HHsearch alignment for GI: 254780522 and conserved domain: pfam07309
>pfam07309 FlaF Flagellar protein FlaF. This family consists of several bacterial FlaF flagellar proteins. FlaF and FlaG are trans-acting, regulatory factors that modulate flagellin synthesis during flagellum biogenesis.
Probab=100.00 E-value=1.8e-38 Score=247.69 Aligned_cols=111 Identities=35% Similarity=0.594 Sum_probs=106.1
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 26999999722379799999999999999999983688839999999999999999999960988998989999999999
Q gi|254780522|r 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIG 81 (114)
Q Consensus 2 r~~Y~~~~~~s~~~~R~~E~~~l~~~~~~L~~A~~~~~~~~~~~eAL~~N~rLWt~~~~dl~~~~N~LP~~LRa~LisL~ 81 (114)
T Consensus 3 ~~AY~~~~~-~~~t~Re~E~~~l~~~~~~L~~A~~~~~~~~~~~~AL~~N~rLWt~~~~dl~~~~N~LP~eLRa~lisL~ 81 (113)
T pfam07309 3 QSAYARVAQ-STATPREREAQALARATARLQQARKAGAAGREALEALHFNRKLWTIFAADLASPDNPLPQELRANLISLG 81 (113)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 888998874-3379499999999999999999986786739999999999999999999864988999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 99999999995478431279999999999515
Q gi|254780522|r 82 LWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 (114)
Q Consensus 82 ~fv~~~t~~v~~~~~~~l~~LI~IN~~I~~GL 113 (114)
T Consensus 82 ~fv~~~t~~v~~~~~~~l~~LI~IN~~I~~GL 113 (113)
T pfam07309 82 LFVLKHTSKVLAGPADDLDPLIEINRAIADGL 113 (113)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC
T ss_conf 99999999998087544178999999988309