Query gi|254780522|ref|YP_003064935.1| flagellar biosynthesis regulatory protein FlaF [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 114
No_of_seqs 106 out of 148
Neff 5.5
Searched_HMMs 13730
Date Wed Jun 1 10:47:53 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780522.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vh6a_ a.24.19.1 (A:) Flagell 75.6 2.3 0.00017 19.5 9.4 93 15-112 2-97 (102)
2 d1sj7a1 a.215.1.1 (A:488-654) 67.2 3.3 0.00024 18.5 4.1 88 2-93 64-166 (167)
3 d1orja_ a.24.19.1 (A:) Flagell 66.9 3.6 0.00026 18.4 10.0 109 2-112 4-115 (126)
4 d1mp1a_ a.188.1.1 (A:) Ser/Arg 22.9 20 0.0015 13.9 4.0 28 46-74 74-101 (111)
5 d1jb0j_ f.23.18.1 (J:) Subunit 14.9 30 0.0022 12.9 1.3 10 100-109 24-33 (41)
6 d1puee_ a.4.5.21 (E:) Transcri 10.7 37 0.0027 12.4 0.8 16 53-68 3-18 (88)
7 d1k78a1 a.4.1.5 (A:19-81) Pax- 10.7 42 0.003 12.1 2.5 18 65-82 11-28 (63)
8 d1awca_ a.4.5.21 (A:) GA bindi 9.2 47 0.0034 11.7 1.6 16 53-68 2-17 (110)
9 d1flia_ a.4.5.21 (A:) Fli-1 {H 9.1 46 0.0034 11.8 0.8 16 53-68 7-22 (98)
10 d1rzhh2 f.23.10.1 (H:11-35) Ph 8.5 50 0.0037 11.6 1.0 10 76-85 1-10 (26)
No 1
>d1vh6a_ a.24.19.1 (A:) Flagellar export chaperone FliS {Bacillus subtilis [TaxId: 1423]}
Probab=75.57 E-value=2.3 Score=19.54 Aligned_cols=93 Identities=9% Similarity=0.125 Sum_probs=70.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH-HHH
Q ss_conf 97999999999999999999836--888399999999999999999999609889989899999999999999999-999
Q gi|254780522|r 15 ECRKREHWILDRSISLLSIAHKS--LPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKEC-ERI 91 (114)
Q Consensus 15 ~~R~~E~~~l~~~~~~L~~A~~~--~~~~~~~~eAL~~N~rLWt~~~~dl~~~~N~LP~~LRa~LisL~~fv~~~t-~~v 91 (114)
||-+.=-.+|..+...|..|... ..+..+..+++..-+..-+.+...|- .+ .++=.||.+|-.|+.++- ...
T Consensus 2 sP~~Li~mLyd~~i~~l~~a~~ai~~~d~~~~~~~~~ka~~Ii~~L~~sLd-~~----geiA~nL~~LY~y~~~~L~~a~ 76 (102)
T d1vh6a_ 2 TPGELTLMLYNGCLKFIRLAAQAIENDDMERKNENLIKAQNIIQELNFTLN-RN----IELSASMGAMYDYMYRRLVQAN 76 (102)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH-HH----HHHTTHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC-CC----HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999998857999999999999999999875005-88----3999879999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHHH
Q ss_conf 547843127999999999951
Q gi|254780522|r 92 RRNKSNSYQDIIDVISIVRDG 112 (114)
Q Consensus 92 ~~~~~~~l~~LI~IN~~I~~G 112 (114)
...+.+.++..+++=..+.+|
T Consensus 77 ~~~d~~~l~~v~~~l~~l~ea 97 (102)
T d1vh6a_ 77 IKNDTGMLAEVEGYVTDFRDA 97 (102)
T ss_dssp HHTCHHHHHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHHHH
T ss_conf 869999999999999999999
No 2
>d1sj7a1 a.215.1.1 (A:488-654) A middle domain of Talin 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=67.24 E-value=3.3 Score=18.55 Aligned_cols=88 Identities=10% Similarity=0.031 Sum_probs=53.6
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHH----HHH---------H-HHC-CCCHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 26999999722379799999999999999----999---------9-836-88839999999999999999999960988
Q gi|254780522|r 2 RQYYHETIQESSIECRKREHWILDRSISL----LSI---------A-HKS-LPNSKQAVEALFYTSRVWVVFIQDLVSED 66 (114)
Q Consensus 2 r~~Y~~~~~~s~~~~R~~E~~~l~~~~~~----L~~---------A-~~~-~~~~~~~~eAL~~N~rLWt~~~~dl~~~~ 66 (114)
.-+-++++.-++.+|+++.|.+...+... |.. | .+. ...+..+.+|- |+|=..|.. |..+.
