HHsearch alignment for GI: 254780522 and conserved domain: PRK12793
>PRK12793 flaF flagellar biosynthesis regulatory protein FlaF; Reviewed.
Probab=100.00 E-value=2.1e-42 Score=270.91 Aligned_cols=114 Identities=45% Similarity=0.798 Sum_probs=110.9
Q ss_pred CHH-HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 926-9999997223797999999999999999999836888399999999999999999999609889989899999999
Q gi|254780522|r 1 MRQ-YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLIS 79 (114)
Q Consensus 1 ~r~-~Y~~~~~~s~~~~R~~E~~~l~~~~~~L~~A~~~~~~~~~~~eAL~~N~rLWt~~~~dl~~~~N~LP~~LRa~Lis 79 (114)
T Consensus 1 my~~sYae~~~ds~~~~Re~E~~al~r~~~~L~~a~~~~~~~~~~~eAl~~nrrlWt~~~~Dl~~~~N~LP~~LRa~lis 80 (115)
T PRK12793 1 MYQFSYAEVMEDSPASARERERQAFDRSIDLLEAARAKGAGSREAIEALLFTRRLWTTLIEDLGSPENALPEELRADLIS 80 (115)
T ss_pred CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 93035999987553483999999999999999999876999799999999999999999998579879999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 99999999999954784312799999999995159
Q gi|254780522|r 80 IGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 (114)
Q Consensus 80 L~~fv~~~t~~v~~~~~~~l~~LI~IN~~I~~GLr 114 (114)
T Consensus 81 l~~fv~k~t~~v~~~~~~~~~~LIeIN~~I~~GLr 115 (115)
T PRK12793 81 IGIWVLKEADRIRQGESNNFAGLIEINTSIRDGLR 115 (115)
T ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 99999999999985885343069999999985773