RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780520|ref|YP_003064933.1| flagellar basal body rod
modification protein [Candidatus Liberibacter asiaticus str. psy62]
         (131 letters)



>d1g2na_ a.123.1.1 (A:) Ultraspiracle protein, usp {Heliothis
           virescens [TaxId: 7102]}
          Length = 256

 Score = 28.1 bits (62), Expect = 0.25
 Identities = 5/66 (7%), Positives = 20/66 (30%), Gaps = 13/66 (19%)

Query: 25  QDAFLKLLITQIKHQDPTEPMK-------------ASEQVAQLAVFSQMEQSVQMNSTLQ 71
           ++     L    +    +E  +              S +  +   F  +     +   ++
Sbjct: 190 REKMFLCLDEYCRRSRSSEEGRFAALLLRLPALRSISLKSFEHLFFFHLVADTSIAGYIR 249

Query: 72  ELLKSN 77
           + L+++
Sbjct: 250 DALRNH 255


>d2p1ta1 a.123.1.1 (A:229-458) Retinoid-X receptor alpha (RXR-alpha)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 230

 Score = 24.7 bits (53), Expect = 2.7
 Identities = 9/65 (13%), Positives = 24/65 (36%), Gaps = 13/65 (20%)

Query: 25  QDAFLKLLITQIKHQDPTEPMK-------------ASEQVAQLAVFSQMEQSVQMNSTLQ 71
           ++     L    KH+ P +P +                +  +   F ++     +++ L 
Sbjct: 165 REKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLM 224

Query: 72  ELLKS 76
           E+L++
Sbjct: 225 EMLEA 229


>d1pzla_ a.123.1.1 (A:) Hepatocyte nuclear factor 4-alpha {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 233

 Score = 24.7 bits (53), Expect = 2.7
 Identities = 8/67 (11%), Positives = 22/67 (32%), Gaps = 13/67 (19%)

Query: 25  QDAFLKLLITQIKHQDPTEPMK-------------ASEQVAQLAVFSQMEQSVQMNSTLQ 71
           +      L   I  +      +              + Q+ +   F ++    ++++ LQ
Sbjct: 167 RSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFIKLFGMAKIDNLLQ 226

Query: 72  ELLKSNN 78
           E+L   +
Sbjct: 227 EMLLGGS 233


>d1hg4a_ a.123.1.1 (A:) Ultraspiracle protein, usp {Drosophila
           melanogaster [TaxId: 7227]}
          Length = 265

 Score = 23.9 bits (51), Expect = 4.6
 Identities = 7/74 (9%), Positives = 23/74 (31%), Gaps = 13/74 (17%)

Query: 16  KSKSKKTLGQDAFLKLLITQIKHQDPTEPMK-------------ASEQVAQLAVFSQMEQ 62
           KS+++  + ++     L    + + P +  +              S +        ++  
Sbjct: 187 KSRAEIEMCREKVYACLDEHCRLEHPGDDGRFAQLLLRLPALRSISLKCQDHLFLFRITS 246

Query: 63  SVQMNSTLQELLKS 76
              +     E L++
Sbjct: 247 DRPLEELFLEQLEA 260


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.307    0.121    0.306 

Gapped
Lambda     K      H
   0.267   0.0530    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 368,210
Number of extensions: 12941
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 8
Length of query: 131
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 55
Effective length of database: 1,364,116
Effective search space: 75026380
Effective search space used: 75026380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 48 (22.7 bits)