RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780520|ref|YP_003064933.1| flagellar basal body rod modification protein [Candidatus Liberibacter asiaticus str. psy62] (131 letters) >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* (A:616-828) Length = 213 Score = 61.1 bits (147), Expect = 5e-11 Identities = 7/108 (6%), Positives = 26/108 (24%), Gaps = 3/108 (2%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKS 76 + ++ + K Q + ++ + + ++E ++ Sbjct: 4 YDSKDGSSYYHEANSDAKDQLDGDGLQFYALKNNFTALTTESNPWTIIKAVKEGVENIED 63 Query: 77 NNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPIT 124 ++ + I S + AI+ + Sbjct: 64 IESSEITETIFAGTFAKQDDDSHYYIHRHANGKPYAAISPNGDGNRDY 111 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688) Length = 258 Score = 29.1 bits (65), Expect = 0.21 Identities = 10/70 (14%), Positives = 19/70 (27%), Gaps = 1/70 (1%) Query: 29 LKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIGK 88 L QIK E + ++ + + + + L A G Sbjct: 33 LVTREAQIKDWVENELEALKLEAEEIPS-EDQNEFLLERTREIHNEAESQLRAAQQQWGN 91 Query: 89 NITNADGSIS 98 + D I+ Sbjct: 92 DFYKRDPRIA 101 >3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* (A:97-281) Length = 185 Score = 26.1 bits (56), Expect = 1.9 Identities = 12/38 (31%), Positives = 21/38 (55%) Query: 29 LKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66 L L+T+ DP++ + +E V L+ QME+ + M Sbjct: 147 LYTLMTRCWDYDPSDRPRFTELVCSLSDVYQMEKDIAM 184 >1pm3_A MTH1895; unknown function, structural genomics, PSI, protein structure initiative; 3.15A {Methanothermobacterthermautotrophicus} (A:) Length = 97 Score = 25.6 bits (56), Expect = 2.7 Identities = 5/46 (10%), Positives = 19/46 (41%) Query: 62 QSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVS 107 + + + + +++ +GK + ++ + G V ++V Sbjct: 4 SHHHHHHSSGLVPRGSHMRIVEEMVGKEVLDSSAKVIGKVKDVEVD 49 >2jlp_A Extracellular superoxide dismutase (Cu-Zn); glycolisation, oxidoreductase, heparin binding, heparin-binding, oxidative stress, antioxidant; 1.70A {Homo sapiens} (A:) Length = 222 Score = 25.5 bits (55), Expect = 2.8 Identities = 9/78 (11%), Positives = 16/78 (20%), Gaps = 15/78 (19%) Query: 55 AVFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKN---------------ITNADGSISG 99 S S K + Q + + A ++G Sbjct: 3 GEDSAEPNSDSAEWIRDMYAKVTEIWQEVMQRRDDDGTLHAACQVQPSATLDAAQPRVTG 62 Query: 100 VVNAIQVSSTGLTAITVD 117 VV Q++ Sbjct: 63 VVLFRQLAPRAKLDAFFA 80 >2pnw_A AGR_C_15P, membrane-bound lytic murein transglycosylase; structural genomics, PSI-2, protein structure initiative; 1.90A {Agrobacterium tumefaciens str} (A:) Length = 380 Score = 25.0 bits (54), Expect = 3.5 Identities = 12/52 (23%), Positives = 16/52 (30%) Query: 79 LAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 L SYI + G G + A +V A+ VD I Sbjct: 252 LWHNRSYIFFREADVAGLDMGPIAAAKVPLVAGRALAVDRLIHTFGLPFFIH 303 >2c9v_A Superoxide dismutase [CU-ZN]; oxidoreductase, acetylation, amyotrophic lateral sclerosis, antioxidant, copper, disease