BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780522|ref|YP_003064935.1| flagellar biosynthesis regulatory protein FlaF [Candidatus Liberibacter asiaticus str. psy62] (114 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780522|ref|YP_003064935.1| flagellar biosynthesis regulatory protein FlaF [Candidatus Liberibacter asiaticus str. psy62] gi|254040199|gb|ACT56995.1| flagellar biosynthesis regulatory protein FlaF [Candidatus Liberibacter asiaticus str. psy62] Length = 114 Score = 231 bits (588), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 114/114 (100%), Positives = 114/114 (100%) Query: 1 MRQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQ 60 MRQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQ Sbjct: 1 MRQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQ 60 Query: 61 DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK Sbjct: 61 DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 >gi|315122287|ref|YP_004062776.1| flagellar biosynthesis regulatory protein FlaF [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495689|gb|ADR52288.1| flagellar biosynthesis regulatory protein FlaF [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 114 Score = 181 bits (460), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 86/114 (75%), Positives = 102/114 (89%) Query: 1 MRQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQ 60 MRQYY+E +QESS+E RKRE WIL++SISLLS A +S PNS++ VEAL+YT+RVWVVFIQ Sbjct: 1 MRQYYNEIVQESSVESRKREFWILNKSISLLSSAQQSKPNSREVVEALYYTNRVWVVFIQ 60 Query: 61 DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 DLVSE N L +EVKLNLISIGLW+L+ECERIRRN+SN+YQ IIDV S+VRDGLK Sbjct: 61 DLVSESNQLTEEVKLNLISIGLWILEECERIRRNESNNYQAIIDVTSVVRDGLK 114 >gi|222084888|ref|YP_002543417.1| flagellin synthesis regulator protein [Agrobacterium radiobacter K84] gi|221722336|gb|ACM25492.1| flagellin synthesis regulator protein [Agrobacterium radiobacter K84] Length = 115 Score = 130 bits (328), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 63/115 (54%), Positives = 85/115 (73%), Gaps = 1/115 (0%) Query: 1 MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M Q+ Y E +Q++ + ++RE +LDRSI+LL+ A ++A+EALFYT RVWV FI Sbjct: 1 MYQFSYAEVMQDAVADAKERERQVLDRSITLLAAARDKEKYGREAIEALFYTRRVWVSFI 60 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 +DL S DN L E++ NLISI LW+LKEC+RIRR +S +YQ IIDV +I+RDGLK Sbjct: 61 EDLKSPDNQLNVELRANLISIALWILKECDRIRRRQSENYQGIIDVTTIIRDGLK 115 >gi|116250503|ref|YP_766341.1| flagellar biosynthesis regulatory protein FlaF [Rhizobium leguminosarum bv. viciae 3841] gi|115255151|emb|CAK06225.1| putative flagellar synthesis related protein [Rhizobium leguminosarum bv. viciae 3841] Length = 115 Score = 128 bits (321), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 62/115 (53%), Positives = 86/115 (74%), Gaps = 1/115 (0%) Query: 1 MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M Q+ Y E +Q+S + ++RE +LDRSI LLS+A + ++A+EALFYT RVW+ FI Sbjct: 1 MYQFSYAEVMQDSVADAKEREWQVLDRSIDLLSLAREKEKYGREAIEALFYTRRVWISFI 60 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 +DL DN L E++ NLISI +W+LKEC+RIR+ +SN+YQ IIDV +I+RDGLK Sbjct: 61 EDLKHPDNQLEIELRANLISIAIWILKECDRIRKRQSNNYQGIIDVTTIIRDGLK 115 >gi|209547949|ref|YP_002279866.1| flagellar biosynthesis regulatory protein FlaF [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533705|gb|ACI53640.1| flagellar FlaF family protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 115 Score = 126 bits (317), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 62/115 (53%), Positives = 85/115 (73%), Gaps = 1/115 (0%) Query: 1 MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M Q+ Y E +Q+S + ++RE +LDRSI LLS+A + ++A+EALFYT RVW+ FI Sbjct: 1 MYQFSYAEVMQDSVADAKEREWQVLDRSIDLLSLAREKEKYGREAIEALFYTRRVWISFI 60 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 +DL DN L E++ NLISI +W+LKEC+RIR+ SN+YQ IIDV +I+RDGLK Sbjct: 61 EDLKHPDNQLEIELRANLISIAIWILKECDRIRKRLSNNYQGIIDVTTIIRDGLK 115 >gi|86356333|ref|YP_468225.1| flagellar biosynthesis regulatory protein FlaF [Rhizobium etli CFN 42] gi|218671598|ref|ZP_03521268.1| flagellar biosynthesis regulatory protein FlaF [Rhizobium etli GR56] gi|86280435|gb|ABC89498.1| flagellin synthesis regulator protein [Rhizobium etli CFN 42] Length = 115 Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 61/115 (53%), Positives = 84/115 (73%), Gaps = 1/115 (0%) Query: 1 MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M Q+ Y E +Q+S + ++RE +LDRSI LLS+A ++A+EALFYT RVW+ FI Sbjct: 1 MYQFSYAEVMQDSVADAKEREWQVLDRSIELLSLARDKEKYGREAIEALFYTRRVWISFI 60 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 +DL DN L +++ NLISI +W+LKEC+RIR+ SN+YQ IIDV +I+RDGLK Sbjct: 61 EDLKHPDNQLDVQLRANLISIAIWILKECDRIRKRLSNNYQGIIDVTTIIRDGLK 115 >gi|222147592|ref|YP_002548549.1| flagellar biosynthesis regulatory protein FlaF [Agrobacterium vitis S4] gi|221734580|gb|ACM35543.1| FLAF protein [Agrobacterium vitis S4] Length = 115 Score = 124 bits (312), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 58/115 (50%), Positives = 84/115 (73%), Gaps = 1/115 (0%) Query: 1 MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M Q+ Y+E +++ + ++RE +LDRSI LLS A + ++ +EAL+YT RVW+ FI Sbjct: 1 MYQFSYNEIMEDGVADAKERERQVLDRSIDLLSQAKTAGKYGREGIEALYYTRRVWIRFI 60 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 +DL DN L E++ NLISI LW+LKEC+RIR+ +S++YQ IIDV +I+RDGLK Sbjct: 61 EDLKQPDNQLGTELRANLISIALWILKECDRIRKRESDNYQGIIDVTTIIRDGLK 115 >gi|218462422|ref|ZP_03502513.1| flagellar biosynthesis regulatory protein FlaF [Rhizobium etli Kim 5] Length = 115 Score = 124 bits (311), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 60/115 (52%), Positives = 84/115 (73%), Gaps = 1/115 (0%) Query: 1 MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M Q+ Y E +Q+S + ++RE +LDRSI LL++A ++A+EALFYT RVW+ FI Sbjct: 1 MYQFSYAEVMQDSVADAKEREWQVLDRSIELLALARDKEKYGREAIEALFYTRRVWISFI 60 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 +DL DN L +++ NLISI +W+LKEC+RIR+ SN+YQ IIDV +I+RDGLK Sbjct: 61 EDLKHPDNQLDVQLRANLISIAIWILKECDRIRKRLSNNYQGIIDVTTIIRDGLK 115 >gi|241203127|ref|YP_002974223.1| flagellar biosynthesis regulatory protein FlaF [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857017|gb|ACS54684.1| flagellar FlaF family protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 115 Score = 124 bits (311), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 60/115 (52%), Positives = 84/115 (73%), Gaps = 1/115 (0%) Query: 1 MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M Q+ Y E +Q+S + ++RE +LDRSI LL+ A + ++A+EALFYT RVW+ FI Sbjct: 1 MYQFSYAEVMQDSVADAKEREWQVLDRSIDLLAAAREKEKYGREAIEALFYTRRVWISFI 60 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 +DL DN L ++ NLISI +W+LKEC+RIR+ +SN+YQ IIDV +I+RDGLK Sbjct: 61 EDLKHPDNQLEIGLRANLISIAIWILKECDRIRKRQSNNYQGIIDVTTIIRDGLK 115 >gi|190890385|ref|YP_001976927.1| flagellin synthesis regulator protein [Rhizobium etli CIAT 652] gi|190695664|gb|ACE89749.1| flagellin synthesis regulator protein [Rhizobium etli CIAT 652] gi|327193062|gb|EGE59974.1| flagellin synthesis regulator protein [Rhizobium etli CNPAF512] Length = 115 Score = 124 bits (310), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 60/115 (52%), Positives = 84/115 (73%), Gaps = 1/115 (0%) Query: 1 MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M Q+ Y E +Q+S + ++RE +LDRSI LL++A ++A+EALFYT RVW+ FI Sbjct: 1 MYQFSYAEVMQDSVADAKEREWQVLDRSIELLALARDKDKYGREAIEALFYTRRVWISFI 60 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 +DL DN L +++ NLISI +W+LKEC+RIR+ SN+YQ IIDV +I+RDGLK Sbjct: 61 EDLKHPDNQLDVQLRANLISIAIWILKECDRIRKRLSNNYQGIIDVTTIIRDGLK 115 >gi|13472595|ref|NP_104162.1| flagellar biosynthesis regulatory protein FlaF [Mesorhizobium loti MAFF303099] gi|14023341|dbj|BAB49948.1| flagellar protein; FlaF [Mesorhizobium loti MAFF303099] Length = 115 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 51/115 (44%), Positives = 85/115 (73%), Gaps = 1/115 (0%) Query: 1 MRQYYHETIQESSI-ECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M Q+ + +Q +S+ + + RE +L RSI +LS A + +S +A+EAL +T+RVW +F+ Sbjct: 1 MYQFSYADVQSTSVSDAKDRERELLTRSIDMLSAAAAAGQDSMEAIEALNFTNRVWTIFV 60 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 +DL S DN LP+E++ NLISIGLW+L+E E IR+ ++N+++ +I+V I+RDG++ Sbjct: 61 EDLGSSDNALPKELRANLISIGLWLLREAEDIRQGRTNNFEGLIEVSQIIRDGIQ 115 >gi|260466600|ref|ZP_05812788.1| flagellar FlaF family protein [Mesorhizobium opportunistum WSM2075] gi|259029606|gb|EEW30894.1| flagellar FlaF family protein [Mesorhizobium opportunistum WSM2075] Length = 115 Score = 114 bits (285), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 51/115 (44%), Positives = 84/115 (73%), Gaps = 1/115 (0%) Query: 1 MRQYYHETIQESSI-ECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M Q+ + +Q +S+ + + RE +L RSI +LS A + +S +AVEAL +T+RVW F+ Sbjct: 1 MYQFSYADVQSTSVSDAKDRERELLTRSIDMLSAAAAAGQDSMEAVEALHFTNRVWTTFV 60 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 +DL S DN LP+E++ NLISIGLW+L+E E IR+ ++++++ +I+V I+RDG++ Sbjct: 61 EDLGSSDNALPKELRANLISIGLWLLREAEDIRQGRTDNFEGLIEVSQIIRDGIQ 115 >gi|319781662|ref|YP_004141138.1| flagellar FlaF family protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167550|gb|ADV11088.1| flagellar FlaF family protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 115 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 51/115 (44%), Positives = 83/115 (72%), Gaps = 1/115 (0%) Query: 1 MRQYYHETIQESSI-ECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M Q+ + IQ +S+ + + RE +L RSI +L+ A + S +A+EAL +T+RVW F+ Sbjct: 1 MYQFSYADIQSNSVADAKDRERELLTRSIDMLAAAAVAGHGSMEAIEALHFTNRVWTAFV 60 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 +DL S DN LP+E++ NLISIGLW+L+E E IR+ ++N+++ +I+V I+RDG++ Sbjct: 61 EDLGSSDNALPKELRANLISIGLWLLREAEDIRQGRTNNFEGLIEVSQIIRDGIQ 115 >gi|114706625|ref|ZP_01439526.1| flagellar protein flaF [Fulvimarina pelagi HTCC2506] gi|114538017|gb|EAU41140.1| flagellar protein flaF [Fulvimarina pelagi HTCC2506] Length = 115 Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 49/114 (42%), Positives = 78/114 (68%), Gaps = 1/114 (0%) Query: 1 MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M Q+ Y E Q+++++ R+RE D SI+LL A KS P S+ A+EA++ T +W + + Sbjct: 1 MYQFSYAEVAQDTAVDARERERQAFDHSIALLEKAEKSGPRSRDAIEAIYITRSLWSILV 60 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 +DL S DN LP+E++ LISIGLW++ E E IR KS +++ I+++ ++RDGL Sbjct: 61 EDLGSADNGLPEELRAELISIGLWIMSEAEAIRVGKSTNFKGIVEITRLIRDGL 114 >gi|15887922|ref|NP_353603.1| flagellar biosynthesis regulatory protein FlaF [Agrobacterium tumefaciens str. C58] gi|15155518|gb|AAK86388.1| FLAF protein [Agrobacterium tumefaciens str. C58] Length = 114 Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 55/115 (47%), Positives = 77/115 (66%), Gaps = 2/115 (1%) Query: 1 MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M Q+ Y E +++ + RE L +SI LL A S + + ++EALFYT RVW+ FI Sbjct: 1 MYQFSYAEIMEDGVANAKDRERQALTKSIDLLVEARDS-SSQRHSIEALFYTRRVWIRFI 59 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 +DL DN L E++ NLISI +W+LKECE IR+ +S ++Q IIDV +I+RDGLK Sbjct: 60 EDLKQPDNQLAMELRANLISIAIWILKECELIRKRQSTNFQGIIDVTTIIRDGLK 114 >gi|110632637|ref|YP_672845.1| flagellar biosynthesis regulatory protein FlaF [Mesorhizobium sp. BNC1] gi|110283621|gb|ABG61680.1| flagellar FlaF [Chelativorans sp. BNC1] Length = 115 Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 47/115 (40%), Positives = 80/115 (69%), Gaps = 1/115 (0%) Query: 1 MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M Q+ Y E + +S + + RE +L RSI LL+ A ++ P S++A+EA+ + +RVW + Sbjct: 1 MYQFSYSEVLSDSVADAKDRERQLLTRSIDLLTQAREAGPRSREAIEAILFMNRVWTSLV 60 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 +DL N LP+E++ NLISIGLW+L+E E +R+ +S+++ +I++ I+RDGL+ Sbjct: 61 EDLGDPGNALPKELRANLISIGLWLLREGEEVRQGRSDNFDGLIEISQIIRDGLR 115 >gi|325291965|ref|YP_004277829.1| flagellar biosynthesis regulatory protein FlaF [Agrobacterium sp. H13-3] gi|325059818|gb|ADY63509.1| flagellar biosynthesis regulatory protein FlaF [Agrobacterium sp. H13-3] Length = 114 Score = 107 bits (267), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 53/115 (46%), Positives = 77/115 (66%), Gaps = 2/115 (1%) Query: 1 MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M Q+ Y E +++ + + RE L +SI LL + K + + +EALFYT RVW+ FI Sbjct: 1 MYQFSYAEIMEDGVADAKDRERQALTKSIDLL-VEAKDSSSQRHTIEALFYTRRVWIRFI 59 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 +DL +N L E++ NLISI +W+LKECE IR+ +S ++Q IIDV +I+RDGLK Sbjct: 60 EDLKQPENQLAMELRANLISIAIWILKECELIRKRQSTNFQGIIDVTTIIRDGLK 114 >gi|239834424|ref|ZP_04682752.1| flagellar biosynthesis regulatory protein FlaF [Ochrobactrum intermedium LMG 3301] gi|239822487|gb|EEQ94056.1| flagellar biosynthesis regulatory protein FlaF [Ochrobactrum intermedium LMG 3301] Length = 114 Score = 104 bits (259), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 43/109 (39%), Positives = 75/109 (68%) Query: 5 YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64 Y + + + R+RE + DRSI++L +A ++ S++ ++A ++T+++W I DL S Sbjct: 6 YEDVMTDDMASARERERTLFDRSIAMLELAKENGSGSREGIDATYFTTKLWTTIIDDLGS 65 Query: 65 EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 E+N LP+E+K +IS+G++VLKE ERIR+ +SN Y +I++ +RDGL Sbjct: 66 EENVLPKELKAAIISVGIFVLKEIERIRQGESNDYATLIEITQSIRDGL 114 >gi|225628426|ref|ZP_03786460.1| Protein flaF [Brucella ceti str. Cudo] gi|254706499|ref|ZP_05168327.1| flagellar biosynthesis regulatory protein FlaF [Brucella pinnipedialis M163/99/10] gi|254711216|ref|ZP_05173027.1| flagellar biosynthesis regulatory protein FlaF [Brucella pinnipedialis B2/94] gi|254711815|ref|ZP_05173626.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti M644/93/1] gi|254714884|ref|ZP_05176695.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti M13/05/1] gi|256030155|ref|ZP_05443769.1| flagellar biosynthesis regulatory protein FlaF [Brucella pinnipedialis M292/94/1] gi|256158334|ref|ZP_05456238.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti M490/95/1] gi|256252732|ref|ZP_05458268.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti B1/94] gi|260166793|ref|ZP_05753604.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. F5/99] gi|261216574|ref|ZP_05930855.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti M13/05/1] gi|261219810|ref|ZP_05934091.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti B1/94] gi|261313953|ref|ZP_05953150.1| flagellar biosynthesis regulatory protein FlaF [Brucella pinnipedialis M163/99/10] gi|261318807|ref|ZP_05958004.1| flagellar biosynthesis regulatory protein FlaF [Brucella pinnipedialis B2/94] gi|261319444|ref|ZP_05958641.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti M644/93/1] gi|261756170|ref|ZP_05999879.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. F5/99] gi|265987186|ref|ZP_06099743.1| flagellar biosynthesis regulatory protein FlaF [Brucella pinnipedialis M292/94/1] gi|265996849|ref|ZP_06109406.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti M490/95/1] gi|225616272|gb|EEH13320.1| Protein flaF [Brucella ceti str. Cudo] gi|260918394|gb|EEX85047.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti B1/94] gi|260921663|gb|EEX88231.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti M13/05/1] gi|261292134|gb|EEX95630.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti M644/93/1] gi|261298030|gb|EEY01527.1| flagellar biosynthesis regulatory protein FlaF [Brucella pinnipedialis B2/94] gi|261302979|gb|EEY06476.1| flagellar biosynthesis regulatory protein FlaF [Brucella pinnipedialis M163/99/10] gi|261736154|gb|EEY24150.