254780521

 Score =  241 bits (614), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 116/153 (75%), Positives = 134/153 (87%)

Query: 1   MNSPLRISLKAGERIFLNGAVVRVNNKVILELLNDITFILEHHVIREEEAITPFHQLYLI 60
           MNSPLRISL+AGERIFLNGA+VRVN+KV+LELLNDITFILE HVIREEEAITP  QLYLI
Sbjct: 1   MNSPLRISLRAGERIFLNGAIVRVNSKVMLELLNDITFILEQHVIREEEAITPLRQLYLI 60

Query: 61  VQMIFLVPTKKDYLIDLGRRYINILFNIIQNQQLILALKNIESLINSGRFFEALKNIRTL 120
           VQM+FLVP KKD  IDL RRYI +L N ++N+Q++LALKNIE L+ SGRFFEALK IRTL
Sbjct: 61  VQMVFLVPAKKDSSIDLCRRYIAVLLNSMRNEQMVLALKNIEFLVASGRFFEALKTIRTL 120

Query: 121 SFIDNIDPNGSAIFASIFQSIRQEIKSWKSTQK 153
             I++++P+G AIFASIFQ IRQEI+SWK  QK
Sbjct: 121 YLIESMEPSGDAIFASIFQCIRQEIESWKLIQK 153

Species: Candidatus Liberibacter solanacearum
Genus: Candidatus Liberibacter
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  145 bits (366), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 72/149 (48%), Positives = 103/149 (69%)

Query: 1   MNSPLRISLKAGERIFLNGAVVRVNNKVILELLNDITFILEHHVIREEEAITPFHQLYLI 60
           M S LRISLKAGERIF+NGAV+RV+ KV LE LND+TF+LE+HV++ E A TP  QLY I
Sbjct: 1   MKSTLRISLKAGERIFINGAVLRVDRKVALEFLNDVTFLLENHVLQPEGATTPLRQLYFI 60

Query: 61  VQMIFLVPTKKDYLIDLGRRYINILFNIIQNQQLILALKNIESLINSGRFFEALKNIRTL 120
            QMI + P  KD+   L R+ I +L    +N++++  LK I++L+++GR F+ALK IR L
Sbjct: 61  AQMILINPEGKDHSTALFRKSITMLLTCFKNEEILAELKRIDALVSTGRAFDALKAIRGL 120

Query: 121 SFIDNIDPNGSAIFASIFQSIRQEIKSWK 149
             I++   N   +  ++ + IR+EI  W+
Sbjct: 121 YAIEDNILNNHEMPPTMVEQIRREIAPWR 149

Species: Rhizobium leguminosarum
Genus: Rhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  145 bits (366), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 72/149 (48%), Positives = 104/149 (69%)

Query: 1   MNSPLRISLKAGERIFLNGAVVRVNNKVILELLNDITFILEHHVIREEEAITPFHQLYLI 60
           M S LRISLKAGERIF+NGAV+RV+ KV LE LND+TF+LE+HV++ E A TP  QLY I
Sbjct: 1   MKSTLRISLKAGERIFINGAVLRVDRKVALEFLNDVTFLLENHVLQPEGATTPLRQLYFI 60

Query: 61  VQMIFLVPTKKDYLIDLGRRYINILFNIIQNQQLILALKNIESLINSGRFFEALKNIRTL 120
            QMI + P  KD+   L R+ I +L +  +N++++  LK I++L+++GR F+ALK IR L
Sbjct: 61  AQMILINPEGKDHSTALFRKSITMLLSCFRNEEILAELKRIDALVSTGRAFDALKAIRGL 120

Query: 121 SFIDNIDPNGSAIFASIFQSIRQEIKSWK 149
             I++   N   +  ++ + IR+EI  W+
Sbjct: 121 YAIEDNILNNHEMPPTMVEQIRREIAPWR 149

Species: Rhizobium leguminosarum
Genus: Rhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  145 bits (365), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 71/149 (47%), Positives = 103/149 (69%)

