HHsearch alignment for GI: 254780521 and conserved domain: PRK12791
>PRK12791 flbT flagellar biosynthesis repressor FlbT; Reviewed.
Probab=100.00 E-value=1.1e-33 Score=247.08 Aligned_cols=112 Identities=20% Similarity=0.257 Sum_probs=104.8
Q ss_pred EEE-ECCEEEEEEECCCCEEEHHHCCCHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 674-1884899997265223157507977704658999999999995767968899999999999983139989999999
Q gi|254780521|r 21 VVR-VNNKVILELLNDITFILEHHVIREEEAITPFHQLYLIVQMIFLVPTKKDYLIDLGRRYINILFNIIQNQQLILALK 99 (153)
Q Consensus 21 Vi~-~drr~~l~i~n~a~iLre~dil~~eeA~TP~rrlYf~vQ~mll~p~~~~~~~~~~~~~i~~l~~a~~~~~~~~~L~ 99 (153)
T Consensus 1 Vi~Ngdrrs~l~i~n~a~iLRekDil~~eeA~TP~rrvYf~vQ~myl~~d-~~~~~~~~~~~~~~l~~~~--p~~~~~l~ 77 (113)
T PRK12791 1 VITNSDTRARFLIDGDAPILREKDILTAETADTPAKRVYLCVQLMYLSND-IPAYHGTYLGLIRELIEAV--PSAWPIIE 77 (113)
T ss_pred CEECCCCCEEEEEECCCHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHC--CHHHHHHH
T ss_conf 94278875268973797035542027965469869999999999982886-0778999999999999869--24799999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 999998689289999999748899999733689885
Q gi|254780521|r 100 NIESLINSGRFFEALKNIRTLSFIDNIDPNGSAIFA 135 (153)
Q Consensus 100 ~~~~~V~~g~~Y~ALK~lR~Li~~E~~ll~~~~~~p 135 (153)
T Consensus 78 ~i~~~V~~g~~Y~ALK~~R~Li~~E~~lL~~~~~~p 113 (113)
T PRK12791 78 AINNHILNGDLYKALKELRKLIAREEKLLARAEATP 113 (113)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 999999686199999999877899999983588998