacter pylori B8] Length = 341 Score = 67.3 bits (163), Expect = 7e-10, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 41/76 (53%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E Sbjct: 7 EVTGAKAAQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66 Query: 62 QSVQMNSTLQELLKSN 77 + T+QE+ + Sbjct: 67 MQEENKKTMQEVASAM 82 >gi|308062225|gb|ADO04113.1| flagellar basal body rod modification protein [Helicobacter pylori Cuz20] Length = 319 Score = 67.3 bits (163), Expect = 7e-10, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 41/76 (53%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+ +++ + L ++AFLKL + Q+K+QDPT PM+ + + Q A +Q+E Sbjct: 7 EVTGAKAAQERKKEQPTIANGLDKNAFLKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66 Query: 62 QSVQMNSTLQELLKSN 77 + T+QE+ + Sbjct: 67 MQEENKKTMQEVASAM 82 >gi|219682253|ref|YP_002468637.1| basal-body rod modification protein FlgD [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219621986|gb|ACL30142.1| basal-body rod modification protein FlgD [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|311086077|gb|ADP66159.1| basal-body rod modification protein FlgD [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086648|gb|ADP66729.1| basal-body rod modification protein FlgD [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087234|gb|ADP67314.1| basal-body rod modification protein FlgD [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 236 Score = 67.3 bits (163), Expect = 7e-10, Method: Composition-based stats. Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 3/98 (3%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 IN E + Q FL LLI QIK+QDPT+P+K S+ +QLA + Sbjct: 21 INNEAVKKNDNNLPNDINPPDLQKNFLSLLIAQIKNQDPTDPIKNSDLTSQLAQINTASG 80 Query: 63 SVQMNSTLQELLKS---NNLAQASSYIGKNITNADGSI 97 ++N+T+ + N Q S+ IG+++ + I Sbjct: 81 MQKLNNTVDQFSNQISKNQNIQLSTLIGRHVMVPNKKI 118 >gi|67641537|ref|ZP_00440314.1| basal-body rod modification protein FlgD [Burkholderia mallei GB8 horse 4] gi|121598638|ref|YP_994290.1| flagellar basal body rod modification protein [Burkholderia mallei SAVP1] gi|124386481|ref|YP_001028061.1| flagellar basal body rod modification protein [Burkholderia mallei NCTC 10229] gi|126451230|ref|YP_001082868.1| flagellar basal body rod modification protein [Burkholderia mallei NCTC 10247] gi|161579514|ref|YP_104797.2| flagellar basal body rod modification protein [Burkholderia mallei ATCC 23344] gi|167001536|ref|ZP_02267331.1| basal-body rod modification protein FlgD [Burkholderia mallei PRL-20] gi|254175221|ref|ZP_04881882.1| basal-body rod modification protein FlgD [Burkholderia mallei ATCC 10399] gi|254201895|ref|ZP_04908259.1| basal-body rod modification protein FlgD [Burkholderia mallei FMH] gi|254207229|ref|ZP_04913580.1| basal-body rod modification protein FlgD [Burkholderia mallei JHU] gi|254359731|ref|ZP_04976002.1| basal-body rod modification protein FlgD [Burkholderia mallei 2002721280] gi|121227448|gb|ABM49966.1| basal-body rod modification protein FlgD [Burkholderia mallei SAVP1] gi|124294501|gb|ABN03770.1| basal-body rod modification protein FlgD [Burkholderia mallei NCTC 10229] gi|126244100|gb|ABO07193.1| basal-body rod modification protein FlgD [Burkholderia mallei NCTC 10247] gi|147747789|gb|EDK54865.1| basal-body rod modification protein FlgD [Burkholderia mallei FMH] gi|147752771|gb|EDK59837.1| basal-body rod modification protein FlgD [Burkholderia mallei JHU] gi|148028945|gb|EDK86877.1| basal-body rod modification protein FlgD [Burkholderia mallei 2002721280] gi|160696266|gb|EDP86236.1| basal-body rod modification protein FlgD [Burkholderia mallei ATCC 10399] gi|238522488|gb|EEP85932.1| basal-body rod modification protein FlgD [Burkholderia mallei GB8 horse 4] gi|243062737|gb|EES44923.1| basal-body rod modification protein FlgD [Burkholderia mallei PRL-20] Length = 277 Score = 67.3 bits (163), Expect = 7e-10, Method: Composition-based stats. Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 3/88 (3%) Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72 S S + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N+ L Sbjct: 57 ASSLSTTSAADLQTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTALTS 116 Query: 73 L---LKSNNLAQASSYIGKNITNADGSI 97 L L + QA+ IG N+ ++ Sbjct: 117 LSSQLTAGQQTQAAMLIGSNVLAPGNTV 144 >gi|317014316|gb|ADU81752.1| flagellar basal body rod modification protein [Helicobacter pylori Gambia94/24] Length = 301 Score = 67.3 bits (163), Expect = 7e-10, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 41/76 (53%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E Sbjct: 7 EVTGAKAAQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66 Query: 62 QSVQMNSTLQELLKSN 77 + T+QE+ + Sbjct: 67 MQEENKKTMQEVASAM 82 >gi|317177696|dbj|BAJ55485.1| flagellar basal body rod modification protein [Helicobacter pylori F16] Length = 311 Score = 67.3 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 41/76 (53%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E Sbjct: 7 EVTGAKAAQERKKEQPAIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66 Query: 62 QSVQMNSTLQELLKSN 77 + T+QE+ + Sbjct: 67 MQEENKKTMQEVASAM 82 >gi|315586852|gb|ADU41233.1| hook assembly protein [Helicobacter pylori 35A] Length = 316 Score = 67.3 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 41/76 (53%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E Sbjct: 7 EVTGAKAAQERKKEQPAIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66 Query: 62 QSVQMNSTLQELLKSN 77 + T+QE+ + Sbjct: 67 MQEENKKTMQEVASAM 82 >gi|52427987|gb|AAU48580.1| basal-body rod modification protein FlgD [Burkholderia mallei ATCC 23344] Length = 255 Score = 67.3 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 3/88 (3%) Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72 S S + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N+ L Sbjct: 35 ASSLSTTSAADLQTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTALTS 94 Query: 73 L---LKSNNLAQASSYIGKNITNADGSI 97 L L + QA+ IG N+ ++ Sbjct: 95 LSSQLTAGQQTQAAMLIGSNVLAPGNTV 122 >gi|332673745|gb|AEE70562.1| hook assembly protein [Helicobacter pylori 83] Length = 319 Score = 66.9 bits (162), Expect = 8e-10, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 41/76 (53%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E Sbjct: 7 EVTGAKAAQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66 Query: 62 QSVQMNSTLQELLKSN 77 + T+QE+ + Sbjct: 67 MQEENKKTMQEVASAM 82 >gi|317011117|gb|ADU84864.1| flagellar basal body rod modification protein [Helicobacter pylori SouthAfrica7] Length = 382 Score = 66.9 bits (162), Expect = 8e-10, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 42/76 (55%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+ +++ + + L +DAF+KL + Q+K+QDPT PM+ + + Q A +Q+E Sbjct: 7 EVTGAKAAQERKKEQPQIANGLDKDAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66 Query: 62 QSVQMNSTLQELLKSN 77 + T+QE+ + Sbjct: 67 MQEENKKTMQEVASAM 82 >gi|315125983|ref|YP_004067986.1| LfgD [Pseudoalteromonas sp. SM9913] gi|315014497|gb|ADT67835.1| LfgD [Pseudoalteromonas sp. SM9913] Length = 217 Score = 66.9 bits (162), Expect = 9e-10, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 63/137 (45%), Gaps = 16/137 (11%) Query: 1 MEINTEVNPTQQEFSKSK-----SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55 M++N+ V + S FL+LL+ QI +Q+P +PM ++ V+QLA Sbjct: 1 MQVNSAVPSAADATKNTTNIAGNSSADEMSTMFLELLVAQISNQNPLQPMDGTQYVSQLA 60 Query: 56 VFSQMEQSVQMNSTLQ---ELLKSNNLAQASSYIGKNI--------TNADGSISGVVNAI 104 FS +E + + + S + +A++ +G+ + DGS+SG+VN Sbjct: 61 EFSNVESLQSIRQNTADGLDYVSSLAVLEATNMVGQTVDVQASSIALEQDGSVSGMVNLG 120 Query: 105 QVSSTGLTAITVDNTEI 121 + + + + + E+ Sbjct: 121 EAADSVTVQLYNQDGEL 137 >gi|210135098|ref|YP_002301537.1| flagellar basal body rod modification protein [Helicobacter pylori P12] gi|210133066|gb|ACJ08057.1| flagellar hook assembly protein [Helicobacter pylori P12] Length = 339 Score = 66.9 bits (162), Expect = 9e-10, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 41/76 (53%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E Sbjct: 7 EVTGAKAAQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66 Query: 62 QSVQMNSTLQELLKSN 77 + T+QE+ + Sbjct: 67 MQEENKKTMQEVASAM 82 >gi|308063737|gb|ADO05624.1| flagellar basal body rod modification protein [Helicobacter pylori Sat464] Length = 309 Score = 66.9 bits (162), Expect = 9e-10, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 41/76 (53%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+ +++ + L ++AFLKL + Q+K+QDPT PM+ + + Q A +Q+E Sbjct: 7 EVTGAKAAQERKKEQPAIANGLDKNAFLKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66 Query: 62 QSVQMNSTLQELLKSN 77 + T+QE+ + Sbjct: 67 MQEENKKTMQEVASAM 82 >gi|126440236|ref|YP_001057321.1| flagellar basal body rod modification protein [Burkholderia pseudomallei 668] gi|162210025|ref|YP_331877.2| flagellar basal body rod modification protein [Burkholderia pseudomallei 1710b] gi|167736702|ref|ZP_02409476.1| flagellar basal body rod modification protein [Burkholderia pseudomallei 14] gi|167822317|ref|ZP_02453788.1| flagellar basal body rod modification protein [Burkholderia pseudomallei 9] gi|167843907|ref|ZP_02469415.1| flagellar basal body rod modification protein [Burkholderia pseudomallei B7210] gi|167892409|ref|ZP_02479811.1| flagellar basal body rod modification protein [Burkholderia pseudomallei 7894] gi|167900907|ref|ZP_02488112.1| flagellar basal body rod modification protein [Burkholderia pseudomallei NCTC 13177] gi|167909126|ref|ZP_02496217.1| flagellar basal body rod modification protein [Burkholderia pseudomallei 112] gi|167917163|ref|ZP_02504254.1| flagellar basal body rod modification protein [Burkholderia pseudomallei BCC215] gi|217425024|ref|ZP_03456520.1| flagellar hook capping protein [Burkholderia pseudomallei 576] gi|226199857|ref|ZP_03795408.1| flagellar hook capping protein [Burkholderia pseudomallei Pakistan 9] gi|254188071|ref|ZP_04894583.1| flagellar hook capping protein [Burkholderia pseudomallei Pasteur 52237] gi|254196785|ref|ZP_04903209.1| flagellar hook capping protein [Burkholderia pseudomallei S13] gi|254259219|ref|ZP_04950273.1| flagellar hook capping protein [Burkholderia pseudomallei 1710a] gi|254295813|ref|ZP_04963270.1| flagellar hook capping protein [Burkholderia pseudomallei 406e] gi|126219729|gb|ABN83235.1| flagellar hook capping protein [Burkholderia pseudomallei 668] gi|157805801|gb|EDO82971.1| flagellar hook capping protein [Burkholderia pseudomallei 406e] gi|157935751|gb|EDO91421.1| flagellar hook capping protein [Burkholderia pseudomallei Pasteur 52237] gi|169653528|gb|EDS86221.1| flagellar hook capping protein [Burkholderia pseudomallei S13] gi|217392044|gb|EEC32070.1| flagellar hook capping protein [Burkholderia pseudomallei 576] gi|225928208|gb|EEH24244.1| flagellar hook capping protein [Burkholderia pseudomallei Pakistan 9] gi|254217908|gb|EET07292.1| flagellar hook capping protein [Burkholderia pseudomallei 1710a] Length = 280 Score = 66.9 bits (162), Expect = 9e-10, Method: Composition-based stats. Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 3/88 (3%) Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72 S S + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N+ L Sbjct: 57 ASSLSTTSAADLQTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTALTS 116 Query: 73 L---LKSNNLAQASSYIGKNITNADGSI 97 L L + QA+ IG N+ ++ Sbjct: 117 LSSQLTAGQQTQAAMLIGSNVLAPGNTV 144 >gi|308183060|ref|YP_003927187.1| flagellar basal body rod modification protein [Helicobacter pylori PeCan4] gi|308065245|gb|ADO07137.1| flagellar basal body rod modification protein [Helicobacter pylori PeCan4] Length = 306 Score = 66.9 bits (162), Expect = 9e-10, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 41/76 (53%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E Sbjct: 7 EVTGAKAAQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66 Query: 62 QSVQMNSTLQELLKSN 77 + T+QE+ + Sbjct: 67 MQEENKKTMQEVASAM 82 >gi|332296629|ref|YP_004438552.1| flagellar hook capping protein [Thermodesulfobium narugense DSM 14796] gi|332179732|gb|AEE15421.1| flagellar hook capping protein [Thermodesulfobium narugense DSM 14796] Length = 139 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 31/108 (28%), Positives = 61/108 (56%), Gaps = 3/108 (2%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSY 85 +AFL LLI Q+K+QDP + M +E + +L+ + +Q M++++Q + + N A++ Sbjct: 32 NAFLTLLIAQLKNQDPLDAMSTNEFMNELSALTTTQQMTNMSNSVQNSMTNINNLYATNL 91 Query: 86 IGKNI--TNADGSI-SGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 IGK I T AD S S V + + + + + + + I +++ + +S Sbjct: 92 IGKKIQYTAADNSTQSATVTQVTIKNGNPSLVLDNGSTINLSSVVSVS 139 >gi|32490789|ref|NP_871043.1| hypothetical protein WGLp040 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25165995|dbj|BAC24186.1| flgD [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 279 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 49/89 (55%), Gaps = 4/89 (4%) Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 +E + S + ++L D FLK+++ QIK+QDPT P+ + Q+ ++N ++Q Sbjct: 71 KEINNSNNLQSLT-DNFLKMILVQIKNQDPTHPIDNNHLTTQMTQMHTALGIEKLNKSIQ 129 Query: 72 ELLKSNNLAQA---SSYIGKNITNADGSI 97 E+ ++ N +Q S++IGK + I Sbjct: 130 EIKQTMNNSQYINLSNWIGKTVMIEGNPI 158 >gi|188527732|ref|YP_001910419.1| flagellar basal body rod modification protein [Helicobacter pylori Shi470] gi|188143972|gb|ACD48389.1| flagellar basal body rod modification protein [Helicobacter pylori Shi470] Length = 324 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 41/76 (53%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+ +++ + L ++AFLKL + Q+K+QDPT PM+ + + Q A +Q+E Sbjct: 7 EVTGAKAAQERKKEQPAIANGLDKNAFLKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66 Query: 62 QSVQMNSTLQELLKSN 77 + T+QE+ + Sbjct: 67 MQEENKKTMQEVASAM 82 >gi|108563314|ref|YP_627630.1| flagellar basal body rod modification protein [Helicobacter pylori HPAG1] gi|107837087|gb|ABF84956.1| hook assembly