HHsearch alignment for GI: 254780521 and conserved domain: PRK00794
>PRK00794 flbT flagellar biosynthesis repressor FlbT; Reviewed.
Probab=100.00 E-value=0 Score=335.16 Aligned_cols=132 Identities=42% Similarity=0.650 Sum_probs=129.4
Q ss_pred CCCEEEEECCCCEEEEEEEEEEECCEEEEEEECCCCEEEHHHCCCHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 98658998789889981026741884899997265223157507977704658999999999995767968899999999
Q gi|254780521|r 2 NSPLRISLKAGERIFLNGAVVRVNNKVILELLNDITFILEHHVIREEEAITPFHQLYLIVQMIFLVPTKKDYLIDLGRRY 81 (153)
Q Consensus 2 ~s~Lkl~LKpgERi~INGAVi~~drr~~l~i~n~a~iLre~dil~~eeA~TP~rrlYf~vQ~mll~p~~~~~~~~~~~~~ 81 (153)
T Consensus 1 ~~gLkl~LKpgERi~INGAVi~ndrr~~l~i~n~a~iLre~dil~~eeA~TP~rrlYf~vQ~m~l~p~~~~~~~~~~~~~ 80 (133)
T PRK00794 1 KSGLVLSLKPGERIFINGAVLRNDRKVRLELLNDATFLLERHVLQPEEATTPLRQLYFAAQLMLIGPADADDARAQFARR 80 (133)
T ss_pred CCCEEEEECCCCEEEECCEEEECCCEEEEEEEECCCCHHHHHCCCHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 99627985699889984849982880589997067010123048966568879999999999984877758999999999
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9999831399899999999999986892899999997488999997336898
Q gi|254780521|r 82 INILFNIIQNQQLILALKNIESLINSGRFFEALKNIRTLSFIDNIDPNGSAI 133 (153)
Q Consensus 82 i~~l~~a~~~~~~~~~L~~~~~~V~~g~~Y~ALK~lR~Li~~E~~ll~~~~~ 133 (153)
T Consensus 81 ~~~l~~~~~~~~~~~~l~~i~~~v~~g~~Y~ALK~~R~L~~~E~~lL~~~~~ 132 (133)
T PRK00794 81 LEGLLAVFKDPDILAGLKAIDELVEAGRYYEALKAIRALYPIEAEILAAVPA 132 (133)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 9999998689999999999999997788999999998789999999744899