Query: 1   MNSPLRISLKAGERIFLNGAVVRVNNKVILELLNDITFILEHHVIREEEAITPFHQLYLI 60
           M S LRISLKAGERIF+NGAV+RV+ KV LE LND+TF+LE+HV++ E A TP  QLY I
Sbjct: 1   MKSTLRISLKAGERIFINGAVLRVDRKVALEFLNDVTFLLENHVLQPEGATTPLRQLYFI 60

Query: 61  VQMIFLVPTKKDYLIDLGRRYINILFNIIQNQQLILALKNIESLINSGRFFEALKNIRTL 120
            QMI + P  KD+   + R+ I +L    +N++++  LK I++L+++GR F+ALK IR L
Sbjct: 61  AQMILINPEGKDHSTAMFRKSITMLLTCFKNEEILAELKRIDALVSTGRAFDALKAIRGL 120

Query: 121 SFIDNIDPNGSAIFASIFQSIRQEIKSWK 149
             I++   N   +  ++ + IR+EI  W+
Sbjct: 121 YAIEDNILNNQELPPTMVEQIRREIAPWR 149

Species: Rhizobium etli
Genus: Rhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  145 bits (365), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 71/149 (47%), Positives = 104/149 (69%)

Query: 1   MNSPLRISLKAGERIFLNGAVVRVNNKVILELLNDITFILEHHVIREEEAITPFHQLYLI 60
           M S LRISLKAGERIF+NGAV+RV+ KV LE LND+TF+LE+HV++ E A TP  QLY I
Sbjct: 1   MKSTLRISLKAGERIFINGAVLRVDRKVALEFLNDVTFLLENHVLQPEGATTPLRQLYFI 60

Query: 61  VQMIFLVPTKKDYLIDLGRRYINILFNIIQNQQLILALKNIESLINSGRFFEALKNIRTL 120
            QMI + P  KD+   + R+ I +L +  +N++++  LK I++L+++GR F+ALK IR L
Sbjct: 61  AQMILINPEGKDHSTAMFRKSITMLLSCFKNEEILAELKRIDALVSTGRAFDALKAIRGL 120

Query: 121 SFIDNIDPNGSAIFASIFQSIRQEIKSWK 149
             I++   N   +  ++ + IR+EI  W+
Sbjct: 121 YAIEDNILNNHEMPPTMVEQIRREIAPWR 149

Species: Rhizobium leguminosarum
Genus: Rhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  144 bits (364), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 71/149 (47%), Positives = 103/149 (69%)

Query: 1   MNSPLRISLKAGERIFLNGAVVRVNNKVILELLNDITFILEHHVIREEEAITPFHQLYLI 60
           M S LRISLKAGERIF+NGAV+RV+ KV LE LND+TF+LE+HV++ E A TP  QLY I
Sbjct: 1   MKSTLRISLKAGERIFINGAVLRVDRKVALEFLNDVTFLLENHVLQPEGATTPLRQLYFI 60

Query: 61  VQMIFLVPTKKDYLIDLGRRYINILFNIIQNQQLILALKNIESLINSGRFFEALKNIRTL 120
            QMI + P  KD+   + R+ I +L    +N++++  LK I++L+++GR F+ALK IR L
Sbjct: 61  AQMILINPEGKDHSTAMFRKSITMLLTCFKNEEILAELKRIDALVSTGRAFDALKAIRGL 120

Query: 121 SFIDNIDPNGSAIFASIFQSIRQEIKSWK 149
             I++   N   +  ++ + IR+EI  W+
Sbjct: 121 YAIEDNILNNHELPPTMVEQIRREIAPWR 149

Species: Rhizobium etli
Genus: Rhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  143 bits (361), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 70/149 (46%), Positives = 102/149 (68%)

