RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780520|ref|YP_003064933.1| flagellar basal body rod
modification protein [Candidatus Liberibacter asiaticus str. psy62]
(131 letters)
>gnl|CDD|168345 PRK06009, flgD, flagellar basal body rod modification protein;
Reviewed.
Length = 140
Score = 120 bits (303), Expect = 1e-28
Identities = 57/127 (44%), Positives = 85/127 (66%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
T T + + +K ++ D+FL+LLI Q+K+QDPT+PM A++ V+QLA FSQ+EQS
Sbjct: 14 TTSSTSTASNSTSAANKASVNYDSFLQLLIAQMKNQDPTDPMDATQYVSQLATFSQVEQS 73
Query: 64 VQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPI 123
+Q NS L LL S++L QA IG+ +T+ADGSI+GVV ++ V S G+ A D ++ +
Sbjct: 74 IQTNSKLDTLLASSSLTQAEGLIGRTVTSADGSITGVVKSVTVYSDGVIATLEDGKKVLL 133
Query: 124 TTGIRIS 130
G+ IS
Sbjct: 134 GPGVTIS 140
>gnl|CDD|181995 PRK09618, flgD, flagellar basal body rod modification protein;
Provisional.
Length = 142
Score = 88.9 bits (221), Expect = 3e-19
Identities = 40/124 (32%), Positives = 71/124 (57%), Gaps = 5/124 (4%)
Query: 3 INTEVNPTQQEFSKSKSKK-TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
I++ + + ++ ++ LG+D FLKLLITQ+++QDPT PM+ E +AQ+A FS +E
Sbjct: 6 IDSSLWLANSKKAERRTGNQNLGKDDFLKLLITQLQNQDPTNPMEDKEFIAQMAQFSSLE 65
Query: 62 QSVQMNSTLQELLKSNN-LAQASSYIGKNIT---NADGSISGVVNAIQVSSTGLTAITVD 117
Q MN ++++L+ S++ L + S IGK + +SG V +++ + +
Sbjct: 66 QMTNMNKSMEKLVSSSDGLTKYSELIGKEVEWEGEDGEIVSGTVTSVKQKDGDYPLVLDN 125
Query: 118 NTEI 121
T I
Sbjct: 126 GTWI 129
>gnl|CDD|183764 PRK12813, flgD, flagellar basal body rod modification protein;
Reviewed.
Length = 223
Score = 72.1 bits (177), Expect = 4e-14
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
+ + + + + S T + FL++L TQ+++QDP PM +S+ AQLA FS +
Sbjct: 8 VTSPGTTTGSSRGSASAASALTSDFETFLRMLTTQLQNQDPLNPMDSSDYAAQLATFSGV 67
Query: 61 EQSVQMNSTLQELLKS---NNLAQASSYIGK 88
EQ V+ N L L S L+Q + +IG+
Sbjct: 68 EQQVKTNDLLTGLGASLGVMGLSQLAGWIGR 98
>gnl|CDD|180647 PRK06655, flgD, flagellar basal body rod modification protein;
Reviewed.
Length = 225
Score = 70.0 bits (172), Expect = 2e-13
Identities = 32/79 (40%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL- 73
S SK QD FL LL+ Q+K+QDP PM S+ +QLA FS + ++N+TL L
Sbjct: 22 SSSKKGAADLQDDFLTLLVAQLKNQDPLNPMDNSQMTSQLAQFSTVSGIEKLNTTLGSLS 81
Query: 74 --LKSNNLAQASSYIGKNI 90
+ S+ QASS +G+ +
Sbjct: 82 SQMTSSQALQASSLVGRGV 100
>gnl|CDD|183639 PRK12634, flgD, flagellar basal body rod modification protein;
Reviewed.
Length = 221
Score = 54.6 bits (131), Expect = 7e-09
Identities = 32/98 (32%), Positives = 55/98 (56%), Gaps = 11/98 (11%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST---LQEL 73
+K ++ LGQ FLKL+ Q++HQDP +PM+ S + QLA FS ++ +N+ +
Sbjct: 21 AKKEEALGQADFLKLMTEQLQHQDPLKPMENSAFLGQLAQFSTVQGIGDLNTKVSNFSDS 80
Query: 74 LKSNNLAQASSYIGKNI--------TNADGSISGVVNA 103
+ S+ + + ++ +G N+ +A GS GVV A
Sbjct: 81 MSSDQVLKGAALVGHNVLVPSAQVAIDATGSAKGVVAA 118
>gnl|CDD|139245 PRK12812, flgD, flagellar basal body rod modification protein;
Reviewed.
Length = 259
Score = 53.7 bits (129), Expect = 2e-08
Identities = 28/80 (35%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNN 78
L +DAFLKLL+ +++HQDPT+PM + + + Q + + +E N+T+Q+L ++S+
Sbjct: 43 QLDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLAALEMQENTNTTMQKLVEQMQSSM 102
Query: 79 LAQASSYIGKNITNADGSIS 98
A S +GK T +D ++
Sbjct: 103 STSALSALGKMATVSDNAVK 122
>gnl|CDD|138812 PRK11911, flgD, flagellar basal body rod modification protein;
Provisional.