protein, flagella [Helicobacter pylori HPAG1] Length = 327 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 41/76 (53%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E Sbjct: 7 EVTGAKAAQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66 Query: 62 QSVQMNSTLQELLKSN 77 + T+QE+ + Sbjct: 67 MQEENKKTMQEVASAM 82 >gi|308184692|ref|YP_003928825.1| flagellar basal body rod modification protein [Helicobacter pylori SJM180] gi|308060612|gb|ADO02508.1| flagellar basal body rod modification protein [Helicobacter pylori SJM180] Length = 346 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 41/76 (53%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E Sbjct: 7 EVTGAKAAQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66 Query: 62 QSVQMNSTLQELLKSN 77 + T+QE+ + Sbjct: 67 MQEENKKTMQEVASAM 82 >gi|167813801|ref|ZP_02445481.1| flagellar basal body rod modification protein [Burkholderia pseudomallei 91] Length = 283 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 3/88 (3%) Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72 S S + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N+ L Sbjct: 60 ASSLSTTSAADLQTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTALTS 119 Query: 73 L---LKSNNLAQASSYIGKNITNADGSI 97 L L + QA+ IG N+ ++ Sbjct: 120 LSSQLTAGQQTQAAMLIGSNVLAPGNTV 147 >gi|161723213|ref|YP_106899.2| flagellar basal body rod modification protein [Burkholderia pseudomallei K96243] Length = 283 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 3/88 (3%) Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72 S S + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N+ L Sbjct: 60 ASSLSTTSAADLQTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTALTS 119 Query: 73 L---LKSNNLAQASSYIGKNITNADGSI 97 L L + QA+ IG N+ ++ Sbjct: 120 LSSQLTAGQQTQAAMLIGSNVLAPGNTV 147 >gi|307637596|gb|ADN80046.1| Flagellar basal-body rod modification protein [Helicobacter pylori 908] gi|325996189|gb|ADZ51594.1| Flagellar basal-body rod modification protein [Helicobacter pylori 2018] gi|325997785|gb|ADZ49993.1| Flagellar basal-body rod modification protein [Helicobacter pylori 2017] Length = 325 Score = 66.5 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 41/76 (53%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E Sbjct: 7 EVTGAKAAQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66 Query: 62 QSVQMNSTLQELLKSN 77 + T+QE+ + Sbjct: 67 MQEENKKTMQEVASAM 82 >gi|167585193|ref|ZP_02377581.1| flagellar basal body rod modification protein [Burkholderia ubonensis Bu] Length = 250 Score = 66.5 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 3/96 (3%) Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65 N + S + + Q FLKLL+TQ+K+QDPT P+ +S+ +QLA + + Q Sbjct: 24 NTNKVSTTGTLSTTSASDLQSTFLKLLVTQLKNQDPTSPVDSSQMTSQLAQINTVSGIAQ 83 Query: 66 MNSTLQEL---LKSNNLAQASSYIGKNITNADGSIS 98 +NS+L L L + QA+ IG N+ ++ Sbjct: 84 LNSSLTSLSTQLTAGQQTQAAMLIGTNVLAPGNGVA 119 >gi|297380104|gb|ADI34991.1| hook assembly protein, flagella [Helicobacter pylori v225d] Length = 316 Score = 66.5 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 41/76 (53%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E Sbjct: 7 EVTGAKAAQERKKEQPAIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66 Query: 62 QSVQMNSTLQELLKSN 77 + T+QE+ + Sbjct: 67 MQEENKKTMQEVASAM 82 >gi|317180243|dbj|BAJ58029.1| flagellar basal body rod modification protein [Helicobacter pylori F32] Length = 329 Score = 66.5 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 41/76 (53%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E Sbjct: 7 EVTGAKAAQERKKEQPAIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66 Query: 62 QSVQMNSTLQELLKSN 77 + T+QE+ + Sbjct: 67 MQEENKKTMQEVASAM 82 >gi|52208327|emb|CAH34260.1| putative basal-body rod modification protein [Burkholderia pseudomallei K96243] Length = 261 Score = 66.5 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 3/88 (3%) Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72 S S + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N+ L Sbjct: 38 ASSLSTTSAADLQTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTALTS 97 Query: 73 L---LKSNNLAQASSYIGKNITNADGSI 97 L L + QA+ IG N+ ++ Sbjct: 98 LSSQLTAGQQTQAAMLIGSNVLAPGNTV 125 >gi|170751442|ref|YP_001757702.1| flagellar hook capping protein [Methylobacterium radiotolerans JCM 2831] gi|170657964|gb|ACB27019.1| flagellar hook capping protein [Methylobacterium radiotolerans JCM 2831] Length = 228 Score = 66.5 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 34/113 (30%), Positives = 58/113 (51%), Gaps = 10/113 (8%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNLAQASS 84 FL LL TQ+K+Q+P +PM ++ QL F+ +EQ ++ N L +L +S + A A+S Sbjct: 35 FLTLLTTQLKNQNPLDPMDTNQFTQQLVQFAGVEQQLKTNDRLDSILSASQSASSASATS 94 Query: 85 YIGKNITN-------ADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 YIGK ++ + GS S +N + +S + + + T +S Sbjct: 95 YIGKTVSADGSASQLSGGSASWTLNPARAASKAVITVLDSKNNVVATQTTALS 147 >gi|317182207|dbj|BAJ59991.1| flagellar basal body rod modification protein [Helicobacter pylori F57] Length = 321 Score = 66.5 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 41/76 (53%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E Sbjct: 7 EVTGAKAAQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66 Query: 62 QSVQMNSTLQELLKSN 77 + T+QE+ + Sbjct: 67 MQEENKKTMQEVASAM 82 >gi|15611910|ref|NP_223561.1| flagellar basal body rod modification protein [Helicobacter pylori J99] gi|4155413|gb|AAD06421.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99] Length = 363 Score = 66.5 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 41/76 (53%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E Sbjct: 7 EVTGAKAAQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66 Query: 62 QSVQMNSTLQELLKSN 77 + T+QE+ + Sbjct: 67 MQEENKKTMQEVASAM 82 >gi|224436454|ref|ZP_03657468.1| flagellar basal body rod modification protein [Helicobacter cinaedi CCUG 18818] gi|313142966|ref|ZP_07805159.1| flagellar basal body rod modification protein [Helicobacter cinaedi CCUG 18818] gi|313127997|gb|EFR45614.1| flagellar basal body rod modification protein [Helicobacter cinaedi CCUG 18818] Length = 273 Score = 66.1 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 24/80 (30%), Positives = 42/80 (52%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+ +E K ++ L DAF++L + Q+K+QDPT PM+ + + Q A +Q+E Sbjct: 7 EVTGSAAKIAKEKEKVRNINELDNDAFMRLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66 Query: 62 QSVQMNSTLQELLKSNNLAQ 81 Q T+ E+ ++ Q Sbjct: 67 MQEQNKKTMVEVAEAMKSTQ 86 >gi|134297199|ref|YP_001120934.1| flagellar basal body rod modification protein [Burkholderia vietnamiensis G4] gi|134140356|gb|ABO56099.1| flagellar hook capping protein [Burkholderia vietnamiensis G4] Length = 248 Score = 66.1 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 3/91 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN--- 67 + S + + + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N Sbjct: 25 TNKVSTTGTSASDLQATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNSSL 84 Query: 68 STLQELLKSNNLAQASSYIGKNITNADGSIS 98 S+L L + QA+ IG N+ +S Sbjct: 85 SSLSTQLAAGQQTQAALLIGTNVLAPGNDVS 115 >gi|261839697|gb|ACX99462.1| flagellar basal body rod modification protein [Helicobacter pylori 52] Length = 354 Score = 66.1 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 41/76 (53%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E Sbjct: 7 EVTGAKAAQERKKEQPAIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66 Query: 62 QSVQMNSTLQELLKSN 77 + T+QE+ + Sbjct: 67 MQEENKKTMQEVASAM 82 >gi|217034409|ref|ZP_03439823.1| hypothetical protein HP9810_884g14 [Helicobacter pylori 98-10] gi|216943140|gb|EEC22612.1| hypothetical protein HP9810_884g14 [Helicobacter pylori 98-10] Length = 324 Score = 66.1 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 41/76 (53%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E Sbjct: 7 EVTGAKAAQERKKEQPAIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66 Query: 62 QSVQMNSTLQELLKSN 77 + T+QE+ + Sbjct: 67 MQEENKKTMQEVANAM 82 >gi|313905133|ref|ZP_07838502.1| flagellar hook capping protein [Eubacterium cellulosolvens 6] gi|313470036|gb|EFR65369.1| flagellar hook capping protein [Eubacterium cellulosolvens 6] Length = 176 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 50/107 (46%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 + S + K TL ++ KLL Q+ +QD + PM S+ + Q++ + ++ + + Sbjct: 21 TKATSVTTDKNTLSITSYFKLLAAQLANQDMSNPMSTSDMMNQMSQMAMVQSLTALTEST 80 Query: 71 QELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVD 117 + + + A+ IGK +T S + +Q S T ++V+ Sbjct: 81 KSATSMSQQSYAAGMIGKEVTYNGKSYTSNGTLVQAGSRTGTIVSVN 127 >gi|327478808|gb|AEA82118.1| flagellar basal body rod modification protein [Pseudomonas stutzeri DSM 4166] Length = 221 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 25/86 (29%), Positives = 48/86 (55%), Gaps = 3/86 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 Q + + + S T ++ F+ L++ QIK+QDPT+P+ ++E + Q +V SQ++ M S Sbjct: 19 QVKRAVNVSDATTMENNFISLMVAQIKYQDPTKPVDSTEFLNQFSVMSQVKSMENMTSLA 78 Query: 71 QE---LLKSNNLAQASSYIGKNITNA 93 Q L+ + A+ +G+ + A Sbjct: 79 QNNLVLMDNLQTLTAAGLVGQQVRVA 104 >gi|317178741|dbj|BAJ56529.1| flagellar basal body rod modification protein [Helicobacter pylori F30] Length = 329 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 41/76 (53%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E Sbjct: 7 EVTGAKAVQERKKEQPAIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66 Query: 62 QSVQMNSTLQELLKSN 77 + T+QE+ + Sbjct: 67 MQEENKKTMQEVASAM 82 >gi|261838283|gb|ACX98049.1| hook assembly protein [Helicobacter pylori 51] Length = 334 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 41/76 (53%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E Sbjct: 7 EVTGAKAAQERKKEQPAIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66 Query: 62 QSVQMNSTLQELLKSN 77 + T+QE+ + Sbjct: 67 MQEENKKTMQEVASAM 82 >gi|21672603|ref|NP_660670.1| basal-body rod modification protein FlgD [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25008457|sp|Q8K9K7|FLGD_BUCAP RecName: Full=Basal-body rod modification protein flgD gi|21623234|gb|AAM67881.1| basal-body rod modification protein FlgD [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 226 Score = 65.7 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST---LQELLKSNNLAQ 81 Q FL LL+ Q+K+QDPT+P+K SE +QLA + ++NST + + Q Sbjct: 32 QKNFLSLLMAQMKNQDPTDPIKNSELTSQLAQINTATGIERLNSTVGIFSNKINQSQNIQ 91 Query: 82 ASSYIGKNITNADGSI 97 SS IG ++ I Sbjct: 92 VSSLIGHHVMIPSSQI 107 >gi|296274023|ref|YP_003656654.1| flagellar hook capping protein [Arcobacter nitrofigilis DSM 7299] gi|296098197|gb|ADG94147.1| flagellar hook capping protein [Arcobacter nitrofigilis DSM 7299] Length = 156 Score = 65.7 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 63/110 (57%), Gaps = 3/110 (2%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+++ + Q+++++ S L + FLKL++ Q+K QDPT+P + + Q S ++ Sbjct: 5 EVSSVTDANGQQYTQAISNDKLTNEDFLKLMLEQMKQQDPTKPQDSQNMLNQQMQMSSIQ 64 Query: 62 QSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSS 108 ++ M+++++ L + ++L+ A++ I K + + +G++ + VS Sbjct: 65 TNLDMSNSMKALQATFQQSSLSNATNLINKIVDTGEVDDNGILKSYAVSG 114 >gi|254286493|ref|ZP_04961450.1| flagellar hook capping protein [Vibrio cholerae AM-19226] gi|150423442|gb|EDN15386.1| flagellar hook capping protein [Vibrio cholerae AM-19226] Length = 101 Score = 65.7 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 3/78 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 Q++ ++ +K+L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+ Sbjct: 24 QKKPDETTGQKSLKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNTQF 83 Query: 71 QEL---LKSNNLAQASSY 85 + L + SN QASS Sbjct: 84 ESLNSSMTSNQALQASSL 101 >gi|315180487|gb|ADT87401.1| flagellar basal body rod modification protein D [Vibrio furnissii NCTC 11218] Length = 164 Score = 65.3 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 62/129 (48%), Gaps = 12/129 (9%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 T + + + + + S +L + F+ L++ Q+++QDP P ++ V QLA F+Q++ + Sbjct: 15 TVQSASTKTTTNANSTSSL-YNEFITLMVAQVQNQDPLNPTDGTQYVTQLAQFAQVQSTD 73 Query: 65 QMNSTLQE---LLKSNNLAQASSYIGKNIT--------NADGSISGVVNAIQVSSTGLTA 113 M S L ++ + + + +G++++ + +G+ +G + S+T Sbjct: 74 NMVSILNNNAIMMDNLQVLTTAGLVGQSVSVRTDTLHADGEGTYNGSIELTSSSNTVTLE 133 Query: 114 ITVDNTEIP 122 + + + Sbjct: 134 LVDEAGNVT 142 >gi|261341495|ref|ZP_05969353.1| putative basal-body rod modification protein FlgD [Enterobacter cancerogenus ATCC 35316] gi|288316291|gb|EFC55229.1| putative basal-body rod modification protein FlgD [Enterobacter cancerogenus ATCC 35316] Length = 234 Score = 65.3 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 43/97 (44%), Gaps = 3/97 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 + T + + + + F+KLL+ QI++QDP P +E V QLA +Q++ Sbjct: 11 SDTATTTDSGIAPNDNSAAGMTNLFMKLLVAQIQNQDPLNPTDGTEYVGQLAQLTQVQSM 70 Query: 64 VQMNSTLQE---LLKSNNLAQASSYIGKNITNADGSI 97 M +Q L+ + + +G+ + ++ Sbjct: 71 ENMTVGMQNIGVLMDNLQTLSTGNLVGQKVMVQTDTL 107 >gi|439980|gb|AAA73466.1| unknown [Treponema phagedenis] Length = 97 Score = 65.3 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 47/88 (53%), Gaps = 4/88 (4%) Query: 44 PMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSI--SGVV 101 PM+ ++ VAQ+A F+ +EQ ++ + ++L + ++A + +GK + DGSI SGV+ Sbjct: 3 PMEDTQFVAQMAQFTSLEQMTNVSQSFEKLNNLLSGSEAVNAVGKQVNIEDGSIKVSGVI 62 Query: 102 NAIQVSSTGLTAITVDNTEIPITTGIRI 129 A + + + VD +T + Sbjct: 63 TA--ATRGEIPQVQVDGKWYDWSTVKTV 88 >gi|296135674|ref|YP_003642916.1| flagellar hook capping protein [Thiomonas intermedia K12] gi|295795796|gb|ADG30586.1| flagellar hook capping protein [Thiomonas intermedia K12] Length = 232 Score = 65.0 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 3/76 (3%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQA 82 + F LL+TQ+ +QDP PM ++ AQLA FS M ++ L L QA Sbjct: 38 