Query: 1   MNSPLRISLKAGERIFLNGAVVRVNNKVILELLNDITFILEHHVIREEEAITPFHQLYLI 60
           M S LRISLKAGERIF+NGAV+RV+ KV LE LND+TF+LE+HV++ E A TP  QLY I
Sbjct: 1   MKSTLRISLKAGERIFINGAVLRVDRKVALEFLNDVTFLLENHVLQPEGATTPLRQLYFI 60

Query: 61  VQMIFLVPTKKDYLIDLGRRYINILFNIIQNQQLILALKNIESLINSGRFFEALKNIRTL 120
            QMI + P  KD    + R+ I +L    +N++++  LK +++L+++GR F+ALK IR L
Sbjct: 61  AQMILINPEGKDQSTAMFRKSITMLLTCFKNEEILAELKRVDALVSTGRAFDALKAIRGL 120

Query: 121 SFIDNIDPNGSAIFASIFQSIRQEIKSWK 149
             I++   N   +  ++ + IR+EI  W+
Sbjct: 121 YAIEDNIMNNHEMPPTMVEQIRREIAPWR 149

Species: Rhizobium etli
Genus: Rhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  141 bits (355), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 70/149 (46%), Positives = 98/149 (65%)

Query: 1   MNSPLRISLKAGERIFLNGAVVRVNNKVILELLNDITFILEHHVIREEEAITPFHQLYLI 60
           M S LRISLK+GERIF+NGAV+RV+ KV +E LND+TF+LE+HV++ E+A TP  QLY I
Sbjct: 1   MKSTLRISLKSGERIFVNGAVLRVDRKVAIEFLNDVTFLLENHVLQPEDATTPLRQLYFI 60

Query: 61  VQMIFLVPTKKDYLIDLGRRYINILFNIIQNQQLILALKNIESLINSGRFFEALKNIRTL 120
            QMI + P   D    + R+ I +L N  +N +++  LK I+ L+  GR FEALK IR L
Sbjct: 61  AQMILINPEGADQSTSMFRKSIVMLVNCFRNDEVLAELKRIDGLVTQGRAFEALKAIRAL 120

Query: 121 SFIDNIDPNGSAIFASIFQSIRQEIKSWK 149
             I++   N   +  +  + IR+EI  W+
Sbjct: 121 YPIEDQILNAQEMTPATVEQIRKEIAPWR 149

Species: Sinorhizobium medicae
Genus: Sinorhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  140 bits (353), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 68/149 (45%), Positives = 101/149 (67%)

Query: 1   MNSPLRISLKAGERIFLNGAVVRVNNKVILELLNDITFILEHHVIREEEAITPFHQLYLI 60
           M S LRISLK+GE+IF+NGAV+RV+ KV LE LND+TF+LE+HV++ E+A TP  QLY I
Sbjct: 1   MKSTLRISLKSGEKIFINGAVLRVDRKVALEFLNDVTFLLENHVLQPEQATTPLRQLYFI 60

Query: 61  VQMIFLVPTKKDYLIDLGRRYINILFNIIQNQQLILALKNIESLINSGRFFEALKNIRTL 120
            QMI + P  ++   +L R+ +++L N  Q+++++  LK I+ L+ SG+ FEALK IR L
Sbjct: 61  AQMILINPEGREQSTNLFRKSVSMLLNCFQHEEILAELKRIDGLVASGKAFEALKAIRGL 120

Query: 121 SFIDNIDPNGSAIFASIFQSIRQEIKSWK 149
              +    N   +  +  + IR+EI  W+
Sbjct: 121 YPTEEKILNNQEMTPATIEQIRKEIAPWR 149

Species: Agrobacterium sp. H13-3
Genus: Agrobacterium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  140 bits (352), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 68/148 (45%), Positives = 98/148 (66%)

Query: 1   MNSPLRISLKAGERIFLNGAVVRVNNKVILELLNDITFILEHHVIREEEAITPFHQLYLI 60
           M S LRISLKAGERIF+NGAV+RV+ KV LE LND+TF+LE+HV++ E+A TP  QLY I
Sbjct: 1   MKSSLRISLKAGERIFINGAVLRVDRKVALEFLNDVTFLLENHVLQPEQATTPLRQLYFI 60

