RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780521|ref|YP_003064934.1| flagellar biosynthesis
repressor FlbT [Candidatus Liberibacter asiaticus str. psy62]
         (153 letters)



>2hqy_A Conserved hypothetical protein; PSI2, MAD, structural
           genomics, protein structure initiative; HET: COA; 1.80A
           {Bacteroides thetaiotaomicron vpi-5482} (A:119-290)
          Length = 172

 Score = 27.0 bits (60), Expect = 1.4
 Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 15/79 (18%)

Query: 9   LKAGERIFLNGAVVRVNNKV----ILELLNDITFILEHHVIREEEAITPFHQLYLIVQMI 64
           L   E + L G ++ VN K+        +N  TF      +  E+A T     Y ++   
Sbjct: 80  LHNFEALGLTGGILHVNGKIVAFTFGMPINHETF-----GVHVEKADTSIDGAYAMINYE 134

Query: 65  FLVPTKKDYLIDLGRRYIN 83
           F     + Y       YIN
Sbjct: 135 FANRIPEQY------IYIN 147


>3bmz_A Putative uncharacterized protein; violacein, biosynthetic
           protein; HET: PG4 PGE; 1.21A {Chromobacterium violaceum
           atcc 12472} PDB: 2zf3_A 2zf4_A* (A:)
          Length = 199

 Score = 26.1 bits (57), Expect = 2.1
 Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 10/37 (27%)

Query: 48  EEAITPFHQLYLIVQMIFLVPTKKDYLIDLGRRYINI 84
           ++   PF +L+L           +D L  LG R+I  
Sbjct: 99  DDETGPFAELFL----------PRDVLRRLGARHIGR 125


>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking,
           tail-anchored protein, protein binding, GET5, GET4;
           1.99A {Saccharomyces cerevisiae} (A:1-130)
          Length = 130

 Score = 26.3 bits (58), Expect = 2.2
 Identities = 8/25 (32%), Positives = 17/25 (68%)

Query: 98  LKNIESLINSGRFFEALKNIRTLSF 122
           L+  E+ I +G ++EA + +RT++ 
Sbjct: 17  LQRFENKIKAGDYYEAHQTLRTIAN 41


>1xgs_A Methionine aminopeptidase; hyperthermophIle; 1.75A
           {Pyrococcus furiosus} (A:1-202,A:266-295)
          Length = 232

 Score = 25.7 bits (55), Expect = 2.9
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 18  NGAVVRVNNKVILELLNDITFILEHHVIREEEAI 51
            G V+ V   V+ E+ N I    EH +I E++++
Sbjct: 194 AGQVIEVPPPVLKEIRNGIVAQFEHTIIVEKDSV 227


>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme-
           inhibitor complex, structural genomics, protein
           structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo
           sapiens} (W:)
          Length = 461

 Score = 24.9 bits (52), Expect = 5.4
 Identities = 4/34 (11%), Positives = 11/34 (32%), Gaps = 1/34 (2%)

Query: 92  QQLILALKNIESLINSGRFFEALKNIRTLSFIDN 125
           Q L +  + +     +      L+  + +   D 
Sbjct: 6   QSLDIQCEELSDARWAE-LLPLLQQCQVVRLDDC 38


>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A
          {Escherichia coli} (A:105-236)
          Length = 132

 Score = 24.4 bits (52), Expect = 7.5
 Identities = 2/15 (13%), Positives = 5/15 (33%)

Query: 72 DYLIDLGRRYINILF 86
          DY+         ++ 
Sbjct: 10 DYIAKKAGEGAKVIE 24


>3l6u_A ABC-type sugar transport system periplasmic component;
          structural genomics, nysgrc, target 11006S, PSI-2,
          protein structure initiative; 1.90A {Exiguobacterium
          sibiricum} (A:112-249)
          Length = 138

 Score = 24.4 bits (52), Expect = 8.2
 Identities = 3/15 (20%), Positives = 6/15 (40%)

Query: 72 DYLIDLGRRYINILF 86
          + +   GR    I+ 
Sbjct: 15 ELIKQTGRSTGRIVE 29


>2wzp_P Lactococcal phage P2 ORF15; baseplate, viral protein; 2.60A
           {Lactococcus phage P2} PDB: 2x53_S (P:165-326)
          Length = 162

 Score = 24.2 bits (52), Expect = 9.0
 Identities = 12/42 (28%), Positives = 17/42 (40%)

Query: 67  VPTKKDYLIDLGRRYINILFNIIQNQQLILALKNIESLINSG 108
            P    +L D+G  Y  I+F   Q Q  IL   ++      G
Sbjct: 74  TPAGVRFLDDIGNEYTAIVFKTEQVQDYILINTDVNDETYQG 115


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.326    0.142    0.395 

Gapped
Lambda     K      H
   0.267   0.0484    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,134,502
Number of extensions: 50303
Number of successful extensions: 224
Number of sequences better than 10.0: 1
Number of HSP's gapped: 224
Number of HSP's successfully gapped: 22
Length of query: 153
Length of database: 4,956,049
Length adjustment: 81
Effective length of query: 72
Effective length of database: 2,217,844
Effective search space: 159684768
Effective search space used: 159684768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.0 bits)