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. F5/99] gi|262551146|gb|EEZ07307.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti M490/95/1] gi|264659383|gb|EEZ29644.1| flagellar biosynthesis regulatory protein FlaF [Brucella pinnipedialis M292/94/1] Length = 114 Score = 104 bits (259), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 43/109 (39%), Positives = 74/109 (67%) Query: 5 YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64 Y + + + ++RE + DRSI++L +A + S++ ++A ++TS++W I DL S Sbjct: 6 YEDVMNDDMASAKERERMLFDRSIAMLEVARANGAESREGIDAAYFTSKLWTTIIDDLGS 65 Query: 65 EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 E+N LP+E++ +ISIG++VLKE ERIR+ +SN Y +I++ +RDGL Sbjct: 66 EENALPKELRAAIISIGIFVLKEIERIRQGESNDYATLIEITQSIRDGL 114 >gi|90418362|ref|ZP_01226274.1| flagellar protein FlaF [Aurantimonas manganoxydans SI85-9A1] gi|90338034|gb|EAS51685.1| flagellar protein FlaF [Aurantimonas manganoxydans SI85-9A1] Length = 115 Score = 103 bits (258), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 48/115 (41%), Positives = 75/115 (65%), Gaps = 1/115 (0%) Query: 1 MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M Q+ Y E Q+ ++ R+RE LD SI L A P S+ A+EA++ T +W + I Sbjct: 1 MYQFSYAEVAQDIEVDARERERQALDHSIEQLKKADAEGPRSRAAIEAIYTTRSLWALVI 60 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 +DL S DN LP+ ++ LISIGLW+++E E IR KS +++ II++ +++R+GLK Sbjct: 61 EDLASADNGLPEALRAELISIGLWIMREAEAIRLGKSENFKGIIEITTLIREGLK 115 >gi|153011505|ref|YP_001372719.1| flagellar biosynthesis regulatory protein FlaF [Ochrobactrum anthropi ATCC 49188] gi|151563393|gb|ABS16890.1| flagellar FlaF family protein [Ochrobactrum anthropi ATCC 49188] Length = 114 Score = 103 bits (256), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 43/109 (39%), Positives = 74/109 (67%) Query: 5 YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64 Y + + + ++RE + DRSI++L A + S++A++A ++T+++W I DL S Sbjct: 6 YEDVMNDDMASAKERERALFDRSIAMLEAAKANGSGSREAIDAAYFTTKLWTTIIDDLGS 65 Query: 65 EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 E+N LP+E+K +IS+G++VLKE ERIR+ +SN Y +I++ +RDGL Sbjct: 66 EENVLPKELKAAIISVGIFVLKEIERIRQGESNDYATLIEITQSIRDGL 114 >gi|23500851|ref|NP_700291.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis 1330] gi|62317954|ref|YP_223807.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus bv. 1 str. 9-941] gi|83269931|ref|YP_419222.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis biovar Abortus 2308] gi|148558679|ref|YP_001258001.1| flagellar biosynthesis regulatory protein FlaF [Brucella ovis ATCC 25840] gi|161621179|ref|YP_001595065.1| flagellar biosynthesis regulatory protein FlaF [Brucella canis ATCC 23365] gi|163845454|ref|YP_001623109.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis ATCC 23445] gi|189023205|ref|YP_001932946.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus S19] gi|225686882|ref|YP_002734854.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis ATCC 23457] gi|237817499|ref|ZP_04596490.1| Protein flaF [Brucella abortus str. 2308 A] gi|254691614|ref|ZP_05154868.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus bv. 6 str. 870] gi|254695090|ref|ZP_05156918.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus bv. 3 str. Tulya] gi|254698186|ref|ZP_05160014.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus bv. 2 str. 86/8/59] gi|254699259|ref|ZP_05161087.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis bv. 5 str. 513] gi|254702380|ref|ZP_05164208.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis bv. 3 str. 686] gi|254720776|ref|ZP_05182587.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. 83/13] gi|254731631|ref|ZP_05190209.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus bv. 4 str. 292] gi|256015895|ref|YP_003105904.1| flagellar biosynthesis regulatory protein FlaF [Brucella microti CCM 4915] gi|256059807|ref|ZP_05450002.1| flagellar biosynthesis regulatory protein FlaF [Brucella neotomae 5K33] gi|256112179|ref|ZP_05453100.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis bv. 3 str. Ether] gi|256256801|ref|ZP_05462337.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus bv. 9 str. C68] gi|256261981|ref|ZP_05464513.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis bv. 2 str. 63/9] gi|260544139|ref|ZP_05819960.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus NCTC 8038] gi|260568717|ref|ZP_05839186.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis bv. 4 str. 40] gi|260757245|ref|ZP_05869593.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus bv. 6 str. 870] gi|260759390|ref|ZP_05871738.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus bv. 4 str. 292] gi|260762633|ref|ZP_05874965.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus bv. 2 str. 86/8/59] gi|260883049|ref|ZP_05894663.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus bv. 9 str. C68] gi|261215441|ref|ZP_05929722.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus bv. 3 str. Tulya] gi|261323787|ref|ZP_05962984.1| flagellar biosynthesis regulatory protein FlaF [Brucella neotomae 5K33] gi|261749699|ref|ZP_05993408.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis bv. 5 str. 513] gi|261752943|ref|ZP_05996652.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis bv. 3 str. 686] gi|265985834|ref|ZP_06098569.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. 83/13] gi|265993606|ref|ZP_06106163.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis bv. 3 str. Ether] gi|294852965|ref|ZP_06793637.1| flagellar protein FlaF [Brucella sp. NVSL 07-0026] gi|297250154|ref|ZP_06933855.1| flaF, flagellar biosynthesis regulatory protein FlaF [Brucella abortus bv. 5 str. B3196] gi|306840133|ref|ZP_07472918.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. NF 2653] gi|306841279|ref|ZP_07473990.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. BO2] gi|23464515|gb|AAN34296.1| flagellar protein FlaF, putative [Brucella suis 1330] gi|62198147|gb|AAX76446.1| hypothetical FlaF [Brucella abortus bv. 1 str. 9-941] gi|82940205|emb|CAJ13261.1| flagellar protein FlaF, putative [Brucella melitensis biovar Abortus 2308] gi|148369964|gb|ABQ62836.1| putative flagellar protein FlaF [Brucella ovis ATCC 25840] gi|161337990|gb|ABX64294.1| flagellar FlaF family protein [Brucella canis ATCC 23365] gi|163676177|gb|ABY40287.1| Hypothetical protein, conserved [Brucella suis ATCC 23445] gi|189021779|gb|ACD74500.1| flagellar protein FlaF, putative [Brucella abortus S19] gi|225642987|gb|ACO02900.1| Protein flaF [Brucella melitensis ATCC 23457] gi|237787334|gb|EEP61551.1| Protein flaF [Brucella abortus str. 2308 A] gi|255998555|gb|ACU50242.1| flagellar biosynthesis regulatory protein FlaF [Brucella microti CCM 4915] gi|260097410|gb|EEW81284.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus NCTC 8038] gi|260155382|gb|EEW90463.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis bv. 4 str. 40] gi|260669708|gb|EEX56648.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus bv. 4 str. 292] gi|260673054|gb|EEX59875.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus bv. 2 str. 86/8/59] gi|260677353|gb|EEX64174.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus bv. 6 str. 870] gi|260872577|gb|EEX79646.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus bv. 9 str. C68] gi|260917048|gb|EEX83909.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus bv. 3 str. Tulya] gi|261299767|gb|EEY03264.1| flagellar biosynthesis regulatory protein FlaF [Brucella neotomae 5K33] gi|261739452|gb|EEY27378.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis bv. 5 str. 513] gi|261742696|gb|EEY30622.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis bv. 3 str. 686] gi|262764476|gb|EEZ10508.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis bv. 3 str. Ether] gi|263091465|gb|EEZ16001.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis bv. 2 str. 63/9] gi|264664426|gb|EEZ34687.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. 83/13] gi|294818620|gb|EFG35620.1| flagellar protein FlaF [Brucella sp. NVSL 07-0026] gi|297174023|gb|EFH33387.1| flaF, flagellar biosynthesis regulatory protein FlaF [Brucella abortus bv. 5 str. B3196] gi|306288681|gb|EFM60012.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. BO2] gi|306404778|gb|EFM61072.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. NF 2653] gi|326411300|gb|ADZ68364.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis M28] gi|326554589|gb|ADZ89228.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis M5-90] Length = 114 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 43/109 (39%), Positives = 73/109 (66%) Query: 5 YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64 Y + + + ++RE + DRSI++L A + S++ ++A ++TS++W I DL S Sbjct: 6 YEDVMNDDMASAKERERMLFDRSIAMLEAARANGAESREGIDAAYFTSKLWTTIIDDLGS 65 Query: 65 EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 E+N LP+E++ +ISIG++VLKE ERIR+ +SN Y +I++ +RDGL Sbjct: 66 EENALPKELRAAIISIGIFVLKEIERIRQGESNDYATLIEITQSIRDGL 114 >gi|17988506|ref|NP_541139.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis bv. 1 str. 16M] gi|256042863|ref|ZP_05445809.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis bv. 1 str. Rev.1] gi|260564100|ref|ZP_05834585.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis bv. 1 str. 16M] gi|265989298|ref|ZP_06101855.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis bv. 1 str. Rev.1] gi|17984298|gb|AAL53403.1| flaf protein [Brucella melitensis bv. 1 str. 16M] gi|260151743|gb|EEW86836.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis bv. 1 str. 16M] gi|262999967|gb|EEZ12657.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis bv. 1 str. Rev.1] Length = 114 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 42/109 (38%), Positives = 73/109 (66%) Query: 5 YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64 Y + + + ++RE + DR+I++L A + S++ ++A ++TS++W I DL S Sbjct: 6 YEDVMNDDMASAKERERMLFDRTIAMLEAARANGAESREGIDAAYFTSKLWTTIIDDLGS 65 Query: 65 EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 E+N LP+E++ +ISIG++VLKE ERIR+ +SN Y +I++ +RDGL Sbjct: 66 EENALPKELRAAIISIGIFVLKEIERIRQGESNDYATLIEITQSIRDGL 114 >gi|306845416|ref|ZP_07477990.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. BO1] gi|306274159|gb|EFM55975.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. BO1] Length = 114 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 42/109 (38%), Positives = 73/109 (66%) Query: 5 YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64 Y + + + ++RE + DRSI++L A + S++ ++A ++TS++W I DL S Sbjct: 6 YEDVMNDDMASAKERERMLFDRSIAMLEAARANGAESREGIDAAYFTSKLWTTIIDDLGS 65 Query: 65 EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 E+N LP+E++ +ISIG++VLKE ERIR+ +SN Y +I++ ++DGL Sbjct: 66 EENALPKELRAAIISIGIFVLKEIERIRQGESNDYATLIEITQSIQDGL 114 >gi|300024585|ref|YP_003757196.1| flagellar FlaF family protein [Hyphomicrobium denitrificans ATCC 51888] gi|299526406|gb|ADJ24875.1| flagellar FlaF family protein [Hyphomicrobium denitrificans ATCC 51888] Length = 114 Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 43/109 (39%), Positives = 75/109 (68%) Query: 5 YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64 Y ET+ +S+ R+ E +++S+S+L A K+ NS++AV+A+ + +R+W ++DLV Sbjct: 6 YEETLSDSAGRKRENERLAIEQSVSMLRSAEKAGANSREAVDAICFLNRLWSFLLEDLVK 65 Query: 65 EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 +N LP +++ NLISIG+W+LKE + I KS ++ +IDV S++ +GL Sbjct: 66 PENALPDDIRANLISIGIWMLKEADAISSGKSKNFAGLIDVSSVIAEGL 114 >gi|227820878|ref|YP_002824848.1| flagellar biosynthesis regulatory protein FlaF [Sinorhizobium fredii NGR234] gi|227339877|gb|ACP24095.1| predicted flagellar protein FlaF [Sinorhizobium fredii NGR234] Length = 115 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 53/115 (46%), Positives = 80/115 (69%), Gaps = 1/115 (0%) Query: 1 MRQYYHETIQESSIECRKREHW-ILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M Q+ + I E + K W +L+RSI+LL A + S++A+EA++YT RVW+ FI Sbjct: 1 MYQFAYAEIMEEGVAVSKDREWQVLNRSIALLEAAKQQKGYSREAIEAIYYTRRVWIRFI 60 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 +DL + DN L E++ NLISIG+W+L E E+IR+ S+++Q IID+ +I+RDGLK Sbjct: 61 EDLRAPDNQLNDELRANLISIGIWILNETEKIRKRDSSNFQGIIDITTIIRDGLK 115 >gi|150395506|ref|YP_001325973.1| flagellar biosynthesis regulatory protein FlaF [Sinorhizobium medicae WSM419] gi|150027021|gb|ABR59138.1| flagellar FlaF family protein [Sinorhizobium medicae WSM419] Length = 115 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 52/115 (45%), Positives = 84/115 (73%), Gaps = 1/115 (0%) Query: 1 MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M Q+ Y E ++E + RE +LDRSI+LL A + +++A+EA+++T R+W+ FI Sbjct: 1 MYQFAYAEIMEEGVAVSKDREKQVLDRSIALLQAAKEKNGYTREAIEAVYFTRRLWIRFI 60 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 +DL + DN L +E++ NLISIG+W+L E E+IR+ +S+++Q IID+ +I+RDGLK Sbjct: 61 EDLRAPDNQLNEELRANLISIGIWILNETEKIRKRESSNFQGIIDITTIIRDGLK 115 >gi|15964435|ref|NP_384788.1| flagellar biosynthesis regulatory protein FlaF [Sinorhizobium meliloti 1021] gi|307318932|ref|ZP_07598363.1| flagellar FlaF family protein [Sinorhizobium meliloti AK83] gi|10998531|gb|AAG25961.1|AF300968_3 FlaF [Sinorhizobium meliloti] gi|15073612|emb|CAC45254.1| Putative flagellin synthesis regulator [Sinorhizobium meliloti 1021] gi|306895346|gb|EFN26101.1| flagellar FlaF family protein [Sinorhizobium meliloti AK83] Length = 115 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 52/115 (45%), Positives = 84/115 (73%), Gaps = 1/115 (0%) Query: 1 MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M Q+ Y E ++E + RE +LDRSI+LL A + +++A+EA+++T R+W+ FI Sbjct: 1 MYQFAYAEIMEEGVAVSKDREKQVLDRSIALLQAAKEKDGYTREAIEAVYFTRRLWIRFI 60 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 +DL + DN L +E++ NLISIG+W+L E E+IR+ +S+++Q IID+ +I+RDGLK Sbjct: 61 EDLRAPDNQLNEELRANLISIGIWILNETEKIRKRESSNFQGIIDITTIIRDGLK 115 >gi|217976243|ref|YP_002360390.1| flagellar biosynthesis regulatory protein FlaF [Methylocella silvestris BL2] gi|217501619|gb|ACK49028.1| flagellar FlaF family protein [Methylocella silvestris BL2] Length = 115 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 43/110 (39%), Positives = 72/110 (65%) Query: 5 YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64 Y E+++ S ECR+RE LD ++ LL A S A EAL + R+W I+DL+S Sbjct: 6 YAESLESSPGECRERERRALDHALQLLEKARHDGVGSAAAAEALHFLCRLWKALIEDLIS 65 Query: 65 EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 +N LP ++ +L+S+G+WVL+E + IR KS++++ +I++ S +R+GL+ Sbjct: 66 PENDLPDVLRGDLVSVGIWVLREADSIREEKSSNFRGLIEICSAIRNGLR 115 >gi|163758035|ref|ZP_02165123.1| putative flagellin synthesis regulator protein [Hoeflea phototrophica DFL-43] gi|162284324|gb|EDQ34607.1| putative flagellin synthesis regulator protein [Hoeflea phototrophica DFL-43] Length = 115 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 50/115 (43%), Positives = 80/115 (69%), Gaps = 1/115 (0%) Query: 1 MRQYYHETIQESSIECRKREHWI-LDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M Q+ + +QE + + ++ SISLL+ A S++A+EA+++ SR+WV F+ Sbjct: 1 MYQFSYADVQEDGVAEAREREREAINHSISLLTAAKAKGVESREAIEAVYFVSRLWVRFV 60 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 +DL S +N L +E++ NLISIG+W++KE ERIR+ +SN++Q IID+ I+RDGLK Sbjct: 61 EDLASPENQLEEELRANLISIGIWIIKESERIRKRESNNFQGIIDISIIIRDGLK 115 >gi|296445193|ref|ZP_06887153.1| flagellar FlaF family protein [Methylosinus trichosporium OB3b] gi|296257367|gb|EFH04434.1| flagellar FlaF family protein [Methylosinus trichosporium OB3b] Length = 115 Score = 94.4 bits (233), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 