Query: 61  VQMIFLVPTKKDYLIDLGRRYINILFNIIQNQQLILALKNIESLINSGRFFEALKNIRTL 120
           VQM+ + P   D  + + R+ + +L    +N++++  LK+I+ ++  GR FEALK IR L
Sbjct: 61  VQMMLINPEGADQAMAMFRKSVVMLLTCFKNEEVLSELKHIDGMVTQGRAFEALKAIRAL 120

Query: 121 SFIDNIDPNGSAIFASIFQSIRQEIKSW 148
             I+    N   +     + IR+E+  W
Sbjct: 121 YPIEEQILNTPGMPTGTIEQIRKELAPW 148

Species: Hoeflea phototrophica
Genus: Hoeflea
Family: Phyllobacteriaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  126 bits (320), Expect = 2e-30
 Identities = 51/118 (43%), Positives = 75/118 (63%)

Query: 3   SPLRISLKAGERIFLNGAVVRVNNKVILELLNDITFILEHHVIREEEAITPFHQLYLIVQ 62
           S L++SLK GERIF+NGAV+R + KV LELLND TF+ E  V++ E+A TP  QLY I Q
Sbjct: 2   SGLKLSLKPGERIFINGAVLRNDRKVSLELLNDATFLRERDVLQPEDATTPLRQLYFIAQ 61

Query: 63  MIFLVPTKKDYLIDLGRRYINILFNIIQNQQLILALKNIESLINSGRFFEALKNIRTL 120
           ++ + P   +       R +  L  +  +  ++  LK I+ L+ +GR++EALK +R L
Sbjct: 62  LMLIGPAGAEDARAEFARRLEQLLAVFTDPDILAGLKAIDELVEAGRYYEALKALRGL 119

Length = 132

 Score =  107 bits (270), Expect = 1e-24
 Identities = 39/117 (33%), Positives = 64/117 (54%), Gaps = 1/117 (0%)

Query: 5   LRISLKAGERIFLNGAVVR-VNNKVILELLNDITFILEHHVIREEEAITPFHQLYLIVQM 63
           L++SLK GERI +NGAV+R  + +  LE+ ND   + E  +++ E+A TP  +LY  VQ+
Sbjct: 1   LKLSLKPGERIIINGAVIRNGDRRSRLEIENDAPILREKDILQPEDATTPVRRLYFAVQL 60

Query: 64  IFLVPTKKDYLIDLGRRYINILFNIIQNQQLILALKNIESLINSGRFFEALKNIRTL 120
           + + P  +D    L    +  L     +      L     L+ +GR+++ALK +R L
Sbjct: 61  MLIGPEDRDDARALFLELLEELSAAFADPDSRALLDEATELVLAGRYYKALKALRKL 117

This family consists of several FlbT proteins. FlbT is a post-transcriptional regulator of flagellin. FlbT is associated with the 5' untranslated region (UTR) of fljK (25 kDa flagellin) mRNA and that this association requires a predicted loop structure in the transcript. Mutations within this loop abolish FlbT association and result in increased mRNA stability. It is therefore thought that FlbT promotes the degradation of flagellin mRNA by associating with the 5' UTR. Length = 126

 Score = 44.0 bits (104), Expect = 2e-05
 Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 8/120 (6%)

Query: 4   PLRISLKAGERIFLNGAVVRVNNKVILELL--NDITFILEHHVIREEEAITPFHQLYLIV 61
           PLR+ LK  ERI + G  V  N+      L   D   + E  ++  E A TP  ++YL V
Sbjct: 2   PLRVELKPFERIVI-GQSVITNSDTRARFLIDGDAPILREKDILTAETADTPAKRVYLCV 60