Length = 140
Score = 51.8 bits (123), Expect = 6e-08
Identities = 38/111 (34%), Positives = 64/111 (57%), Gaps = 6/111 (5%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST---LQEL 73
S KTLG+D F+KL +T +++QDP+ P+ +E ++Q+A S MEQ M + L E
Sbjct: 20 SSVSKTLGKDDFMKLFLTSLQYQDPSSPLDTNEMMSQMAQLSLMEQVANMTTAVDKLSEQ 79
Query: 74 LKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEI 121
+++ L A ++IGK+I + ISG V ++Q ++ G+ DN +
Sbjct: 80 AQNSALQSAVNFIGKDIKGVSLNGEVISGKVESVQQTTNGVMLKLKDNDSL 130
>gnl|CDD|183638 PRK12633, flgD, flagellar basal body rod modification protein;
Provisional.
Length = 230
Score = 48.4 bits (115), Expect = 5e-07
Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ--- 81
QD FL LL+TQ+++QDP PM+ +E +QLA S +E + +T+ + +++Q
Sbjct: 28 QDQFLTLLVTQLRNQDPLNPMENAELTSQLAQISTVEGINNLKNTMLAISGQIDVSQSMD 87
Query: 82 ASSYIGKNI 90
A S IGK +
Sbjct: 88 AVSMIGKGV 96
>gnl|CDD|180695 PRK06792, flgD, flagellar basal body rod modification protein;
Validated.
Length = 190
Score = 44.6 bits (105), Expect = 7e-06
Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 6/123 (4%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQ 71
S K+ + +D FLKL + +HQDP M ++ + Q A S MEQ M LQ
Sbjct: 43 STQKTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDKLQ 102
Query: 72 ELLKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128
+ S L ++GK + ++G V ++++ + VDN + + R
Sbjct: 103 STMYSTALDGGMKFLGKYVRGVSNDGKQVTGQVETVRLAENNDVQLIVDNQVVSLRFVER 162
Query: 129 ISN 131
+S+
Sbjct: 163 VSD 165
>gnl|CDD|180283 PRK05842, flgD, flagellar basal body rod modification protein;
Reviewed.
Length = 295
Score = 44.2 bits (104), Expect = 1e-05
Identities = 20/51 (39%), Positives = 34/51 (66%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73
L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E + T+QE+
Sbjct: 28 LDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEV 78
>gnl|CDD|181996 PRK09619, flgD, flagellar basal body rod modification protein;
Reviewed.
Length = 218
Score = 43.6 bits (103), Expect = 2e-05
Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 10/101 (9%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ---------ELLK 75
+ F+ LL+ QI++QDP P +E V+QLA SQ++ + M ++ + L
Sbjct: 30 NNQFMTLLVAQIQNQDPLNPADGTEFVSQLAQLSQVQSTENMAKLMKSNTVLMDNMQTLA 89
Query: 76 SNNLAQASSYI-GKNITNADGSISGVVNAIQVSSTGLTAIT 115
+ NL + IT + ++G + + T IT
Sbjct: 90 TANLVGQQVMVESHEITLGEDPVAGRLTLKHPAPTLTLHIT 130
>gnl|CDD|185035 PRK15076, PRK15076, alpha-galactosidase; Provisional.
Length = 431
Score = 30.6 bits (70), Expect = 0.13
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 100 VVNAIQVSSTGLTAITVDNTEIPITTGIR 128
V+NAIQV G TV + EIP G+R
Sbjct: 79 VINAIQVG--GYEPCTVTDFEIPKKYGLR 105
>gnl|CDD|152338 pfam11902, DUF3422, Protein of unknown function (DUF3422). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria, archaea and
eukaryotes. Proteins in this family are typically
between 426 to 444 amino acids in length.
Length = 419
Score = 30.2 bits (69), Expect = 0.16
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 38 HQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74
H P P+ A +V+ LA+ E + L EL
Sbjct: 15 HARPFPPLPAPARVSHLAILVAEEDRAADRAHLAELC 51
>gnl|CDD|183202 PRK11564, PRK11564, stationary phase inducible protein CsiE;
Provisional.
Length = 426
Score = 25.4 bits (56), Expect = 5.3
Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 18/72 (25%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQD------------------AFLKLLITQIKHQDPTEP 44
I + NP QQ++ +SK++ L Q+ FL LL + ++ DP
Sbjct: 167 ITPQFNPLQQQWLESKAEFQLAQEIGRHWQRRVLQPPPLDEPLFLALLFSMLRAPDPLRD 226
Query: 45 MKASEQVAQLAV 56
++ + A+
Sbjct: 227 AHQRDRRLRQAI 238
>gnl|CDD|177671 PLN00037, PLN00037, photosystem II oxygen-evolving enhancer protein
1; Provisional.
Length = 313
Score = 24.4 bits (53), Expect = 8.0
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 71 QELLKSNNLAQASSY--IGKNITNAD---GSISGVVNAIQVSSTGLTA 113
+EL K NN A+S I ++ ++ G I+GV +IQ S T L +
Sbjct: 249 EELAKENNKNTAASTGNITLSVAKSNPETGEIAGVFESIQPSDTDLGS 296
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.307 0.121 0.306
Gapped
Lambda K H
0.267 0.0556 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,786,263
Number of extensions: 91305
Number of successful extensions: 165
Number of sequences better than 10.0: 1
Number of HSP's gapped: 161
Number of HSP's successfully gapped: 29
Length of query: 131
Length of database: 5,994,473
Length adjustment: 83
Effective length of query: 48
Effective length of database: 4,201,009
Effective search space: 201648432
Effective search space used: 201648432
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 52 (24.2 bits)