NTFYTLLVTQLTNQDPMNPMSNTDLSAQLAQFSTASGIQSMQQSMATLTAQLAQTQGLQA 97 Query: 83 SSYIGKNITNADGSIS 98 ++ +G+ + + SIS Sbjct: 98 ANLVGQTVVFDNNSIS 113 >gi|34497158|ref|NP_901373.1| flagellar basal body rod modification protein [Chromobacterium violaceum ATCC 12472] gi|34103015|gb|AAQ59378.1| basal-body rod modification protein FlgD [Chromobacterium violaceum ATCC 12472] Length = 225 Score = 65.0 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 3/79 (3%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74 + K+ G D F+ LL+ QI++Q P +P S+ V+QLA SQM+ + M LQ Sbjct: 26 AAGKNGAQPGNDMFMTLLLAQIRNQSPLDPADPSQFVSQLAQMSQMQSTQDMLKQLQSQG 85 Query: 75 KSNNLAQASSY---IGKNI 90 Q + +GK + Sbjct: 86 AMLRELQGVALGAQVGKPV 104 >gi|103488386|ref|YP_617947.1| flagellar hook capping protein [Sphingopyxis alaskensis RB2256] gi|98978463|gb|ABF54614.1| flagellar hook capping protein [Sphingopyxis alaskensis RB2256] Length = 100 Score = 65.0 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 1/79 (1%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 M IN N F + + +GQ FL+L+ Q+ QDP P+ +E VAQ+A FS + Sbjct: 1 MSINGISNN-NPVFHSPGTSQQMGQSDFLRLMTAQLSQQDPFNPVDNTEMVAQMAQFSSL 59 Query: 61 EQSVQMNSTLQELLKSNNL 79 + N+ L ++ + Sbjct: 60 AGISETNTVLAQISEQLAA 78 >gi|291617019|ref|YP_003519761.1| FlgD [Pantoea ananatis LMG 20103] gi|291152049|gb|ADD76633.1| FlgD [Pantoea ananatis LMG 20103] gi|327393470|dbj|BAK10892.1| basal-body rod modification protein FlgD [Pantoea ananatis AJ13355] Length = 223 Score = 65.0 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q+ FL +L+TQ+++QDPT PM S+ QLA + + ++N+TL + + ++ Q Sbjct: 31 QNQFLTMLVTQLQNQDPTNPMDNSQLTTQLAQINTLSGIEKLNTTLGSISGQISTSQSLQ 90 Query: 82 ASSYIGKNITNADGSI 97 +S+ IG + I Sbjct: 91 SSTLIGHGVMVNGSQI 106 >gi|294339844|emb|CAZ88207.1| putative Basal-body rod modification protein flgD [Thiomonas sp. 3As] Length = 232 Score = 64.2 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 3/76 (3%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQA 82 + F LL+TQ+ +QDP PM ++ AQLA FS M ++ L L QA Sbjct: 38 NTFYTLLVTQLTNQDPMNPMSNTDLSAQLAQFSTASGIQSMQQSMATLTAQLAQTQGLQA 97 Query: 83 SSYIGKNITNADGSIS 98 ++ +G+ + + S+S Sbjct: 98 ANLVGQTVVFDNNSLS 113 >gi|238028850|ref|YP_002913081.1| flagellar basal body rod modification protein [Burkholderia glumae BGR1] gi|237878044|gb|ACR30377.1| Flagellar hook capping protein [Burkholderia glumae BGR1] Length = 258 Score = 64.2 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 3/95 (3%) Query: 7 VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66 V+ + + + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+ Sbjct: 20 VDTMSNNSGVASTSASDLQQTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQL 79 Query: 67 N---STLQELLKSNNLAQASSYIGKNITNADGSIS 98 N S+L + + QA+ IG N+ ++S Sbjct: 80 NSSLSSLSSQITAGQQTQAALLIGSNVLAPGSTLS 114 >gi|83593868|ref|YP_427620.1| flagellar hook capping protein [Rhodospirillum rubrum ATCC 11170] gi|83576782|gb|ABC23333.1| Flagellar hook capping protein [Rhodospirillum rubrum ATCC 11170] Length = 229 Score = 63.8 bits (154), Expect = 8e-09, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 3/89 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 ++S SK FL +L TQ+K+Q+P P +E QL +SQ+EQ + N L Sbjct: 17 TSTSAESLSKLDENYKLFLTVLTTQLKNQNPLNPTDPNEMTQQLISYSQVEQQILGNQYL 76 Query: 71 QELL---KSNNLAQASSYIGKNITNADGS 96 + L+ + A +++GK + + Sbjct: 77 ENLVLSTNNQTAETALAFVGKEVVYTSDN 105 >gi|257866384|ref|ZP_05646037.1| predicted protein [Enterococcus casseliflavus EC30] gi|257873100|ref|ZP_05652753.1| predicted protein [Enterococcus casseliflavus EC10] gi|257800342|gb|EEV29370.1| predicted protein [Enterococcus casseliflavus EC30] gi|257807264|gb|EEV36086.1| predicted protein [Enterococcus casseliflavus EC10] Length = 143 Score = 63.4 bits (153), Expect = 9e-09, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 55/126 (43%), Gaps = 7/126 (5%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKA----SEQVAQLAVFSQMEQSVQM 66 +++K + D FLK+L + + + ++ ++QL F+ +E ++ Sbjct: 15 TSALTQTKKSSDISMDDFLKILAASMSNPSMGGSDSSGGGSTDYISQLVQFTTLESLNEL 74 Query: 67 NSTLQELLKSNNLAQASSYIGKNITNADG--SISGVVNAIQVSSTGLTAITVDNTEIPIT 124 + TL + QA S I K +T DG ++SG + ++ + G I V+ E ++ Sbjct: 75 SETLTTSVILQQQQQAFSLINKQVTLMDGIETLSGTIEKVRF-ANGYATIVVNGKEYSMS 133 Query: 125 TGIRIS 130 I Sbjct: 134 AIQEIG 139 >gi|114569240|ref|YP_755920.1| flagellar hook capping protein [Maricaulis maris MCS10] gi|114339702|gb|ABI64982.1| flagellar hook capping protein [Maricaulis maris MCS10] Length = 221 Score = 63.0 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 35/64 (54%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 ++ + + T + S++ + FL LL Q+K+QDP P+ +++ V QL FS + Sbjct: 2 VDAVSGLGATSPSLANSQTGLADNFEMFLTLLTEQMKNQDPLNPLDSTQFVNQLVDFSSV 61 Query: 61 EQSV 64 EQ + Sbjct: 62 EQQI 65 >gi|34558067|ref|NP_907882.1| flagellar basal body rod modification protein [Wolinella succinogenes DSM 1740] gi|34483785|emb|CAE10782.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Wolinella succinogenes] Length = 270 Score = 63.0 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 22/57 (38%), Positives = 35/57 (61%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72 + TL +DAF++L + Q+K QDPT PM+ + + Q A+ +Q+EQ +M TL Sbjct: 20 AQNNNGTLDKDAFMRLFLEQLKSQDPTSPMETEKILEQTAMLTQLEQQEEMKKTLSS 76 >gi|257871295|ref|ZP_05650948.1| predicted protein [Enterococcus gallinarum EG2] gi|257875997|ref|ZP_05655650.1| predicted protein [Enterococcus casseliflavus EC20] gi|325567525|ref|ZP_08144192.1| flagellar hook assembly protein [Enterococcus casseliflavus ATCC 12755] gi|257805459|gb|EEV34281.1| predicted protein [Enterococcus gallinarum EG2] gi|257810163|gb|EEV38983.1| predicted protein [Enterococcus casseliflavus EC20] gi|325158958|gb|EGC71104.1| flagellar hook assembly protein [Enterococcus casseliflavus ATCC 12755] Length = 143 Score = 62.6 bits (151), Expect = 1e-08, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 55/126 (43%), Gaps = 7/126 (5%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKA----SEQVAQLAVFSQMEQSVQM 66 +++K + D FLK+L + + + ++ ++QL F+ +E ++ Sbjct: 15 TSALTQTKKSSDISMDDFLKILAASMSNPSMGGSDSSGGGSTDYISQLVQFTTLESLNEL 74 Query: 67 NSTLQELLKSNNLAQASSYIGKNITNADG--SISGVVNAIQVSSTGLTAITVDNTEIPIT 124 + TL + QA S I K +T DG ++SG + ++ + G I V+ E ++ Sbjct: 75 SETLTTSVILQQQQQAFSLINKQVTLMDGTETLSGTIEKVRFA-NGYATIVVNGKEYSMS 133 Query: 125 TGIRIS 130 I Sbjct: 134 AIQEIG 139 >gi|255021353|ref|ZP_05293401.1| Flagellar basal-body rod modification protein FlgD [Acidithiobacillus caldus ATCC 51756] gi|254969216|gb|EET26730.1| Flagellar basal-body rod modification protein FlgD [Acidithiobacillus caldus ATCC 51756] Length = 231 Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 3/72 (4%) Query: 27 AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK---SNNLAQAS 83 F LL+TQ+ +QDP P+ + AQLA FS + S+L L+ N QA+ Sbjct: 40 TFYNLLVTQLTNQDPLNPLSNQDLSAQLAQFSVANGVQAIQSSLTGLMSQINQNQGLQAA 99 Query: 84 SYIGKNITNADG 95 S IGK++T + Sbjct: 100 SLIGKSVTTSGN 111 >gi|157147103|ref|YP_001454422.1| flagellar basal body rod modification protein [Citrobacter koseri ATCC BAA-895] gi|157084308|gb|ABV13986.1| hypothetical protein CKO_02880 [Citrobacter koseri ATCC BAA-895] Length = 227 Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 50/100 (50%), Gaps = 9/100 (9%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE---LLKSNNLAQASS 84 F++LL+ QI++QDP P +E V+QLA +Q++ M+ + L+ + + Sbjct: 35 FMQLLVAQIQNQDPLNPTDGTEYVSQLAQLTQVQSMETMSQLMANSSVLMDNLQTLTTGN 94 Query: 85 YIGKNI------TNADGSISGVVNAIQVSSTGLTAITVDN 118 +G+++ N+DG + ++G+T + V + Sbjct: 95 LVGQHVMVQTDAINSDGETTINGRLTLDHASGVTTVIVKD 134 >gi|85710163|ref|ZP_01041228.1| Flagellar hook capping protein [Erythrobacter sp. NAP1] gi|85688873|gb|EAQ28877.1| Flagellar hook capping protein [Erythrobacter sp. NAP1] Length = 117 Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 33/63 (52%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77 + +L + FL+L+ Q+ +QDP EP + +AQLA FS +E +TL E+ Sbjct: 29 SAAASLDSEDFLRLMTAQLANQDPLEPQSNEQMLAQLAQFSNLENGTASRATLDEISAKL 88 Query: 78 NLA 80 + Sbjct: 89 DAL 91 >gi|238782791|ref|ZP_04626820.1| Flagellar hook capping protein [Yersinia bercovieri ATCC 43970] gi|238716214|gb|EEQ08197.1| Flagellar hook capping protein [Yersinia bercovieri ATCC 43970] Length = 187 Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 3/65 (4%) Query: 36 IKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE---LLKSNNLAQASSYIGKNITN 92 +++QDPT PM ++ +QLA F+ Q+NSTL L+ S A+ ++G+N+ Sbjct: 1 MQNQDPTNPMDNNQLTSQLAQFNTASGVQQLNSTLNSVGTLVTSMQQMNAAEWVGRNVWI 60 Query: 93 ADGSI 97 S+ Sbjct: 61 EGESV 65 >gi|149184206|ref|ZP_01862524.1| flagellar hook capping protein [Erythrobacter sp. SD-21] gi|148831526|gb|EDL49959.1| flagellar hook capping protein [Erythrobacter sp. SD-21] Length = 71 Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 35/60 (58%) Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA 80 +LGQ FL+LL Q++ QDP P+ E ++Q+A FS + + N++L+ + +L Sbjct: 2 DSLGQGDFLRLLTVQMQQQDPFNPVDNKEMLSQMAQFSSLAGVAETNASLERIADQLDLL 61 >gi|262273530|ref|ZP_06051344.1| flagellar basal-body rod modification protein FlgD [Grimontia hollisae CIP 101886] gi|262222508|gb|EEY73819.1| flagellar basal-body rod modification protein FlgD [Grimontia hollisae CIP 101886] Length = 223 Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 37/68 (54%), Gaps = 3/68 (4%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQA 82 + FL +++ Q+++Q+P P ++ + QL + S +E + L L + + + QA Sbjct: 33 NDFLTMMVAQVQNQNPLNPTDGTQYLTQLGMMSAVESLESVKVGLNNLNIGMTNVEMLQA 92 Query: 83 SSYIGKNI 90 ++ +GK + Sbjct: 93 TNLVGKKV 100 >gi|58038900|ref|YP_190864.1| basal-body rod modification protein FlgD [Gluconobacter oxydans 621H] gi|58001314|gb|AAW60208.1| Basal-body rod modification protein FlgD [Gluconobacter oxydans 621H] Length = 246 Score = 62.3 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 3/75 (4%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS---NNLAQA 82 + FL LL TQ++HQDP+ P A+LA F+ ++Q V+ N+ L L+ + N +A A Sbjct: 56 NQFLTLLTTQLQHQDPSNPTSTDSFTAELAQFAGVQQQVETNTNLTSLISATQDNQMASA 115 Query: 83 SSYIGKNITNADGSI 97 S IGK T + S+ Sbjct: 116 VSLIGKTTTASSSSL 130 >gi|163789643|ref|ZP_02184081.1| flagellar hook assembly protein [Carnobacterium sp. AT7] gi|159875175|gb|EDP69241.1| flagellar hook assembly protein [Carnobacterium sp. AT7] Length = 143 Score = 62.3 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 58/136 (42%), Gaps = 14/136 (10%) Query: 7 VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKA--------SEQVAQLAVFS 58 + + S K L + FL+++ IK P+ P ++ ++ +AQLA F+ Sbjct: 9 MGSIKNVSSTEKKNNELATEDFLQIMAASIKT--PSLPGESGGSGGGGETDYLAQLAQFN 66 Query: 59 QMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNAD---GSISGVVNAIQVSSTGLTAIT 115 ++Q ++ TL + Q S +GK + A G ++G V+ ++ G I Sbjct: 67 TLDQLTTVSETLNMSVLMTQQQQGLSLLGKEVKVAGAESGFVNGTVDKVKFDK-GYATIQ 125 Query: 116 VDNTEIPITTGIRISN 131 V + + + + + Sbjct: 126 VGGKDYALNDILEVGD 141 >gi|237752019|ref|ZP_04582499.1| flagellar biosynthesis protein [Helicobacter winghamensis ATCC BAA-430] gi|229376586|gb|EEO26677.1| flagellar biosynthesis protein [Helicobacter winghamensis ATCC BAA-430] Length = 262 Score = 61.9 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 31/53 (58%) Query: 29 LKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ 81 ++L + Q+K+QDPT PM+ E + Q A +Q+E +M ++++ + Q Sbjct: 1 MRLFLEQLKNQDPTAPMETQEILTQTAQLTQVEAQEKMKKAMEDMTTTMKSMQ 53 >gi|54307269|ref|YP_128289.1| flagellar basal-body rod modification protein FlgD [Photobacterium profundum SS9] gi|46911689|emb|CAG18487.1| Hypothetical flagellar basal-body rod modification protein FlgD [Photobacterium profundum SS9] Length = 224 Score = 61.9 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 53/126 (42%), Gaps = 12/126 (9%) Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67 + Q + + + FL +++ QI++Q+P EP ++ + QL + S +E + Sbjct: 16 STEQNSQQVAGNGMNPSSNQFLTMMVAQIQNQNPLEPADGTQFLTQLGMMSAVESLEGVK 75 Query: 68 STLQEL---LKSNNLAQASSYIGKNITNADGS---------ISGVVNAIQVSSTGLTAIT 115 + + + + + + QA++ +GK + I G V Q + T + Sbjct: 76 TGMMNMNIGITNLEMLQATNLVGKKVLMEANQGVDVSEGQIIDGRVQFDQPADTAKVMVY 135 Query: 116 VDNTEI 121 + ++ Sbjct: 136 DEEGKV 141 >gi|153953784|ref|YP_001394549.1| hypothetical protein CKL_1159 [Clostridium kluyveri DSM 555] gi|219854400|ref|YP_002471522.1| hypothetical protein CKR_1057 [Clostridium kluyveri NBRC 12016] gi|146346665|gb|EDK33201.1| FlgD [Clostridium kluyveri DSM 555] gi|219568124|dbj|BAH06108.