T Consensus 64 ~AatA~vv~lTs~~~~e~DytaVG~aittIssNL~emsk~vrl~aAL~dd~~~~g~~Ll~AA---r~L~~Afsd-LLkaa 139 (167)
T d1sj7a1 64 TAGTASVVNLTAGDPAETDYTAVGCAVTTISSNLTEMSRGVKLLAALLEDEGGNGRPLLQAA---KGLAGAVSE-LLRSA 139 (167)
T ss_dssp HHHHHHHHHHSCSCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHH---HHHHHHHHH-HHHHT
T ss_pred HHHHHHHHHCCCCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH---HHHHHHHHH-HHHHC
T ss_conf 99999996412689444660422217999961379999989999988203467668999999---999999999-99836
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 998989999999999999999999954
Q gi|254780522|r 67 NHLPQEVKLNLISIGLWVLKECERIRR 93 (114)
Q Consensus 67 N~LP~~LRa~LisL~~fv~~~t~~v~~ 93 (114)
+|...+-|++|+.-+.-|-..+..++.
T Consensus 140 ~p~s~e~rq~lL~AA~~VG~as~~lL~ 166 (167)
T d1sj7a1 140 QPASAEPRQNLLQAAGNVGQASGELLQ 166 (167)
T ss_dssp CTTCCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 976678516899999999998998850
No 3
>d1orja_ a.24.19.1 (A:) Flagellar export chaperone FliS {Aquifex aeolicus [TaxId: 63363]}
Probab=66.85 E-value=3.6 Score=18.36 Aligned_cols=109 Identities=17% Similarity=0.192 Sum_probs=68.7
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC--CHHHH-HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 26999999722379799999999999999999983688--83999-9999999999999999960988998989999999
Q gi|254780522|r 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLP--NSKQA-VEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLI 78 (114)
Q Consensus 2 r~~Y~~~~~~s~~~~R~~E~~~l~~~~~~L~~A~~~~~--~~~~~-~eAL~~N~rLWt~~~~dl~~~~N~LP~~LRa~Li 78 (114)
.++|.++.- .+.+|-+.=-.+|..+...|..|..... +..+. .+....-.|.=.++.....+=|-.--.++=.+|.
T Consensus 4 ~~~Y~~~~v-~tasP~~Li~mLyd~~i~~l~~a~~a~~~~d~~~~~~~~~~~l~ka~~Ii~~L~~~Ld~e~GgeiA~nL~ 82 (126)
T d1orja_ 4 AEAYFQNMV-ETATPLEQIILLYDKAIECLERAIEIYDQVNELEKRKEFVENIDRVYDIISALKSFLDHEKGKEIAKNLD 82 (126)
T ss_dssp GGGTSCTTC-CCCHHHHHHHHHHHHHHHHHHHHHHTGGGTTSHHHHHHHHHHHHHHHHHHHHHHHTCCTTTSHHHHHHHH
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 899998628-4399999999999999999999999998267787877799999999999999997636313528998899
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 9999999999999547843127999999999951
Q gi|254780522|r 79 SIGLWVLKECERIRRNKSNSYQDIIDVISIVRDG 112 (114)
Q Consensus 79 sL~~fv~~~t~~v~~~~~~~l~~LI~IN~~I~~G 112 (114)
.|-.|+.++.-.+ ..+.+.++..+.|=..|.+|
T Consensus 83 ~lY~~~~~~L~~a-~~~~~~i~e~~~il~~l~ea 115 (126)
T d1orja_ 83 TIYTIILNTLVKV-DKTKEELQKILEILKDLREA 115 (126)
T ss_dssp HHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHH
T ss_conf 9999999999987-58899999999999999999
No 4
>d1mp1a_ a.188.1.1 (A:) Ser/Arg-related nuclear matrix protein srm160 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.95 E-value=20 Score=13.94 Aligned_cols=28 Identities=11% Similarity=0.297 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf 99999999999999996098899898999
Q gi|254780522|r 46 EALFYTSRVWVVFIQDLVSEDNHLPQEVK 74 (114)
Q Consensus 46 eAL~~N~rLWt~~~~dl~~~~N~LP~~LR 74 (114)
+|-.|-..||..+++.-.+++ +.|.++-
T Consensus 74 ~a~~Fv~eLW~LLi~aq~s~~-GIP~~~l 101 (111)
T d1mp1a_ 74 NAREFMGELWPLLLSAQENIA-GIPSAFL 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHTTSSS-SCCHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCC-CCCHHHH
T ss_conf 099999999999997434876-8769999
No 5
>d1jb0j_ f.23.18.1 (J:) Subunit IX of photosystem I reaction centre, PsaJ {Synechococcus elongatus [TaxId: 32046]}
Probab=14.86 E-value=30 Score=12.92 Aligned_cols=10 Identities=10% Similarity=0.059 Sum_probs=6.8
Q ss_pred HHHHHHHHHH
Q ss_conf 7999999999
Q gi|254780522|r 100 QDIIDVISIV 109 (114)
Q Consensus 100 ~~LI~IN~~I 109 (114)
.-||||||-.