43/112 (38%), Positives = 73/112 (65%) Query: 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQD 61 R Y +T Q+SS R RE +L+R+I LL++A P S+++ EA R+W++F+ D Sbjct: 3 RHLYAQTAQDSSAVARGRERDVLERAIRLLAVAKVKGPRSRESFEATDNLRRLWLLFVDD 62 Query: 62 LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 L S+ N LP+ ++ +LISIGLWV++E + I K +++ +I++ ++ DGL Sbjct: 63 LSSDGNALPEALRASLISIGLWVMREVDAIDSGKCDNFDGLIEINQMIADGL 114 >gi|307311577|ref|ZP_07591218.1| flagellar FlaF family protein [Sinorhizobium meliloti BL225C] gi|306899594|gb|EFN30223.1| flagellar FlaF family protein [Sinorhizobium meliloti BL225C] Length = 115 Score = 93.6 bits (231), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 51/115 (44%), Positives = 83/115 (72%), Gaps = 1/115 (0%) Query: 1 MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M Q+ Y E ++E + RE +LDRSI+LL A + +++A+ A+++T R+W+ FI Sbjct: 1 MYQFAYAEIMEEGVAVSKDREKQVLDRSIALLQAAKEKDGYTREAIAAVYFTRRLWIRFI 60 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 +DL + DN L +E++ NLISIG+W+L E E+IR+ +S+++Q IID+ +I+RDGLK Sbjct: 61 EDLRAPDNQLNEELRANLISIGIWILNETEKIRKRESSNFQGIIDITTIIRDGLK 115 >gi|254505115|ref|ZP_05117266.1| Flagellar protein FlaF [Labrenzia alexandrii DFL-11] gi|222441186|gb|EEE47865.1| Flagellar protein FlaF [Labrenzia alexandrii DFL-11] Length = 116 Score = 93.6 bits (231), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 47/109 (43%), Positives = 69/109 (63%) Query: 5 YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64 Y E + I+ R EH + I+ L+ AH+ S +AV+ALFYT RVW F+++L Sbjct: 6 YAEVMDNLCIDDRLNEHKAMCIIIAKLTAAHEKGVRSPEAVDALFYTRRVWGFFMENLAD 65 Query: 65 EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 + N LP E + NLIS+G+WVLKE E +R+ + + DII++ SI+RD L Sbjct: 66 DANQLPDETRANLISVGIWVLKEAEALRQWEREDFSDIIEINSIIRDSL 114 >gi|12330683|gb|AAG52880.1| FlaF [Brucella abortus] Length = 104 Score = 93.6 bits (231), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 39/99 (39%), Positives = 66/99 (66%) Query: 5 YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64 Y + + + ++RE + DRSI++L A + S++ ++A ++TS++W I DL S Sbjct: 6 YEDVMNDDMASAKERERMLFDRSIAMLEAARANGAESREGIDAAYFTSKLWTTIIDDLGS 65 Query: 65 EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDII 103 E+N LP+E++ +ISIG++VLKE ERIR+ +SN Y +I Sbjct: 66 EENALPKELRAAIISIGIFVLKEIERIRQGESNDYATLI 104 >gi|304392490|ref|ZP_07374430.1| flagellar biosynthesis regulatory protein FlaF [Ahrensia sp. R2A130] gi|303295120|gb|EFL89480.1| flagellar biosynthesis regulatory protein FlaF [Ahrensia sp. R2A130] Length = 117 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 46/115 (40%), Positives = 69/115 (60%), Gaps = 1/115 (0%) Query: 1 MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M Q+ Y ET S R E +L +SI LL +A + SK AVEA+++T+R+W FI Sbjct: 3 MGQFGYAETNANSGKAARAGERALLRQSIDLLKLAKEQGTQSKAAVEAVYFTNRLWTAFI 62 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 +DL E+N L ++ NLISIG+ +L+ RIR + +I++V I+ DGL+ Sbjct: 63 EDLGGEENRLEPTLRANLISIGISILRSTGRIREGDETAIDEIVEVSGIILDGLR 117 >gi|328545488|ref|YP_004305597.1| flagellar protein flaF [polymorphum gilvum SL003B-26A1] gi|326415229|gb|ADZ72292.1| Flagellar protein flaF [Polymorphum gilvum SL003B-26A1] Length = 116 Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 45/110 (40%), Positives = 71/110 (64%) Query: 5 YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64 Y +TI + ++ R E +D I+ L A + S++AVEA+F T R+W FI+ L Sbjct: 6 YAQTIDDLCVDQRSDERQAMDIVIAQLERAREKGLKSREAVEAIFNTRRLWSFFIESLAD 65 Query: 65 EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 + N LP ++ +LISIG+WV+KE ER+R+ ++ + +IDV ++VRDGLK Sbjct: 66 DANELPPSLRADLISIGIWVIKEVERVRQRETETLDALIDVNAMVRDGLK 115 >gi|115523196|ref|YP_780107.1| flagellar biosynthesis regulatory protein FlaF [Rhodopseudomonas palustris BisA53] gi|115517143|gb|ABJ05127.1| flagellar FlaF family protein [Rhodopseudomonas palustris BisA53] Length = 115 Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 44/109 (40%), Positives = 64/109 (58%) Query: 5 YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64 Y I++S+ E R RE+ LD I LL + EAL + ++W F+QDL S Sbjct: 6 YDNMIEDSAHEARAREYQALDHGIDLLKRLQNGDLQPFEQTEALLFMRKLWTFFVQDLSS 65 Query: 65 EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 N LP+ ++ LISIGLWV+KE +RIR+ K+ D+I + +I+RD L Sbjct: 66 PKNGLPESLRAELISIGLWVIKEADRIRQEKATDIDDLIAINTIIRDSL 114 >gi|118589963|ref|ZP_01547367.1| flagellar protein flaF [Stappia aggregata IAM 12614] gi|118437460|gb|EAV44097.1| flagellar protein flaF [Stappia aggregata IAM 12614] Length = 116 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 45/109 (41%), Positives = 66/109 (60%) Query: 5 YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64 Y E + + + R EH + I L++A + S +AV+ALFYT R+W F++ L Sbjct: 6 YAEVMDDLCSDQRLNEHEAMTIVIGKLNVAKERGVKSPEAVDALFYTRRLWSYFLEHLAD 65 Query: 65 EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 E N LP E + NLIS+G+WVLKE E +R+ + + DII + SI+RD L Sbjct: 66 EANELPIETRANLISVGIWVLKEVEALRQWEQEDFSDIIQINSIIRDSL 114 >gi|90422627|ref|YP_530997.1| flagellar biosynthesis regulatory protein FlaF [Rhodopseudomonas palustris BisB18] gi|90104641|gb|ABD86678.1| flagellar FlaF [Rhodopseudomonas palustris BisB18] Length = 115 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/109 (40%), Positives = 62/109 (56%) Query: 5 YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64 Y I++S E R RE L I LL+ S VEAL Y R+W F+ DL S Sbjct: 6 YDTVIEDSGQEARARERLALSHGIDLLTRLQSGDLRSPDDVEALLYIRRLWTFFVLDLSS 65 Query: 65 EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 N LP++++ +LISIG WV+KE +RIR+ K+ ++I V ++RD L Sbjct: 66 PRNGLPEKLRADLISIGFWVIKEADRIRQEKATDIAELIAVNVVIRDSL 114 >gi|121602017|ref|YP_989380.1| flagellar biosynthesis regulatory protein FlaF [Bartonella bacilliformis KC583] gi|120614194|gb|ABM44795.1| Flaf protein [Bartonella bacilliformis KC583] Length = 122 Score = 84.7 bits (208), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 37/109 (33%), Positives = 68/109 (62%) Query: 5 YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64 Y + +++ ++ R+RE + DR I LL A + P + +A EA+ + ++WV+ I+DL Sbjct: 6 YEDVMEDDAMSARERERSLFDRCIKLLQDAKEKGPGTYEANEAVQFARKLWVILIEDLGQ 65 Query: 65 EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 +N LPQ +K +LISIG ++LKE +R+ + + ++++ +RDGL Sbjct: 66 AENALPQTLKASLISIGFFILKEIQRLDEGEIADFDVLVEISESIRDGL 114 >gi|312115277|ref|YP_004012873.1| flagellar FlaF family protein [Rhodomicrobium vannielii ATCC 17100] gi|311220406|gb|ADP71774.1| flagellar FlaF family protein [Rhodomicrobium vannielii ATCC 17100] Length = 115 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 48/114 (42%), Positives = 66/114 (57%), Gaps = 4/114 (3%) Query: 5 YHETIQESSIE----CRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQ 60 YH QE+ R E + RSI+LL ++ S +A+EAL YT R+WV FI+ Sbjct: 2 YHSPYQEALATDVRMARSTERASILRSINLLQRGAEAGSRSAEAIEALLYTKRLWVFFIE 61 Query: 61 DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 L DN LP +++ +LISIG+ VL+ E IRR +S + IIDV V +GLK Sbjct: 62 QLGLPDNRLPHKLRADLISIGIAVLRRIEAIRRGESKDFGFIIDVSRSVAEGLK 115 >gi|319403981|emb|CBI77569.1| Flaf protein [Bartonella rochalimae ATCC BAA-1498] Length = 122 Score = 84.0 bits (206), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 36/109 (33%), Positives = 67/109 (61%) Query: 5 YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64 Y + +++ ++ R+RE ++ DR I LL A P S +A +A+ + ++WV+ I+DL Sbjct: 6 YEDVMEDDAMSARERERFLFDRCIKLLLAAKAKGPGSCEAKDAVQFARKLWVILIEDLGQ 65 Query: 65 EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 N LPQ +K +LISIG ++LKE +++ + + ++++ +RDGL Sbjct: 66 AANALPQALKASLISIGFFILKEIQKLDEGEITDFDVLVEISESIRDGL 114 >gi|319898659|ref|YP_004158752.1| Flaf protein [Bartonella clarridgeiae 73] gi|319402623|emb|CBI76168.1| Flaf protein [Bartonella clarridgeiae 73] Length = 122 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 36/109 (33%), Positives = 67/109 (61%) Query: 5 YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64 Y + +++ ++ R+RE ++ DR I LL A P + +A EA+ + ++WV+ I+DL Sbjct: 6 YEDVMEDDAMSARERERFLFDRCIKLLLDAKMKGPGTCEAKEAVQFARKLWVILIEDLGQ 65 Query: 65 EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 N LPQ +K +LISIG ++LKE +++ + + ++++ +RDGL Sbjct: 66 AANALPQALKASLISIGFFILKEIQKLDEGEITDFDVLVEISESIRDGL 114 >gi|319406997|emb|CBI80634.1| Flaf protein [Bartonella sp. 1-1C] Length = 122 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 35/109 (32%), Positives = 67/109 (61%) Query: 5 YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64 Y + +++ ++ R+RE ++ DR I LL A P + +A +A+ + ++WV+ I+DL Sbjct: 6 YEDVMEDDAMSARERERFLFDRCIKLLLAAKAKGPGTCEAKDAVQFARKLWVILIEDLGQ 65 Query: 65 EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 N LPQ +K +LISIG ++LKE +++ + + ++++ +RDGL Sbjct: 66 AANALPQALKASLISIGFFILKEIQKLDEGEITDFDVLVEISESIRDGL 114 >gi|254473396|ref|ZP_05086793.1| flagellar FlaF [Pseudovibrio sp. JE062] gi|211957512|gb|EEA92715.1| flagellar FlaF [Pseudovibrio sp. JE062] Length = 115 Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 40/109 (36%), Positives = 68/109 (62%) Query: 5 YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64 Y ET+++SS + R +E + ++ L A + S +A +AL R+W + I DL S Sbjct: 6 YAETLEDSSEDRRGQERELFSLVVAQLQAADEHGSASSEAAQALTSVHRLWSILISDLGS 65 Query: 65 EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 +N LP E++ +LISIG+W +K+ + IR KS+ ++ +I++ +VRDGL Sbjct: 66 PENGLPAELRADLISIGIWCVKQADLIREGKSDDFKSLIEINELVRDGL 114 >gi|319405424|emb|CBI79043.1| Flaf protein [Bartonella sp. AR 15-3] Length = 122 Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 35/109 (32%), Positives = 67/109 (61%) Query: 5 YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64 Y + +++ ++ R+RE ++ DR I LL A P + +A +A+ + ++WV+ I+DL Sbjct: 6 YEDIMEDDAMSARERERFLFDRCIKLLLAAKAKGPGTCEAKDAVQFARKLWVILIEDLGQ 65 Query: 65 EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 N LPQ +K +LISIG ++LKE +++ + + ++++ +RDGL Sbjct: 66 AANALPQALKASLISIGFFILKEIQKLDEGEITDFDVLVEISESIRDGL 114 >gi|170744546|ref|YP_001773201.1| flagellar biosynthesis regulatory protein FlaF [Methylobacterium sp. 4-46] gi|168198820|gb|ACA20767.1| flagellar FlaF family protein [Methylobacterium sp. 4-46] Length = 115 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 39/113 (34%), Positives = 68/113 (60%) Query: 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQD 61 R Y+E ++++ CR+RE DR+++LL A + + EA+ + R+W V I+D Sbjct: 3 RFSYNEILEDAPDLCRERERAAFDRALALLRKADAADAKFEDRGEAVSFLQRLWDVLIED 62 Query: 62 LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 L++ +N LP+ ++ +L+SIGLW ++E R S +IDV + +RDGL+ Sbjct: 63 LLNPENGLPEPLRTDLVSIGLWSMREASEALRLPERSLAPLIDVNTAIRDGLR 115 >gi|323136998|ref|ZP_08072078.1| flagellar FlaF family protein [Methylocystis sp. ATCC 49242] gi|322397759|gb|EFY00281.1| flagellar FlaF family protein [Methylocystis sp. ATCC 49242] Length = 115 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 39/112 (34%), Positives = 67/112 (59%) Query: 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQD 61 +Q Y E ES R +E L+ +I L++A P + +A EA Y R+W +F++D Sbjct: 3 QQRYAEIASESGKNARAKEREALEIAIKKLAVAKTRGPLTPEAFEATNYLRRLWAIFMED 62 Query: 62 LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 L +++N LP+ ++ +LISIGLW+ +E + I S ++ +I+V ++ DGL Sbjct: 63 LSNDENGLPESLRASLISIGLWIRREADLIDTGGSVNFDGLIEVNQLIADGL 114 >gi|158422274|ref|YP_001523566.1| flagellar biosynthesis regulatory protein FlaF [Azorhizobium caulinodans ORS 571] gi|158329163|dbj|BAF86648.1| flagellar FlaF protein [Azorhizobium caulinodans ORS 571] Length = 115 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 36/110 (32%), Positives = 67/110 (60%) Query: 5 YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64 Y E +++SS E R RE DR++ LL A + ++ + A+ + R+W + I+DL Sbjct: 6 YAEILEDSSTESRARERDAFDRALELLVSAESAGLDTPECRAAMLFLQRLWGLLIRDLTD 65 Query: 65 EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 +N L E++ +L+SIGLW ++E +R+ S+++ +I++ +RDGL+ Sbjct: 66 ANNELAPELRADLVSIGLWNIREADRVLEQSSSNFSGLININRTIRDGLQ 115 >gi|27381966|ref|NP_773495.1| flagellar biosynthesis regulatory protein FlaF [Bradyrhizobium japonicum USDA 110] gi|27355136|dbj|BAC52120.1| fliC [Bradyrhizobium japonicum USDA 110] Length = 117 Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 39/111 (35%), Positives = 64/111 (57%) Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDL 62 + Y ++ES + R RE L I L K + + V++L Y R+W +FI+DL Sbjct: 7 EAYEAVVEESGYQERGRERQALSLGIDRLERIEKGPFSFEDLVQSLLYVRRLWTIFIEDL 66 Query: 63 VSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 +N LP +++ ++ISIGLWV+KE +R+R KS +I++ ++RD L Sbjct: 67 SHPENGLPDKLRADIISIGLWVIKEADRLREEKSGDVMQLIEINRLIRDAL 117 >gi|319409166|emb|CBI82810.1| Flaf protein [Bartonella schoenbuchensis R1] Length = 122 Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 35/109 (32%), Positives = 65/109 (59%) Query: 5 YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64 Y + +++ ++ R+RE + DR I L A P S + EA+ + ++W++ I+DL Sbjct: 6 YEDVMEDDAMSARERERSLFDRCIKLFLDAKAKGPGSHEVNEAVQFARKLWIILIEDLGQ 65 Query: 65 EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 +N LP E+K +LISIG ++LKE +++ K + ++++ +RDGL Sbjct: 66 AENALPPELKASLISIGFFILKEIQKLDEGKVADFDVLVEISESIRDGL 114 >gi|170748122|ref|YP_001754382.1| flagellar biosynthesis regulatory protein FlaF [Methylobacterium radiotolerans JCM 2831] gi|170654644|gb|ACB23699.1| flagellar FlaF family protein [Methylobacterium radiotolerans JCM 2831] Length = 119 Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 37/112 (33%), Positives = 67/112 (59%) Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDL 62 + Y ET+ +S R+RE DR+I L+ A + +++ EA + R+W + I DL Sbjct: 8 EAYRETMGDSPAIGREREREAFDRAIELMKRADAAEASAELRWEATSFLQRLWSMLIDDL 67 Query: 63 VSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 + N LP +++ +LISIGLW + ++I R ++ ++ +I V +++RDGL+ Sbjct: 68 ANPANSLPPQLRADLISIGLWNMSRSDQILRGDASGFEPLIYVNTLIRDGLR 119 >gi|182680454|ref|YP_001834600.1| flagellar biosynthesis regulatory protein FlaF [Beijerinckia indica subsp. indica ATCC 9039] gi|182636337|gb|ACB97111.1| flagellar FlaF family protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 91 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 61/91 (67%) Query: 24 LDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLW 83 +D ++ LL A +S +EAL Y R+W + ++DL + DN LP+ ++ +L+S+G+W Sbjct: 1 MDHALDLLENARNKGASSIACIEALSYLCRLWTLLMEDLANPDNDLPEVLRADLLSVGIW 60 Query: 84 VLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 +LKE + I++ S++ +I++ +++RDGLK Sbjct: 61 ILKETDAIQKGTSDNLVGLIEICTLIRDGLK 91 >gi|188579928|ref|YP_001923373.1| flagellar biosynthesis regulatory protein FlaF [Methylobacterium populi BJ001] gi|179343426|gb|ACB78838.1| flagellar FlaF family protein [Methylobacterium populi BJ001] Length = 116 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 60/114 (52%), Gaps = 1/114 (0%) Query: 2 RQYYHETIQESSIECRKREHWILDRSISLL-SIAHKSLPNSKQAVEALFYTSRVWVVFIQ 60 R Y E ++++ R+RE DR++ LL + + + A+ +W V I Sbjct: 3 RLSYSEIMEDAPDLGREREREAFDRALGLLRTAEAQGAGAGAERNSAVGSIQELWNVLIS 62 Query: 61 DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 DL+ +N LP+ ++ +L++IGLW ++E + S +I+V + +RDGL+ Sbjct: 63 DLLDPENGLPEGLRADLVAIGLWNMREAGEVLSTPERSLSALIEVNTSIRDGLR 116 >gi|254559271|ref|YP_003066366.1| flagellar protein FlaF [Methylobacterium extorquens DM4] gi|254266549|emb|CAX22313.1| Flagellar protein FlaF [Methylobacterium extorquens DM4] Length = 116 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 59/114 (51%), Gaps = 1/114 (0%) Query: 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAH-KSLPNSKQAVEALFYTSRVWVVFIQ 60 R Y E ++++ R+RE DR++S L A + A+ +W V I Sbjct: 3 