RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780520|ref|YP_003064933.1| flagellar basal body rod
modification protein [Candidatus Liberibacter asiaticus str. psy62]
         (131 letters)



>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A
           {Streptococcus pyogenes} PDB: 3eif_A* (A:616-828)
          Length = 213

 Score = 61.1 bits (147), Expect = 5e-11
 Identities = 7/108 (6%), Positives = 26/108 (24%), Gaps = 3/108 (2%)

Query: 20  KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKS 76
             +    ++     +  K Q   + ++           +       +   ++E    ++ 
Sbjct: 4   YDSKDGSSYYHEANSDAKDQLDGDGLQFYALKNNFTALTTESNPWTIIKAVKEGVENIED 63

Query: 77  NNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPIT 124
              ++ +  I           S        +     AI+ +       
Sbjct: 64  IESSEITETIFAGTFAKQDDDSHYYIHRHANGKPYAAISPNGDGNRDY 111


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-;
           fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
           reductase, beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688)
          Length = 258

 Score = 29.1 bits (65), Expect = 0.21
 Identities = 10/70 (14%), Positives = 19/70 (27%), Gaps = 1/70 (1%)

Query: 29  LKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIGK 88
           L     QIK     E      +  ++       + +   +        + L  A    G 
Sbjct: 33  LVTREAQIKDWVENELEALKLEAEEIPS-EDQNEFLLERTREIHNEAESQLRAAQQQWGN 91

Query: 89  NITNADGSIS 98
           +    D  I+
Sbjct: 92  DFYKRDPRIA 101


>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase,
           structural genomics, structural genomics consortium,
           SGC, alternative splicing; 1.60A {Homo sapiens} PDB:
           3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
           (A:97-281)
          Length = 185

 Score = 26.1 bits (56), Expect = 1.9
 Identities = 12/38 (31%), Positives = 21/38 (55%)

Query: 29  LKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66
           L  L+T+    DP++  + +E V  L+   QME+ + M
Sbjct: 147 LYTLMTRCWDYDPSDRPRFTELVCSLSDVYQMEKDIAM 184


>1pm3_A MTH1895; unknown function, structural genomics, PSI, protein
           structure initiative; 3.15A
           {Methanothermobacterthermautotrophicus} (A:)
          Length = 97

 Score = 25.6 bits (56), Expect = 2.7
 Identities = 5/46 (10%), Positives = 19/46 (41%)

Query: 62  QSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVS 107
                + +   + + +++      +GK + ++   + G V  ++V 
Sbjct: 4   SHHHHHHSSGLVPRGSHMRIVEEMVGKEVLDSSAKVIGKVKDVEVD 49


>2jlp_A Extracellular superoxide dismutase (Cu-Zn); glycolisation,
           oxidoreductase, heparin binding, heparin-binding,
           oxidative stress, antioxidant; 1.70A {Homo sapiens} (A:)
          Length = 222

 Score = 25.5 bits (55), Expect = 2.8
 Identities = 9/78 (11%), Positives = 16/78 (20%), Gaps = 15/78 (19%)

Query: 55  AVFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKN---------------ITNADGSISG 99
              S    S           K   + Q       +               +  A   ++G
Sbjct: 3   GEDSAEPNSDSAEWIRDMYAKVTEIWQEVMQRRDDDGTLHAACQVQPSATLDAAQPRVTG 62

Query: 100 VVNAIQVSSTGLTAITVD 117
           VV   Q++          
Sbjct: 63  VVLFRQLAPRAKLDAFFA 80


>2pnw_A AGR_C_15P, membrane-bound lytic murein transglycosylase;
           structural genomics, PSI-2, protein structure
           initiative; 1.90A {Agrobacterium tumefaciens str} (A:)
          Length = 380

 Score = 25.0 bits (54), Expect = 3.5
 Identities = 12/52 (23%), Positives = 16/52 (30%)

Query: 79  LAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
           L    SYI     +  G   G + A +V      A+ VD           I 
Sbjct: 252 LWHNRSYIFFREADVAGLDMGPIAAAKVPLVAGRALAVDRLIHTFGLPFFIH 303


>2c9v_A Superoxide dismutase [CU-ZN]; oxidoreductase, acetylation,
           amyotrophic lateral sclerosis, antioxidant, copper,
           disease mutation, human Cu; HET: SO4; 1.07A {Homo
           sapiens} (A:)
          Length = 153