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 265 Score = 61.9 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 61/130 (46%), Gaps = 14/130 (10%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEP--MKASEQVAQLAVFSQ 59 + +++ + K + + + FLK+L ++++QDPT+ ++E ++QLA FS Sbjct: 48 DKSSDTTENGTKIVKKNTGYDMDLNMFLKILCAELENQDPTDSSSQGSTEYISQLAQFSA 107 Query: 60 MEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNT 119 ++Q + +N+T N + A+S + K +T +D G + + + D Sbjct: 108 LQQMMNLNNT-------NKVTTANSLVNKYVTLSDRDSEG-----NYITGKVVGVVKDGD 155 Query: 120 EIPITTGIRI 129 ++ + I Sbjct: 156 DVELKLITGI 165 >gi|170737037|ref|YP_001778297.1| flagellar hook capping protein [Burkholderia cenocepacia MC0-3] gi|169819225|gb|ACA93807.1| flagellar hook capping protein [Burkholderia cenocepacia MC0-3] Length = 241 Score = 61.9 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 9/91 (9%) Query: 1 MEINTEVNPTQQ-----EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55 M+I VN + + + F +LL+ Q+K+QDP PM+A++ V Q A Sbjct: 1 MDIQNNVNNVTGVGGSVATPTAGNGEGDVSAMFTRLLVAQVKNQDPLAPMEANQFVTQFA 60 Query: 56 VFSQMEQSVQMNSTLQELLKSNNLAQASSYI 86 SQ+E TL L + Q S + Sbjct: 61 QMSQVEAM----RTLANLSAATARTQESMLV 87 >gi|207110586|ref|ZP_03244748.1| flagellar basal body rod modification protein [Helicobacter pylori HPKX_438_CA4C1] Length = 95 Score = 61.5 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 36/62 (58%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75 + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E + T+QE+ Sbjct: 2 ATTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEVAS 61 Query: 76 SN 77 + Sbjct: 62 AM 63 >gi|316936124|ref|YP_004111106.1| flagellar hook capping protein [Rhodopseudomonas palustris DX-1] gi|315603838|gb|ADU46373.1| flagellar hook capping protein [Rhodopseudomonas palustris DX-1] Length = 222 Score = 61.1 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 3/76 (3%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL---AQA 82 + FL LL+TQ+++Q+P EP ++ V+QL ++ EQ +NS L L S N + Sbjct: 31 NDFLTLLVTQLQNQNPLEPTDTNDFVSQLTSYANFEQQQALNSNLSSLTASLNSLLTLNS 90 Query: 83 SSYIGKNITNADGSIS 98 S+YIG+ +T S + Sbjct: 91 SNYIGQTVTAKADSGT 106 >gi|270156915|ref|ZP_06185572.1| flagellar basal body rod modification protein FlgD [Legionella longbeachae D-4968] gi|289164658|ref|YP_003454796.1| Flagellar basal-body rod modification protein FlgD [Legionella longbeachae NSW150] gi|269988940|gb|EEZ95194.1| flagellar basal body rod modification protein FlgD [Legionella longbeachae D-4968] gi|288857831|emb|CBJ11677.1| Flagellar basal-body rod modification protein FlgD [Legionella longbeachae NSW150] Length = 224 Score = 61.1 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 3/77 (3%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--- 73 S KK + FL ++ QI++QD + E ++QLA F+ + + M +LQ++ Sbjct: 21 SPLKKNFEEQVFLHSMVEQIENQDMMQRQINHEFLSQLAQFATHDGCIAMQESLQQMSTS 80 Query: 74 LKSNNLAQASSYIGKNI 90 L+SN QAS+ +G+ + Sbjct: 81 LQSNQALQASALVGRKV 97 >gi|254255086|ref|ZP_04948403.1| Flagellar hook capping protein [Burkholderia dolosa AUO158] gi|124899731|gb|EAY71574.1| Flagellar hook capping protein [Burkholderia dolosa AUO158] Length = 220 Score = 61.1 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 1/65 (1%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSY 85 + F LLI QI++QDP PM AS+ V Q A SQ+E + + L L + Sbjct: 34 NLFTTLLIAQIRNQDPLAPMDASQFVNQFAQMSQVEAMQTL-ANLTALTAGMQESTLVVT 92 Query: 86 IGKNI 90 +G + Sbjct: 93 LGAQV 97 >gi|330818586|ref|YP_004362291.1| basal-body rod modification protein FlgD [Burkholderia gladioli BSR3] gi|327370979|gb|AEA62335.1| basal-body rod modification protein FlgD [Burkholderia gladioli BSR3] Length = 259 Score = 61.1 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 4/99 (4%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 +N T S + S L Q FL LL+TQ+++QDPT P+ +S+ +QLA + + Sbjct: 14 VNNTPTDTMNANSSNTSAADL-QQTFLTLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSG 72 Query: 63 SVQ---MNSTLQELLKSNNLAQASSYIGKNITNADGSIS 98 Q ++L + + QA+ +G N+ ++S Sbjct: 73 IAQLNSSLTSLSSQITAGQQTQAAMLVGSNVLAPGNTLS 111 >gi|313681186|ref|YP_004058924.1| flagellar hook capping protein [Sulfuricurvum kujiense DSM 16994] gi|313154046|gb|ADR32724.1| flagellar hook capping protein [Sulfuricurvum kujiense DSM 16994] Length = 224 Score = 60.7 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 3/84 (3%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 ++ K +LG+D FLKLL+ ++K+QDPT PM + + ++Q + + +E + N L+ L S Sbjct: 24 NEDKSSLGKDDFLKLLLLELKYQDPTSPMDSEKILSQTSQLATLESTENTNKALETLAAS 83 Query: 77 -NNLAQASSY--IGKNITNADGSI 97 + Q S IGK +I Sbjct: 84 LTSSMQYSGISAIGKMADTGSNAI 107 >gi|213615927|ref|ZP_03371753.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 97 Score = 60.3 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 3/86 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 NT V T S + S Q +FL LL+ Q+K+QDPT P++ +E QLA S + Sbjct: 12 NTGVKTTTGSGSMTGSNAADLQSSFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGI 71 Query: 64 VQMNSTLQEL---LKSNNLAQASSYI 86 ++N+TL + + ++ QA++ I Sbjct: 72 EKLNTTLGAISGQIDNSQSLQATTLI 97 >gi|326386929|ref|ZP_08208543.1| flagellar hook capping protein [Novosphingobium nitrogenifigens DSM 19370] gi|326208609|gb|EGD59412.1| flagellar hook capping protein [Novosphingobium nitrogenifigens DSM 19370] Length = 90 Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 35/64 (54%) Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA 80 LG FLKLL Q+ HQDPT+P+ ++ VAQLA FS + + Q N+ L + Sbjct: 26 NKLGATDFLKLLTAQLNHQDPTQPVDNTQMVAQLAQFSSLAAANQTNTQLSTISDQIGKL 85 Query: 81 QASS 84 ++ Sbjct: 86 GGTT 89 >gi|90422389|ref|YP_530759.1| flagellar hook capping protein [Rhodopseudomonas palustris BisB18] gi|90104403|gb|ABD86440.1| flagellar hook capping protein [Rhodopseudomonas palustris BisB18] Length = 218 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 43/75 (57%), Gaps = 3/75 (4%) Query: 27 AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL---AQAS 83 FL LL+T++++Q+P +P ++ V+Q+ ++ EQ +N+ L L S N ++ Sbjct: 28 DFLTLLVTELQNQNPLDPTDTTDFVSQMTSYANFEQQQTLNTNLSSLATSFNSLLTLNST 87 Query: 84 SYIGKNITNADGSIS 98 +YIG+ +T S + Sbjct: 88 NYIGQTVTAKADSAT 102 >gi|116626494|ref|YP_828650.1| flagellar hook capping protein [Candidatus Solibacter usitatus Ellin6076] gi|116229656|gb|ABJ88365.1| flagellar hook capping protein [Candidatus Solibacter usitatus Ellin6076] Length = 99 Score = 58.8 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 36/66 (54%) Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67 + T + + + +D FL+LL+ QIK+QDP P + + QLA F Q+EQS+ M Sbjct: 13 SGTSAASTSTGGTSAVTKDMFLQLLVAQIKNQDPLSPTDGVQFLTQLAQFQQLEQSINMG 72 Query: 68 STLQEL 73 + + Sbjct: 73 QDVTAI 78 >gi|39933721|ref|NP_945997.1| basal-body rod modification protein flgD [Rhodopseudomonas palustris CGA009] gi|39647568|emb|CAE26088.1| possible basal-body rod modification protein flgD [Rhodopseudomonas palustris CGA009] Length = 265 Score = 58.8 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 38/75 (50%), Gaps = 3/75 (4%) Query: 27 AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL---AQAS 83 FL LLI+++++QDP ++ + QL ++ Q ++NS++ L S + + Sbjct: 75 DFLSLLISELQNQDPLNATSTTDFINQLTSYANFSQQQEINSSMTSLANSFSSLVTLNSV 134 Query: 84 SYIGKNITNADGSIS 98 +YIG + + + Sbjct: 135 NYIGHTVEAKTDTAT 149 >gi|328958278|ref|YP_004375664.1| putative flagellar hook assembly protein [Carnobacterium sp. 17-4] gi|328674602|gb|AEB30648.1| putative flagellar hook assembly protein [Carnobacterium sp. 17-4] Length = 142 Score = 58.0 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 58/133 (43%), Gaps = 14/133 (10%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKA--------SEQVAQLAVFSQME 61 + S K+ L + FL+++ IK P+ P + ++ +AQLA F+ ++ Sbjct: 11 SVNNTSTRKTGTELSTEDFLQIMAASIKM--PSMPGEGGSGGGGGETDYLAQLAQFNTLD 68 Query: 62 QSVQMNSTLQELLKSNNLAQASSYIGKNITNAD---GSISGVVNAIQVSSTGLTAITVDN 118 Q ++ TL + QA S + K + A G +SG V+ ++ G I VD Sbjct: 69 QLTTVSETLNLNVLMTQQQQALSLLNKEVKVAGADSGFVSGTVDKVKFDQ-GYATIQVDG 127 Query: 119 TEIPITTGIRISN 131 + + + + + Sbjct: 128 KDYTLNDILEVGD 140 >gi|301648571|ref|ZP_07248286.1| flagellar hook capping protein [Escherichia coli MS 146-1] gi|301073358|gb|EFK88164.1| flagellar hook capping protein [Escherichia coli MS 146-1] Length = 246 Score = 57.6 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 3/68 (4%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82 D FL L + +I++QDPT+P A+E + QL+ +Q+ +M+ +T L+ + + Sbjct: 46 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMAL 105 Query: 83 SSYIGKNI 90 + +G +I Sbjct: 106 GNLVGDDI 113 >gi|283784084|ref|YP_003363949.1| lateral flagellar rod protein [Citrobacter rodentium ICC168] gi|282947538|emb|CBG87090.1| lateral flagellar rod protein [Citrobacter rodentium ICC168] Length = 270 Score = 57.6 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 10/89 (11%) Query: 24 GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLA 80 G + FL L + +I++QDPT+P ++ + QL+ +Q+ +M+ +T L+ + + Sbjct: 63 GVETFLTLFVAEIQNQDPTDPADPTDYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVM 122 Query: 81 QASSYIGKNIT-------NADGSISGVVN 102 + +G +I +D +I G V Sbjct: 123 ALGNLVGDDIMVQTTTLQVSDSAIEGRVT 151 >gi|300900361|ref|ZP_07118537.1| flagellar hook capping protein [Escherichia coli MS 198-1] gi|300356129|gb|EFJ71999.1| flagellar hook capping protein [Escherichia coli MS 198-1] Length = 225 Score = 57.6 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 3/68 (4%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82 D FL L + +I++QDPT+P A+E + QL+ +Q+ +M+ +T L+ + + Sbjct: 25 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMAL 84 Query: 83 SSYIGKNI 90 + +G +I Sbjct: 85 GNLVGDDI 92 >gi|152990376|ref|YP_001356098.1| flagellar hook capping protein FlgD [Nitratiruptor sp. SB155-2] gi|151422237|dbj|BAF69741.1| flagellar hook capping protein FlgD [Nitratiruptor sp. SB155-2] Length = 220 Score = 57.2 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 37/87 (42%), Gaps = 1/87 (1%) Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 + K+ + + ++ FLK+L+ + QDP E ++ + ++E +++ Sbjct: 18 NVYDKNVDQSKMDKEGFLKVLLANFQFQDPFEAQDIAKFIDNTVKLRELEVLNNFETSVN 77 Query: 72 ELLK-SNNLAQASSYIGKNITNADGSI 97 L + L A++ IGK + Sbjct: 78 TLANGTQQLLSAANLIGKKVVYTGNET 104 >gi|295687863|ref|YP_003591556.1| flagellar hook capping protein [Caulobacter segnis ATCC 21756] gi|295429766|gb|ADG08938.1| flagellar hook capping protein [Caulobacter segnis ATCC 21756] Length = 94 Score = 57.2 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 24/57 (42%), Positives = 38/57 (66%) Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78 LG FLKLL+TQ+++Q+P +P +E +QLA +SQ+EQ + MN TL + + + Sbjct: 25 KLGTTDFLKLLMTQLENQNPLDPSDPTEFTSQLATYSQLEQQISMNDTLTTMSDTMS 81 >gi|315616828|gb|EFU97445.1| flagellar hook capping family protein [Escherichia coli 3431] Length = 244 Score = 56.9 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 3/68 (4%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82 D FL L + +I++QDPT+P A+E + QL+ +Q+ +M+ +T L+ + + Sbjct: 37 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMAL 96 Query: 83 SSYIGKNI 90 + +G +I Sbjct: 97 GNLVGDDI 104 >gi|27464951|gb|AAN63048.1| flagellar component FlgD [Vibrio vulnificus] Length = 181 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 3/52 (5%) Query: 42 TEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQASSYIGKNI 90 +P+ + +AQ+A F+ ++ +MNS + L + SN QASS +G+++ Sbjct: 1 FKPVSNDQMIAQMASFATVDGIGKMNSQFESLNSSMTSNQALQASSLVGRDV 52 >gi|300854214|ref|YP_003779198.1| putative flagellar hook protein FlgD [Clostridium ljungdahlii DSM 13528] gi|300434329|gb|ADK14096.1| predicted flagellar hook protein FlgD [Clostridium ljungdahlii DSM 13528] Length = 239 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 57/127 (44%), Gaps = 14/127 (11%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQ--DPTEPMKASEQVAQLAVFS 58 ++ N+ + T K + ++ FLK+L ++ +Q ++ +++ ++QLA FS Sbjct: 20 IDTNSSSDTTSNGTKIVKKNNDIDKNMFLKILSAELANQDPTSSDSQSSTQYISQLAQFS 79 Query: 59 QMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNAD-----GSISGVVNAIQVSSTGLTA 113 +EQ +NS S + A+S + K +T +D ++SG V + + Sbjct: 80 SLEQMANLNS-------STKMGTANSLMNKYVTFSDTDEQGNNVSGQVVGVIKDGDDIEL 132 Query: 114 ITVDNTE 120 + E Sbjct: 133 NVLMGQE 139 >gi|327254553|gb|EGE66169.1| flagellar hook capping family protein [Escherichia coli STEC_7v] Length = 237 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 3/89 (3%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 T + T + S + D FL L + +I++QDPT+P A+E + QL+ +Q+ Sbjct: 16 TAESNTVAASDTTSSSDSSPVDTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMME 75 Query: 65 QMN---STLQELLKSNNLAQASSYIGKNI 90 +M+ +T L+ + + + +G +I Sbjct: 76 EMSVQANTNAVLMSNIQVMALGNLVGDDI 104 >gi|323975931|gb|EGB71025.1| flagellar hook capping protein [Escherichia coli TW10509] Length = 237 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 3/68 (4%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82 D FL L + +I++QDPT+P A+E + QL+ +Q+ +M+ +T L+ + + Sbjct: 37 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMAL 96 Query: 83 SSYIGKNI 90 + +G +I Sbjct: 97 GNLVGDDI 104 >gi|170679856|ref|YP_001742372.1| lateral flagellar rod protein LfgD [Escherichia coli SMS-3-5] gi|170517574|gb|ACB15752.1| lateral flagellar rod protein LfgD [Escherichia coli SMS-3-5] Length = 237 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 3/68 (4%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82 D FL L + +I++QDPT+P A+E + QL+ +Q+ +M+ +T L+ + + Sbjct: 37 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMAL 96 Query: 83 SSYIGKNI 90 + +G +I Sbjct: 97 GNLVGDDI 104 >gi|323341380|ref|ZP_08081624.1| flagellar hook assembly protein [Lactobacillus ruminis ATCC 25644] gi|323091257|gb|EFZ33885.1| flagellar hook assembly protein [Lactobacillus ruminis ATCC 25644] Length = 157 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 55/127 (43%), Gaps = 9/127 (7%) Query: 7 VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKA-----SEQVAQLAVFSQME 61 +Q + + T+ D FLK++ T + + + + ++ ++Q+A FS ME Sbjct: 26 AANSQTLKNIGNNNSTIKIDDFLKIISTAMSNPSLSGDSSSSGSSGTDYISQMAQFSTME 85 Query: 62 QSVQMNSTLQELLKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDN 118 ++N T+ + + QA S IGK + D +G V + G I+V+ Sbjct: 86 TLNELNKTVTTAMMISQQQQAFSLIGKTVDMVDEKNQPFTGKVERVSFK-NGFAQISVNG 144 Query: 119 TEIPITT 125 +++ Sbjct: 145 KYYDMSS 151 >gi|331645417|ref|ZP_08346521.1| putative flagellar hook capping protein [Escherichia coli M605] gi|331045579|gb|EGI17705.1| putative flagellar hook capping protein [Escherichia coli M605] Length = 237 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 3/68 (4%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82 D FL L + +I++QDPT+P A+E + QL+ +Q+ +M+ +T L+ + + Sbjct: 37 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMAL 96 Query: 83 SSYIGKNI 90 + +G +I Sbjct: 97 GNLVGDDI 104 >gi|300936124|ref|ZP_07151063.1| flagellar hook capping protein [Escherichia coli MS 21-1] gi|306813305|ref|ZP_07447498.1| putative lateral flagellar hook assembly protein [Escherichia coli NC101] gi|300458702|gb|EFK22195.1| flagellar hook capping protein [Escherichia coli MS 21-1] gi|305854068|gb|EFM54507.1| putative lateral flagellar hook assembly protein [Escherichia coli NC101] Length = 237 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 3/68 (4%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82 D FL L + +I++QDPT+P A+E + QL+ +Q+ +M+ +T L+ + + Sbjct: 37 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMAL 96 Query: 83 SSYIGKNI 90 + +G +I Sbjct: 97 GNLVGDDI 104 >gi|170021361|ref|YP_001726315.1| flagellar hook capping protein [Escherichia coli ATCC 8739] gi|260853465|ref|YP_003227356.1| putative lateral flagellar hook assembly protein [Escherichia coli O26:H11 str. 11368] gi|260866412|ref|YP_003232814.1| putative lateral flagellar hook assembly protein [Escherichia coli O111:H- str. 11128] gi|169756289|gb|ACA78988.1| flagellar hook capping protein [Escherichia coli ATCC 8739] gi|257752114|dbj|BAI23616.1| predicted lateral flagellar hook assembly protein [Escherichia coli O26:H11 str. 11368] gi|257762768|dbj|BAI34263.1| predicted lateral flagellar hook assembly protein [Escherichia coli O111:H- str. 11128] gi|323158104|gb|EFZ44203.1| flagellar hook capping family protein [Escherichia coli EPECa14] gi|323178495|gb|EFZ64073.1| flagellar hook capping family protein [Escherichia coli 1180] Length = 237 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 3/68 (4%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82 D FL L + +I++QDPT+P A+E + QL+ +Q+ +M+ +T L+ + + Sbjct: 37 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMAL 96 Query: 83 SSYIGKNI 90 + +G +I Sbjct: 97 GNLVGDDI 104 >gi|293408366|ref|ZP_06652205.1| conserved hypothetical protein [Escherichia coli B354] gi|291471544|gb|EFF14027.1| conserved hypothetical protein [Escherichia coli B354] Length = 234 Score = 56.1 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 3/68 (4%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82 D FL L + +I++QDPT+P A+E + QL+ +Q+ +M+ +T L+ + + Sbjct: 34 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMAL 93 Query: 83 SSYIGKNI 90 + +G +I Sbjct: 94 GNLVGDDI 101 >gi|218703524|ref|YP_002411043.1| lateral flagellar rod FlgD-like protein [Escherichia coli UMN026] gi|293403354|ref|ZP_06647445.1| predicted protein [Escherichia coli FVEC1412] gi|298378966|ref|ZP_06988847.1| flagellar basal-body rod modification protein FlgD [Escherichia coli FVEC1302] gi|218430621|emb|CAR11487.1| Lateral flagellar rod protein (FlgD-like) [Escherichia coli UMN026] gi|291429207|gb|EFF02227.1| predicted protein [Escherichia coli FVEC1412] gi|298280079|gb|EFI21583.1| flagellar basal-body rod modification protein FlgD [Escherichia coli FVEC1302] Length = 237 Score = 56.1 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 3/68 (4%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82 D FL L + +I++QDPT+P A+E + QL+ +Q+ +M+ +T L+ + + Sbjct: 37 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMAL 96 Query: 83 SSYIGKNI 90 + +G +I Sbjct: 97 GNLVGDDI 104 >gi|331671803|ref|ZP_08372599.1| putative flagellar hook capping protein [Escherichia coli TA280] gi|331070792|gb|EGI42151.1| putative flagellar hook capping protein [Escherichia coli TA280] Length = 237 Score = 56.1 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 3/68 (4%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82 D FL L + +I++QDPT+P A+E + QL+ +Q+ +M+ +T L+ + + Sbjct: 37 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMAL 96 Query: 83 SSYIGKNI 90 + +G +I Sbjct: 97 GNLVGDDI 104 >gi|307136857|ref|ZP_07496213.1| putative lateral flagellar hook assembly protein [Escherichia coli H736] gi|331640712|ref|ZP_08341859.1| putative flagellar hook capping protein [Escherichia coli H736] gi|331040086|gb|EGI12294.1| putative flagellar hook capping protein [Escherichia coli H736] Length = 237 Score = 56.1 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 3/68 (4%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82 D FL L + +I++QDPT+P A+E + QL+ +Q+ +M+ +T L+ + + Sbjct: 37 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMAL 96 Query: 83 SSYIGKNI 90 + +G +I Sbjct: 97 GNLVGDDI 104 >gi|86747890|ref|YP_484386.1| flagellar hook capping protein [Rhodopseudomonas palustris HaA2] gi|86570918|gb|ABD05475.1| Flagellar hook capping protein [Rhodopseudomonas palustris HaA2] Length = 220 Score = 56.1 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 3/76 (3%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL---AQA 82 + F+ LLIT++++Q+P EP ++ V QL ++ EQ +N+ L L S N + Sbjct: 29 NEFMTLLITELQNQNPLEPTSTTDFVNQLTSYANYEQQQTLNANLTTLTTSLNSLLTLNS 88 Query: 83 SSYIGKNITNADGSIS 98 S+YIG+ +T + + Sbjct: 89 SNYIGQTVTAKADTGT 104 >gi|323191537|gb|EFZ76798.1| flagellar hook capping family protein [Escherichia coli RN587/1] Length = 237 Score = 56.1 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 3/68 (4%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82 D FL L + +I++QDPT+P A+E + QL+ +Q+ +M+ +T L+ + + Sbjct: 37 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMAL 96 Query: 83 SSYIGKNI 90 + +G +I Sbjct: 97 GNLVGDDI 104 >gi|225871933|ref|YP_002753387.1| FlgD domain protein [Acidobacterium capsulatum ATCC 51196] gi|225793508|gb|ACO33598.1| FlgD domain protein [Acidobacterium capsulatum ATCC 51196] Length = 210 Score = 56.1 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 30/55 (54%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 S + + + FL LL+ ++K+QDPT ++ + QL + ++Q + +N L Sbjct: 52 NSTATSGITSNDFLTLLVAEMKNQDPTSNTDPNQYIDQLVQVNSLQQLISINQEL 106 >gi|323181546|gb|EFZ66966.1| flagellar hook capping family protein [Escherichia coli 1357] Length = 237 Score = 55.7 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 3/68 (4%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82 D FL L + +I++QDPT+P A+E + QL+ +Q+ +M+ +T L+ + + Sbjct: 37 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMAL 96 Query: 83 SSYIGKNI 90 + +G +I Sbjct: 97 GNLVGDDI 104 >gi|300817271|ref|ZP_07097489.1| flagellar hook capping protein [Escherichia coli MS 107-1] gi|307313520|ref|ZP_07593141.1| flagellar hook capping protein [Escherichia coli W] gi|300530247|gb|EFK51309.1| flagellar hook capping protein [Escherichia coli MS 107-1] gi|306906688|gb|EFN37199.1| flagellar hook capping protein [Escherichia coli W] gi|315059541|gb|ADT73868.1| flagellar hook assembly protein [Escherichia coli W] gi|323379900|gb|ADX52168.1| flagellar hook capping protein [Escherichia coli KO11] Length = 237 Score = 55.7 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 3/68 (4%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82 D FL L + +I++QDPT+P A+E + QL+ +Q+ +M+ +T L+ + + Sbjct: 37 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMAL 96 Query: 83 SSYIGKNI 90 + +G +I Sbjct: 97 GNLVGDDI 104 >gi|256020227|ref|ZP_05434092.1| flagellar hook capping protein [Shigella sp. D9] gi|332281389|ref|ZP_08393802.1| lateral flagellar rod protein [Shigella sp. D9] gi|332103741|gb|EGJ07087.1| lateral flagellar rod protein [Shigella sp. D9] Length = 237 Score = 55.3 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 3/68 (4%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82 D FL L + +I++QDPT+P A+E + QL+ +Q+ +M+ +T L+ + + Sbjct: 37 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMAL 96 Query: 83 SSYIGKNI 90 + +G +I Sbjct: 97 GNLVGDDI 104 >gi|192289141|ref|YP_001989746.1| flagellar hook capping protein [Rhodopseudomonas palustris TIE-1] gi|192282890|gb|ACE99270.1| flagellar hook capping protein [Rhodopseudomonas palustris TIE-1] Length = 222 Score = 54.2 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 38/75 (50%), Gaps = 3/75 (4%) Query: 27 AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL---AQAS 83 FL LLI+++++QDP ++ + QL ++ Q ++NS++ L S + + Sbjct: 32 DFLSLLISELQNQDPLNATSTTDFINQLTSYANFSQQQEINSSMTSLANSFSSLVTLNSV 91 Query: 84 SYIGKNITNADGSIS 98 +YIG + + + Sbjct: 92 NYIGHTVEAKTDTAT 106 >gi|224825776|ref|ZP_03698880.1| flagellar basal body rod modification protein [Lutiella nitroferrum 2002] gi|224602000|gb|EEG08179.1| flagellar basal body rod modification protein [Lutiella nitroferrum 2002] Length = 226 Score = 53.8 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 3/100 (3%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 + +T + + + ++ G D F+ LL+ QIK+Q+P +P S+ V QL +QM Sbjct: 8 LNDSTASSQGATPVASNGQSQSSGSDMFMTLLMAQIKNQNPLDPADPSQFVNQLVQMNQM 67 Query: 61 EQSVQMNSTLQELLKSNNLAQASSY---IGKNITNADGSI 97 + S+ M S L++ Q +G ++ ++ Sbjct: 68 QTSLGMLSQLKDNAVLLRELQGLGLGNQVGNSVLVQSNTV 107 >gi|188493605|ref|ZP_03000875.1| flagellar hook capping protein [Escherichia coli 53638] gi|188488804|gb|EDU63907.1| flagellar hook capping protein [Escherichia coli 53638] Length = 237 Score = 53.4 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 39/68 (57%), Gaps = 3/68 (4%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82 D FL L + +I++Q+PT+P A+E + QL+ +Q+ +M+ +T L+ + + Sbjct: 37 DTFLTLFVAEIQNQEPTDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMAL 96 Query: 83 SSYIGKNI 90 + +G +I Sbjct: 97 GNLVGDDI 104 >gi|319790417|ref|YP_004152050.1| flagellar hook capping protein [Thermovibrio ammonificans HB-1] gi|317114919|gb|ADU97409.1| flagellar hook capping protein [Thermovibrio ammonificans HB-1] Length = 218 Score = 53.4 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 43/105 (40%), Gaps = 8/105 (7%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKS 76 + ++ FLK+L+ ++ QDP + S+ + +ME +++ ++ L S Sbjct: 25 NSKMSKEDFLKILLANLQWQDPLQAEDISQFIDDSVKLREMEALNDFENSVDKMVSTLNS 84 Query: 77 NNLAQASSYIGKNITNADGSI-----SGVVNAIQVSSTGLTAITV 116 +L AS +IGK I G V+ S + V Sbjct: 85 LSLFYASGFIGKLILYKGNQTYVENGKGYVSFTLPSDAASVTVEV 129 >gi|218462420|ref|ZP_03502511.1| flagellar basal body rod modification protein [Rhizobium etli Kim 5] Length = 61 Score = 53.4 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 26/42 (61%), Positives = 34/42 (80%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58 ++ K TL D FL+LLI Q+K+QDPT+PM ASEQ++QLA FS Sbjct: 20 AQKKATLNYDNFLQLLIAQMKNQDPTDPMDASEQMSQLASFS 61 >gi|328545576|ref|YP_004305685.1| flagellar hook capping protein [polymorphum gilvum SL003B-26A1] gi|326415317|gb|ADZ72380.1| Flagellar hook capping protein [Polymorphum gilvum SL003B-26A1] Length = 222 Score = 53.4 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 35/75 (46%), Gaps = 3/75 (4%) Query: 27 AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN---LAQAS 83 FL L++TQ+++Q+P +P + ++ ++ + +++ L + S + Sbjct: 31 DFLSLMLTQLQNQNPLDPTDTDTYLDRMVSYASYDTQTEISEQLSSIASSVSQMISGSGL 90 Query: 84 SYIGKNITNADGSIS 98 Y+G+ + + + Sbjct: 91 GYLGQTVEAYGNTTT 105 >gi|295690743|ref|YP_003594436.1| flagellar hook capping protein [Caulobacter segnis ATCC 21756] gi|295432646|gb|ADG11818.1| flagellar hook capping protein [Caulobacter segnis ATCC 21756] Length = 242 Score = 53.0 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 6/120 (5%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 + + ++ + FLKLL TQ+K+QDP P ++ Q+ + +EQ Sbjct: 7 SQNTTSVLDRINNGRTSMASNTETFLKLLTTQLKNQDPLSPTDTTQMTQQITQMTGVEQQ 66 Query: 64 VQMNSTLQELLKSNN---LAQASSYIGKNITNADGSIS---GVVNAIQVSSTGLTAITVD 117 + N L L+ N L + S IGK +T S + G + G T++TV+ Sbjct: 67 LVTNDLLAALVGMNTGTGLTEGVSMIGKQVTATTDSSTLKGGKAAFSWTQAGGSTSLTVE 126 >gi|188997540|ref|YP_001931791.1| flagellar hook capping protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188932607|gb|ACD67237.1| flagellar hook capping protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 218 Score = 53.0 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 41/97 (42%), Gaps = 5/97 (5%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVA---QLAVFSQM 60 ++ + + + + Q+ FLK+L+ +K QDP S+ + +L + Sbjct: 11 DSATSNKPKVVDANYDNSKMSQNDFLKVLLADLKWQDPMNAKDISDFIDNSVKLRQMESL 70 Query: 61 EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSI 97 + ++ TL +N++ ASS IGK + Sbjct: 71 DSIQKLVDTLSTF--TNSIVNASSMIGKKVKYEGNQT 105 >gi|50954408|ref|YP_061696.1| flagellar hook assembly protein [Leifsonia xyli subsp. xyli str. CTCB07] gi|50950890|gb|AAT88591.1| flagellar hook assembly protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 90 Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 3/64 (4%) Query: 6 EVNPTQQEFSKSKSKK---TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 N T ++ +++ T+G + F+ LL+ Q+++QDPT PM ++ V Q + M Sbjct: 9 SANSTPSLYATQPTRQPVQTMGAEQFMHLLVVQLQNQDPTSPMDTAQMVQQTTQLAMMRS 68 Query: 63 SVQM 66 + Sbjct: 69 MQDI 72 >gi|16125153|ref|NP_419717.1| flagellar hook assembly protein FlgD [Caulobacter crescentus CB15] gi|221233883|ref|YP_002516319.1| basal-body rod modification protein FlgD [Caulobacter crescentus NA1000] gi|3493242|gb|AAC33328.1| putative scaffolding protein [Caulobacter crescentus CB15] gi|13422165|gb|AAK22885.1| flagellar hook assembly protein FlgD, putative [Caulobacter crescentus CB15] gi|220963055|gb|ACL94411.1| Basal-body rod modification protein FlgD [Caulobacter crescentus NA1000] Length = 227 Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 3/87 (3%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74 + S++ ++ FL+LL TQ+K+QDP P ++ Q+ + +EQ + N L L+ Sbjct: 18 NNSRTSLATNKETFLQLLTTQLKNQDPLSPTDTTQMTQQITQMTGVEQQLVTNDLLAALV 77 Query: 75 KSNN---LAQASSYIGKNITNADGSIS 98 N L++ + IGK + + + Sbjct: 78 GMNTGTGLSEGVAMIGKQVAAISDTST 104 >gi|325295416|ref|YP_004281930.1| flagellar hook capping protein [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065864|gb|ADY73871.1| flagellar hook capping protein [Desulfurobacterium thermolithotrophum DSM 11699] Length = 219 Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 3/89 (3%) Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 Q + + Q+ FLK+L+ I+ QDP SE + ++E S +Q Sbjct: 19 QVVDANYDNSKMSQEDFLKVLLADIQWQDPLNAKDISEFINNAVKLQELEVLNSFESNIQ 78 Query: 72 EL---LKSNNLAQASSYIGKNITNADGSI 97 L+S +L AS++IGK + Sbjct: 79 TFVSTLQSQSLFFASNFIGKLVEYEGNQT 107 >gi|167567749|ref|ZP_02360665.1| flagellar basal body rod modification protein [Burkholderia oklahomensis EO147] gi|167574700|ref|ZP_02367574.1| flagellar basal body rod modification protein [Burkholderia oklahomensis C6786] Length = 223 Score = 52.2 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 8/79 (10%) Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67 N T + + D F KLL QI++Q+P EPM +S+ V QL + Q + + Sbjct: 20 NKTPAPNANPEGSPA---DLFAKLLDAQIRNQNPLEPMDSSQFVTQLMMMQQTQAMETV- 75 Query: 68 STLQELLKSNNLAQASSYI 86 +L + NLA SS + Sbjct: 76 ----AVLTNQNLATTSSML 90 >gi|320107028|ref|YP_004182618.1| flagellar hook capping protein [Terriglobus saanensis SP1PR4] gi|319925549|gb|ADV82624.1| flagellar hook capping protein [Terriglobus saanensis SP1PR4] Length = 94 Score = 52.2 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 40/70 (57%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69 T + + S T+ D F+ LL+ ++++QDPT P ++ + QL + ++Q + +N+ Sbjct: 21 TSTNPTTATSNDTITSDDFMTLLVAEMQNQDPTAPSDPTQYIQQLVGVNSLQQLIGINTG 80 Query: 70 LQELLKSNNL 79 + EL S ++ Sbjct: 81 IGELTSSLDI 90 >gi|225850268|ref|YP_002730502.1| flagellar hook capping protein FlgD [Persephonella marina EX-H1] gi|225645795|gb|ACO03981.1| flagellar hook capping protein FlgD [Persephonella marina EX-H1] Length = 215 Score = 52.2 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 46/110 (41%), Gaps = 8/110 (7%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS---VQMNSTLQELLKS 76 + + FLK+L+ ++ QDP + ++ + +ME + L+E ++ Sbjct: 23 NSKMENEDFLKVLLADLQWQDPLQANDITDFIQNTVKLREMEVLNSFQETVELLKETNEA 82 Query: 77 NNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTG 126 N+L AS IGK + G ++ + ++ DN +I T Sbjct: 83 NSLLYASGLIGKKVVY-----EGNQTFVENGRSSVSFRLDDNADIVTVTV 127 >gi|283834456|ref|ZP_06354197.1| basal-body rod modification protein FlgD [Citrobacter youngae ATCC 29220] gi|291070003|gb|EFE08112.1| basal-body rod modification protein FlgD [Citrobacter youngae ATCC 29220] Length = 295 Score = 52.2 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 3/68 (4%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82 D FL L + +I++QDPT+P + + QL+ +Q+ +M+ +T L+ + + Sbjct: 70 DTFLTLFVAEIENQDPTDPTDPTAYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMAL 129 Query: 83 SSYIGKNI 90 + +G +I Sbjct: 130 GNMVGDDI 137 >gi|322432990|ref|YP_004210239.1| flagellar hook capping protein [Acidobacterium sp. MP5ACTX9] gi|321165217|gb|ADW70921.1| flagellar hook capping protein [Acidobacterium sp. MP5ACTX9] Length = 162 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 38/75 (50%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69 T + + FL LL+ ++++QDPT PM ++ V Q+ +Q++Q + +N T Sbjct: 36 TTSSTTSDGLTGSTAGTTFLNLLVKELQNQDPTAPMDSTAMVGQMISLNQLDQLISINQT 95 Query: 70 LQELLKSNNLAQASS 84 L + + AS+ Sbjct: 96 LGGSSSTATASVASA 110 >gi|126443508|ref|YP_001061245.1| flagellar basal body rod modification protein [Burkholderia pseudomallei 668] gi|134280664|ref|ZP_01767374.1| basal-body rod modification protein FlgD, putative [Burkholderia pseudomallei 305] gi|167725929|ref|ZP_02409165.1| flagellar basal body rod modification protein [Burkholderia pseudomallei DM98] gi|167905089|ref|ZP_02492294.1| flagellar basal body rod modification protein [Burkholderia pseudomallei NCTC 13177] gi|254299687|ref|ZP_04967136.1| LfgD [Burkholderia pseudomallei 406e] gi|126222999|gb|ABN86504.1| flagellar hook capping protein [Burkholderia pseudomallei 668] gi|134247686|gb|EBA47770.1| basal-body rod modification protein FlgD, putative [Burkholderia pseudomallei 305] gi|157809654|gb|EDO86824.1| LfgD [Burkholderia pseudomallei 406e] Length = 241 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 9/121 (7%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS---VQMN 67 Q S + D F KLL QI++Q+P EPM AS+ V Q+ + Q E + Sbjct: 29 QHTPSPYANGANSPTDLFAKLLAAQIQNQNPLEPMDASQFVTQIMMGQQTEALGVVANLT 88 Query: 68 STLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGI 127 L++S + S +G + S+ T I +DN E +T + Sbjct: 89 QNSAALMESMLVVSLGSQVGTQVMVRTDSLE------LKDDTRDARIVLDNAESDVTVVL 142 Query: 128 R 128 Sbjct: 143 T 143 >gi|125657217|gb|ABN48705.1| flagellar hook capping protein [Burkholderia pseudomallei] Length = 231 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 9/121 (7%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS---VQMN 67 Q S + D F KLL QI++Q+P EPM AS+ V Q+ + Q E + Sbjct: 19 QHTPSPYANGANSPTDLFAKLLAAQIQNQNPLEPMDASQFVTQIMMGQQTEALGVVANLT 78 Query: 68 STLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGI 127 L++S + S +G + S+ T I +DN E +T + Sbjct: 79 QNSAALMESMLVVSLGSQVGTQVMVRTDSLE------LKDDTRDARIVLDNAESDVTVVL 132 Query: 128 R 128 Sbjct: 133 T 133 >gi|225849152|ref|YP_002729316.1| flagellar hook capping protein FlgD [Sulfurihydrogenibium azorense Az-Fu1] gi|225644122|gb|ACN99172.1| putative flagellar hook capping protein FlgD [Sulfurihydrogenibium azorense Az-Fu1] Length = 219 Score = 51.1 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 38/97 (39%), Gaps = 5/97 (5%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQ---VAQLAVFSQM 60 +T + + + FLK+L+T ++ QDP S+ +L + Sbjct: 11 DTVNTGKPKVVDANYDNSKISNSDFLKILLTDLQWQDPLNAKDISDFLDNTVKLRQMESL 70 Query: 61 EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSI 97 + ++ L + +N++ ASS IGK + Sbjct: 71 DSFQKLADALSKF--TNSILTASSLIGKKVKYEGNQT 105 >gi|39934379|ref|NP_946655.1| flagellar hook capping protein [Rhodopseudomonas palustris CGA009] gi|192289902|ref|YP_001990507.1| flagellar hook capping protein [Rhodopseudomonas palustris TIE-1] gi|39648228|emb|CAE26747.1| possible flagellar basal-body rod modification protein FlgD [Rhodopseudomonas palustris CGA009] gi|192283651|gb|ACF00032.1| flagellar hook capping protein [Rhodopseudomonas palustris TIE-1] Length = 237 Score = 51.1 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 3/64 (4%) Query: 37 KHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN---NLAQASSYIGKNITNA 93 K+Q+PT+P+ ++ QL F+ +EQ ++ N +L L++ QA S +G N Sbjct: 50 KNQNPTDPLDTNQFTQQLVQFAGIEQQLKTNDSLSSLVQLQTTAQATQAMSLVGANAIVD 109 Query: 94 DGSI 97 + Sbjct: 110 GSKV 113 >gi|289809013|ref|ZP_06539642.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 43 Score = 51.1 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 17/42 (40%), Positives = 28/42 (66%) Query: 27 AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 +FL LL+ Q+K+QDPT P++ +E QLA S + ++N+ Sbjct: 2 SFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGIEKLNT 43 >gi|153840218|ref|ZP_01992885.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus AQ3810] gi|149746114|gb|EDM57244.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus AQ3810] Length = 59 Score = 51.1 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 3/59 (5%) Query: 31 LLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE---LLKSNNLAQASSYI 86 L++ QI++QDP P+ +E V QLA FSQ++ + M+ +Q LL + + + + Sbjct: 1 LMVAQIQNQDPLNPLDGTEYVGQLAQFSQVQSTENMSKVMQNSMVLLDNMQVLSTAGLV 59 >gi|167576661|ref|ZP_02369535.1| flagellar basal body rod modification protein [Burkholderia thailandensis TXDOH] Length = 241 Score = 51.1 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 3/83 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS---VQMN 67 Q+ S S + D F KLL QI++Q+P EPM AS+ V Q+ + Q E + Sbjct: 29 QRVPSPSPNGANSPTDLFAKLLAAQIQNQNPLEPMDASQFVTQIMMGQQTEALGVVANLT 88 Query: 68 STLQELLKSNNLAQASSYIGKNI 90 L++S + S +G + Sbjct: 89 QNSAALMQSMFVVSLGSQVGAQV 111 >gi|146341768|ref|YP_001206816.1| putative basal-body rod modification protein flgD [Bradyrhizobium sp. ORS278] gi|146194574|emb|CAL78599.1| putative basal-body rod modification protein flgD [Bradyrhizobium sp. ORS278] Length = 218 Score = 50.3 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 36/73 (49%), Gaps = 3/73 (4%) Query: 27 AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL---AQAS 83 FL+LL++++++QDP ++ V Q+ ++ +N+++ L S + + Sbjct: 28 DFLQLLVSELQNQDPLNATSVTDFVNQMTSYANYTSQQSLNTSMNSLASSFSSLVTLNSV 87 Query: 84 SYIGKNITNADGS 96 +YIG + + Sbjct: 88 NYIGHTVEAKSDT 100 >gi|167614836|ref|ZP_02383471.1| flagellar basal body rod modification protein [Burkholderia thailandensis Bt4] gi|257141421|ref|ZP_05589683.1| flagellar basal body rod modification protein [Burkholderia thailandensis E264] Length = 241 Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 3/83 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS---VQMN 67 Q+ S + D F KLL QI++Q+P EPM AS+ V Q+ + Q E + Sbjct: 29 QRMPSPYSNGANSPTDLFAKLLAAQIQNQNPLEPMDASQFVTQIMMGQQTEALGVVANLT 88 Query: 68 STLQELLKSNNLAQASSYIGKNI 90 L++S + S +G + Sbjct: 89 QNSAALMESMLVVSLGSQVGTQV 111 >gi|148254599|ref|YP_001239184.1| putative basal-body rod modification protein flgD [Bradyrhizobium sp. BTAi1] gi|146406772|gb|ABQ35278.1| putative basal-body rod modification protein flgD [Bradyrhizobium sp. BTAi1] Length = 221 Score = 49.5 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 36/73 (49%), Gaps = 3/73 (4%) Query: 27 AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL---AQAS 83 FL+LL++++++QDP ++ V Q+ ++ +N+++ L S + + Sbjct: 31 DFLQLLVSELQNQDPLNATSVTDFVNQMTSYANYTSQQSLNTSMNSLASSFSSLVTLNSV 90 Query: 84 SYIGKNITNADGS 96 +YIG + + Sbjct: 91 NYIGHTVEAKTDT 103 >gi|94968674|ref|YP_590722.1| putative basal-body rod modification protein FlgD [Candidatus Koribacter versatilis Ellin345] gi|94550724|gb|ABF40648.1| putative basal-body rod modification protein FlgD [Candidatus Koribacter versatilis Ellin345] Length = 92 Score = 49.5 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 2/87 (2%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQ--DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58 M I + S +G F +LL+ Q+K QDPT PM S+ V+QL + Sbjct: 1 MNITGPAVGQATNAATSGPVSGMGDLDTTFAQLLVAQLKSQDPTSPMDPSQLVSQLVGLN 60 Query: 59 QMEQSVQMNSTLQELLKSNNLAQASSY 85 ++ + L L + A+ Y Sbjct: 61 TLDAVTSIYQLLAGLATIPTSSAANHY 87 >gi|83716169|ref|YP_438388.1| flagellar basal body rod modification protein [Burkholderia thailandensis E264] gi|83649994|gb|ABC34058.1| basal-body rod modification protein FlgD, putative [Burkholderia thailandensis E264] Length = 231 Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 3/83 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS---VQMN 67 Q+ S + D F KLL QI++Q+P EPM AS+ V Q+ + Q E + Sbjct: 19 QRMPSPYSNGANSPTDLFAKLLAAQIQNQNPLEPMDASQFVTQIMMGQQTEALGVVANLT 78 Query: 68 STLQELLKSNNLAQASSYIGKNI 90 L++S + S +G + Sbjct: 79 QNSAALMESMLVVSLGSQVGTQV 101 >gi|299131956|ref|ZP_07025151.1| flagellar hook capping protein [Afipia sp. 1NLS2] gi|298592093|gb|EFI52293.1| flagellar hook capping protein [Afipia sp. 1NLS2] Length = 245 Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 3/61 (4%) Query: 41 PTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN---NLAQASSYIGKNITNADGSI 97 P +P+ ++ AQL F+Q+EQ ++ N L L+ QA S++G+ I+ + Sbjct: 57 PLDPLDTNQFTAQLVQFAQVEQQLKANDQLSSLVALQKTAQSTQALSFVGQTISVDGSTA 116 Query: 98 S 98 + Sbjct: 117 A 117 >gi|115522803|ref|YP_779714.1| flagellar hook capping protein [Rhodopseudomonas palustris BisA53] gi|115516750|gb|ABJ04734.1| flagellar hook capping protein [Rhodopseudomonas palustris BisA53] Length = 221 Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 3/75 (4%) Query: 27 AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV---QMNSTLQELLKSNNLAQAS 83 FL LL+ ++++Q+P +P ++ +QL ++ EQ S+L S +S Sbjct: 31 DFLTLLVAELQNQNPLDPTSTTDFTSQLMSYASFEQQTALNSNLSSLSTSFNSLLTLNSS 90 Query: 84 SYIGKNITNADGSIS 98 +YIG+ +T S + Sbjct: 91 NYIGQTVTAKADSAT 105 >gi|323171062|gb|EFZ56711.1| flagellar hook capping family protein [Escherichia coli LT-68] Length = 234 Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 37/65 (56%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSY 85 DAFL L + +I++QDPT+ + +Q++ +A + ME+ +T L+ + + + Sbjct: 37 DAFLTLFVAEIQNQDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMALGNL 96 Query: 86 IGKNI 90 +G +I Sbjct: 97 VGDDI 101 >gi|316935454|ref|YP_004110436.1| flagellar hook capping protein [Rhodopseudomonas palustris DX-1] gi|315603168|gb|ADU45703.1| flagellar hook capping protein [Rhodopseudomonas palustris DX-1] Length = 239 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 3/54 (5%) Query: 37 KHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN---NLAQASSYIG 87 K+Q+P +P+ ++ QL F+ +EQ ++ N +L L++ QA ++IG Sbjct: 50 KNQNPMDPLDTNQFTQQLVQFAGIEQQLKSNESLSSLVELQTTAQATQALNFIG 103 >gi|15606897|ref|NP_214278.1| flagellar hook assembly protein [Aquifex aeolicus VF5] gi|2984144|gb|AAC07679.1| flagellar hook assembly protein [Aquifex aeolicus VF5] Length = 209 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 34/75 (45%), Gaps = 3/75 (4%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---L 74 +S + + FLK+ + +++QDP S+ + + +Q++ +M L+ L + Sbjct: 21 QSVDNMSANDFLKIYLETLRYQDPFNQTDISKSLDDMVKINQIKYFTEMKQFLESLKAWM 80 Query: 75 KSNNLAQASSYIGKN 89 ++ IGK Sbjct: 81 NQMTFLNTATLIGKE 95 >gi|59889779|emb|CAH19135.1| Lateral flagellar rod protein (FlgD-like) [Escherichia coli] gi|284920043|emb|CBG33100.1| lateral flagellar rod protein (FlgD-like) [Escherichia coli 042] Length = 234 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 36/65 (55%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSY 85 D FL L + +I++QDPT+ + +Q++ +A + ME+ +T L+ + + + Sbjct: 37 DTFLTLFVAEIQNQDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMALGNL 96 Query: 86 IGKNI 90 +G +I Sbjct: 97 VGDDI 101 >gi|91978425|ref|YP_571084.1| flagellar hook capping protein [Rhodopseudomonas palustris BisB5] gi|91684881|gb|ABE41183.1| flagellar hook capping protein [Rhodopseudomonas palustris BisB5] Length = 242 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 12/94 (12%) Query: 41 PTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN---NLAQASSYIGKNITNADGSI 97 P +P+ ++ QL F+ +EQ ++ N +L LLK QA ++IG N Sbjct: 53 PLDPLDTNQFTQQLVQFAGVEQQLKTNDSLSSLLKLQTTAQTTQAMNFIGANA------- 105 Query: 98 SGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 VV+ + G TA +T+ P++ + I N Sbjct: 106 --VVDGSKSHFDGKTAGWSLSTDKPVSAQVSIQN 137 >gi|260774937|ref|ZP_05883838.1| flagellar basal-body rod modification protein FlgD [Vibrio coralliilyticus ATCC BAA-450] gi|260609192|gb|EEX35350.1| flagellar basal-body rod modification protein FlgD [Vibrio coralliilyticus ATCC BAA-450] Length = 173 Score = 48.4 