254780521
flagellar biosynthesis repressor FlbT
GeneID in NCBI database: | 8209516 | Locus tag: | CLIBASIA_02040 |
Protein GI in NCBI database: | 254780521 | Protein Accession: | YP_003064934.1 |
Gene range: | +(761186, 761647) | Protein Length: | 153aa |
Gene description: | flagellar biosynthesis repressor FlbT | ||
COG prediction: | none | ||
KEGG prediction: | flbT; flagellar biosynthesis repressor FlbT; K06601 flagellar protein FlbT | ||
SEED prediction: | putative flagellum biosynthesis repressor protein | ||
Pathway involved in KEGG: | not defined | ||
Subsystem involved in SEED: | - none - | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 153 | flagellar biosynthesis repressor FlbT [Candidatus Liber | |||
315122288 | 153 | flagellar biosynthesis repressor FlbT [Candidatus Liber | 1 | 3e-62 | |
241203128 | 149 | flagellar biosynthesis repressor FlbT [Rhizobium legumi | 1 | 2e-33 | |
116250504 | 149 | flagellar biosynthesis repressor FlbT [Rhizobium legumi | 1 | 2e-33 | |
86356334 | 149 | flagellar biosynthesis repressor FlbT [Rhizobium etli C | 1 | 2e-33 | |
209547950 | 149 | flagellar biosynthesis repressor FlbT [Rhizobium legumi | 1 | 3e-33 | |
190890386 | 149 | flagellin synthesis regulator (repressor) protein [Rhiz | 1 | 3e-33 | |
218462421 | 149 | flagellar biosynthesis repressor FlbT [Rhizobium etli K | 1 | 7e-33 | |
150395507 | 149 | flagellar biosynthesis repressor FlbT [Sinorhizobium me | 1 | 3e-32 | |
325291966 | 149 | flagellar biosynthesis repressor FlbT [Agrobacterium sp | 1 | 6e-32 | |
163758036 | 149 | flagellum biosynthesis repressor [Hoeflea phototrophica | 1 | 7e-32 |
>gi|315122288|ref|YP_004062777.1| flagellar biosynthesis repressor FlbT [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 153 | Back alignment and organism information |
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Score = 241 bits (614), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 116/153 (75%), Positives = 134/153 (87%) Query: 1 MNSPLRISLKAGERIFLNGAVVRVNNKVILELLNDITFILEHHVIREEEAITPFHQLYLI 60 MNSPLRISL+AGERIFLNGA+VRVN+KV+LELLNDITFILE HVIREEEAITP QLYLI Sbjct: 1 MNSPLRISLRAGERIFLNGAIVRVNSKVMLELLNDITFILEQHVIREEEAITPLRQLYLI 60 Query: 61 VQMIFLVPTKKDYLIDLGRRYINILFNIIQNQQLILALKNIESLINSGRFFEALKNIRTL 120 VQM+FLVP KKD IDL RRYI +L N ++N+Q++LALKNIE L+ SGRFFEALK IRTL Sbjct: 61 VQMVFLVPAKKDSSIDLCRRYIAVLLNSMRNEQMVLALKNIEFLVASGRFFEALKTIRTL 120 Query: 121 SFIDNIDPNGSAIFASIFQSIRQEIKSWKSTQK 153 I++++P+G AIFASIFQ IRQEI+SWK QK Sbjct: 121 YLIESMEPSGDAIFASIFQCIRQEIESWKLIQK 153 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|241203128|ref|YP_002974224.1| flagellar biosynthesis repressor FlbT [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 149 | Back alignment and organism information |
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>gi|116250504|ref|YP_766342.1| flagellar biosynthesis repressor FlbT [Rhizobium leguminosarum bv. viciae 3841] Length = 149 | Back alignment and organism information |
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>gi|86356334|ref|YP_468226.1| flagellar biosynthesis repressor FlbT [Rhizobium etli CFN 42] Length = 149 | Back alignment and organism information |
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>gi|209547950|ref|YP_002279867.1| flagellar biosynthesis repressor FlbT [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 149 | Back alignment and organism information |
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>gi|190890386|ref|YP_001976928.1| flagellin synthesis regulator (repressor) protein [Rhizobium etli CIAT 652] Length = 149 | Back alignment and organism information |
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>gi|218462421|ref|ZP_03502512.1| flagellar biosynthesis repressor FlbT [Rhizobium etli Kim 5] Length = 149 | Back alignment and organism information |
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>gi|150395507|ref|YP_001325974.1| flagellar biosynthesis repressor FlbT [Sinorhizobium medicae WSM419] Length = 149 | Back alignment and organism information |
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>gi|325291966|ref|YP_004277830.1| flagellar biosynthesis repressor FlbT [Agrobacterium sp. H13-3] Length = 149 | Back alignment and organism information |
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>gi|163758036|ref|ZP_02165124.1| flagellum biosynthesis repressor [Hoeflea phototrophica DFL-43] Length = 149 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 153 | flagellar biosynthesis repressor FlbT [Candidatus Liber | ||
PRK00794 | 132 | PRK00794, flbT, flagellar biosynthesis repressor FlbT; | 2e-30 | |
pfam07378 | 126 | pfam07378, FlbT, Flagellar protein FlbT | 1e-24 | |
PRK12791 | 131 | PRK12791, flbT, flagellar biosynthesis repressor FlbT; | 2e-05 | |
COG5443 | 148 | COG5443, FlbT, Flagellar biosynthesis regulator FlbT [C | 5e-32 |
>gnl|CDD|179127 PRK00794, flbT, flagellar biosynthesis repressor FlbT; Reviewed | Back alignment and domain information |
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>gnl|CDD|148792 pfam07378, FlbT, Flagellar protein FlbT | Back alignment and domain information |
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>gnl|CDD|183748 PRK12791, flbT, flagellar biosynthesis repressor FlbT; Reviewed | Back alignment and domain information |
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>gnl|CDD|35002 COG5443, FlbT, Flagellar biosynthesis regulator FlbT [Cell motility and secretion] | Back alignment and domain information |
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Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 153 | flagellar biosynthesis repressor FlbT [Candidatus Liber | ||
PRK00794 | 133 | flbT flagellar biosynthesis repressor FlbT; Reviewed | 100.0 | |
COG5443 | 148 | FlbT Flagellar biosynthesis regulator FlbT [Cell motili | 100.0 | |
pfam07378 | 126 | FlbT Flagellar protein FlbT. This family consists of se | 100.0 | |
PRK12791 | 113 | flbT flagellar biosynthesis repressor FlbT; Reviewed | 100.0 | |
TIGR00266 | 230 | TIGR00266 conserved hypothetical protein TIGR00266; Int | 90.59 |
>PRK00794 flbT flagellar biosynthesis repressor FlbT; Reviewed | Back alignment and domain information |
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>COG5443 FlbT Flagellar biosynthesis regulator FlbT [Cell motility and secretion] | Back alignment and domain information |
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>pfam07378 FlbT Flagellar protein FlbT | Back alignment and domain information |
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>PRK12791 flbT flagellar biosynthesis repressor FlbT; Reviewed | Back alignment and domain information |
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>TIGR00266 TIGR00266 conserved hypothetical protein TIGR00266; InterPro: IPR002838 The proteins in this family have no known function | Back alignment and domain information |
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Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
No homologous structure with e-value below 0.005
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 90.00
Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 90.00
Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
No hit with e-value below 0.005
Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
No hit with probability higher than 90.00