mutation, human Cu; HET: SO4; 1.07A {Homo sapiens} (A:) Length = 153 Score = 24.7 bits (53), Expect = 4.4 Identities = 7/31 (22%), Positives = 12/31 (38%) Query: 92 NADGSISGVVNAIQVSSTGLTAITVDNTEIP 122 DG + G++N Q S G + + Sbjct: 9 KGDGPVQGIINFEQKESNGPVKVWGSIKGLT 39 >1pzl_A Hepatocyte nuclear factor 4-alpha; transcription; HET: MYR; 2.10A {Homo sapiens} (A:) Length = 237 Score = 24.4 bits (52), Expect = 5.2 Identities = 8/67 (11%), Positives = 22/67 (32%), Gaps = 13/67 (19%) Query: 25 QDAFLKLLITQIKHQDPTEPMK-------------ASEQVAQLAVFSQMEQSVQMNSTLQ 71 + L I + + + Q+ + F ++ ++++ LQ Sbjct: 171 RSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFIKLFGMAKIDNLLQ 230 Query: 72 ELLKSNN 78 E+L + Sbjct: 231 EMLLGGS 237 >1nq7_A Nuclear receptor ROR-beta; ligand-binding domain, retinoids, retinoic acid, synthetic ligand, antagonist, transcription; HET: ARL; 1.50A {Rattus norvegicus} (A:) Length = 244 Score = 24.5 bits (52), Expect = 5.6 Identities = 9/63 (14%), Positives = 15/63 (23%), Gaps = 12/63 (19%) Query: 25 QDAFLKLLITQIK--HQDPTEPMK----------ASEQVAQLAVFSQMEQSVQMNSTLQE 72 Q+ L I+ H D K + + +N+ Sbjct: 178 QEKIYFALQHVIQKNHLDDETLAKLIAKIPTITAVCNLHGEKLQVFKQSHPDIVNTLFPP 237 Query: 73 LLK 75 L K Sbjct: 238 LYK 240 >1xtm_B Hypothetical superoxide dismutase-like protein YOJM; SOD, Cu-Zn SOD, SOD-like, superoxide dismutase mutants, structural genomics; 1.60A {Bacillus subtilis} PDB: 1xtl_B 1s4i_B 1u3n_A (B:) Length = 175 Score = 23.9 bits (51), Expect = 7.3 Identities = 6/28 (21%), Positives = 11/28 (39%), Gaps = 1/28 (3%) Query: 90 ITNADGSISGVVNAIQVSSTGLTAITVD 117 + N +G G + + GL I + Sbjct: 26 LVNREGKAVGFIEIKESDDEGLD-IHIS 52 >1to4_A Superoxide dismutase; beta-barrel, oxidoreductase; 1.55A {Schistosoma mansoni} (A:) Length = 156 Score = 24.0 bits (51), Expect = 7.5 Identities = 5/31 (16%), Positives = 11/31 (35%) Query: 92 NADGSISGVVNAIQVSSTGLTAITVDNTEIP 122 + GVV Q + G + + + + Sbjct: 11 TGTAGVKGVVKFTQETDNGPVHVHAEFSGLK 41 >1pzs_A Superoxide dismutase [CU-ZN]; Cu-protein, beta core, antioxidant, metal binding, greek KEY beta barrel, oxidoreductase; 1.63A {Mycobacterium tuberculosis} (A:) Length = 208 Score = 23.9 bits (51), Expect = 8.2 Identities = 4/29 (13%), Positives = 7/29 (24%) Query: 90 ITNADGSISGVVNAIQVSSTGLTAITVDN 118 +T DG+ + I Sbjct: 44 LTAPDGTKVATAKFEFANGYATVTIATTG 72 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.307 0.121 0.306 Gapped Lambda K H 0.267 0.0444 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 732,818 Number of extensions: 24774 Number of successful extensions: 88 Number of sequences better than 10.0: 1 Number of HSP's gapped: 88 Number of HSP's successfully gapped: 17 Length of query: 131 Length of database: 4,956,049 Length adjustment: 78 Effective length of query: 53 Effective length of database: 2,319,259 Effective search space: 122920727 Effective search space used: 122920727 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.6 bits) S2: 50 (23.8 bits)