 Score = 24.7 bits (53), Expect = 4.4
 Identities = 7/31 (22%), Positives = 12/31 (38%)

Query: 92  NADGSISGVVNAIQVSSTGLTAITVDNTEIP 122
             DG + G++N  Q  S G   +      + 
Sbjct: 9   KGDGPVQGIINFEQKESNGPVKVWGSIKGLT 39


>1pzl_A Hepatocyte nuclear factor 4-alpha; transcription; HET: MYR;
           2.10A {Homo sapiens} (A:)
          Length = 237

 Score = 24.4 bits (52), Expect = 5.2
 Identities = 8/67 (11%), Positives = 22/67 (32%), Gaps = 13/67 (19%)

Query: 25  QDAFLKLLITQIKHQDPTEPMK-------------ASEQVAQLAVFSQMEQSVQMNSTLQ 71
           +      L   I  +      +              + Q+ +   F ++    ++++ LQ
Sbjct: 171 RSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFIKLFGMAKIDNLLQ 230

Query: 72  ELLKSNN 78
           E+L   +
Sbjct: 231 EMLLGGS 237


>1nq7_A Nuclear receptor ROR-beta; ligand-binding domain, retinoids,
           retinoic acid, synthetic ligand, antagonist,
           transcription; HET: ARL; 1.50A {Rattus norvegicus} (A:)
          Length = 244

 Score = 24.5 bits (52), Expect = 5.6
 Identities = 9/63 (14%), Positives = 15/63 (23%), Gaps = 12/63 (19%)

Query: 25  QDAFLKLLITQIK--HQDPTEPMK----------ASEQVAQLAVFSQMEQSVQMNSTLQE 72
           Q+     L   I+  H D     K                +     +      +N+    
Sbjct: 178 QEKIYFALQHVIQKNHLDDETLAKLIAKIPTITAVCNLHGEKLQVFKQSHPDIVNTLFPP 237

Query: 73  LLK 75
           L K
Sbjct: 238 LYK 240


>1xtm_B Hypothetical superoxide dismutase-like protein YOJM; SOD,
           Cu-Zn SOD, SOD-like, superoxide dismutase mutants,
           structural genomics; 1.60A {Bacillus subtilis} PDB:
           1xtl_B 1s4i_B 1u3n_A (B:)
          Length = 175

 Score = 23.9 bits (51), Expect = 7.3
 Identities = 6/28 (21%), Positives = 11/28 (39%), Gaps = 1/28 (3%)

Query: 90  ITNADGSISGVVNAIQVSSTGLTAITVD 117
           + N +G   G +   +    GL  I + 
Sbjct: 26  LVNREGKAVGFIEIKESDDEGLD-IHIS 52


>1to4_A Superoxide dismutase; beta-barrel, oxidoreductase; 1.55A
           {Schistosoma mansoni} (A:)
          Length = 156

 Score = 24.0 bits (51), Expect = 7.5
 Identities = 5/31 (16%), Positives = 11/31 (35%)

Query: 92  NADGSISGVVNAIQVSSTGLTAITVDNTEIP 122
                + GVV   Q +  G   +  + + + 
Sbjct: 11  TGTAGVKGVVKFTQETDNGPVHVHAEFSGLK 41


>1pzs_A Superoxide dismutase [CU-ZN]; Cu-protein, beta core,
           antioxidant, metal binding, greek KEY beta barrel,
           oxidoreductase; 1.63A {Mycobacterium tuberculosis} (A:)
          Length = 208

 Score = 23.9 bits (51), Expect = 8.2
 Identities = 4/29 (13%), Positives = 7/29 (24%)

Query: 90  ITNADGSISGVVNAIQVSSTGLTAITVDN 118
           +T  DG+          +      I    
Sbjct: 44  LTAPDGTKVATAKFEFANGYATVTIATTG 72


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.307    0.121    0.306 

Gapped
Lambda     K      H
   0.267   0.0444    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 732,818
Number of extensions: 24774
Number of successful extensions: 88
Number of sequences better than 10.0: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 17
Length of query: 131
Length of database: 4,956,049
Length adjustment: 78
Effective length of query: 53
Effective length of database: 2,319,259
Effective search space: 122920727
Effective search space used: 122920727
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 50 (23.8 bits)