Query: 62  QMIFLVPTKKDYLIDLGRRYINILFNIIQNQQLILAL-KNIESLINSGRFFEALKNIRTL 120
           Q+++L      Y       Y+ ++  +I+       + + I + I +G  ++ALK +R L
Sbjct: 61  QLMYLSNDIPAY----HGTYLGLIRELIEAVPSAWPIIEAINNHILNGDLYKALKELRKL 116

Length = 131

 Score =  132 bits (333), Expect = 5e-32
 Identities = 63/148 (42%), Positives = 95/148 (64%)

Query: 1   MNSPLRISLKAGERIFLNGAVVRVNNKVILELLNDITFILEHHVIREEEAITPFHQLYLI 60
           M S LRISLK GE+IF+NGAV+RV+ KV LELLND+TF+LE+HV++ ++A TP  QLY I
Sbjct: 1   MKSTLRISLKPGEKIFINGAVLRVDRKVALELLNDVTFLLENHVLQPDQATTPLRQLYFI 60

Query: 61  VQMIFLVPTKKDYLIDLGRRYINILFNIIQNQQLILALKNIESLINSGRFFEALKNIRTL 120
            QM+ + P   +   ++ R+ +N+L    ++ +++ ALK I+ L+ +GR FEALK IR L
Sbjct: 61  AQMMLINPAGAEQATEMFRKSLNMLLACFKDAEILAALKRIDGLVMAGRAFEALKAIRGL 120

Query: 121 SFIDNIDPNGSAIFASIFQSIRQEIKSW 148
             I++          +  +  R+    W
Sbjct: 121 YPIEDEILGAQEHVPATVEQGRKAGAPW 148

Length = 148

Probab=100.00  E-value=0  Score=335.16  Aligned_cols=132  Identities=42%  Similarity=0.650  Sum_probs=129.4

Q ss_pred             CCCEEEEECCCCEEEEEEEEEEECCEEEEEEECCCCEEEHHHCCCHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             98658998789889981026741884899997265223157507977704658999999999995767968899999999
Q gi|254780521|r    2 NSPLRISLKAGERIFLNGAVVRVNNKVILELLNDITFILEHHVIREEEAITPFHQLYLIVQMIFLVPTKKDYLIDLGRRY   81 (153)
Q Consensus         2 ~s~Lkl~LKpgERi~INGAVi~~drr~~l~i~n~a~iLre~dil~~eeA~TP~rrlYf~vQ~mll~p~~~~~~~~~~~~~   81 (153)
T Consensus         1 ~~gLkl~LKpgERi~INGAVi~ndrr~~l~i~n~a~iLre~dil~~eeA~TP~rrlYf~vQ~m~l~p~~~~~~~~~~~~~   80 (133)
T PRK00794          1 KSGLVLSLKPGERIFINGAVLRNDRKVRLELLNDATFLLERHVLQPEEATTPLRQLYFAAQLMLIGPADADDARAQFARR   80 (133)
T ss_pred             CCCEEEEECCCCEEEECCEEEECCCEEEEEEEECCCCHHHHHCCCHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             99627985699889984849982880589997067010123048966568879999999999984877758999999999


Q ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             9999831399899999999999986892899999997488999997336898
Q gi|254780521|r   82 INILFNIIQNQQLILALKNIESLINSGRFFEALKNIRTLSFIDNIDPNGSAI  133 (153)
Q Consensus        82 i~~l~~a~~~~~~~~~L~~~~~~V~~g~~Y~ALK~lR~Li~~E~~ll~~~~~  133 (153)
T Consensus        81 ~~~l~~~~~~~~~~~~l~~i~~~v~~g~~Y~ALK~~R~L~~~E~~lL~~~~~  132 (133)
T PRK00794         81 LEGLLAVFKDPDILAGLKAIDELVEAGRYYEALKAIRALYPIEAEILAAVPA  132 (133)
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             9999998689999999999999997788999999998789999999744899

Probab=100.00  E-value=0  Score=333.61  Aligned_cols=148  Identities=43%  Similarity=0.701  Sum_probs=147.4

