BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780521|ref|YP_003064934.1| flagellar biosynthesis
repressor FlbT [Candidatus Liberibacter asiaticus str. psy62]
         (153 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780521|ref|YP_003064934.1| flagellar biosynthesis repressor FlbT [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 153

 Score =  305 bits (780), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 153/153 (100%), Positives = 153/153 (100%)

Query: 1   MNSPLRISLKAGERIFLNGAVVRVNNKVILELLNDITFILEHHVIREEEAITPFHQLYLI 60
           MNSPLRISLKAGERIFLNGAVVRVNNKVILELLNDITFILEHHVIREEEAITPFHQLYLI
Sbjct: 1   MNSPLRISLKAGERIFLNGAVVRVNNKVILELLNDITFILEHHVIREEEAITPFHQLYLI 60

Query: 61  VQMIFLVPTKKDYLIDLGRRYINILFNIIQNQQLILALKNIESLINSGRFFEALKNIRTL 120
           VQMIFLVPTKKDYLIDLGRRYINILFNIIQNQQLILALKNIESLINSGRFFEALKNIRTL
Sbjct: 61  VQMIFLVPTKKDYLIDLGRRYINILFNIIQNQQLILALKNIESLINSGRFFEALKNIRTL 120

Query: 121 SFIDNIDPNGSAIFASIFQSIRQEIKSWKSTQK 153
           SFIDNIDPNGSAIFASIFQSIRQEIKSWKSTQK
Sbjct: 121 SFIDNIDPNGSAIFASIFQSIRQEIKSWKSTQK 153


>gi|254780241|ref|YP_003064654.1| preprotein translocase subunit SecY [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 444

 Score = 28.5 bits (62), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 10/81 (12%)

Query: 50  AITPFHQLYLIVQMIF-LVPT----KKDY-----LIDLGRRYINILFNIIQNQQLILALK 99
            I P+    +IVQ+I   VP+    KK+      +I+   RY  +L  I+Q   + + LK
Sbjct: 85  GIMPYISASIIVQLIAATVPSLENLKKEGEQGRKVINQYTRYATVLLGILQAYGIAVGLK 144

Query: 100 NIESLINSGRFFEALKNIRTL 120
           N + +++   +F     I TL
Sbjct: 145 NGQGIVSDSDYFFVFSTIITL 165


>gi|254781202|ref|YP_003065615.1| hypothetical protein CLIBASIA_05545 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 864

 Score = 25.0 bits (53), Expect = 0.66,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 19/30 (63%)

Query: 76  DLGRRYINILFNIIQNQQLILALKNIESLI 105
           DL R+ INIL + + N+   L L N+++ +
Sbjct: 604 DLERKEINILKDKVSNKMHALVLDNVQTSV 633


>gi|254780480|ref|YP_003064893.1| 2'-deoxycytidine 5'-triphosphate deaminase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 367

 Score = 23.9 bits (50), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 24  VNNKVILELLNDITFILEHHVI 45
           V  K +LE+ + + F+LEH  I
Sbjct: 306 VGAKAVLEVRSSVPFVLEHGQI 327


>gi|254780180|ref|YP_003064593.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase
          [Candidatus Liberibacter asiaticus str. psy62]
          Length = 360

 Score = 23.1 bits (48), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 7/56 (12%)

Query: 1  MNSPLRIS--LKAGERIFLNG--AVVRVNNKVILELLNDITFILEHHVIREEEAIT 52
          ++ PL IS  L +    FLN   A+V  N KVI   LN + F    H+ R E+ I+
Sbjct: 35 LSCPLVISDHLVSDLPAFLNSNDAIVFNNTKVITAQLNGVRFC---HINRREKEIS 87


>gi|254780245|ref|YP_003064658.1| 50S ribosomal protein L18 [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 120

 Score = 22.7 bits (47), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 11/21 (52%), Positives = 12/21 (57%)

Query: 1  MNSPLRISLKAGERIFLNGAV 21
          +N PLR SLK G  I    AV
Sbjct: 57 LNEPLRSSLKTGANIVAATAV 77


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.326    0.142    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,566
Number of Sequences: 1233
Number of extensions: 3660
Number of successful extensions: 15
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 10
length of query: 153
length of database: 328,796
effective HSP length: 67
effective length of query: 86
effective length of database: 246,185
effective search space: 21171910
effective search space used: 21171910
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 34 (17.7 bits)