RLSYAEIMEDAPDLGRERERDAFDRALSQLRTAEAQGAAAGPARSAAVGSIQDLWNVLIA 62 Query: 61 DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 DL+ +N LP+ ++ +L++IGLW ++E + S +I+V + +RDGL+ Sbjct: 63 DLLDPENALPESLRADLVAIGLWNMREAGEVLSTPDRSLAALIEVNTSIRDGLQ 116 >gi|163850126|ref|YP_001638169.1| flagellar biosynthesis regulatory protein FlaF [Methylobacterium extorquens PA1] gi|218528730|ref|YP_002419546.1| flagellar biosynthesis regulatory protein FlaF [Methylobacterium chloromethanicum CM4] gi|240137260|ref|YP_002961729.1| Flagellar protein FlaF [Methylobacterium extorquens AM1] gi|163661731|gb|ABY29098.1| flagellar FlaF family protein [Methylobacterium extorquens PA1] gi|218521033|gb|ACK81618.1| flagellar FlaF family protein [Methylobacterium chloromethanicum CM4] gi|240007226|gb|ACS38452.1| Flagellar protein FlaF [Methylobacterium extorquens AM1] Length = 116 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 59/114 (51%), Gaps = 1/114 (0%) Query: 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAH-KSLPNSKQAVEALFYTSRVWVVFIQ 60 R Y E ++++ R+RE DR++S L A + A+ +W V I Sbjct: 3 RLSYAEIMEDAPDLGRERERDAFDRALSQLRTAEAQGAAAGPARSAAVGSIQDLWNVLIA 62 Query: 61 DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 DL+ +N LP+ ++ +L++IGLW ++E + S +I+V + +RDGL+ Sbjct: 63 DLLDPENALPESLRADLVAIGLWNMREAGEVLSAPDRSLAALIEVNTSIRDGLQ 116 >gi|218507949|ref|ZP_03505827.1| flagellar biosynthesis regulatory protein FlaF [Rhizobium etli Brasil 5] Length = 98 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 41/61 (67%), Gaps = 1/61 (1%) Query: 1 MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M Q+ Y E +Q+S + ++RE +LDRSI LL++A ++A+E LFYT RVW+ FI Sbjct: 1 MYQFSYAEVMQDSVADAKEREWQVLDRSIELLALARDKDTYGREAIEVLFYTRRVWISFI 60 Query: 60 Q 60 + Sbjct: 61 R 61 >gi|296531759|ref|ZP_06894581.1| possible flaF protein [Roseomonas cervicalis ATCC 49957] gi|296267898|gb|EFH13703.1| possible flaF protein [Roseomonas cervicalis ATCC 49957] Length = 141 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/97 (35%), Positives = 47/97 (48%), Gaps = 5/97 (5%) Query: 20 EHWILDRSISLLSIAHKSLPNSKQAV--EALFYTSRVWVVFIQDLVSEDNHLPQEVKLNL 77 E+ +L R+ SLL A + PN+ + EA+ VW F DL +E+N K L Sbjct: 38 EYRVLARATSLLEAAQR--PNAGPSALPEAIHENRMVWTAFAADLAAEENGWDMVTKGRL 95 Query: 78 ISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 +S+ WV E ER+ R S + DV V GLK Sbjct: 96 LSLARWVFAESERVLRG-GRSPHALCDVNRAVMAGLK 131 >gi|163794169|ref|ZP_02188142.1| flagellar FlaF family protein [alpha proteobacterium BAL199] gi|159180783|gb|EDP65302.1| flagellar FlaF family protein [alpha proteobacterium BAL199] Length = 143 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 21/68 (30%), Positives = 44/68 (64%), Gaps = 4/68 (5%) Query: 43 QAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDI 102 Q ++AL + ++VW F++D+ +E N LP+E++ ++S+G+WV +E + ++ DI Sbjct: 51 QIMDALNWNNQVWDAFVEDVGTEGNMLPRELRAAIVSLGIWVTRETALV----TSGEGDI 106 Query: 103 IDVISIVR 110 +I++ R Sbjct: 107 DALIAVNR 114 >gi|86139474|ref|ZP_01058043.1| flagellar protein FlaF, putative [Roseobacter sp. MED193] gi|85823977|gb|EAQ44183.1| flagellar protein FlaF, putative [Roseobacter sp. MED193] Length = 128 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 7/102 (6%) Query: 19 REHWILDRSISLLSIAHKSLPNSKQA------VEALFYTSRVWVVFIQDLVSEDNHLPQE 72 +E+ I+ RS L AHK +K EAL ++W +F DL S DN LPQ+ Sbjct: 24 KEYDIVARSTQNLLAAHKVASANKGTEGFKVLTEALHKNRKMWNIFTADLASSDNQLPQD 83 Query: 73 VKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 VK NL + + + ++ K+N + +I++ V GL+ Sbjct: 84 VKDNLFYLAEFTRQHTSKVLSRKAN-VRALIEINMAVLRGLR 124 >gi|163794166|ref|ZP_02188139.1| flagellar FlaF family protein [alpha proteobacterium BAL199] gi|159180780|gb|EDP65299.1| flagellar FlaF family protein [alpha proteobacterium BAL199] Length = 124 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 23/80 (28%), Positives = 43/80 (53%) Query: 12 SSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQ 71 ++ R E+ +L + L A + ++ + A+ +VW VF+ DL DN LPQ Sbjct: 15 ATQNGRDLEYRLLAQVTGALIKARDGMATLQERLNAILRNEKVWGVFLADLNHPDNGLPQ 74 Query: 72 EVKLNLISIGLWVLKECERI 91 ++K + S+ L+V+KE + + Sbjct: 75 QLKGGIASLALFVMKETQLV 94 >gi|209963551|ref|YP_002296466.1| flagellar protein FlaF, putative [Rhodospirillum centenum SW] gi|209957017|gb|ACI97653.1| flagellar protein FlaF, putative [Rhodospirillum centenum SW] Length = 124 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 2/80 (2%) Query: 5 YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64 Y ++++++ + R+ EH + + + L + + P++ + A+ R+W + DL Sbjct: 11 YRQSMRDT-VSPRQLEHRVFSQVTAELEVCTRQ-PDAFATIRAVDRNRRLWGALVTDLAQ 68 Query: 65 EDNHLPQEVKLNLISIGLWV 84 DN LP +K LIS+GLWV Sbjct: 69 PDNLLPDALKAGLISLGLWV 88 >gi|307945681|ref|ZP_07661017.1| protein FlaF [Roseibium sp. TrichSKD4] gi|307771554|gb|EFO30779.1| protein FlaF [Roseibium sp. TrichSKD4] Length = 97 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 1/70 (1%) Query: 46 EALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKEC-ERIRRNKSNSYQDIID 104 +AL Y ++W + + + +N LPQE+K N+ S+G++V K+ E + + N +I Sbjct: 24 DALTYNRKLWTILVTSATNGENPLPQEIKNNIASLGVFVFKQTMEAMTDEEGNKLNSLIS 83 Query: 105 VISIVRDGLK 114 + + +GL+ Sbjct: 84 INRAIAEGLR 93 >gi|92116893|ref|YP_576622.1| flagellar biosynthesis regulatory protein FlaF [Nitrobacter hamburgensis X14] gi|91799787|gb|ABE62162.1| flagellar FlaF [Nitrobacter hamburgensis X14] Length = 121 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 1/112 (0%) Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDL 62 Q Y T Q SS +L + L I + K AL + R+W +F+ Sbjct: 6 QAYARTAQTSSSPREIEAQALLKAARQLQEIQNNWTGPDKNMHNALLFNRRLWSIFMSAA 65 Query: 63 VSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNS-YQDIIDVISIVRDGL 113 S+DN P EV+ N+ +IG++V+K+ ++ N + + +ID+ + GL Sbjct: 66 DSDDNQQPLEVRQNIANIGVFVMKQTIDMQMNPDPAKLKSLIDINCNLAAGL 117 >gi|295689336|ref|YP_003593029.1| flagellar FlaF family protein [Caulobacter segnis ATCC 21756] gi|295431239|gb|ADG10411.1| flagellar FlaF family protein [Caulobacter segnis ATCC 21756] Length = 120 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/85 (25%), Positives = 44/85 (51%), Gaps = 1/85 (1%) Query: 29 SLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKEC 88 +L+ + + + ++AL + +VW D DN LP E++ ++IS+ LWV + Sbjct: 30 ALMEASQAPADDFAKRIDALDWNRKVWSALATDCSLPDNQLPMELRASIISLSLWVSRHS 89 Query: 89 ERIRRNKSNSYQDIIDVISIVRDGL 113 + R K ++ +I++ I+ GL Sbjct: 90 SAVMR-KEEEFEPLIEINRIIMQGL 113 >gi|254500444|ref|ZP_05112595.1| Flagellar protein FlaF [Labrenzia alexandrii DFL-11] gi|222436515|gb|EEE43194.1| Flagellar protein FlaF [Labrenzia alexandrii DFL-11] Length = 125 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 2/88 (2%) Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAV--EALFYTSRVWVVFIQ 60 Q Y +T Q + + R+ E +L ++ + L + + A +AL Y ++W V + Sbjct: 7 QAYQKTSQAAPVSPRELEATLLMKAAARLQLIKDEWDDLSLAEVDDALIYNRKLWTVLVT 66 Query: 61 DLVSEDNHLPQEVKLNLISIGLWVLKEC 88 SE++ LP E+K N+ S+G++V K+ Sbjct: 67 SATSEESSLPLEIKNNIGSLGVFVFKQT 94 >gi|209967004|ref|YP_002299919.1| flagellar protein FlaF, putative [Rhodospirillum centenum SW] gi|209960470|gb|ACJ01107.1| flagellar protein FlaF, putative [Rhodospirillum centenum SW] Length = 138 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 16/48 (33%), Positives = 30/48 (62%) Query: 39 PNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLK 86 P+ + AL ++W+ + DL + +N LP+E+K LIS+G+W ++ Sbjct: 38 PDPTARIRALHRNHQLWLTLVSDLATPENPLPEELKGRLISLGMWSMR 85 >gi|83858827|ref|ZP_00952349.1| flaF protein [Oceanicaulis alexandrii HTCC2633] gi|83853650|gb|EAP91502.1| flaF protein [Oceanicaulis alexandrii HTCC2633] Length = 118 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 1/72 (1%) Query: 42 KQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQD 101 +Q V AL RVW F D S N+LP ++ +IS+ ++V KE R +++ + Sbjct: 43 RQRVAALDRNRRVWSAFAADCASSHNNLPDSLRAGIISLSIFVSKETSAAMRGETD-VET 101 Query: 102 IIDVISIVRDGL 113 +ID+ + GL Sbjct: 102 LIDINRTIMQGL 113 >gi|126738587|ref|ZP_01754292.1| flagellar protein FlaF, putative [Roseobacter sp. SK209-2-6] gi|126720386|gb|EBA17092.1| flagellar protein FlaF, putative [Roseobacter sp. SK209-2-6] Length = 128 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/106 (25%), Positives = 56/106 (52%), Gaps = 9/106 (8%) Query: 16 CRKREHWILDRSISLLSIAHKSLPNSKQAVE-------ALFYTSRVWVVFIQDLVSEDNH 68 + E+ ++ R+ L AHK + N+K E AL ++W +F DL++++N Sbjct: 21 TKDNEYEVVARATHKLLAAHK-VANAKSGPEGFKVLASALHTNRKMWNIFEVDLLAKENQ 79 Query: 69 LPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 LPQEVK NL+ + + + ++ K+ + ++++ + + GL+ Sbjct: 80 LPQEVKTNLLYLAEFTRQHTSKVLSRKA-GIKPLVEINTAIMRGLR 124 >gi|154252991|ref|YP_001413815.1| flagellar FlaF family protein [Parvibaculum lavamentivorans DS-1] gi|154156941|gb|ABS64158.1| flagellar FlaF family protein [Parvibaculum lavamentivorans DS-1] Length = 125 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 2/109 (1%) Query: 5 YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAV--EALFYTSRVWVVFIQDL 62 Y + ++ + R+ E IL R+ L + N + +AL Y R+W VF Sbjct: 8 YANASRMATKDPREFEATILTRAAGQLQRIRDNWTNETASALRDALLYNRRIWTVFAASA 67 Query: 63 VSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRD 111 +++ LP+E+K N+ ++ +++ K I ++ + Q + +I I R+ Sbjct: 68 AEKEHPLPREIKQNIANLAIFIFKRTSEIESSREPAPQLLDTLIMINRE 116 >gi|114570513|ref|YP_757193.1| flagellar biosynthesis regulatory protein FlaF [Maricaulis maris MCS10] gi|114340975|gb|ABI66255.1| flagellar FlaF family protein [Maricaulis maris MCS10] Length = 126 Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 3/80 (3%) Query: 36 KSLP--NSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRR 93 KSLP + + +A+ + RVW D S+DN LP+ ++ +IS+ ++V K+ R Sbjct: 35 KSLPIESLQDRAQAIDWNRRVWSNLALDCASQDNKLPEALRAAIISLSIFVSKQGSHAMR 94 Query: 94 NKSNSYQDIIDVISIVRDGL 113 N + D++D+ V GL Sbjct: 95 NP-EAIDDLVDINRTVMQGL 113 >gi|161485648|ref|NP_420272.2| flagellar biosynthesis regulatory protein FlaF [Caulobacter crescentus CB15] gi|221234463|ref|YP_002516899.1| flagellar biosynthesis regulatory protein FlaF [Caulobacter crescentus NA1000] gi|220963635|gb|ACL94991.1| flagellar biosynthesis regulatory protein flaF [Caulobacter crescentus NA1000] Length = 120 Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust. Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 1/69 (1%) Query: 45 VEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIID 104 ++AL + +VW D +N LP E++ ++IS+ LWV + + R K ++ +I+ Sbjct: 46 IDALDWNRKVWSALATDCALPENQLPMELRASIISLSLWVGRHSSAVMR-KEEDFEPLIE 104 Query: 105 VISIVRDGL 113 + ++ GL Sbjct: 105 INRMIMQGL 113 >gi|83944194|ref|ZP_00956650.1| flaF protein [Sulfitobacter sp. EE-36] gi|83845061|gb|EAP82942.1| flaF protein [Sulfitobacter sp. EE-36] Length = 133 Score = 42.4 bits (98), Expect = 0.021, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Query: 46 EALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDV 105 + L+ RVW+ F DL +DN L +++ LIS+ LWV + + N + +ID+ Sbjct: 57 DTLWENQRVWLTFKADLAEKDNGLTADLRAALISLALWVENHTKAVLSGSKN-VKPLIDI 115 Query: 106 ISIVRDGL 113 + DGL Sbjct: 116 NRSIIDGL 123 >gi|170751769|ref|YP_001758029.1| flagellar FlaF family protein [Methylobacterium radiotolerans JCM 2831] gi|170658291|gb|ACB27346.1| flagellar FlaF family protein [Methylobacterium radiotolerans JCM 2831] Length = 123 Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 2/79 (2%) Query: 12 SSIECRKREHWILDRSISLLSIAHKSLPNSKQA--VEALFYTSRVWVVFIQDLVSEDNHL 69 S++ R+ E +L ++ L A + L + EAL + RVW + + S+ N L Sbjct: 14 SALSPREAESAVLLKAAQKLIGASQGLASGDAGRINEALTFNQRVWTLLTSEATSDVNPL 73 Query: 70 PQEVKLNLISIGLWVLKEC 88 P +VK + +G++VL+ C Sbjct: 74 PADVKQGVGRLGVFVLQSC 92 >gi|328543142|ref|YP_004303251.1| flagellar protein FlaF [polymorphum gilvum SL003B-26A1] gi|326412888|gb|ADZ69951.1| Flagellar protein FlaF [Polymorphum gilvum SL003B-26A1] Length = 97 Score = 42.4 bits (98), Expect = 0.025, Method: Compositional matrix adjust. Identities = 16/41 (39%), Positives = 27/41 (65%) Query: 46 EALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLK 86 +AL Y ++W V + ++HLPQ++K NL S+G++V K Sbjct: 24 DALAYNRKLWTVLVTSATGAESHLPQDLKNNLASLGVFVFK 64 >gi|120266|sp|P21295|FLAF_CAUCR RecName: Full=Protein flaF gi|40421|emb|CAA33231.1| unnamed protein product [Caulobacter crescentus CB15] gi|13422828|gb|AAK23440.1| flaF protein [Caulobacter crescentus CB15] Length = 102 Score = 42.4 bits (98), Expect = 0.025, Method: Compositional matrix adjust. Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 1/69 (1%) Query: 45 VEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIID 104 ++AL + +VW D +N LP E++ ++IS+ LWV + + R K ++ +I+ Sbjct: 28 IDALDWNRKVWSALATDCALPENQLPMELRASIISLSLWVGRHSSAVMR-KEEDFEPLIE 86 Query: 105 VISIVRDGL 113 + ++ GL Sbjct: 87 INRMIMQGL 95 >gi|146341919|ref|YP_001206967.1| flagellar biosynthesis regulatory protein FlaF [Bradyrhizobium sp. ORS278] gi|146194725|emb|CAL78750.1| conserved hypothetical protein; putative FlaF protein [Bradyrhizobium sp. ORS278] Length = 96 Score = 41.6 bits (96), Expect = 0.038, Method: Compositional matrix adjust. Identities = 18/69 (26%), Positives = 42/69 (60%), Gaps = 1/69 (1%) Query: 46 EALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNS-YQDIID 104 +AL + R+W +F+ + +EDN P +++ N+ +IG++V+K+ ++ + + + +ID Sbjct: 24 KALLFNRRLWTIFMSAMEAEDNPNPLDIRQNIANIGVFVMKQTIEMQMDPDPAKLKSLID 83 Query: 105 VISIVRDGL 113 + + GL Sbjct: 84 INCHIAAGL 92 >gi|89068720|ref|ZP_01156106.1| hypothetical protein OG2516_06766 [Oceanicola granulosus HTCC2516] gi|89045683|gb|EAR51745.1| hypothetical protein OG2516_06766 [Oceanicola granulosus HTCC2516] Length = 132 Score = 41.6 bits (96), Expect = 0.042, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 19/123 (15%) Query: 5 YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVE-----------ALFYTSR 53 Y TI+ES R+ E +L + + L A ++ + A E AL Sbjct: 6 YKRTIRESETP-RQIERRVLAQLTARLEDAAQAYDTAATAPERIAILAGGLRDALAENVT 64 Query: 54 VWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVR--- 110 VW+ F DL S N LP +++ LIS+ LW+ K+ RI Q ++ + ++ R Sbjct: 65 VWLHFRYDLSSPANELPPALRVQLISLSLWIEKQTNRIL----GGGQGLVQLAAVNRSVV 120 Query: 111 DGL 113 DGL Sbjct: 121 DGL 123 >gi|118588728|ref|ZP_01546136.1| putative flagellar protein FlaF [Stappia aggregata IAM 12614] gi|118438714|gb|EAV45347.1| putative flagellar protein FlaF [Stappia aggregata IAM 12614] Length = 94 Score = 41.2 bits (95), Expect = 0.046, Method: Compositional matrix adjust. Identities = 17/70 (24%), Positives = 39/70 (55%), Gaps = 1/70 (1%) Query: 46 EALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERI-RRNKSNSYQDIID 104 +AL Y ++W + + S ++ LPQ++K N+ ++G++V K+ + + N +I Sbjct: 24 DALVYNRKLWTILVTSATSAESELPQDIKNNIATLGVFVFKQTMTVMTTDDENKLDTLIS 83 Query: 105 VISIVRDGLK 114 + + +GL+ Sbjct: 84 INRSIAEGLR 93 >gi|114798597|ref|YP_758996.1| putative flagellar biosynthesis regulatory protein [Hyphomonas neptunium ATCC 15444] gi|114738771|gb|ABI76896.1| putative flagellar biosynthesis regulatory protein [Hyphomonas neptunium ATCC 15444] Length = 128 Score = 41.2 bits (95), Expect = 0.055, Method: Compositional matrix adjust. Identities = 28/110 (25%), Positives = 55/110 (50%), Gaps = 3/110 (2%) Query: 5 YHETIQESSIECRKREHWILDR-SISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63 Y + Q ++ R E+ + ++ + L S+ N+ +A++ ++W + DL+ Sbjct: 9 YGQVTQRTAT-GRALEYAVFEQITRDLQSVHDDGGANTGAWGDAIYRNLQLWTIIATDLL 67 Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 S +N LP E K LIS+ +V + +I + + +DII+V + GL Sbjct: 68 SAENALPDETKAGLISLSEFVRRTSMKI-LSGTEGLEDIIEVNRTIMAGL 116 >gi|85715037|ref|ZP_01046022.1| putative flagellar protein FlaF [Nitrobacter sp. Nb-311A] gi|85698234|gb|EAQ36106.1| putative flagellar protein FlaF [Nitrobacter sp. Nb-311A] Length = 121 Score = 40.4 bits (93), Expect = 0.074, Method: Compositional matrix adjust. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 1/69 (1%) Query: 46 EALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNS-YQDIID 104 +AL + R+W +F+ SE N P EV+ N+ +IG++V+K+ ++ N + +ID Sbjct: 49 KALLFNRRLWSIFMSAADSESNPQPLEVRQNIANIGVFVMKQTVDMQLNPDPAKLTALID 108 Query: 105 VISIVRDGL 113 + + GL Sbjct: 109 INCNLAAGL 117 >gi|83955106|ref|ZP_00963762.1| flaF protein [Sulfitobacter sp. NAS-14.1] gi|83840435|gb|EAP79608.1| flaF protein [Sulfitobacter sp. NAS-14.1] Length = 133 Score = 40.4 bits (93), Expect = 0.081, Method: Compositional matrix adjust. Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Query: 46 EALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDV 105 + L+ RVW+ F DL +DN L +++ LIS+ LWV + + N + +ID+ Sbjct: 57 DTLWENQRVWLTFKADLAEKDNGLTADLRAALISLALWVENHTKAVLSGSKN-VKPLIDI 115 Query: 106 ISIVRDGL 113 + +GL Sbjct: 116 NRSIINGL 123 >gi|114765256|ref|ZP_01444388.1| flaF protein [Pelagibaca bermudensis HTCC2601] gi|114542391|gb|EAU45419.1| flaF protein [Roseovarius sp. HTCC2601] Length = 145 Score = 40.4 bits (93), Expect = 0.092, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Query: 54 VWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 +W DL E+N LP E++ NL+SI +WV + C + + +IDV + GL Sbjct: 65 LWSRLRTDLTDENNQLPAELRANLLSIAMWVDRTCG-VVIGGGDGLPALIDVNQNILGGL 123 >gi|167646850|ref|YP_001684513.1| flagellar biosynthesis regulatory protein FlaF [Caulobacter sp. K31] gi|167349280|gb|ABZ72015.1| flagellar FlaF family protein [Caulobacter sp. K31] Length = 120 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 20/85 (23%), Positives = 44/85 (51%), Gaps = 1/85 (1%) Query: 29 SLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKEC 88 +L++ + + ++AL + RVW D +N LP +++ ++IS+ LWV + Sbjct: 30 ALMAASEAPADDIATRIDALDWNRRVWSALATDCSLPENTLPVQLRASIISLSLWVGRHS 89 Query: 89 ERIRRNKSNSYQDIIDVISIVRDGL 113 + R K ++ +I++ ++ GL Sbjct: 90 SAVMR-KEEDFEPLIEINRMIMQGL 113 >gi|222053750|ref|YP_002536112.1| flagellar FlaF family protein [Geobacter sp. FRC-32] gi|221563039|gb|ACM19011.1| flagellar FlaF family protein [Geobacter sp. FRC-32] Length = 128 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 30/113 (26%), Positives = 59/113 (52%), Gaps = 4/113 (3%) Query: 6 HETIQESSIECRKREHWILDRSISLLSIAHKS--LPN-SKQAVEALFYTSRVWVVFIQDL 62 + IQ+ ++ R+ E +L R+ +L + P+ K+ EAL + ++W F +L Sbjct: 9 YANIQKEALTGRELEASVLTRAAQMLKHCQDNWNAPDREKKLQEALKFNQKIWSFFQAEL 68 Query: 63 VSEDNHLPQEVKLNLISIGLWVLKEC-ERIRRNKSNSYQDIIDVISIVRDGLK 114 DN LP++++ +++S+ L+V K E I +S +ID+ + GL+ Sbjct: 69 SVPDNPLPKKLREDILSLSLFVDKRIFEIIAFPESEKLTIVIDINMNIAAGLR 121 >gi|197104849|ref|YP_002130226.1| Flagellar biosynthesis regulator FlaF [Phenylobacterium zucineum HLK1] gi|196478269|gb|ACG77797.1| Flagellar biosynthesis regulator FlaF [Phenylobacterium zucineum HLK1] Length = 104 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 1/85 (1%) Query: 29 SLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKEC 88 +L+ A + K ++AL + RVW V D N LP+E++ ++IS+ +WV K Sbjct: 12 ALMEAAKLPADDLKGRMDALDWNRRVWSVLGADCQQTGNGLPRELRASIISLSIWVGKHT 71 Query: 89 ERIRRNKSNSYQDIIDVISIVRDGL 113 + R + + +I++ ++ GL Sbjct: 72 SLVIRQQ-EEIEPLIEINRMIMQGL 95 >gi|75675299|ref|YP_317720.1| flagellar biosynthesis regulatory protein FlaF [Nitrobacter winogradskyi Nb-255] gi|74420169|gb|ABA04368.1| putative flagellar protein FlaF [Nitrobacter winogradskyi Nb-255] Length = 121 Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust. Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 1/112 (0%) Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDL 62 Q Y T Q SS +L + L + K +AL + R+W +F+ Sbjct: 6 QAYARTAQTSSSPREIEAQALLKAARQLREVQDKWEGPDNDMHKALLFNRRLWSIFMSAA 65 Query: 63 VSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNS-YQDIIDVISIVRDGL 113 S+ N P EV+ N+ +IG++V+K+ ++ N + +ID+ + GL Sbjct: 66 DSDSNPQPLEVRQNIANIGVFVMKQTVDMQLNPDPAKLTALIDINCNLAAGL 117 >gi|99082813|ref|YP_614967.1| flagellar biosynthesis regulatory protein FlaF [Ruegeria sp. TM1040] gi|99039093|gb|ABF65705.1| FlaF protein [Ruegeria sp. TM1040] Length = 123 Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust. Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 2/100 (2%) Query: 16 CRKREHWILDRSISLLSIA-HKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVK 74 R E+ IL R + +A K K V A+ ++W +F DL E N LP E+K Sbjct: 21 ARNTEYEILARITHRMIVADSKGSDGFKDLVAAVSDNRKLWTLFTSDLAKEGNKLPTELK 80 Query: 75 LNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 L + + + ++ K+ S Q ++++ + + GL+ Sbjct: 81 QRLFHLARFTREHTSKVLARKA-SVQPLVEINTAIMRGLR 119 >gi|91976151|ref|YP_568810.1| flagellar biosynthesis regulatory protein FlaF [Rhodopseudomonas palustris BisB5] gi|91682607|gb|ABE38909.1| flagellar FlaF [Rhodopseudomonas palustris BisB5] Length = 122 Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust. Identities = 14/43 (32%), Positives = 28/43 (65%) Query: 46 EALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKEC 88 EAL + ++W +F+ D + +DN E++ N+ +IG++VL + Sbjct: 50 EALMFNRKLWSIFVSDAMRDDNPQSIEIRQNIANIGVFVLSQS 92 >gi|315500093|ref|YP_004088896.1| flagellar flaf family protein [Asticcacaulis excentricus CB 48] gi|315418105|gb|ADU14745.1| flagellar FlaF family protein [Asticcacaulis excentricus CB 48] Length = 136 Score = 38.5 bits (88), Expect = 0.35, Method: Compositional matrix adjust. Identities = 26/112 (23%), Positives = 54/112 (48%), Gaps = 3/112 (2%) Query: 3 QYYHETIQESSIECRKREHWILDR-SISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQD 61 Q Y +T Q S + R+ E+ + + + +L+ A + ++AL + R+W V D Sbjct: 4 QAYQKTAQRSE-DPRQTEYRLFGQVTRALMEAAELDRSEVSRRMDALDWNRRLWSVLGTD 62 Query: 62 LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 N LP+ ++ ++S+ +WV + + R + +I+V ++ GL Sbjct: 63 CALPGNGLPETLRAQIVSLSIWVNRHTSAVMRGQ-EEIAPLIEVNRLIMQGL 113 >gi|163738068|ref|ZP_02145484.1| flagellar protein FlaF, putative [Phaeobacter gallaeciensis BS107] gi|161388684|gb|EDQ13037.1| flagellar protein FlaF, putative [Phaeobacter gallaeciensis BS107] Length = 123 Score = 38.5 bits (88), Expect = 0.35, Method: Compositional matrix adjust. Identities = 19/85 (22%), Positives = 45/85 (52%), Gaps = 1/85 (1%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECE 89 +++ A K P + AL ++W +F ++ S N LP E+K L+S+G + + Sbjct: 36 MVAAAQKGKPGFTELAAALTDNRKLWSIFSVEVASPGNPLPDELKAQLLSLGEFTHQHTS 95 Query: 90 RIRRNKSNSYQDIIDVISIVRDGLK 114 ++ K++ + ++++ + + GL+ Sbjct: 96 KVLARKAD-VRLLVEINTAIMRGLR 119 >gi|90423003|ref|YP_531373.1| flagellar biosynthesis regulatory protein FlaF [Rhodopseudomonas palustris BisB18] gi|90105017|gb|ABD87054.1| flagellar FlaF [Rhodopseudomonas palustris BisB18] Length = 121 Score = 38.1 bits (87), Expect = 0.37, Method: Compositional matrix adjust. Identities = 13/46 (28%), Positives = 29/46 (63%) Query: 47 ALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIR 92 AL + ++W +F+ D +S+ N ++ N+ +IG++VL +C ++ Sbjct: 50 ALIFNRKLWSIFVSDAISDANPEAIAIRQNIANIGIFVLTQCAALQ 95 >gi|316932810|ref|YP_004107792.1| flagellar FlaF family protein [Rhodopseudomonas palustris DX-1] gi|315600524|gb|ADU43059.1| flagellar FlaF family protein [Rhodopseudomonas palustris DX-1] Length = 122 Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust. Identities = 18/69 (26%), Positives = 40/69 (57%), Gaps = 1/69 (1%) Query: 46 EALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIR-RNKSNSYQDIID 104 EAL + ++W +F+ + + +DN E++ N+ +IG++VL + ++ + + Q +ID Sbjct: 50 EALMFNRKLWSIFVSEAMRDDNPQSIEIRQNIANIGVFVLSQSSALQIKPEVERLQALID 109 Query: 105 VISIVRDGL 113 + + GL Sbjct: 110 INRNIAAGL 118 >gi|163742536|ref|ZP_02149922.1| flagellar protein FlaF, putative [Phaeobacter gallaeciensis 2.10] gi|161384121|gb|EDQ08504.1| flagellar protein FlaF, putative [Phaeobacter gallaeciensis 2.10] Length = 88 Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust. Identities = 19/85 (22%), Positives = 45/85 (52%), Gaps = 1/85 (1%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECE 89 +++ A K P + AL ++W +F ++ S N LP E+K L+S+G + + Sbjct: 1 MVAAAQKGKPGFTELAAALTDNRKLWSIFSVEVASPGNPLPDELKAQLLSLGEFTHQHTS 60 Query: 90 RIRRNKSNSYQDIIDVISIVRDGLK 114 ++ K++ + ++++ + + GL+ Sbjct: 61 KVLARKAD-VRLLVEINTAIMRGLR 84 >gi|259418039|ref|ZP_05741958.1| flagellar biosynthesis regulatory protein FlaF [Silicibacter sp. TrichCH4B] gi|259346945|gb|EEW58759.1| flagellar biosynthesis regulatory protein FlaF [Silicibacter sp. TrichCH4B] Length = 123 Score = 38.1 bits (87), Expect = 0.47, Method: Compositional matrix adjust. Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 2/100 (2%) Query: 16 CRKREHWILDRSISLLSIAH-KSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVK 74 R E+ IL R + +A+ K K V A+ ++W +F DL + N LP E+K Sbjct: 21 ARNTEYEILARITHRMIVANGKGSDGFKDLVAAVSDNRKLWTLFTSDLAKDGNKLPDELK 80 Query: 75 LNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 L + + + ++ K+ S Q ++++ + + GL+ Sbjct: 81 QRLFHLARFTREHSSKVLARKA-SVQPLVEINTAIMRGLR 119 >gi|39936974|ref|NP_949250.1| flagellar biosynthesis regulatory protein FlaF [Rhodopseudomonas palustris CGA009] gi|192292802|ref|YP_001993407.1| flagellar biosynthesis regulatory protein FlaF [Rhodopseudomonas palustris TIE-1] gi|39650831|emb|CAE29354.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009] gi|192286551|gb|ACF02932.1| flagellar FlaF family protein [Rhodopseudomonas palustris TIE-1] Length = 122 Score = 37.7 bits (86), Expect = 0.61, Method: Compositional matrix adjust. Identities = 17/69 (24%), Positives = 40/69 (57%), Gaps = 1/69 (1%) Query: 46 EALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIR-RNKSNSYQDIID 104 EAL + ++W +F+ + + +DN E++ N+ +IG++V+ + ++ + + Q +ID Sbjct: 50 EALLFNRKLWSIFVTEAMRDDNPQSIEIRQNIANIGVFVMSQSSALQIKPEVERLQALID 109 Query: 105 VISIVRDGL 113 + + GL Sbjct: 110 INRNIAAGL 118 >gi|163744337|ref|ZP_02151697.1| flaF protein [Oceanibulbus indolifex HEL-45] gi|161381155|gb|EDQ05564.1| flaF protein [Oceanibulbus indolifex HEL-45] Length = 134 Score = 37.4 bits (85), Expect = 0.64, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 21/39 (53%) Query: 46 EALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWV 84 +AL+ R W DL N +P +K +LISI LWV Sbjct: 57 DALYENQRFWSALRYDLAEPGNTMPDALKASLISIALWV 95 >gi|254475812|ref|ZP_05089198.1| flagellar protein FlaF, putative [Ruegeria sp. R11] gi|214030055|gb|EEB70890.1| flagellar protein FlaF, putative [Ruegeria sp. R11] Length = 123 Score = 37.4 bits (85), Expect = 0.70, Method: Compositional matrix adjust. Identities = 18/85 (21%), Positives = 48/85 (56%), Gaps = 1/85 (1%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECE 89 +++ A K P K+ VEAL ++W +F ++ + +N LP+++K L+ + + + Sbjct: 36 MVAAAQKGRPGFKELVEALKDNRKLWSIFADEVANPENPLPEDLKSQLLYLREFTNQHTS 95 Query: 90 RIRRNKSNSYQDIIDVISIVRDGLK 114 ++ K++ + ++++ + + GL+ Sbjct: 96 KVMARKAD-VRMLVEINTAIMRGLR 119 >gi|254465480|ref|ZP_05078891.1| flagellar protein FlaF, putative [Rhodobacterales bacterium Y4I] gi|206686388|gb|EDZ46870.1| flagellar protein FlaF, putative [Rhodobacterales bacterium Y4I] Length = 123 Score = 37.4 bits (85), Expect = 0.74, Method: Compositional matrix adjust. Identities = 19/85 (22%), Positives = 43/85 (50%), Gaps = 1/85 (1%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECE 89 L++ A K + +AL ++W +F DL + N LP +K NL + + + Sbjct: 36 LITAAQKGSDGFNELAQALNDNRKLWSIFTADLAMKSNPLPDNLKQNLFELAEFTRQHTS 95 Query: 90 RIRRNKSNSYQDIIDVISIVRDGLK 114 ++ + K+N + ++++ + + GL+ Sbjct: 96 KVLQRKAN-VRPLVEINTAILRGLR 119 >gi|86750907|ref|YP_487403.1| flagellar biosynthesis regulatory protein FlaF [Rhodopseudomonas palustris HaA2] gi|86573935|gb|ABD08492.1| Flagellar FlaF [Rhodopseudomonas palustris HaA2] Length = 122 Score = 37.0 bits (84), Expect = 0.86, Method: Compositional matrix adjust. Identities = 13/42 (30%), Positives = 27/42 (64%) Query: 47 ALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKEC 88 AL + ++W +F+ D + +DN E++ N+ +IG++VL + Sbjct: 51 ALMFNRKLWSIFVSDAMRDDNPQTLEIRQNIANIGVFVLSQS 92 >gi|27380953|ref|NP_772482.1| flagellar biosynthesis regulatory protein FlaF [Bradyrhizobium japonicum USDA 110] gi|27354119|dbj|BAC51107.1| bll5842 [Bradyrhizobium japonicum USDA 110] Length = 122 Score = 37.0 bits (84), Expect = 0.91, Method: Compositional matrix adjust. Identities = 16/76 (21%), Positives = 45/76 (59%), Gaps = 1/76 (1%) Query: 39 PNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKS-N 97 P S+Q ++AL + ++W +F+ + + ++N P +V+ + +I ++VL + ++ + + Sbjct: 43 PLSEQTMQALMFNRKLWTIFLSEAMRDNNPQPIDVRQKIANISVFVLSQTAALQMSPQFD 102 Query: 98 SYQDIIDVISIVRDGL 113 ++ +I++ + GL Sbjct: 103 HFRPLIEINRNIAAGL 118 >gi|144897700|emb|CAM74564.1| Flagellar FlaF [Magnetospirillum gryphiswaldense MSR-1] Length = 145 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 16/64 (25%), Positives = 37/64 (57%) Query: 17 RKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLN 76 R+ E W L + +S+A K ++ + A+ R+W +F +L E++ LP +++++ Sbjct: 21 RQTEAWALTEAARRMSLAQKEGVATEDLLVAVRLNWRLWTIFQAELSGEESALPDQMRMD 80 Query: 77 LISI 80 ++S+ Sbjct: 81 MLSL 84 >gi|83594188|ref|YP_427940.1| putative flagellar protein FlaF [Rhodospirillum rubrum ATCC 11170] gi|83577102|gb|ABC23653.1| putative flagellar protein FlaF [Rhodospirillum rubrum ATCC 11170] Length = 104 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%) Query: 36 KSLPNSKQAV-EALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWV 84 ++ PN K A +AL + +W + D+ N LP E+K N++S+ L+V Sbjct: 14 RTKPNDKTAFSQALRFNHLLWTIIQADITEPANTLPPELKANIMSLSLFV 63 >gi|115523546|ref|YP_780457.1| flagellar biosynthesis regulatory protein FlaF [Rhodopseudomonas palustris BisA53] gi|115517493|gb|ABJ05477.1| flagellar FlaF family protein [Rhodopseudomonas palustris BisA53] Length = 121 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 18/69 (26%), Positives = 39/69 (56%), Gaps = 1/69 (1%) Query: 46 EALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIR-RNKSNSYQDIID 104 EAL + ++W +F+ D + ++N E++ N+ +IG++VL + + + + Q +ID Sbjct: 49 EALMFNRKLWSLFVSDALRDENPESIEIRQNIANIGIFVLTQSAALALKPEVERLQALID 108 Query: 105 VISIVRDGL 113 + + GL Sbjct: 109 INRNIAAGL 117 >gi|304321142|ref|YP_003854785.1| flagellar protein FlaF [Parvularcula bermudensis HTCC2503] gi|303300044|gb|ADM09643.1| flagellar protein FlaF, putative [Parvularcula bermudensis HTCC2503] Length = 127 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 20/84 (23%), Positives = 45/84 (53%), Gaps = 1/84 (1%) Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNS-KQAVEALFYTSRVWVVFIQD 61 ++ + +++S+ R+ E +L + + ++ A S P ++ V A+ +W I D Sbjct: 6 EHGYAQVRKSTASGREVEIQLLTKIAAEMANADPSTPEGFRELVTAVHRNMEMWTALIVD 65 Query: 62 LVSEDNHLPQEVKLNLISIGLWVL 85 L+ E+N + Q +K+ L+ +G + L Sbjct: 66 LLQEENKIDQTLKVGLLKLGQFSL 89 >gi|288962698|ref|YP_003452992.1| FliL protein [Azospirillum sp. B510] gi|288914964|dbj|BAI76448.1| FliL protein [Azospirillum sp. B510] Length = 132 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 1/93 (1%) Query: 5 YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64 YH+TI E + RK E+ + R L + S +AL+ +W DL+ Sbjct: 6 YHQTIAECD-DPRKIEYRVFLRITLALEQNRDADWRSAALKDALWRNLELWNALRADLLE 64 Query: 65 EDNHLPQEVKLNLISIGLWVLKECERIRRNKSN 97 + N LP+ ++ L+S+ V + +R+ R + Sbjct: 65 DGNALPEALRAGLVSLSFAVNRNTQRVLRGEGG 97 >gi|149912825|ref|ZP_01901359.1| flagellar protein FlaF, putative [Roseobacter sp. AzwK-3b] gi|149813231|gb|EDM73057.1| flagellar protein FlaF, putative [Roseobacter sp. AzwK-3b] Length = 124 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 23/98 (23%), Positives = 46/98 (46%), Gaps = 1/98 (1%) Query: 17 RKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLN 76 R E+ R L+ A K+ + + AL+ R+W++ D+ + N LP ++K Sbjct: 22 RDTEYDAFARVTRRLTAAAKTPGDVPELAAALYDNRRLWMILASDVALKSNPLPGDLKAR 81 Query: 77 LISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 LI + + ++ K+ + + +I+V V GL+ Sbjct: 82 LIYLAEFAEVHGRKVLAGKATA-EPLIEVNRAVMQGLQ 118 >gi|145529632|ref|XP_001450599.