Q ss_pred             CCCCEEEEECCCCEEEEEEEEEEECCEEEEEEECCCCEEEHHHCCCHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             99865899878988998102674188489999726522315750797770465899999999999576796889999999
Q gi|254780521|r    1 MNSPLRISLKAGERIFLNGAVVRVNNKVILELLNDITFILEHHVIREEEAITPFHQLYLIVQMIFLVPTKKDYLIDLGRR   80 (153)
Q Consensus         1 m~s~Lkl~LKpgERi~INGAVi~~drr~~l~i~n~a~iLre~dil~~eeA~TP~rrlYf~vQ~mll~p~~~~~~~~~~~~   80 (153)
T Consensus         1 mk~tlriSLk~gEki~iNGAVlr~DRkv~lellNdvtfLlEnhVlQpdqaTTPlRqlYF~aqmmlinp~gaeq~~~~F~~   80 (148)
T COG5443           1 MKSTLRISLKPGEKIFINGAVLRVDRKVALELLNDVTFLLENHVLQPDQATTPLRQLYFIAQMMLINPAGAEQATEMFRK   80 (148)
T ss_pred             CCCCEEEEECCCCEEEEECCEEEEECEEEEEEECCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf             99755886358977998441899705257775331057787414781014772899999999995188667889999999


Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCH
Q ss_conf             99999831399899999999999986892899999997488999997336898852156524652002
Q gi|254780521|r   81 YINILFNIIQNQQLILALKNIESLINSGRFFEALKNIRTLSFIDNIDPNGSAIFASIFQSIRQEIKSW  148 (153)
Q Consensus        81 ~i~~l~~a~~~~~~~~~L~~~~~~V~~g~~Y~ALK~lR~Li~~E~~ll~~~~~~p~~~~~i~~~~~~~  148 (153)
T Consensus        81 ~l~~l~~~f~~~eil~~lk~Id~lV~~~~~feALkaiR~lyp~E~e~lg~q~~v~~~v~~g~~~ga~~  148 (148)
T COG5443          81 SLNMLLACFKDAEILAALKRIDGLVMAGRAFEALKAIRGLYPIEDEILGAQEHVPATVEQGRKAGAPW  148 (148)
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCHHHHCCCCC
T ss_conf             99999988277999999999998873438999999986004268987188887774400133246998

Probab=100.00  E-value=3.2e-44  Score=317.69  Aligned_cols=125  Identities=31%  Similarity=0.492  Sum_probs=122.9

Q ss_pred             EEEEECCCCEEEEEEEEEE-ECCEEEEEEECCCCEEEHHHCCCHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             5899878988998102674-188489999726522315750797770465899999999999576796889999999999
Q gi|254780521|r    5 LRISLKAGERIFLNGAVVR-VNNKVILELLNDITFILEHHVIREEEAITPFHQLYLIVQMIFLVPTKKDYLIDLGRRYIN   83 (153)
Q Consensus         5 Lkl~LKpgERi~INGAVi~-~drr~~l~i~n~a~iLre~dil~~eeA~TP~rrlYf~vQ~mll~p~~~~~~~~~~~~~i~   83 (153)
T Consensus         1 Lkl~LKp~Eri~INGAVi~Ngdrr~~l~i~n~a~iLre~dil~~eeA~TP~rrlYf~vQ~m~l~p~~~~~~~~~~~~~~~   80 (126)
T pfam07378         1 LKLSLKPGERIIINGAVIRNGDRRSRLEIENDAPILREKDILQPEDATTPVRRLYFAVQLMLIGPEDRDDARALFLELLE   80 (126)
T ss_pred             CEEEECCCCEEEECCEEEEECCCCEEEEEECCCCEECHHHCCCHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             93560799889985858870797348999617813113304896656887999999999998587566899999999999


