HHsearch alignment for GI: 254780522 and conserved domain: PRK12794

>PRK12794 flaF flagellar biosynthesis regulatory protein FlaF; Reviewed.
Probab=100.00  E-value=4.3e-38  Score=245.43  Aligned_cols=111  Identities=27%  Similarity=0.434  Sum_probs=103.8

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf             26999999722379799999999999999999983688-83999999999999999999996098899898999999999
Q gi|254780522|r    2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLP-NSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI   80 (114)
Q Consensus         2 r~~Y~~~~~~s~~~~R~~E~~~l~~~~~~L~~A~~~~~-~~~~~~eAL~~N~rLWt~~~~dl~~~~N~LP~~LRa~LisL   80 (114)
T Consensus         5 ~~AY~~~~~~-t~tpR~~E~~~~~~~t~~L~~a~~~~~~~~~~l~~AL~~N~rLWt~~~~dl~~~~N~LP~~LRa~lisL   83 (122)
T PRK12794          5 AQAYARTAQP-TRTPREIEYQALAKATRQLQDAQSNGPDGFAALAEALHFNRKLWSIFASDVASPDNPLPIELRANIANL   83 (122)
T ss_pred             HHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf             9999987620-379499999999999999999987387327999999999999999999986698799999999999999


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf             9999999999954784312799999999995159
Q gi|254780522|r   81 GLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK  114 (114)
Q Consensus        81 ~~fv~~~t~~v~~~~~~~l~~LI~IN~~I~~GLr  114 (114)
T Consensus        84 ~~fv~~~t~~vl~~~-~~l~~LI~IN~~I~~GL~  116 (122)
T PRK12794         84 SEFVLKQSSKVLRKP-EKLTPLIEINRNIAAGLS  116 (122)
T ss_pred             HHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHCC
T ss_conf             999999999998586-031289999999997653