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124418221|emb|CAK83202.1| unnamed protein product [Paramecium tetraurelia] Length = 315 Score = 35.8 bits (81), Expect = 2.3, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 16/74 (21%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63 YY I+++S C ++ IL + LS+ KSLPN QA LF RV Sbjct: 240 YY---IEDNSCSCNSKKKGILKQHKIPLSLTSKSLPNKTQAKSKLFKKKRV--------- 287 Query: 64 SEDNHLPQEVKLNL 77 H QE N Sbjct: 288 ----HFSQETNFNF 297 >gi|302383513|ref|YP_003819336.1| flagellar FlaF family protein [Brevundimonas subvibrioides ATCC 15264] gi|302194141|gb|ADL01713.1| flagellar FlaF family protein [Brevundimonas subvibrioides ATCC 15264] Length = 120 Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust. Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 1/72 (1%) Query: 42 KQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQD 101 K ++AL + R+W V D N L ++ +ISI L+V + I R + + ++ Sbjct: 42 KTRIDALDWNRRLWSVLATDCSDPSNQLNTPLRAQIISISLFVGRHSSAIMRGEED-FEA 100 Query: 102 IIDVISIVRDGL 113 +ID+ + GL Sbjct: 101 LIDINRSIMQGL 112 >gi|260429492|ref|ZP_05783469.1| flagellar biosynthesis regulatory protein FlaF [Citreicella sp. SE45] gi|260420115|gb|EEX13368.1| flagellar biosynthesis regulatory protein FlaF [Citreicella sp. SE45] Length = 125 Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust. Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%) Query: 17 RKREHWILDRSISLLSIAHKSLPNS-KQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKL 75 R E+ + R + A ++ P + Q VEAL+ R+W D+ N LPQE++ Sbjct: 22 RATEYDLFARVTHRIKAAAEAGPKAYPQLVEALYDNRRLWTTLAVDVADPSNKLPQELRA 81 Query: 76 NLISIGLWV 84 + + +V Sbjct: 82 QIFYLSEFV 90 >gi|118581735|ref|YP_902985.1| flagellar biosynthesis regulatory protein FlaF [Pelobacter propionicus DSM 2379] gi|118504445|gb|ABL00928.1| flagellar FlaF family protein [Pelobacter propionicus DSM 2379] Length = 127 Score = 34.7 bits (78), Expect = 4.1, Method: Compositional matrix adjust. Identities = 14/41 (34%), Positives = 27/41 (65%) Query: 46 EALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLK 86 EA+ Y +VW F +L DN LPQ+++ +++++ L++ K Sbjct: 51 EAIRYNQKVWSFFQSELSMPDNPLPQKLREDILNLSLFIDK 91 >gi|91080763|ref|XP_967505.1| PREDICTED: similar to otopetrin [Tribolium castaneum] gi|270005880|gb|EFA02328.1| hypothetical protein TcasGA2_TC007996 [Tribolium castaneum] Length = 701 Score = 34.7 bits (78), Expect = 4.3, Method: Compositional matrix adjust. Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 3/72 (4%) Query: 36 KSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECE---RIR 92 K L N ++ ALF + VV+I D++ E N L + L L+ I L + ++ Sbjct: 132 KHLTNILSSMYALFVVTLGLVVYISDVILESNPLAETFSLYLVVIALIFILYLTVDVKLY 191 Query: 93 RNKSNSYQDIID 104 NK N Y D+++ Sbjct: 192 VNKKNKYNDLLE 203 >gi|254294686|ref|YP_003060709.1| flagellar FlaF family protein [Hirschia baltica ATCC 49814] gi|254043217|gb|ACT60012.1| flagellar FlaF family protein [Hirschia baltica ATCC 49814] Length = 134 Score = 34.7 bits (78), Expect = 5.1, Method: Compositional matrix adjust. Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 45 VEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIID 104 V++L +VW D N LP +++ +IS+ L+V + RN+S + +ID Sbjct: 46 VKSLDKNRQVWNAMAMDCAQPGNALPDDLRAGIISLSLFVNRHTSEASRNRS-EIETLID 104 Query: 105 VISIVRDGL 113 + + GL Sbjct: 105 INRNIMQGL 113 >gi|148256807|ref|YP_001241392.1| flagellar biosynthesis regulatory protein FlaF [Bradyrhizobium sp. BTAi1] gi|146408980|gb|ABQ37486.1| hypothetical protein BBta_5526 [Bradyrhizobium sp. BTAi1] Length = 96 Score = 34.3 bits (77), Expect = 5.2, Method: Compositional matrix adjust. Identities = 13/43 (30%), Positives = 27/43 (62%) Query: 46 EALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKEC 88 +AL + R+W +F+ + DN E++ N+ +IG++V+K+ Sbjct: 24 KALLFNRRLWTIFMSAVEMNDNPNSIEIRQNIANIGVFVMKQT 66 Searching..................................................done Results from round 2 >gi|254780522|ref|YP_003064935.1| flagellar biosynthesis regulatory protein FlaF [Candidatus Liberibacter asiaticus str. psy62] gi|254040199|gb|ACT56995.1| flagellar biosynthesis regulatory protein FlaF [Candidatus Liberibacter asiaticus str. psy62] Length = 114 Score = 163 bits (413), Expect = 7e-39, Method: Composition-based stats. Identities = 114/114 (100%), Positives = 114/114 (100%) Query: 1 MRQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQ 60 MRQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQ Sbjct: 1 MRQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQ 60 Query: 61 DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK Sbjct: 61 DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 >gi|116250503|ref|YP_766341.1| flagellar biosynthesis regulatory protein FlaF [Rhizobium leguminosarum bv. viciae 3841] gi|115255151|emb|CAK06225.1| putative flagellar synthesis related protein [Rhizobium leguminosarum bv. viciae 3841] Length = 115 Score = 162 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 62/115 (53%), Positives = 86/115 (74%), Gaps = 1/115 (0%) Query: 1 MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M Q+ Y E +Q+S + ++RE +LDRSI LLS+A + ++A+EALFYT RVW+ FI Sbjct: 1 MYQFSYAEVMQDSVADAKEREWQVLDRSIDLLSLAREKEKYGREAIEALFYTRRVWISFI 60 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 +DL DN L E++ NLISI +W+LKEC+RIR+ +SN+YQ IIDV +I+RDGLK Sbjct: 61 EDLKHPDNQLEIELRANLISIAIWILKECDRIRKRQSNNYQGIIDVTTIIRDGLK 115 >gi|241203127|ref|YP_002974223.1| flagellar biosynthesis regulatory protein FlaF [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857017|gb|ACS54684.1| flagellar FlaF family protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 115 Score = 161 bits (408), Expect = 2e-38, Method: Composition-based stats. Identities = 60/115 (52%), Positives = 84/115 (73%), Gaps = 1/115 (0%) Query: 1 MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M Q+ Y E +Q+S + ++RE +LDRSI LL+ A + ++A+EALFYT RVW+ FI Sbjct: 1 MYQFSYAEVMQDSVADAKEREWQVLDRSIDLLAAAREKEKYGREAIEALFYTRRVWISFI 60 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 +DL DN L ++ NLISI +W+LKEC+RIR+ +SN+YQ IIDV +I+RDGLK Sbjct: 61 EDLKHPDNQLEIGLRANLISIAIWILKECDRIRKRQSNNYQGIIDVTTIIRDGLK 115 >gi|222147592|ref|YP_002548549.1| flagellar biosynthesis regulatory protein FlaF [Agrobacterium vitis S4] gi|221734580|gb|ACM35543.1| FLAF protein [Agrobacterium vitis S4] Length = 115 Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 58/115 (50%), Positives = 84/115 (73%), Gaps = 1/115 (0%) Query: 1 MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M Q+ Y+E +++ + ++RE +LDRSI LLS A + ++ +EAL+YT RVW+ FI Sbjct: 1 MYQFSYNEIMEDGVADAKERERQVLDRSIDLLSQAKTAGKYGREGIEALYYTRRVWIRFI 60 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 +DL DN L E++ NLISI LW+LKEC+RIR+ +S++YQ IIDV +I+RDGLK Sbjct: 61 EDLKQPDNQLGTELRANLISIALWILKECDRIRKRESDNYQGIIDVTTIIRDGLK 115 >gi|190890385|ref|YP_001976927.1| flagellin synthesis regulator protein [Rhizobium etli CIAT 652] gi|190695664|gb|ACE89749.1| flagellin synthesis regulator protein [Rhizobium etli CIAT 652] gi|327193062|gb|EGE59974.1| flagellin synthesis regulator protein [Rhizobium etli CNPAF512] Length = 115 Score = 160 bits (406), Expect = 4e-38, Method: Composition-based stats. Identities = 60/115 (52%), Positives = 84/115 (73%), Gaps = 1/115 (0%) Query: 1 MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M Q+ Y E +Q+S + ++RE +LDRSI LL++A ++A+EALFYT RVW+ FI Sbjct: 1 MYQFSYAEVMQDSVADAKEREWQVLDRSIELLALARDKDKYGREAIEALFYTRRVWISFI 60 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 +DL DN L +++ NLISI +W+LKEC+RIR+ SN+YQ IIDV +I+RDGLK Sbjct: 61 EDLKHPDNQLDVQLRANLISIAIWILKECDRIRKRLSNNYQGIIDVTTIIRDGLK 115 >gi|86356333|ref|YP_468225.1| flagellar biosynthesis regulatory protein FlaF [Rhizobium etli CFN 42] gi|218671598|ref|ZP_03521268.1| flagellar biosynthesis regulatory protein FlaF [Rhizobium etli GR56] gi|86280435|gb|ABC89498.1| flagellin synthesis regulator protein [Rhizobium etli CFN 42] Length = 115 Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats. Identities = 61/115 (53%), Positives = 84/115 (73%), Gaps = 1/115 (0%) Query: 1 MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M Q+ Y E +Q+S + ++RE +LDRSI LLS+A ++A+EALFYT RVW+ FI Sbjct: 1 MYQFSYAEVMQDSVADAKEREWQVLDRSIELLSLARDKEKYGREAIEALFYTRRVWISFI 60 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 +DL DN L +++ NLISI +W+LKEC+RIR+ SN+YQ IIDV +I+RDGLK Sbjct: 61 EDLKHPDNQLDVQLRANLISIAIWILKECDRIRKRLSNNYQGIIDVTTIIRDGLK 115 >gi|209547949|ref|YP_002279866.1| flagellar biosynthesis regulatory protein FlaF [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533705|gb|ACI53640.1| flagellar FlaF family protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 115 Score = 160 bits (405), Expect = 6e-38, Method: Composition-based stats. Identities = 62/115 (53%), Positives = 85/115 (73%), Gaps = 1/115 (0%) Query: 1 MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M Q+ Y E +Q+S + ++RE +LDRSI LLS+A + ++A+EALFYT RVW+ FI Sbjct: 1 MYQFSYAEVMQDSVADAKEREWQVLDRSIDLLSLAREKEKYGREAIEALFYTRRVWISFI 60 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 +DL DN L E++ NLISI +W+LKEC+RIR+ SN+YQ IIDV +I+RDGLK Sbjct: 61 EDLKHPDNQLEIELRANLISIAIWILKECDRIRKRLSNNYQGIIDVTTIIRDGLK 115 >gi|218462422|ref|ZP_03502513.1| flagellar biosynthesis regulatory protein FlaF [Rhizobium etli Kim 5] Length = 115 Score = 160 bits (405), Expect = 7e-38, Method: Composition-based stats. Identities = 60/115 (52%), Positives = 84/115 (73%), Gaps = 1/115 (0%) Query: 1 MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M Q+ Y E +Q+S + ++RE +LDRSI LL++A ++A+EALFYT RVW+ FI Sbjct: 1 MYQFSYAEVMQDSVADAKEREWQVLDRSIELLALARDKEKYGREAIEALFYTRRVWISFI 60 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 +DL DN L +++ NLISI +W+LKEC+RIR+ SN+YQ IIDV +I+RDGLK Sbjct: 61 EDLKHPDNQLDVQLRANLISIAIWILKECDRIRKRLSNNYQGIIDVTTIIRDGLK 115 >gi|222084888|ref|YP_002543417.1| flagellin synthesis regulator protein [Agrobacterium radiobacter K84] gi|221722336|gb|ACM25492.1| flagellin synthesis regulator protein [Agrobacterium radiobacter K84] Length = 115 Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats. Identities = 63/115 (54%), Positives = 85/115 (73%), Gaps = 1/115 (0%) Query: 1 MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M Q+ Y E +Q++ + ++RE +LDRSI+LL+ A ++A+EALFYT RVWV FI Sbjct: 1 MYQFSYAEVMQDAVADAKERERQVLDRSITLLAAARDKEKYGREAIEALFYTRRVWVSFI 60 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 +DL S DN L E++ NLISI LW+LKEC+RIRR +S +YQ IIDV +I+RDGLK Sbjct: 61 EDLKSPDNQLNVELRANLISIALWILKECDRIRRRQSENYQGIIDVTTIIRDGLK 115 >gi|114706625|ref|ZP_01439526.1| flagellar protein flaF [Fulvimarina pelagi HTCC2506] gi|114538017|gb|EAU41140.1| flagellar protein flaF [Fulvimarina pelagi HTCC2506] Length = 115 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 49/114 (42%), Positives = 78/114 (68%), Gaps = 1/114 (0%) Query: 1 MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M Q+ Y E Q+++++ R+RE D SI+LL A KS P S+ A+EA++ T +W + + Sbjct: 1 MYQFSYAEVAQDTAVDARERERQAFDHSIALLEKAEKSGPRSRDAIEAIYITRSLWSILV 60 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 +DL S DN LP+E++ LISIGLW++ E E IR KS +++ I+++ ++RDGL Sbjct: 61 EDLGSADNGLPEELRAELISIGLWIMSEAEAIRVGKSTNFKGIVEITRLIRDGL 114 >gi|110632637|ref|YP_672845.1| flagellar biosynthesis regulatory protein FlaF [Mesorhizobium sp. BNC1] gi|110283621|gb|ABG61680.1| flagellar FlaF [Chelativorans sp. BNC1] Length = 115 Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats. Identities = 47/115 (40%), Positives = 80/115 (69%), Gaps = 1/115 (0%) Query: 1 MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M Q+ Y E + +S + + RE +L RSI LL+ A ++ P S++A+EA+ + +RVW + Sbjct: 1 MYQFSYSEVLSDSVADAKDRERQLLTRSIDLLTQAREAGPRSREAIEAILFMNRVWTSLV 60 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 +DL N LP+E++ NLISIGLW+L+E E +R+ +S+++ +I++ I+RDGL+ Sbjct: 61 EDLGDPGNALPKELRANLISIGLWLLREGEEVRQGRSDNFDGLIEISQIIRDGLR 115 >gi|319781662|ref|YP_004141138.1| flagellar FlaF family protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167550|gb|ADV11088.1| flagellar FlaF family protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 115 Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats. Identities = 50/115 (43%), Positives = 80/115 (69%), Gaps = 1/115 (0%) Query: 1 MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M Q+ Y + S + + RE +L RSI +L+ A + S +A+EAL +T+RVW F+ Sbjct: 1 MYQFSYADIQSNSVADAKDRERELLTRSIDMLAAAAVAGHGSMEAIEALHFTNRVWTAFV 60 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 +DL S DN LP+E++ NLISIGLW+L+E E IR+ ++N+++ +I+V I+RDG++ Sbjct: 61 EDLGSSDNALPKELRANLISIGLWLLREAEDIRQGRTNNFEGLIEVSQIIRDGIQ 115 >gi|325291965|ref|YP_004277829.1| flagellar biosynthesis regulatory protein FlaF [Agrobacterium sp. H13-3] gi|325059818|gb|ADY63509.1| flagellar biosynthesis regulatory protein FlaF [Agrobacterium sp. H13-3] Length = 114 Score = 150 bits (379), Expect = 6e-35, Method: Composition-based stats. Identities = 54/115 (46%), Positives = 77/115 (66%), Gaps = 2/115 (1%) Query: 1 MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M Q+ Y E +++ + + RE L +SI LL A S + + +EALFYT RVW+ FI Sbjct: 1 MYQFSYAEIMEDGVADAKDRERQALTKSIDLLVEAKDS-SSQRHTIEALFYTRRVWIRFI 59 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 +DL +N L E++ NLISI +W+LKECE IR+ +S ++Q IIDV +I+RDGLK Sbjct: 60 EDLKQPENQLAMELRANLISIAIWILKECELIRKRQSTNFQGIIDVTTIIRDGLK 114 >gi|315122287|ref|YP_004062776.1| flagellar biosynthesis regulatory protein FlaF [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495689|gb|ADR52288.1| flagellar biosynthesis regulatory protein FlaF [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 114 Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats. Identities = 86/114 (75%), Positives = 102/114 (89%) Query: 1 MRQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQ 60 MRQYY+E +QESS+E RKRE WIL++SISLLS A +S PNS++ VEAL+YT+RVWVVFIQ Sbjct: 1 MRQYYNEIVQESSVESRKREFWILNKSISLLSSAQQSKPNSREVVEALYYTNRVWVVFIQ 60 Query: 61 DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 DLVSE N L +EVKLNLISIGLW+L+ECERIRRN+SN+YQ IIDV S+VRDGLK Sbjct: 61 DLVSESNQLTEEVKLNLISIGLWILEECERIRRNESNNYQAIIDVTSVVRDGLK 114 >gi|239834424|ref|ZP_04682752.1| flagellar biosynthesis regulatory protein FlaF [Ochrobactrum intermedium LMG 3301] gi|239822487|gb|EEQ94056.1| flagellar biosynthesis regulatory protein FlaF [Ochrobactrum intermedium LMG 3301] Length = 114 Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats. Identities = 45/114 (39%), Positives = 77/114 (67%), Gaps = 1/114 (0%) Query: 1 MRQ-YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M Q Y + + + R+RE + DRSI++L +A ++ S++ ++A ++T+++W I Sbjct: 1 MYQMRYEDVMTDDMASARERERTLFDRSIAMLELAKENGSGSREGIDATYFTTKLWTTII 60 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 DL SE+N LP+E+K +IS+G++VLKE ERIR+ +SN Y +I++ +RDGL Sbjct: 61 DDLGSEENVLPKELKAAIISVGIFVLKEIERIRQGESNDYATLIEITQSIRDGL 114 >gi|260466600|ref|ZP_05812788.1| flagellar FlaF family protein [Mesorhizobium opportunistum WSM2075] gi|259029606|gb|EEW30894.1| flagellar FlaF family protein [Mesorhizobium opportunistum WSM2075] Length = 115 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 51/115 (44%), Positives = 81/115 (70%), Gaps = 1/115 (0%) Query: 1 MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M Q+ Y + S + + RE +L RSI +LS A + +S +AVEAL +T+RVW F+ Sbjct: 1 MYQFSYADVQSTSVSDAKDRERELLTRSIDMLSAAAAAGQDSMEAVEALHFTNRVWTTFV 60 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 +DL S DN LP+E++ NLISIGLW+L+E E IR+ ++++++ +I+V I+RDG++ Sbjct: 61 EDLGSSDNALPKELRANLISIGLWLLREAEDIRQGRTDNFEGLIEVSQIIRDGIQ 115 >gi|153011505|ref|YP_001372719.1| flagellar biosynthesis regulatory protein FlaF [Ochrobactrum anthropi ATCC 49188] gi|151563393|gb|ABS16890.1| flagellar FlaF family protein [Ochrobactrum anthropi ATCC 49188] Length = 114 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 45/114 (39%), Positives = 76/114 (66%), Gaps = 1/114 (0%) Query: 1 MRQ-YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M Q Y + + + ++RE + DRSI++L A + S++A++A ++T+++W I Sbjct: 1 MYQMRYEDVMNDDMASAKERERALFDRSIAMLEAAKANGSGSREAIDAAYFTTKLWTTII 60 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 DL SE+N LP+E+K +IS+G++VLKE ERIR+ +SN Y +I++ +RDGL Sbjct: 61 DDLGSEENVLPKELKAAIISVGIFVLKEIERIRQGESNDYATLIEITQSIRDGL 114 >gi|15887922|ref|NP_353603.1| flagellar biosynthesis regulatory protein FlaF [Agrobacterium tumefaciens str. C58] gi|15155518|gb|AAK86388.1| FLAF protein [Agrobacterium tumefaciens str. C58] Length = 114 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 55/115 (47%), Positives = 77/115 (66%), Gaps = 2/115 (1%) Query: 1 MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M Q+ Y E +++ + RE L +SI LL A S + + ++EALFYT RVW+ FI Sbjct: 1 MYQFSYAEIMEDGVANAKDRERQALTKSIDLLVEARDS-SSQRHSIEALFYTRRVWIRFI 59 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 +DL DN L E++ NLISI +W+LKECE IR+ +S ++Q IIDV +I+RDGLK Sbjct: 60 EDLKQPDNQLAMELRANLISIAIWILKECELIRKRQSTNFQGIIDVTTIIRDGLK 114 >gi|13472595|ref|NP_104162.1| flagellar biosynthesis regulatory protein FlaF [Mesorhizobium loti MAFF303099] gi|14023341|dbj|BAB49948.1| flagellar protein; FlaF [Mesorhizobium loti MAFF303099] Length = 115 Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats. Identities = 51/115 (44%), Positives = 82/115 (71%), Gaps = 1/115 (0%) Query: 1 MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M Q+ Y + S + + RE +L RSI +LS A + +S +A+EAL +T+RVW +F+ Sbjct: 1 MYQFSYADVQSTSVSDAKDRERELLTRSIDMLSAAAAAGQDSMEAIEALNFTNRVWTIFV 60 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 +DL S DN LP+E++ NLISIGLW+L+E E IR+ ++N+++ +I+V I+RDG++ Sbjct: 61 EDLGSSDNALPKELRANLISIGLWLLREAEDIRQGRTNNFEGLIEVSQIIRDGIQ 115 >gi|90418362|ref|ZP_01226274.1| flagellar protein FlaF [Aurantimonas manganoxydans SI85-9A1] gi|90338034|gb|EAS51685.1| flagellar protein FlaF [Aurantimonas manganoxydans SI85-9A1] Length = 115 Score = 146 bits (369), Expect = 9e-34, Method: Composition-based stats. Identities = 48/115 (41%), Positives = 75/115 (65%), Gaps = 1/115 (0%) Query: 1 MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M Q+ Y E Q+ ++ R+RE LD SI L A P S+ A+EA++ T +W + I Sbjct: 1 MYQFSYAEVAQDIEVDARERERQALDHSIEQLKKADAEGPRSRAAIEAIYTTRSLWALVI 60 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 +DL S DN LP+ ++ LISIGLW+++E E IR KS +++ II++ +++R+GLK Sbjct: 61 EDLASADNGLPEALRAELISIGLWIMREAEAIRLGKSENFKGIIEITTLIREGLK 115 >gi|225628426|ref|ZP_03786460.1| Protein flaF [Brucella ceti str. Cudo] gi|254706499|ref|ZP_05168327.1| flagellar biosynthesis regulatory protein FlaF [Brucella pinnipedialis M163/99/10] gi|254711216|ref|ZP_05173027.1| flagellar biosynthesis regulatory protein FlaF [Brucella pinnipedialis B2/94] gi|254711815|ref|ZP_05173626.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti M644/93/1] gi|254714884|ref|ZP_05176695.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti M13/05/1] gi|256030155|ref|ZP_05443769.1| flagellar biosynthesis regulatory protein FlaF [Brucella pinnipedialis M292/94/1] gi|256158334|ref|ZP_05456238.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti M490/95/1] gi|256252732|ref|ZP_05458268.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti B1/94] gi|260166793|ref|ZP_05753604.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. F5/99] gi|261216574|ref|ZP_05930855.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti M13/05/1] gi|261219810|ref|ZP_05934091.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti B1/94] gi|261313953|ref|ZP_05953150.1| flagellar biosynthesis regulatory protein FlaF [Brucella pinnipedialis M163/99/10] gi|261318807|ref|ZP_05958004.1| flagellar biosynthesis regulatory protein FlaF [Brucella pinnipedialis B2/94] gi|261319444|ref|ZP_05958641.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti M644/93/1] gi|261756170|ref|ZP_05999879.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. F5/99] gi|265987186|ref|ZP_06099743.1| flagellar biosynthesis regulatory protein FlaF [Brucella pinnipedialis M292/94/1] gi|265996849|ref|ZP_06109406.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti M490/95/1] gi|225616272|gb|EEH13320.1| Protein flaF [Brucella ceti str. Cudo] gi|260918394|gb|EEX85047.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti B1/94] gi|260921663|gb|EEX88231.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti M13/05/1] gi|261292134|gb|EEX95630.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti M644/93/1] gi|261298030|gb|EEY01527.1| flagellar biosynthesis regulatory protein FlaF [Brucella pinnipedialis B2/94] gi|261302979|gb|EEY06476.1| flagellar biosynthesis regulatory protein FlaF [Brucella pinnipedialis M163/99/10] gi|261736154|gb|EEY24150.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. F5/99] gi|262551146|gb|EEZ07307.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti M490/95/1] gi|264659383|gb|EEZ29644.1| flagellar biosynthesis regulatory protein FlaF [Brucella pinnipedialis M292/94/1] Length = 114 Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 45/114 (39%), Positives = 76/114 (66%), Gaps = 1/114 (0%) Query: 1 MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M Q Y + + + ++RE + DRSI++L +A + S++ ++A ++TS++W I Sbjct: 1 MYQLRYEDVMNDDMASAKERERMLFDRSIAMLEVARANGAESREGIDAAYFTSKLWTTII 60 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 DL SE+N LP+E++ +ISIG++VLKE ERIR+ +SN Y +I++ +RDGL Sbjct: 61 DDLGSEENALPKELRAAIISIGIFVLKEIERIRQGESNDYATLIEITQSIRDGL 114 >gi|23500851|ref|NP_700291.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis 1330] gi|62317954|ref|YP_223807.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus bv. 1 str. 9-941] gi|83269931|ref|YP_419222.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis biovar Abortus 2308] gi|148558679|ref|YP_001258001.1| flagellar biosynthesis regulatory protein FlaF [Brucella ovis ATCC 25840] gi|161621179|ref|YP_001595065.1| flagellar biosynthesis regulatory protein FlaF [Brucella canis ATCC 23365] gi|163845454|ref|YP_001623109.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis ATCC 23445] gi|189023205|ref|YP_001932946.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus S19] gi|225686882|ref|YP_002734854.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis ATCC 23457] gi|237817499|ref|ZP_04596490.1| Protein flaF [Brucella abortus str. 2308 A] gi|254691614|ref|ZP_05154868.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus bv. 6 str. 870] gi|254695090|ref|ZP_05156918.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus bv. 3 str. Tulya] gi|254698186|ref|ZP_05160014.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus bv. 2 str. 86/8/59] gi|254699259|ref|ZP_05161087.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis bv. 5 str. 513] gi|254702380|ref|ZP_05164208.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis bv. 3 str. 686] gi|254720776|ref|ZP_05182587.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. 83/13] gi|254731631|ref|ZP_05190209.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus bv. 4 str. 292] gi|256015895|ref|YP_003105904.1| flagellar biosynthesis regulatory protein FlaF [Brucella microti CCM 4915] gi|256059807|ref|ZP_05450002.1| flagellar biosynthesis regulatory protein FlaF [Brucella neotomae 5K33] gi|256112179|ref|ZP_05453100.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis bv. 3 str. Ether] gi|256256801|ref|ZP_05462337.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus bv. 9 str. C68] gi|256261981|ref|ZP_05464513.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis bv. 2 str. 63/9] gi|260544139|ref|ZP_05819960.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus NCTC 8038] gi|260568717|ref|ZP_05839186.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis bv. 4 str. 40] gi|260757245|ref|ZP_05869593.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus bv. 6 str. 870] gi|260759390|ref|ZP_05871738.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus bv. 4 str. 292] gi|260762633|ref|ZP_05874965.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus bv. 2 str. 86/8/59] gi|260883049|ref|ZP_05894663.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus bv. 9 str. C68] gi|261215441|ref|ZP_05929722.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus bv. 3 str. Tulya] gi|261323787|ref|ZP_05962984.1| flagellar biosynthesis regulatory protein FlaF [Brucella neotomae 5K33] gi|261749699|ref|ZP_05993408.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis bv. 5 str. 513] gi|261752943|ref|ZP_05996652.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis bv. 3 str. 686] gi|265985834|ref|ZP_06098569.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. 83/13] gi|265993606|ref|ZP_06106163.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis bv. 3 str. Ether] gi|294852965|ref|ZP_06793637.1| flagellar protein FlaF [Brucella sp. NVSL 07-0026] gi|297250154|ref|ZP_06933855.1| flaF, flagellar biosynthesis regulatory protein FlaF [Brucella abortus bv. 5 str. B3196] gi|306840133|ref|ZP_07472918.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. NF 2653] gi|306841279|ref|ZP_07473990.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. BO2] gi|23464515|gb|AAN34296.1| flagellar protein FlaF, putative [Brucella suis 1330] gi|62198147|gb|AAX76446.1| hypothetical FlaF [Brucella abortus bv. 1 str. 9-941] gi|82940205|emb|CAJ13261.1| flagellar protein FlaF, putative [Brucella melitensis biovar Abortus 2308] gi|148369964|gb|ABQ62836.1| putative flagellar protein FlaF [Brucella ovis ATCC 25840] gi|161337990|gb|ABX64294.1| flagellar FlaF family protein [Brucella canis ATCC 23365] gi|163676177|gb|ABY40287.1| Hypothetical protein, conserved [Brucella suis ATCC 23445] gi|189021779|gb|ACD74500.1| flagellar protein FlaF, putative [Brucella abortus S19] gi|225642987|gb|ACO02900.1| Protein flaF [Brucella melitensis ATCC 23457] gi|237787334|gb|EEP61551.1| Protein flaF [Brucella abortus str. 2308 A] gi|255998555|gb|ACU50242.1| flagellar biosynthesis regulatory protein FlaF [Brucella microti CCM 4915] gi|260097410|gb|EEW81284.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus NCTC 8038] gi|260155382|gb|EEW90463.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis bv. 4 str. 40] gi|260669708|gb|EEX56648.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus bv. 4 str. 292] gi|260673054|gb|EEX59875.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus bv. 2 str. 86/8/59] gi|260677353|gb|EEX64174.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus bv. 6 str. 870] gi|260872577|gb|EEX79646.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus bv. 9 str. C68] gi|260917048|gb|EEX83909.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus bv. 3 str. Tulya] gi|261299767|gb|EEY03264.1| flagellar biosynthesis regulatory protein FlaF [Brucella neotomae 5K33] gi|261739452|gb|EEY27378.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis bv. 5 str. 513] gi|261742696|gb|EEY30622.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis bv. 3 str. 686] gi|262764476|gb|EEZ10508.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis bv. 3 str. Ether] gi|263091465|gb|EEZ16001.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis bv. 2 str. 63/9] gi|264664426|gb|EEZ34687.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. 83/13] gi|294818620|gb|EFG35620.1| flagellar protein FlaF [Brucella sp. NVSL 07-0026] gi|297174023|gb|EFH33387.1| flaF, flagellar biosynthesis regulatory protein FlaF [Brucella abortus bv. 5 str. B3196] gi|306288681|gb|EFM60012.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. BO2] gi|306404778|gb|EFM61072.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. NF 2653] gi|326411300|gb|ADZ68364.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis M28] gi|326554589|gb|ADZ89228.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis M5-90] Length = 114 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 45/114 (39%), Positives = 75/114 (65%), Gaps = 1/114 (0%) Query: 1 MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M Q Y + + + ++RE + DRSI++L A + S++ ++A ++TS++W I Sbjct: 1 MYQLRYEDVMNDDMASAKERERMLFDRSIAMLEAARANGAESREGIDAAYFTSKLWTTII 60 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 DL SE+N LP+E++ +ISIG++VLKE ERIR+ +SN Y +I++ +RDGL Sbjct: 61 DDLGSEENALPKELRAAIISIGIFVLKEIERIRQGESNDYATLIEITQSIRDGL 114 >gi|17988506|ref|NP_541139.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis bv. 1 str. 16M] gi|256042863|ref|ZP_05445809.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis bv. 1 str. Rev.1] gi|260564100|ref|ZP_05834585.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis bv. 1 str. 16M] gi|265989298|ref|ZP_06101855.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis bv. 1 str. Rev.1] gi|17984298|gb|AAL53403.1| flaf protein [Brucella melitensis bv. 1 str. 16M] gi|260151743|gb|EEW86836.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis bv. 1 str. 16M] gi|262999967|gb|EEZ12657.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis bv. 1 str. Rev.1] Length = 114 Score = 144 bits (364), Expect = 3e-33, Method: Composition-based stats. Identities = 44/114 (38%), Positives = 75/114 (65%), Gaps = 1/114 (0%) Query: 1 MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M Q Y + + + ++RE + DR+I++L A + S++ ++A ++TS++W I Sbjct: 1 MYQLRYEDVMNDDMASAKERERMLFDRTIAMLEAARANGAESREGIDAAYFTSKLWTTII 60 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 DL SE+N LP+E++ +ISIG++VLKE ERIR+ +SN Y +I++ +RDGL Sbjct: 61 DDLGSEENALPKELRAAIISIGIFVLKEIERIRQGESNDYATLIEITQSIRDGL 114 >gi|319409166|emb|CBI82810.1| Flaf protein [Bartonella schoenbuchensis R1] Length = 122 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 37/114 (32%), Positives = 67/114 (58%), Gaps = 1/114 (0%) Query: 1 MRQ-YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M Q Y + +++ ++ R+RE + DR I L A P S + EA+ + ++W++ I Sbjct: 1 MYQMRYEDVMEDDAMSARERERSLFDRCIKLFLDAKAKGPGSHEVNEAVQFARKLWIILI 60 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 +DL +N LP E+K +LISIG ++LKE +++ K + ++++ +RDGL Sbjct: 61 EDLGQAENALPPELKASLISIGFFILKEIQKLDEGKVADFDVLVEISESIRDGL 114 >gi|217976243|ref|YP_002360390.1| flagellar biosynthesis regulatory protein FlaF [Methylocella silvestris BL2] gi|217501619|gb|ACK49028.1| flagellar FlaF family protein [Methylocella silvestris BL2] Length = 115 Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats. Identities = 45/115 (39%), Positives = 74/115 (64%), Gaps = 1/115 (0%) Query: 1 MRQ-YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M Q Y E+++ S ECR+RE LD ++ LL A S A EAL + R+W I Sbjct: 1 MYQRSYAESLESSPGECRERERRALDHALQLLEKARHDGVGSAAAAEALHFLCRLWKALI 60 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 +DL+S +N LP ++ +L+S+G+WVL+E + IR KS++++ +I++ S +R+GL+ Sbjct: 61 EDLISPENDLPDVLRGDLVSVGIWVLREADSIREEKSSNFRGLIEICSAIRNGLR 115 >gi|306845416|ref|ZP_07477990.