RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780521|ref|YP_003064934.1| flagellar biosynthesis
repressor FlbT [Candidatus Liberibacter asiaticus str. psy62]
(153 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 36.1 bits (83), Expect = 0.004
Identities = 17/106 (16%), Positives = 32/106 (30%), Gaps = 37/106 (34%)
Query: 51 IT-PFHQLYLI--VQMIFLVPTKKDYLIDLGRRYINILFNIIQNQQLILALKNIESLINS 107
+ PFH L+ +I DL + + + + + + +
Sbjct: 423 VASPFHSHLLVPASDLI---------NKDLVKNNV-----SFNAKDIQIPVYDTF----D 464
Query: 108 GRFFEALKNIRTLSFIDNIDPNGSAIFASIFQSIRQEIKSW-KSTQ 152
G ++R LS +I I I + W +TQ
Sbjct: 465 GS------DLRVLS--GSISE-------RIVDCIIRLPVKWETTTQ 495
Score = 34.9 bits (80), Expect = 0.007
Identities = 23/169 (13%), Positives = 49/169 (28%), Gaps = 59/169 (34%)
Query: 5 LRISLKAGERIFLNGAVVRVNNKVILELLNDITFILEHHVIREEEAI--TPFHQLYLIVQ 62
L + L E +L G NDI H + + T + ++
Sbjct: 84 LNLCLTEFENCYLEG--------------NDI-----HALAAKLLQENDTTLVKTKELI- 123
Query: 63 MIFLVPTKKDY---LIDLGRRYINI----LFNIIQNQQL-ILAL----KNIESLINSGRF 110
K+Y I R + LF + ++A+ N + +
Sbjct: 124 --------KNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTD------DY 169
Query: 111 FEALKNIRTL--SFIDNIDPNGSAIFASI------FQSIRQ---EIKSW 148
FE L+++ + ++ + + + + + I W
Sbjct: 170 FEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW 218
Score = 26.1 bits (57), Expect = 4.0
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 11/41 (26%)
Query: 76 DLGR----RYINILFNIIQNQQLILALKNIE-SLINSGRFF 111
+L + Y+N N L K +E SL+N +
Sbjct: 343 NLTQEQVQDYVNKT-----NSHLPAG-KQVEISLVNGAKNL 377
>2ae0_X Membrane-bound lytic murein transglycosylase A; double-PSI
beta-barrel, small mixed parallel/antiparallel six
stranded beta barrel; 2.00A {Escherichia coli} SCOP:
b.52.1.4 PDB: 2pjj_A 2pic_A 2pi8_A* 2gae_A
Length = 345
Score = 27.5 bits (61), Expect = 1.3
Identities = 16/77 (20%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 76 DLGRRYINILFNIIQNQQLILALKNIESLINSGRFFEALKNIRTLSFIDNIDPNGSAIFA 135
D G++Y + F Q L+ + + IN+G F E + +IR S P +
Sbjct: 7 DRGQQYKDGKFT--QPFSLVNQPDAVGAPINAGDFAEQINHIRNSS------PRLYGNQS 58
Query: 136 SIFQSIRQEIKSWKSTQ 152
+++ ++++ +++ T+
Sbjct: 59 NVYNAVQEWLRAGGDTR 75
>2fk4_A Protein E6; zinc binding domain, oncoprotein, metal binding
protein; NMR {Human papillomavirus type 16} SCOP:
g.90.1.1
Length = 75
Score = 27.1 bits (60), Expect = 1.9
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 47 EEEAITPFHQLYL--IVQMIFLVPTKKDYLIDLGRRYINI 84
E++ P L + I L P +K +D +R+ NI
Sbjct: 13 EQQYNKPLSDLLIRCINCQKPLSPEEKQRHLDKKQRFHNI 52
>3bmz_A Putative uncharacterized protein; violacein, biosynthetic protein;
HET: PG4 PGE; 1.21A {Chromobacterium violaceum atcc
12472} PDB: 2zf3_A 2zf4_A*
Length = 199
Score = 26.5 bits (58), Expect = 2.8
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 10/37 (27%)
Query: 48 EEAITPFHQLYLIVQMIFLVPTKKDYLIDLGRRYINI 84
++ PF +L+L +D L LG R+I
Sbjct: 99 DDETGPFAELFL----------PRDVLRRLGARHIGR 125
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored
protein, protein binding, GET5, GET4; 1.99A
{Saccharomyces cerevisiae}
Length = 312
Score = 26.0 bits (57), Expect = 3.8
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 97 ALKNIESLINSGRFFEALKNIRTLSF 122
L+ E+ I +G ++EA + +RT++
Sbjct: 16 TLQRFENKIKAGDYYEAHQTLRTIAN 41
>2hqy_A Conserved hypothetical protein; PSI2, MAD, structural genomics,
protein structure initiative; HET: COA; 1.80A
{Bacteroides thetaiotaomicron vpi-5482} SCOP: d.108.1.4
d.108.1.4
Length = 305
Score = 25.6 bits (56), Expect = 5.3
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 8 SLKAGERIFLNGAVVRVNNKV----ILELLNDITFIL 40
+L E + L G ++ VN K+ +N TF +
Sbjct: 197 ALHNFEALGLTGGILHVNGKIVAFTFGMPINHETFGV 233
>2wzp_P Lactococcal phage P2 ORF15; baseplate, viral protein; 2.60A
{Lactococcus phage P2} PDB: 2x53_S
Length = 326
Score = 25.4 bits (55), Expect = 6.4
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 67 VPTKKDYLIDLGRRYINILFNIIQNQQLILALKNIESLINSG 108
P +L D+G Y I+F Q Q IL ++ G
Sbjct: 238 TPAGVRFLDDIGNEYTAIVFKTEQVQDYILINTDVNDETYQG 279
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.43A
{Pyrococcus furiosus dsm 3638}
Length = 369
Score = 24.9 bits (53), Expect = 8.8
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 27 KVILELLNDITFILEHHVIREEEAITPF 54
V+ E+++ + + H REE I P+
Sbjct: 49 GVLEEIVSSLRMVGFTHYNREEMLIFPY 76
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.326 0.142 0.395
Gapped
Lambda K H
0.267 0.0518 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,315,947
Number of extensions: 60604
Number of successful extensions: 219
Number of sequences better than 10.0: 1
Number of HSP's gapped: 219
Number of HSP's successfully gapped: 26
Length of query: 153
Length of database: 5,693,230
Length adjustment: 84
Effective length of query: 69
Effective length of database: 3,656,734
Effective search space: 252314646
Effective search space used: 252314646
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.3 bits)