HHsearch alignment for GI: 254780521 and conserved domain: pfam07378
>pfam07378 FlbT Flagellar protein FlbT. This family consists of several FlbT proteins. FlbT is a post-transcriptional regulator of flagellin. FlbT is associated with the 5' untranslated region (UTR) of fljK (25 kDa flagellin) mRNA and that this association requires a predicted loop structure in the transcript. Mutations within this loop abolish FlbT association and result in increased mRNA stability. It is therefore thought that FlbT promotes the degradation of flagellin mRNA by associating with the 5' UTR.
Probab=100.00 E-value=3.2e-44 Score=317.69 Aligned_cols=125 Identities=31% Similarity=0.492 Sum_probs=122.9
Q ss_pred EEEEECCCCEEEEEEEEEE-ECCEEEEEEECCCCEEEHHHCCCHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 5899878988998102674-188489999726522315750797770465899999999999576796889999999999
Q gi|254780521|r 5 LRISLKAGERIFLNGAVVR-VNNKVILELLNDITFILEHHVIREEEAITPFHQLYLIVQMIFLVPTKKDYLIDLGRRYIN 83 (153)
Q Consensus 5 Lkl~LKpgERi~INGAVi~-~drr~~l~i~n~a~iLre~dil~~eeA~TP~rrlYf~vQ~mll~p~~~~~~~~~~~~~i~ 83 (153)
T Consensus 1 Lkl~LKp~Eri~INGAVi~Ngdrr~~l~i~n~a~iLre~dil~~eeA~TP~rrlYf~vQ~m~l~p~~~~~~~~~~~~~~~ 80 (126)
T pfam07378 1 LKLSLKPGERIIINGAVIRNGDRRSRLEIENDAPILREKDILQPEDATTPVRRLYFAVQLMLIGPEDRDDARALFLELLE 80 (126)
T ss_pred CEEEECCCCEEEECCEEEEECCCCEEEEEECCCCEECHHHCCCHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 93560799889985858870797348999617813113304896656887999999999998587566899999999999
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9983139989999999999998689289999999748899999733
Q gi|254780521|r 84 ILFNIIQNQQLILALKNIESLINSGRFFEALKNIRTLSFIDNIDPN 129 (153)
Q Consensus 84 ~l~~a~~~~~~~~~L~~~~~~V~~g~~Y~ALK~lR~Li~~E~~ll~ 129 (153)
T Consensus 81 ~l~~~~~~p~~~~~l~~~~~~V~~g~~y~ALK~~R~Li~~E~~ll~ 126 (126)
T pfam07378 81 ELSAAFADPDSRALLDEATELVLAGRYYKALKALRKLIPYEEELLA 126 (126)
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 9998755988999999999999779899999999888899999719