HHsearch alignment for GI: 254780522 and conserved domain: PRK12794
>PRK12794 flaF flagellar biosynthesis regulatory protein FlaF; Reviewed.
Probab=100.00 E-value=4.3e-38 Score=245.43 Aligned_cols=111 Identities=27% Similarity=0.434 Sum_probs=103.8
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 26999999722379799999999999999999983688-83999999999999999999996098899898999999999
Q gi|254780522|r 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLP-NSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI 80 (114)
Q Consensus 2 r~~Y~~~~~~s~~~~R~~E~~~l~~~~~~L~~A~~~~~-~~~~~~eAL~~N~rLWt~~~~dl~~~~N~LP~~LRa~LisL 80 (114)
T Consensus 5 ~~AY~~~~~~-t~tpR~~E~~~~~~~t~~L~~a~~~~~~~~~~l~~AL~~N~rLWt~~~~dl~~~~N~LP~~LRa~lisL 83 (122)
T PRK12794 5 AQAYARTAQP-TRTPREIEYQALAKATRQLQDAQSNGPDGFAALAEALHFNRKLWSIFASDVASPDNPLPIELRANIANL 83 (122)
T ss_pred HHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 9999987620-379499999999999999999987387327999999999999999999986698799999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 9999999999954784312799999999995159
Q gi|254780522|r 81 GLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 (114)
Q Consensus 81 ~~fv~~~t~~v~~~~~~~l~~LI~IN~~I~~GLr 114 (114)
T Consensus 84 ~~fv~~~t~~vl~~~-~~l~~LI~IN~~I~~GL~ 116 (122)
T PRK12794 84 SEFVLKQSSKVLRKP-EKLTPLIEINRNIAAGLS 116 (122)
T ss_pred HHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHCC
T ss_conf 999999999998586-031289999999997653