Q ss_pred             HHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             9983139989999999999998689289999999748899999733
Q gi|254780521|r   84 ILFNIIQNQQLILALKNIESLINSGRFFEALKNIRTLSFIDNIDPN  129 (153)
Q Consensus        84 ~l~~a~~~~~~~~~L~~~~~~V~~g~~Y~ALK~lR~Li~~E~~ll~  129 (153)
T Consensus        81 ~l~~~~~~p~~~~~l~~~~~~V~~g~~y~ALK~~R~Li~~E~~ll~  126 (126)
T pfam07378        81 ELSAAFADPDSRALLDEATELVLAGRYYKALKALRKLIPYEEELLA  126 (126)
T ss_pred             HHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf             9998755988999999999999779899999999888899999719

This family consists of several FlbT proteins. FlbT is a post-transcriptional regulator of flagellin. FlbT is associated with the 5' untranslated region (UTR) of fljK (25 kDa flagellin) mRNA and that this association requires a predicted loop structure in the transcript. Mutations within this loop abolish FlbT association and result in increased mRNA stability. It is therefore thought that FlbT promotes the degradation of flagellin mRNA by associating with the 5' UTR.

Probab=100.00  E-value=1.1e-33  Score=247.08  Aligned_cols=112  Identities=20%  Similarity=0.257  Sum_probs=104.8

Q ss_pred             EEE-ECCEEEEEEECCCCEEEHHHCCCHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             674-1884899997265223157507977704658999999999995767968899999999999983139989999999
Q gi|254780521|r   21 VVR-VNNKVILELLNDITFILEHHVIREEEAITPFHQLYLIVQMIFLVPTKKDYLIDLGRRYINILFNIIQNQQLILALK   99 (153)
Q Consensus        21 Vi~-~drr~~l~i~n~a~iLre~dil~~eeA~TP~rrlYf~vQ~mll~p~~~~~~~~~~~~~i~~l~~a~~~~~~~~~L~   99 (153)
T Consensus         1 Vi~Ngdrrs~l~i~n~a~iLRekDil~~eeA~TP~rrvYf~vQ~myl~~d-~~~~~~~~~~~~~~l~~~~--p~~~~~l~   77 (113)
T PRK12791          1 VITNSDTRARFLIDGDAPILREKDILTAETADTPAKRVYLCVQLMYLSND-IPAYHGTYLGLIRELIEAV--PSAWPIIE   77 (113)
T ss_pred             CEECCCCCEEEEEECCCHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHC--CHHHHHHH
T ss_conf             94278875268973797035542027965469869999999999982886-0778999999999999869--24799999


Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             999998689289999999748899999733689885
Q gi|254780521|r  100 NIESLINSGRFFEALKNIRTLSFIDNIDPNGSAIFA  135 (153)
Q Consensus       100 ~~~~~V~~g~~Y~ALK~lR~Li~~E~~ll~~~~~~p  135 (153)
T Consensus        78 ~i~~~V~~g~~Y~ALK~~R~Li~~E~~lL~~~~~~p  113 (113)
T PRK12791         78 AINNHILNGDLYKALKELRKLIAREEKLLARAEATP  113 (113)
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             999999686199999999877899999983588998

Probab=90.59  E-value=0.34  Score=29.13  Aligned_cols=32  Identities=28%  Similarity=0.401  Sum_probs=24.8

Q ss_pred             CCCEEEEECCCCEEEEEEEEEE-ECCEEEEEEE
Q ss_conf             9865899878988998102674-1884899997
Q gi|254780521|r    2 NSPLRISLKAGERIFLNGAVVR-VNNKVILELL   33 (153)
Q Consensus         2 ~s~Lkl~LKpgERi~INGAVi~-~drr~~l~i~   33 (153)
T Consensus        11 ys~l~~~LkPge~v~~~~g~~~~M~~~v~l~~~   43 (230)
T TIGR00266        11 YSMLELTLKPGERVLAETGAMVSMDRSVELSTE   43 (230)
T ss_pred             EEEEEEEECCCCEEEECCCCEEEECCCEEEEEE
T ss_conf             148998808885899727707985187799974

.