T Consensus 24 G~lIEiNRFf 33 (41)
T d1jb0j_ 24 GILIEFNRFY 33 (41)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHHC
T ss_conf 9999899628
No 6
>d1puee_ a.4.5.21 (E:) Transcription factor PU.1, residues 171-259 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.70 E-value=37 Score=12.39 Aligned_cols=16 Identities=25% Similarity=0.364 Sum_probs=11.4
Q ss_pred HHHHHHHHHHCCCCCC
Q ss_conf 9999999996098899
Q gi|254780522|r 53 RVWVVFIQDLVSEDNH 68 (114)
Q Consensus 53 rLWt~~~~dl~~~~N~ 68 (114)
+||-++...|.+|+|.
T Consensus 3 ~LwqFL~~LL~d~~~~ 18 (88)
T d1puee_ 3 RLYQFLLDLLRSGDMK 18 (88)
T ss_dssp CHHHHHHHHHHHTCCT
T ss_pred CHHHHHHHHHCCCCCC
T ss_conf 5999999997594579
No 7
>d1k78a1 a.4.1.5 (A:19-81) Pax-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.66 E-value=42 Score=12.07 Aligned_cols=18 Identities=17% Similarity=0.429 Sum_probs=14.3
Q ss_pred CCCCCCHHHHHHHHHHHH
Q ss_conf 889989899999999999
Q gi|254780522|r 65 EDNHLPQEVKLNLISIGL 82 (114)
Q Consensus 65 ~~N~LP~~LRa~LisL~~ 82 (114)
++-|||.+||..++.+..
T Consensus 11 ~GrPls~DLR~Riv~~~~ 28 (63)
T d1k78a1 11 NGRPLPDVVRQRIVELAH 28 (63)
T ss_dssp TTSCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
T ss_conf 998599999999999999
No 8
>d1awca_ a.4.5.21 (A:) GA binding protein (GABP) alpha {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.20 E-value=47 Score=11.74 Aligned_cols=16 Identities=19% Similarity=0.611 Sum_probs=12.4
Q ss_pred HHHHHHHHHHCCCCCC
Q ss_conf 9999999996098899
Q gi|254780522|r 53 RVWVVFIQDLVSEDNH 68 (114)
Q Consensus 53 rLWt~~~~dl~~~~N~ 68 (114)
+||-++...|.+|+++
T Consensus 2 ~Lw~FL~~LL~d~~~~ 17 (110)
T d1awca_ 2 QLWQFLLELLTDKDAR 17 (110)
T ss_dssp CHHHHHHHHHTCTTTT
T ss_pred CHHHHHHHHHCCCCCC
T ss_conf 1899999997496669
No 9
>d1flia_ a.4.5.21 (A:) Fli-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.07 E-value=46 Score=11.81 Aligned_cols=16 Identities=19% Similarity=0.522 Sum_probs=0.0
Q ss_pred HHHHHHHHHHCCCCCC
Q ss_conf 9999999996098899
Q gi|254780522|r 53 RVWVVFIQDLVSEDNH 68 (114)
Q Consensus 53 rLWt~~~~dl~~~~N~ 68 (114)
+||-++...|.+|+|.
T Consensus 7 ~Lw~FL~~LL~d~~~~ 22 (98)
T d1flia_ 7 QLWQFLLELLSDSANA 22 (98)
T ss_dssp CSHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHCCCCCC
T ss_conf 2999999996693567
No 10
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=8.52 E-value=50 Score=11.58 Aligned_cols=10 Identities=20% Similarity=0.627 Sum_probs=0.0
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q gi|254780522|r 76 NLISIGLWVL 85 (114)
Q Consensus 76 ~LisL~~fv~ 85 (114)
+|.|+++|..
T Consensus 1 dlaslaiw~f 10 (26)
T d1rzhh2 1 DLASLAIYSF 10 (26)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
T ss_conf 9788899999
Done!