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 11/76 (14%) Query: 50 QVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQASSYIGKN--------ITNADGSIS 98 +AQ+A F+ ++ +MN+ + L + SN QASS +G++ + DGS++ Sbjct: 1 MIAQMASFATVDGIGKMNNQFETLNASMTSNQALQASSLVGRDVLVPGAAGVKADDGSMA 60 Query: 99 GVVNAIQVSSTGLTAI 114 +V Q + + Sbjct: 61 AMVKLPQSVDNLMVRV 76 >gi|86751225|ref|YP_487721.1| flagellar hook capping protein [Rhodopseudomonas palustris HaA2] gi|86574253|gb|ABD08810.1| Flagellar hook capping protein [Rhodopseudomonas palustris HaA2] Length = 233 Score = 48.4 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 12/92 (13%) Query: 41 PTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN---NLAQASSYIGKNITNADGSI 97 P EP+ ++ QL F+ +EQ ++ N TL LLK QA ++IG Sbjct: 51 PLEPLDTNQFTQQLVQFAGVEQQLKTNETLSSLLKMQSTAQTTQAMNFIG---------A 101 Query: 98 SGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129 + VV+ + G TA +T+ P+T + + Sbjct: 102 TAVVDGSKSHYDGKTAGWTLSTDKPVTAQVSV 133 >gi|148253401|ref|YP_001237986.1| putative flagellar basal-body rod modification protein FlgD [Bradyrhizobium sp. BTAi1] gi|146405574|gb|ABQ34080.1| putative flagellar basal-body rod modification protein FlgD [Bradyrhizobium sp. BTAi1] Length = 230 Score = 47.6 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 3/60 (5%) Query: 41 PTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNLAQASSYIGKNITNADGSI 97 P +P+ ++ QL F+ +EQ ++ N L L+ ++ QA +++GK + Sbjct: 55 PLDPLDTNQFTQQLVQFAGVEQQLKTNDQLGSLISMQQTTQATQALAFVGKTAVVNGSTT 114 >gi|333004884|gb|EGK24404.1| basal-body rod modification protein flgD [Shigella flexneri VA-6] Length = 180 Score = 45.7 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 3/56 (5%) Query: 45 MKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 M+ +E +QLA S + ++N+TL + + ++ QAS+ IG + ++ Sbjct: 1 MENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQASNLIGHGVMIPGTTV 56 >gi|163781857|ref|ZP_02176857.1| flagellar hook assembly protein [Hydrogenivirga sp. 128-5-R1-1] gi|159883077|gb|EDP76581.1| flagellar hook assembly protein [Hydrogenivirga sp. 128-5-R1-1] Length = 210 Score = 44.2 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 41/112 (36%), Gaps = 19/112 (16%) Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN-- 78 + + F+K+ + +K QDP + S+ + + +Q++ M + + N Sbjct: 25 DNMSANEFMKIYLETLKFQDPFKQQDLSKSLEDVVKLNQVKFYTDMKGFMDNFVAWMNQV 84 Query: 79 -LAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129 Q + IGK A ++ TV E I +G R+ Sbjct: 85 TFMQTINLIGKEFVFASDTLD----------------TVKGGEYYILSGERV 120 >gi|331666545|ref|ZP_08367419.1| basal-body rod modification protein FlgD [Escherichia coli TA271] gi|331065769|gb|EGI37653.1| basal-body rod modification protein FlgD [Escherichia coli TA271] Length = 195 Score = 43.8 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 3/57 (5%) Query: 37 KHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQASSYIGKNI 90 K+QDPT+P A+E + QL+ +Q+ +M+ +T L+ + + + +G +I Sbjct: 6 KNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMALGNLVGDDI 62 >gi|218461407|ref|ZP_03501498.1| flagellar basal body rod modification protein [Rhizobium etli Kim 5] Length = 58 Score = 42.6 bits (99), Expect = 0.019, Method: Composition-based stats. Identities = 14/40 (35%), Positives = 26/40 (65%) Query: 92 NADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 +ADG++ G V +++V S G+ A T D +I + GI +++ Sbjct: 4 SADGTVKGTVESVKVYSDGIIATTTDGGKILVQAGITVAD 43 >gi|289548123|ref|YP_003473111.1| flagellar hook capping protein [Thermocrinis albus DSM 14484] gi|289181740|gb|ADC88984.1| flagellar hook capping protein [Thermocrinis albus DSM 14484] Length = 203 Score = 42.2 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 19/118 (16%), Positives = 45/118 (38%), Gaps = 13/118 (11%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM---EQSVQMNSTLQEL 73 ++ L FLK+ + ++ QDP + S+ + + +Q+ L++L Sbjct: 15 TQGVDNLSPQDFLKIYLETLRFQDPFQQQDLSKMLDDMVKLNQVKFFNDVRNTLENLKDL 74 Query: 74 LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 LA S + + + V++ + G T + + +I ++ +N Sbjct: 75 TLQMTLAAGLSVLNREV---------YVSSEDIIPNGATYYLMSDRDIK-GAVVQFTN 122 >gi|75674799|ref|YP_317220.1| flagellar hook capping protein [Nitrobacter winogradskyi Nb-255] gi|74419669|gb|ABA03868.1| Flagellar hook capping protein [Nitrobacter winogradskyi Nb-255] Length = 230 Score = 41.5 bits (96), Expect = 0.039, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 8/62 (12%) Query: 41 PTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNLAQASSYIGKNITNADGSI 97 P +P+ ++ QL F+ +EQ ++ N L L+ ++ QA ++GKN I Sbjct: 55 PLDPLDTNQFTQQLVQFAGVEQQLKTNDQLSNLVSLQQTTQATQALDFVGKN-----AVI 109 Query: 98 SG 99 G Sbjct: 110 DG 111 >gi|162147458|ref|YP_001601919.1| basal-body rod modification protein flgD [Gluconacetobacter diazotrophicus PAl 5] gi|209545567|ref|YP_002277796.1| flagellar hook capping protein [Gluconacetobacter diazotrophicus PAl 5] gi|161786035|emb|CAP55617.1| putative basal-body rod modification protein flgD [Gluconacetobacter diazotrophicus PAl 5] gi|209533244|gb|ACI53181.1| flagellar hook capping protein [Gluconacetobacter diazotrophicus PAl 5] Length = 258 Score = 41.5 bits (96), Expect = 0.044, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 3/64 (4%) Query: 37 KHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN---NLAQASSYIGKNITNA 93 ++QDP+ PM + +LA F+ +EQ VQ N+ L L+ N L +S +GK T Sbjct: 64 QNQDPSSPMSSDTFTQELAQFAGVEQQVQTNTNLSTLISLNEESQLNSDASLVGKTATAD 123 Query: 94 DGSI 97 ++ Sbjct: 124 STTL 127 >gi|77164896|ref|YP_343421.1| PAS sensor signal transduction histidine kinase [Nitrosococcus oceani ATCC 19707] gi|254434009|ref|ZP_05047517.1| PAS fold family [Nitrosococcus oceani AFC27] gi|76883210|gb|ABA57891.1| PAS/PAC sensor hybrid histidine kinase [Nitrosococcus oceani ATCC 19707] gi|207090342|gb|EDZ67613.1| PAS fold family [Nitrosococcus oceani AFC27] Length = 938 Score = 40.7 bits (94), Expect = 0.064, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 12/92 (13%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQV---------AQLAVFSQME-QSVQMNSTLQELL 74 +D FL L ++++ P PM+ + V AQ +E Q Q+ + +L+ Sbjct: 575 KDEFLATLTHELRN--PLAPMRNALYVIKSNSANAEAQTHAHELIERQISQIVRLIDDLM 632 Query: 75 KSNNLAQASSYIGKNITNADGSISGVVNAIQV 106 + + + I K+I + +I+ V +Q+ Sbjct: 633 DVSRITRGKIRISKDIVDIQKAITDAVETVQL 664 >gi|209884349|ref|YP_002288206.1| flagellar hook capping protein [Oligotropha carboxidovorans OM5] gi|209872545|gb|ACI92341.1| flagellar hook capping protein [Oligotropha carboxidovorans OM5] Length = 239 Score = 40.7 bits (94), Expect = 0.071, Method: Composition-based stats. Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 7/99 (7%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDA----FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 T Q + +KS + G FL LL TQ+++Q+P +P+ ++ QL F+Q+ Sbjct: 12 TSAGAAAQNNTSTKSSSSTGIADNFQTFLTLLTTQLQNQNPLDPLDTNQFTQQLVQFAQV 71 Query: 61 EQSVQMNSTLQELLKSN---NLAQASSYIGKNITNADGS 96 EQ ++ N L L+ QA ++G+ I+ + Sbjct: 72 EQQLKANDQLSALVALQKTAQSTQALGFVGQTISVDGST 110 >gi|85713553|ref|ZP_01044543.1| Flagellar hook capping protein [Nitrobacter sp. Nb-311A] gi|85699457|gb|EAQ37324.1| Flagellar hook capping protein [Nitrobacter sp. Nb-311A] Length = 230 Score = 39.9 bits (92), Expect = 0.12, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 5/100 (5%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQD--AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 T + + + + TL + FL LL TQ+++Q+P +P+ ++ QL F+ +E Sbjct: 16 TTALPASSPGSAATSDNNTLAGNFQTFLTLLTTQLQNQNPLDPLDTNQFTQQLVQFAGVE 75 Query: 62 QSVQMNSTLQELLKSNNLAQASS---YIGKNITNADGSIS 98 Q ++ N L L+ AQA+ ++GKN + + Sbjct: 76 QQLRTNDQLSNLVSMQQTAQATQALDFVGKNAVVDGSTAT 115 >gi|115523065|ref|YP_779976.1| flagellar hook capping protein [Rhodopseudomonas palustris BisA53] gi|115517012|gb|ABJ04996.1| flagellar hook capping protein [Rhodopseudomonas palustris BisA53] Length = 243 Score = 39.5 bits (91), Expect = 0.16, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 4/99 (4%) Query: 4 NTEVNPTQQEFSKSKSKKTLG-QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 N + S K+ FL LL TQ+++Q+P +P+ ++ QL F+ +EQ Sbjct: 16 NPNYSANSSSSSSGKTSGIADNFQTFLTLLTTQLQNQNPLDPLDTNQFTQQLVQFAGVEQ 75 Query: 63 SVQMNSTLQELLKSN---NLAQASSYIGKNITNADGSIS 98 ++ NS L+ L+K QA +++G + Sbjct: 76 QLKSNSQLEALVKLQTGAQATQALNFVGATAIVDGATTK 114 >gi|163749771|ref|ZP_02157017.1| putative transporter [Shewanella benthica KT99] gi|161330584|gb|EDQ01542.1| putative transporter [Shewanella benthica KT99] Length = 576 Score = 39.5 bits (91), Expect = 0.16, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 9/84 (10%) Query: 46 KASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQ 105 ++ + QL+ FS +E + N L L L Q S IGK + + Sbjct: 267 DITKMM-QLSQFSGLEMFAEKNGLLDSNLTEVVLKQESVLIGKTLKGSGFRA-------- 317 Query: 106 VSSTGLTAITVDNTEIPITTGIRI 129 + + AI D EI G + Sbjct: 318 LFDAAVVAIRRDGEEISGKLGEVV 341 >gi|157376094|ref|YP_001474694.1| TrkA domain-containing protein [Shewanella sediminis HAW-EB3] gi|157318468|gb|ABV37566.1| TrkA-C domain protein [Shewanella sediminis HAW-EB3] Length = 575 Score = 39.5 bits (91), Expect = 0.17, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 9/84 (10%) Query: 46 KASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQ 105 ++ + QL+ FS +E + N L L + Q S IGK + A Sbjct: 267 DITKMM-QLSQFSGLEMFAEKNGLLDSNLTEVVVKQESVLIGKTLKGAGFRA-------- 317 Query: 106 VSSTGLTAITVDNTEIPITTGIRI 129 + + AI D E+ G + Sbjct: 318 LFDAAVVAIRRDGEEVSGKLGEVV 341 >gi|260591545|ref|ZP_05857003.1| putative membrane protein [Prevotella veroralis F0319] gi|260536576|gb|EEX19193.1| putative membrane protein [Prevotella veroralis F0319] Length = 149 Score = 38.8 bits (89), Expect = 0.25, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 23/53 (43%) Query: 77 NNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129 L+ A + IG+ D +G +++ A ++D EI + +RI Sbjct: 84 QRLSNADALIGREGKVTDTIETGGYGRVKIDGDSWKAKSIDGQEISVGNDVRI 136 >gi|90422504|ref|YP_530874.1| flagellar hook capping protein [Rhodopseudomonas palustris BisB18] gi|90104518|gb|ABD86555.1| flagellar hook capping protein [Rhodopseudomonas palustris BisB18] Length = 237 Score = 38.4 bits (88), Expect = 0.39, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 55/125 (44%), Gaps = 5/125 (4%) Query: 9 PTQQEFSKSKSKKTLG-QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67 P+ + K+ FL LL TQ+++Q+P +P+ ++ QL F+ +EQ ++ N Sbjct: 20 PSDTSTTTGKTTGIADNFQTFLTLLTTQLQNQNPLDPLDTNQFTQQLVQFAGVEQQLKSN 79 Query: 68 STLQELLKSN---NLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPIT 124 S L+ L+K QA +++G DG + + + + + I Sbjct: 80 SQLESLVKLQTGAQATQALNFVGATAVV-DGKTTELTKGVAAWGINVPKSSTVTVNITNA 138 Query: 125 TGIRI 129 TG + Sbjct: 139 TGQTV 143 >gi|157376121|ref|YP_001474721.1| TrkA domain-containing protein [Shewanella sediminis HAW-EB3] gi|157318495|gb|ABV37593.1| TrkA-C domain protein [Shewanella sediminis HAW-EB3] Length = 575 Score = 37.6 bits (86), Expect = 0.59, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 5/78 (6%) Query: 51 VAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNAD--GSISGVVNAIQVSS 108 V QL+ FS +E + N L L + Q S IGK + A G V AI+ Sbjct: 271 VMQLSQFSGLEMFAEKNGLLDSNLTEVVVRQESILIGKTLKGAGFRALFDGAVVAIRRDG 330 Query: 109 TGLTAITVDNTEIPITTG 126 ++ E+ + G Sbjct: 331 EDISGKL---GEVVLKAG 345 >gi|206895859|ref|YP_002246689.1| basal-body rod modification protein FlgD [Coprothermobacter proteolyticus DSM 5265] gi|206738476|gb|ACI17554.1| basal-body rod modification protein FlgD [Coprothermobacter proteolyticus DSM 5265] Length = 97 Score = 37.2 bits (85), Expect = 0.68, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 2/92 (2%) Query: 7 VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66 + +Q + L +D FLKLL+ ++K QDP PM + Q+ + + +++ +++ Sbjct: 6 TSSSQGATGSEQKVPGLNRDDFLKLLLAELKAQDPLSPMDTNTMTTQITLLNVLQELIEI 65 Query: 67 NSTLQELL--KSNNLAQASSYIGKNITNADGS 96 + LQ L+ KS ++S+ G DGS Sbjct: 66 KTMLQNLVSAKSQEGTESSTTDGAEEVAGDGS 97 >gi|92116311|ref|YP_576040.1| flagellar hook capping protein [Nitrobacter hamburgensis X14] gi|91799205|gb|ABE61580.1| flagellar hook capping protein [Nitrobacter hamburgensis X14] Length = 230 Score = 36.8 bits (84), Expect = 0.96, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 11/65 (16%) Query: 41 PTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS-------NNLAQASSYIGKNITNA 93 P +P+ ++ QL F+ +EQ ++ N L S QA ++GKN Sbjct: 55 PLDPLDTNQFTQQLVQFAGVEQQLKTNDQL----TSLVSLQQTAQATQALDFVGKNAVVD 110 Query: 94 DGSIS 98 + + Sbjct: 111 GSTAT 115 >gi|205373383|ref|ZP_03226187.1| hypothetical protein Bcoam_08725 [Bacillus coahuilensis m4-4] Length = 114 Score = 36.4 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 41/88 (46%), Gaps = 6/88 (6%) Query: 49 EQVAQLAVFSQMEQSVQMNSTLQELLK---SNNLAQASSYIGKNITN---ADGSISGVVN 102 + + F+ + ++ + + EL N+L +AS+ IGK++T + +S +V+ Sbjct: 27 KFTGETVEFTLEDGTILLPENISELKSPQVGNSLVEASNLIGKSVTWLGENEEQLSSIVS 86 Query: 103 AIQVSSTGLTAITVDNTEIPITTGIRIS 130 ++ + T D+ +I + + I Sbjct: 87 SVSQKDGEIYIHTKDSQKIKASDLVTIE 114 >gi|42567541|ref|NP_195692.2| binding [Arabidopsis thaliana] gi|53749172|gb|AAU90071.1| At4g39820 [Arabidopsis thaliana] gi|332661723|gb|AEE87123.1| tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] Length = 408 Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 49/111 (44%), Gaps = 11/111 (9%) Query: 32 LITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNLA---QASSY 85 L+ ++ ++DP +P+ S+ + F +E + ++++L KSN L Q ++ Sbjct: 236 LMKELINRDPLDPVLISKLGSVQMQFGDVEGAKTTFDRVEKMLNEGKSNGLLNEIQFNNL 295 Query: 86 IGKNITNADGSISGVVNAIQ-----VSSTGLTAITVDNTEIPITTGIRISN 131 +G+N V+A++ + I V+N + + +S+ Sbjct: 296 VGRNKALVYVVAKDYVSAVREYDKCIERDNSDIIAVNNKALCLMYLRDLSD 346 >gi|27754425|gb|AAO22661.1| unknown protein [Arabidopsis thaliana] Length = 412 Score = 36.1 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 49/111 (44%), Gaps = 11/111 (9%) Query: 32 LITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNLA---QASSY 85 L+ ++ ++DP +P+ S+ + F +E + ++++L KSN L Q ++ Sbjct: 240 LMKELINRDPLDPVLISKLGSVQMQFGDVEGAKTTFDRVEKMLNEGKSNGLLNEIQFNNL 299 Query: 86 IGKNITNADGSISGVVNAIQ-----VSSTGLTAITVDNTEIPITTGIRISN 131 +G+N V+A++ + I V+N + + +S+ Sbjct: 300 VGRNKALVYVVAKDYVSAVREYDKCIERDNSDIIAVNNKALCLMYLRDLSD 350 >gi|122011122|sp|Q3LX99|TXLR3_EISFO RecName: Full=Lysenin-related protein 3; Short=LRP-3; AltName: Full=eflr3; Short=efL3 gi|75270469|gb|ABA18726.1| lysenin-related protein 3 [Eisenia fetida] Length = 300 Score = 35.7 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 28/71 (39%) Query: 58 SQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVD 117 + +EQ + M ++ L A+ +G+ + D G V S + +++ Sbjct: 34 TSVEQKITMTKGMKNLNSETKTLTATHTVGRTLKVGDPFEIGSVEVSYSFSHQESQVSMT 93 Query: 118 NTEIPITTGIR 128 TE+ + I Sbjct: 94 QTEVYSSQVIE 104 >gi|226939294|ref|YP_002794365.1| 16S rRNA-processing protein RimM [Laribacter hongkongensis HLHK9] gi|226714218|gb|ACO73356.1| RimM [Laribacter hongkongensis HLHK9] Length = 168 Score = 35.3 bits (80), Expect = 2.6, Method: Composition-based stats. Identities = 8/46 (17%), Positives = 21/46 (45%) Query: 83 SSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128 + IG ++N G+ GVV+++ + + D + + ++ Sbjct: 102 ADLIGMAVSNPAGTAFGVVDSLMQTGANDVLVVRDGKQQTLIPFVK 147 >gi|3080451|emb|CAA18768.1| hypothetical protein [Arabidopsis thaliana] gi|7270966|emb|CAB80645.1| hypothetical protein [Arabidopsis thaliana] Length = 427 Score = 35.3 bits (80), Expect = 2.6, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 49/111 (44%), Gaps = 11/111 (9%) Query: 32 LITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNLA---QASSY 85 L+ ++ ++DP +P+ S+ + F +E + ++++L KSN L Q ++ Sbjct: 255 LMKELINRDPLDPVLISKLGSVQMQFGDVEGAKTTFDRVEKMLNEGKSNGLLNEIQFNNL 314 Query: 86 IGKNITNADGSISGVVNAIQ-----VSSTGLTAITVDNTEIPITTGIRISN 131 +G+N V+A++ + I V+N + + +S+ Sbjct: 315 VGRNKALVYVVAKDYVSAVREYDKCIERDNSDIIAVNNKALCLMYLRDLSD 365 >gi|312374950|gb|EFR22408.1| hypothetical protein AND_15276 [Anopheles darlingi] Length = 906 Score = 35.3 bits (80), Expect = 2.8, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 21/38 (55%), Gaps = 1/38 (2%) Query: 49 EQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYI 86 + + Q+ Q+ Q Q+N + +L + N L+Q S++ Sbjct: 657 QMINQMGQMGQLGQMNQLNQ-MNQLNQMNQLSQMQSHV 693 >gi|170039141|ref|XP_001847404.1| cytochrome P450 [Culex quinquefasciatus] gi|167862754|gb|EDS26137.1| cytochrome P450 [Culex quinquefasciatus] Length = 504 Score = 35.3 bits (80), Expect = 3.0, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 3/71 (4%) Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKH-QDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 + + + K + ++ F+ LLI Q+K+ +DP + E AQ VF + S ++ + Sbjct: 263 HDTVRQREKNNVQRNDFMNLLI-QLKNSEDPDARITMDEMAAQSFVF-FLAGSETSSTAM 320 Query: 71 QELLKSNNLAQ 81 + + Q Sbjct: 321 VNCMYELAMNQ 331 >gi|261885052|ref|ZP_06009091.1| flagellar basal body rod modification protein [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 197 Score = 35.3 bits (80), Expect = 3.2, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 24/47 (51%), Gaps = 3/47 (6%) Query: 45 MKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQASSYIGK 88 M +++ + Q + + +E N +++L ++S+ A S +GK Sbjct: 1 MDSAKMLEQTSQLATLEMQENTNKVMKQLTTQMQSSLSMTAMSALGK 47 >gi|255027495|ref|ZP_05299481.1| flagellar basal body rod modification protein [Listeria monocytogenes FSL J2-003] Length = 77 Score = 34.9 bits (79), Expect = 3.9, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 4/75 (5%) Query: 59 QMEQSVQMNSTLQELLKSNNLAQASSYIGKN---ITNADGSISGVVNAIQVSSTGLTAIT 115 Q+ L E +++ L A ++IGK+ ++ ISG V ++Q ++ G+ Sbjct: 2 QVANMTTAVDKLSEQAQNSALQSAVNFIGKDIKGVSLNGEVISGKVESVQQTTNGVMLKL 61 Query: 116 VDNTE-IPITTGIRI 129 DN +P+T I Sbjct: 62 KDNDSLVPMTYVTEI 76 >gi|255025862|ref|ZP_05297848.1| flagellar basal body rod modification protein [Listeria monocytogenes FSL J2-003] Length = 45 Score = 34.5 bits (78), Expect = 4.5, Method: Composition-based stats. Identities = 13/37 (35%), Positives = 21/37 (56%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDP 41 + + S KTLG+D F+KL +T +++QDP Sbjct: 8 SGASQDTNNAVTSSVSKTLGKDDFMKLFLTSLQYQDP 44 >gi|239621213|ref|ZP_04664244.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239515674|gb|EEQ55541.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 948 Score = 34.5 bits (78), Expect = 4.5, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 33/96 (34%), Gaps = 19/96 (19%) Query: 46 KASEQVAQLA----------------VFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKN 89 ++ +Q+A S + N+ + A S +GK Sbjct: 415 DSTSMASQMASTSSSGMSGTSSITSQQMSMLTGKTDENAAPDSFNEIMPGADDSKLVGKV 474 Query: 90 ITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITT 125 IT+ ++G + S + + DN +P+TT Sbjct: 475 ITDNYQVVNG---SWPKSKDEVVLVLDDNNSVPLTT 507 >gi|152980389|ref|YP_001354675.1| signal recognition particle, subunit SRP54 [Janthinobacterium sp. Marseille] gi|151280466|gb|ABR88876.1| signal recognition particle, subunit SRP54 [Janthinobacterium sp. Marseille] Length = 455 Score = 34.5 bits (78), Expect = 4.7, Method: Composition-based stats. Identities = 12/84 (14%), Positives = 28/84 (33%), Gaps = 4/84 (4%) Query: 46 KASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQ 105 ++ +QLA +M + L L+ K + + G++N++ Sbjct: 334 DLNDFKSQLAQMKKMGGMSNLMDKLPAQLQQAASGANMGMADKQVI----RMEGIINSMT 389 Query: 106 VSSTGLTAITVDNTEIPITTGIRI 129 + + + I TG + Sbjct: 390 PQERAKPELIKASRKRRIATGAGV 413 >gi|193222405|emb|CAL62893.2| Signal recognition particle protein (Fifty-four homolog) [Herminiimonas arsenicoxydans] Length = 455 Score = 34.5 bits (78), Expect = 5.3, Method: Composition-based stats. Identities = 12/84 (14%), Positives = 28/84 (33%), Gaps = 4/84 (4%) Query: 46 KASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQ 105 ++ +QLA +M + L L+ K + + G++N++ Sbjct: 334 DLNDFKSQLAQMKKMGGMSNLMDKLPAQLQQAASGANMGMADKQVV----RMEGIINSMT 389 Query: 106 VSSTGLTAITVDNTEIPITTGIRI 129 + + + I TG + Sbjct: 390 PQERAKPDLIKASRKRRIATGAGV 413 >gi|119509074|ref|ZP_01628225.1| two-component hybrid sensor and regulator [Nodularia spumigena CCY9414] gi|119466240|gb|EAW47126.1| two-component hybrid sensor and regulator [Nodularia spumigena CCY9414] Length = 454 Score = 34.1 bits (77), Expect = 5.9, Method: Composition-based stats. Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 5/34 (14%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58 ++ FL LL Q++ P+ + + Q+ S Sbjct: 280 KNEFLNLLSHQLR-----SPLSNMKMMIQMLQLS 308 >gi|134095939|ref|YP_001101014.1| GTP-binding signal recognition particle protein [Herminiimonas arsenicoxydans] Length = 396 Score = 34.1 bits (77), Expect = 6.4, Method: Composition-based stats. Identities = 12/84 (14%), Positives = 28/84 (33%), Gaps = 4/84 (4%) Query: 46 KASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQ 105 ++ +QLA +M + L L+ K + + G++N++ Sbjct: 275 DLNDFKSQLAQMKKMGGMSNLMDKLPAQLQQAASGANMGMADKQVV----RMEGIINSMT 330 Query: 106 VSSTGLTAITVDNTEIPITTGIRI 129 + + + I TG + Sbjct: 331 PQERAKPDLIKASRKRRIATGAGV 354 >gi|167530871|ref|XP_001748157.1| hypothetical protein [Monosiga brevicollis MX1] gi|163773277|gb|EDQ86918.1| predicted protein [Monosiga brevicollis MX1] Length = 1193 Score = 34.1 bits (77), Expect = 6.4, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 35/77 (45%), Gaps = 2/77 (2%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 T + K+ +D FL + ++ QD P + +++ Q A F + + ++ Sbjct: 464 STGDATRWKQGKRDAEKDRFLGAMFFKLISQDVRCPTDSDKRIDQFADF--VTEMLKTAK 521 Query: 69 TLQELLKSNNLAQASSY 85 ++ K+++ ASS+ Sbjct: 522 RNIDIAKAHSDRMASSF 538 >gi|317482507|ref|ZP_07941523.1| ABC transporter [Bifidobacterium sp. 12_1_47BFAA] gi|316916059|gb|EFV37465.1| ABC transporter [Bifidobacterium sp. 12_1_47BFAA] Length = 948 Score = 34.1 bits (77), Expect = 6.8, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 33/96 (34%), Gaps = 19/96 (19%) Query: 46 KASEQVAQLA----------------VFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKN 89 ++ +Q+A S + N+ + A S +GK Sbjct: 415 DSASMASQMASTSSSGMSGTSSITSQQMSMLTGKTDENAAPDSFNEIMPGADDSKLVGKV 474 Query: 90 ITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITT 125 IT+ ++G + S + + DN +P+TT Sbjct: 475 ITDNYQVVNG---SWPKSKDEVVLVLDDNNSVPLTT 507 >gi|23465931|ref|NP_696534.1| hypothetical protein BL1369 [Bifidobacterium longum NCC2705] gi|227547608|ref|ZP_03977657.1| ABC superfamily ATP binding cassette transporter, ABC protein [Bifidobacterium longum subsp. infantis ATCC 55813] gi|312132536|ref|YP_003999875.1| salx-type abc antimicrobial peptide transport system atpase component [Bifidobacterium longum subsp. longum BBMN68] gi|322689455|ref|YP_004209189.1| hypothetical protein BLIF_1271 [Bifidobacterium longum subsp. infantis 157F] gi|23326641|gb|AAN25170.1| large protein with N-terminal similarity to ATP binding protein of ABC transporter [Bifidobacterium longum NCC2705] gi|227211863|gb|EEI79759.1| ABC superfamily ATP binding cassette transporter, ABC protein [Bifidobacterium longum subsp. infantis ATCC 55813] gi|291516707|emb|CBK70323.1| ABC-type antimicrobial peptide transport system, ATPase component [Bifidobacterium longum subsp. longum F8] gi|311773470|gb|ADQ02958.1| SalX-type ABC antimicrobial peptide transport system ATPase component [Bifidobacterium longum subsp. longum BBMN68] gi|320460791|dbj|BAJ71411.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis 157F] Length = 948 Score = 34.1 bits (77), Expect = 6.9, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 33/96 (34%), Gaps = 19/96 (19%) Query: 46 KASEQVAQLA----------------VFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKN 89 ++ +Q+A S + N+ + A S +GK Sbjct: 415 DSASMASQMASTSSSGMSGTSSITSQQMSMLTGKTDENAAPDSFNEIMPGADDSKLVGKV 474 Query: 90 ITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITT 125 IT+ ++G + S + + DN +P+TT Sbjct: 475 ITDNYQVVNG---SWPKSKDEVVLVLDDNNSVPLTT 507 >gi|315125523|ref|YP_004067526.1| two-component system [Pseudoalteromonas sp. SM9913] gi|315014036|gb|ADT67374.1| probable two-component system [Pseudoalteromonas sp. SM9913] Length = 392 Score = 34.1 bits (77), Expect = 7.3, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 27/62 (43%), Gaps = 6/62 (9%) Query: 29 LKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ------MNSTLQELLKSNNLAQA 82 K ++ Q+K+Q+ + S+ QL + Q+ +N + +L ++ A Sbjct: 286 FKDIVAQLKNQNAMQTNAISQLTEQLEQLQSLMQTQNDLPASQLNEQITQLSHTSQQLVA 345 Query: 83 SS 84 ++ Sbjct: 346 TT 347 >gi|322691423|ref|YP_004220993.1| hypothetical protein BLLJ_1234 [Bifidobacterium longum subsp. longum JCM 1217] gi|320456279|dbj|BAJ66901.1| conserved hypothetical protein [Bifidobacterium longum subsp. longum JCM 1217] Length = 948 Score = 34.1 bits (77), Expect = 7.4, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 33/96 (34%), Gaps = 19/96 (19%) Query: 46 KASEQVAQLA----------------VFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKN 89 ++ +Q+A S + N+ + A S +GK Sbjct: 415 DSASMASQMASTSSSGMSGTSSITSQQMSMLTGKTDENAAPDSFNEIMPGADDSKLVGKV 474 Query: 90 ITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITT 125 IT+ ++G + S + + DN +P+TT Sbjct: 475 ITDNYQVVNG---SWPKSKDEVVLVLDDNNSVPLTT 507 >gi|313837733|gb|EFS75447.1| conserved hypothetical protein [Propionibacterium acnes HL037PA2] gi|314927385|gb|EFS91216.1| conserved hypothetical protein [Propionibacterium acnes HL044PA1] gi|314972671|gb|EFT16768.1| conserved hypothetical protein [Propionibacterium acnes HL037PA3] gi|328907469|gb|EGG27235.1| putative lipoprotein [Propionibacterium sp. P08] Length = 256 Score = 33.8 bits (76), Expect = 7.6, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 51/114 (44%), Gaps = 10/114 (8%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 + +PT + ++K+ K L QD F K + ++ + + S+ AQ+ +++ Sbjct: 45 SVTASPTPTKHKQTKAPKHLSQDDFTKAISSKKINNQTFTILDNSQIAAQMNQVTKVIGQ 104 Query: 64 VQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVD 117 +++ + ++A + DG I+ +V+AI + T +T++ Sbjct: 105 AKISPVECGKILKQSIA----------SVTDGEINNIVSAIGSDQSAPTTVTLN 148 >gi|296283783|ref|ZP_06861781.1| cation antiporter (Na+/Ca2+) [Citromicrobium bathyomarinum JL354] Length = 344 Score = 33.8 bits (76), Expect = 7.7, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%) Query: 64 VQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDN 118 +M + L L +A IG + A SISG+V +I +++G + V N Sbjct: 28 SKMAAIADVLADRTGLGEA--LIGAVLLGAGTSISGIVTSITTAASGAPELAVSN 80 >gi|195953026|ref|YP_002121316.1| flagellar hook assembly protein [Hydrogenobaculum sp. Y04AAS1] gi|195932638|gb|ACG57338.1| flagellar hook assembly protein [Hydrogenobaculum sp. Y04AAS1] Length = 240 Score = 33.8 bits (76), Expect = 9.0, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 43/116 (37%), Gaps = 8/116 (6%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPM--KASEQVA---QLAVFSQMEQSVQMNSTL 70 +S L A++++ T++K+QDP + + QL + Q L Sbjct: 35 TQQSLMNLSASAYMEIYTTELKYQDPASSSGNDVTSMINATVQLQQIGYYSIAQQQTQAL 94 Query: 71 QELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTG 126 + LL + + IGK S SG+ VS ++ N + I G Sbjct: 95 EALLSQMTTLNSINMIGKEFVF---STSGIDTTKNVSYYLDAPTSMSNVSVEIMNG 147 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.309 0.147 0.398 Lambda K H 0.267 0.0449 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,080,411,072 Number of Sequences: 14124377 Number of extensions: 71654611 Number of successful extensions: 235564 Number of sequences better than 10.0: 1309 Number of HSP's better than 10.0 without gapping: 2247 Number of HSP's successfully gapped in prelim test: 206 Number of HSP's that attempted gapping in prelim test: 230815 Number of HSP's gapped (non-prelim): 3162 length of query: 131 length of database: 4,842,793,630 effective HSP length: 96 effective length of query: 35 effective length of database: 3,486,853,438 effective search space: 122039870330 effective search space used: 122039870330 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.5 bits) S2: 76 (33.8 bits)