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. BO1] gi|306274159|gb|EFM55975.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. BO1] Length = 114 Score = 143 bits (362), Expect = 5e-33, Method: Composition-based stats. Identities = 44/114 (38%), Positives = 75/114 (65%), Gaps = 1/114 (0%) Query: 1 MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M Q Y + + + ++RE + DRSI++L A + S++ ++A ++TS++W I Sbjct: 1 MYQLRYEDVMNDDMASAKERERMLFDRSIAMLEAARANGAESREGIDAAYFTSKLWTTII 60 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 DL SE+N LP+E++ +ISIG++VLKE ERIR+ +SN Y +I++ ++DGL Sbjct: 61 DDLGSEENALPKELRAAIISIGIFVLKEIERIRQGESNDYATLIEITQSIQDGL 114 >gi|296445193|ref|ZP_06887153.1| flagellar FlaF family protein [Methylosinus trichosporium OB3b] gi|296257367|gb|EFH04434.1| flagellar FlaF family protein [Methylosinus trichosporium OB3b] Length = 115 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 43/112 (38%), Positives = 73/112 (65%) Query: 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQD 61 R Y +T Q+SS R RE +L+R+I LL++A P S+++ EA R+W++F+ D Sbjct: 3 RHLYAQTAQDSSAVARGRERDVLERAIRLLAVAKVKGPRSRESFEATDNLRRLWLLFVDD 62 Query: 62 LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 L S+ N LP+ ++ +LISIGLWV++E + I K +++ +I++ ++ DGL Sbjct: 63 LSSDGNALPEALRASLISIGLWVMREVDAIDSGKCDNFDGLIEINQMIADGL 114 >gi|254473396|ref|ZP_05086793.1| flagellar FlaF [Pseudovibrio sp. JE062] gi|211957512|gb|EEA92715.1| flagellar FlaF [Pseudovibrio sp. JE062] Length = 115 Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 42/114 (36%), Positives = 70/114 (61%), Gaps = 1/114 (0%) Query: 1 MRQ-YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M Q Y ET+++SS + R +E + ++ L A + S +A +AL R+W + I Sbjct: 1 MYQMSYAETLEDSSEDRRGQERELFSLVVAQLQAADEHGSASSEAAQALTSVHRLWSILI 60 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 DL S +N LP E++ +LISIG+W +K+ + IR KS+ ++ +I++ +VRDGL Sbjct: 61 SDLGSPENGLPAELRADLISIGIWCVKQADLIREGKSDDFKSLIEINELVRDGL 114 >gi|319403981|emb|CBI77569.1| Flaf protein [Bartonella rochalimae ATCC BAA-1498] Length = 122 Score = 140 bits (352), Expect = 8e-32, Method: Composition-based stats. Identities = 38/114 (33%), Positives = 69/114 (60%), Gaps = 1/114 (0%) Query: 1 MRQ-YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M Q Y + +++ ++ R+RE ++ DR I LL A P S +A +A+ + ++WV+ I Sbjct: 1 MYQMRYEDVMEDDAMSARERERFLFDRCIKLLLAAKAKGPGSCEAKDAVQFARKLWVILI 60 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 +DL N LPQ +K +LISIG ++LKE +++ + + ++++ +RDGL Sbjct: 61 EDLGQAANALPQALKASLISIGFFILKEIQKLDEGEITDFDVLVEISESIRDGL 114 >gi|328545488|ref|YP_004305597.1| flagellar protein flaF [polymorphum gilvum SL003B-26A1] gi|326415229|gb|ADZ72292.1| Flagellar protein flaF [Polymorphum gilvum SL003B-26A1] Length = 116 Score = 140 bits (352), Expect = 9e-32, Method: Composition-based stats. Identities = 46/115 (40%), Positives = 73/115 (63%), Gaps = 1/115 (0%) Query: 1 MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M + Y +TI + ++ R E +D I+ L A + S++AVEA+F T R+W FI Sbjct: 1 MYSFSYAQTIDDLCVDQRSDERQAMDIVIAQLERAREKGLKSREAVEAIFNTRRLWSFFI 60 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 + L + N LP ++ +LISIG+WV+KE ER+R+ ++ + +IDV ++VRDGLK Sbjct: 61 ESLADDANELPPSLRADLISIGIWVIKEVERVRQRETETLDALIDVNAMVRDGLK 115 >gi|319406997|emb|CBI80634.1| Flaf protein [Bartonella sp. 1-1C] Length = 122 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 37/114 (32%), Positives = 69/114 (60%), Gaps = 1/114 (0%) Query: 1 MRQ-YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M Q Y + +++ ++ R+RE ++ DR I LL A P + +A +A+ + ++WV+ I Sbjct: 1 MYQMRYEDVMEDDAMSARERERFLFDRCIKLLLAAKAKGPGTCEAKDAVQFARKLWVILI 60 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 +DL N LPQ +K +LISIG ++LKE +++ + + ++++ +RDGL Sbjct: 61 EDLGQAANALPQALKASLISIGFFILKEIQKLDEGEITDFDVLVEISESIRDGL 114 >gi|254505115|ref|ZP_05117266.1| Flagellar protein FlaF [Labrenzia alexandrii DFL-11] gi|222441186|gb|EEE47865.1| Flagellar protein FlaF [Labrenzia alexandrii DFL-11] Length = 116 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 48/114 (42%), Positives = 70/114 (61%), Gaps = 1/114 (0%) Query: 1 MR-QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M Y E + I+ R EH + I+ L+ AH+ S +AV+ALFYT RVW F+ Sbjct: 1 MYNLSYAEVMDNLCIDDRLNEHKAMCIIIAKLTAAHEKGVRSPEAVDALFYTRRVWGFFM 60 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 ++L + N LP E + NLIS+G+WVLKE E +R+ + + DII++ SI+RD L Sbjct: 61 ENLADDANQLPDETRANLISVGIWVLKEAEALRQWEREDFSDIIEINSIIRDSL 114 >gi|121602017|ref|YP_989380.1| flagellar biosynthesis regulatory protein FlaF [Bartonella bacilliformis KC583] gi|120614194|gb|ABM44795.1| Flaf protein [Bartonella bacilliformis KC583] Length = 122 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 39/114 (34%), Positives = 70/114 (61%), Gaps = 1/114 (0%) Query: 1 MRQ-YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M Q Y + +++ ++ R+RE + DR I LL A + P + +A EA+ + ++WV+ I Sbjct: 1 MYQMRYEDVMEDDAMSARERERSLFDRCIKLLQDAKEKGPGTYEANEAVQFARKLWVILI 60 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 +DL +N LPQ +K +LISIG ++LKE +R+ + + ++++ +RDGL Sbjct: 61 EDLGQAENALPQTLKASLISIGFFILKEIQRLDEGEIADFDVLVEISESIRDGL 114 >gi|319898659|ref|YP_004158752.1| Flaf protein [Bartonella clarridgeiae 73] gi|319402623|emb|CBI76168.1| Flaf protein [Bartonella clarridgeiae 73] Length = 122 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 38/114 (33%), Positives = 69/114 (60%), Gaps = 1/114 (0%) Query: 1 MRQ-YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M Q Y + +++ ++ R+RE ++ DR I LL A P + +A EA+ + ++WV+ I Sbjct: 1 MYQMRYEDVMEDDAMSARERERFLFDRCIKLLLDAKMKGPGTCEAKEAVQFARKLWVILI 60 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 +DL N LPQ +K +LISIG ++LKE +++ + + ++++ +RDGL Sbjct: 61 EDLGQAANALPQALKASLISIGFFILKEIQKLDEGEITDFDVLVEISESIRDGL 114 >gi|115523196|ref|YP_780107.1| flagellar biosynthesis regulatory protein FlaF [Rhodopseudomonas palustris BisA53] gi|115517143|gb|ABJ05127.1| flagellar FlaF family protein [Rhodopseudomonas palustris BisA53] Length = 115 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 44/110 (40%), Positives = 64/110 (58%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63 Y I++S+ E R RE+ LD I LL + EAL + ++W F+QDL Sbjct: 5 SYDNMIEDSAHEARAREYQALDHGIDLLKRLQNGDLQPFEQTEALLFMRKLWTFFVQDLS 64 Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 S N LP+ ++ LISIGLWV+KE +RIR+ K+ D+I + +I+RD L Sbjct: 65 SPKNGLPESLRAELISIGLWVIKEADRIRQEKATDIDDLIAINTIIRDSL 114 >gi|319405424|emb|CBI79043.1| Flaf protein [Bartonella sp. AR 15-3] Length = 122 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 37/114 (32%), Positives = 69/114 (60%), Gaps = 1/114 (0%) Query: 1 MRQ-YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M Q Y + +++ ++ R+RE ++ DR I LL A P + +A +A+ + ++WV+ I Sbjct: 1 MYQMRYEDIMEDDAMSARERERFLFDRCIKLLLAAKAKGPGTCEAKDAVQFARKLWVILI 60 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 +DL N LPQ +K +LISIG ++LKE +++ + + ++++ +RDGL Sbjct: 61 EDLGQAANALPQALKASLISIGFFILKEIQKLDEGEITDFDVLVEISESIRDGL 114 >gi|300024585|ref|YP_003757196.1| flagellar FlaF family protein [Hyphomicrobium denitrificans ATCC 51888] gi|299526406|gb|ADJ24875.1| flagellar FlaF family protein [Hyphomicrobium denitrificans ATCC 51888] Length = 114 Score = 138 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 44/114 (38%), Positives = 78/114 (68%), Gaps = 1/114 (0%) Query: 1 MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M ++ Y ET+ +S+ R+ E +++S+S+L A K+ NS++AV+A+ + +R+W + Sbjct: 1 MYKFSYEETLSDSAGRKRENERLAIEQSVSMLRSAEKAGANSREAVDAICFLNRLWSFLL 60 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 +DLV +N LP +++ NLISIG+W+LKE + I KS ++ +IDV S++ +GL Sbjct: 61 EDLVKPENALPDDIRANLISIGIWMLKEADAISSGKSKNFAGLIDVSSVIAEGL 114 >gi|323136998|ref|ZP_08072078.1| flagellar FlaF family protein [Methylocystis sp. ATCC 49242] gi|322397759|gb|EFY00281.1| flagellar FlaF family protein [Methylocystis sp. ATCC 49242] Length = 115 Score = 137 bits (345), Expect = 5e-31, Method: Composition-based stats. Identities = 40/114 (35%), Positives = 67/114 (58%), Gaps = 1/114 (0%) Query: 1 MRQ-YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M Q Y E ES R +E L+ +I L++A P + +A EA Y R+W +F+ Sbjct: 1 MYQQRYAEIASESGKNARAKEREALEIAIKKLAVAKTRGPLTPEAFEATNYLRRLWAIFM 60 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 +DL +++N LP+ ++ +LISIGLW+ +E + I S ++ +I+V ++ DGL Sbjct: 61 EDLSNDENGLPESLRASLISIGLWIRREADLIDTGGSVNFDGLIEVNQLIADGL 114 >gi|118589963|ref|ZP_01547367.1| flagellar protein flaF [Stappia aggregata IAM 12614] gi|118437460|gb|EAV44097.1| flagellar protein flaF [Stappia aggregata IAM 12614] Length = 116 Score = 136 bits (344), Expect = 7e-31, Method: Composition-based stats. Identities = 46/114 (40%), Positives = 67/114 (58%), Gaps = 1/114 (0%) Query: 1 MR-QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M Y E + + + R EH + I L++A + S +AV+ALFYT R+W F+ Sbjct: 1 MYNLSYAEVMDDLCSDQRLNEHEAMTIVIGKLNVAKERGVKSPEAVDALFYTRRLWSYFL 60 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 + L E N LP E + NLIS+G+WVLKE E +R+ + + DII + SI+RD L Sbjct: 61 EHLADEANELPIETRANLISVGIWVLKEVEALRQWEQEDFSDIIQINSIIRDSL 114 >gi|15964435|ref|NP_384788.1| flagellar biosynthesis regulatory protein FlaF [Sinorhizobium meliloti 1021] gi|307318932|ref|ZP_07598363.1| flagellar FlaF family protein [Sinorhizobium meliloti AK83] gi|10998531|gb|AAG25961.1|AF300968_3 FlaF [Sinorhizobium meliloti] gi|15073612|emb|CAC45254.1| Putative flagellin synthesis regulator [Sinorhizobium meliloti 1021] gi|306895346|gb|EFN26101.1| flagellar FlaF family protein [Sinorhizobium meliloti AK83] Length = 115 Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 52/115 (45%), Positives = 84/115 (73%), Gaps = 1/115 (0%) Query: 1 MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M Q+ Y E ++E + RE +LDRSI+LL A + +++A+EA+++T R+W+ FI Sbjct: 1 MYQFAYAEIMEEGVAVSKDREKQVLDRSIALLQAAKEKDGYTREAIEAVYFTRRLWIRFI 60 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 +DL + DN L +E++ NLISIG+W+L E E+IR+ +S+++Q IID+ +I+RDGLK Sbjct: 61 EDLRAPDNQLNEELRANLISIGIWILNETEKIRKRESSNFQGIIDITTIIRDGLK 115 >gi|150395506|ref|YP_001325973.1| flagellar biosynthesis regulatory protein FlaF [Sinorhizobium medicae WSM419] gi|150027021|gb|ABR59138.1| flagellar FlaF family protein [Sinorhizobium medicae WSM419] Length = 115 Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 52/115 (45%), Positives = 84/115 (73%), Gaps = 1/115 (0%) Query: 1 MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M Q+ Y E ++E + RE +LDRSI+LL A + +++A+EA+++T R+W+ FI Sbjct: 1 MYQFAYAEIMEEGVAVSKDREKQVLDRSIALLQAAKEKNGYTREAIEAVYFTRRLWIRFI 60 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 +DL + DN L +E++ NLISIG+W+L E E+IR+ +S+++Q IID+ +I+RDGLK Sbjct: 61 EDLRAPDNQLNEELRANLISIGIWILNETEKIRKRESSNFQGIIDITTIIRDGLK 115 >gi|227820878|ref|YP_002824848.1| flagellar biosynthesis regulatory protein FlaF [Sinorhizobium fredii NGR234] gi|227339877|gb|ACP24095.1| predicted flagellar protein FlaF [Sinorhizobium fredii NGR234] Length = 115 Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 54/115 (46%), Positives = 82/115 (71%), Gaps = 1/115 (0%) Query: 1 MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M Q+ Y E ++E + RE +L+RSI+LL A + S++A+EA++YT RVW+ FI Sbjct: 1 MYQFAYAEIMEEGVAVSKDREWQVLNRSIALLEAAKQQKGYSREAIEAIYYTRRVWIRFI 60 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 +DL + DN L E++ NLISIG+W+L E E+IR+ S+++Q IID+ +I+RDGLK Sbjct: 61 EDLRAPDNQLNDELRANLISIGIWILNETEKIRKRDSSNFQGIIDITTIIRDGLK 115 >gi|307311577|ref|ZP_07591218.1| flagellar FlaF family protein [Sinorhizobium meliloti BL225C] gi|306899594|gb|EFN30223.1| flagellar FlaF family protein [Sinorhizobium meliloti BL225C] Length = 115 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 51/115 (44%), Positives = 83/115 (72%), Gaps = 1/115 (0%) Query: 1 MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M Q+ Y E ++E + RE +LDRSI+LL A + +++A+ A+++T R+W+ FI Sbjct: 1 MYQFAYAEIMEEGVAVSKDREKQVLDRSIALLQAAKEKDGYTREAIAAVYFTRRLWIRFI 60 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 +DL + DN L +E++ NLISIG+W+L E E+IR+ +S+++Q IID+ +I+RDGLK Sbjct: 61 EDLRAPDNQLNEELRANLISIGIWILNETEKIRKRESSNFQGIIDITTIIRDGLK 115 >gi|90422627|ref|YP_530997.1| flagellar biosynthesis regulatory protein FlaF [Rhodopseudomonas palustris BisB18] gi|90104641|gb|ABD86678.1| flagellar FlaF [Rhodopseudomonas palustris BisB18] Length = 115 Score = 133 bits (334), Expect = 9e-30, Method: Composition-based stats. Identities = 44/110 (40%), Positives = 62/110 (56%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63 Y I++S E R RE L I LL+ S VEAL Y R+W F+ DL Sbjct: 5 SYDTVIEDSGQEARARERLALSHGIDLLTRLQSGDLRSPDDVEALLYIRRLWTFFVLDLS 64 Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 S N LP++++ +LISIG WV+KE +RIR+ K+ ++I V ++RD L Sbjct: 65 SPRNGLPEKLRADLISIGFWVIKEADRIRQEKATDIAELIAVNVVIRDSL 114 >gi|170748122|ref|YP_001754382.1| flagellar biosynthesis regulatory protein FlaF [Methylobacterium radiotolerans JCM 2831] gi|170654644|gb|ACB23699.1| flagellar FlaF family protein [Methylobacterium radiotolerans JCM 2831] Length = 119 Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 37/112 (33%), Positives = 67/112 (59%) Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDL 62 + Y ET+ +S R+RE DR+I L+ A + +++ EA + R+W + I DL Sbjct: 8 EAYRETMGDSPAIGREREREAFDRAIELMKRADAAEASAELRWEATSFLQRLWSMLIDDL 67 Query: 63 VSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 + N LP +++ +LISIGLW + ++I R ++ ++ +I V +++RDGL+ Sbjct: 68 ANPANSLPPQLRADLISIGLWNMSRSDQILRGDASGFEPLIYVNTLIRDGLR 119 >gi|27381966|ref|NP_773495.1| flagellar biosynthesis regulatory protein FlaF [Bradyrhizobium japonicum USDA 110] gi|27355136|dbj|BAC52120.1| fliC [Bradyrhizobium japonicum USDA 110] Length = 117 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 39/112 (34%), Positives = 64/112 (57%) Query: 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQD 61 + Y ++ES + R RE L I L K + + V++L Y R+W +FI+D Sbjct: 6 FEAYEAVVEESGYQERGRERQALSLGIDRLERIEKGPFSFEDLVQSLLYVRRLWTIFIED 65 Query: 62 LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 L +N LP +++ ++ISIGLWV+KE +R+R KS +I++ ++RD L Sbjct: 66 LSHPENGLPDKLRADIISIGLWVIKEADRLREEKSGDVMQLIEINRLIRDAL 117 >gi|158422274|ref|YP_001523566.1| flagellar biosynthesis regulatory protein FlaF [Azorhizobium caulinodans ORS 571] gi|158329163|dbj|BAF86648.1| flagellar FlaF protein [Azorhizobium caulinodans ORS 571] Length = 115 Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 37/115 (32%), Positives = 70/115 (60%), Gaps = 1/115 (0%) Query: 1 MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M ++ Y E +++SS E R RE DR++ LL A + ++ + A+ + R+W + I Sbjct: 1 MYKFSYAEILEDSSTESRARERDAFDRALELLVSAESAGLDTPECRAAMLFLQRLWGLLI 60 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 +DL +N L E++ +L+SIGLW ++E +R+ S+++ +I++ +RDGL+ Sbjct: 61 RDLTDANNELAPELRADLVSIGLWNIREADRVLEQSSSNFSGLININRTIRDGLQ 115 >gi|12330683|gb|AAG52880.1| FlaF [Brucella abortus] Length = 104 Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats. Identities = 41/104 (39%), Positives = 68/104 (65%), Gaps = 1/104 (0%) Query: 1 MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M Q Y + + + ++RE + DRSI++L A + S++ ++A ++TS++W I Sbjct: 1 MYQLRYEDVMNDDMASAKERERMLFDRSIAMLEAARANGAESREGIDAAYFTSKLWTTII 60 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDII 103 DL SE+N LP+E++ +ISIG++VLKE ERIR+ +SN Y +I Sbjct: 61 DDLGSEENALPKELRAAIISIGIFVLKEIERIRQGESNDYATLI 104 >gi|170744546|ref|YP_001773201.1| flagellar biosynthesis regulatory protein FlaF [Methylobacterium sp. 4-46] gi|168198820|gb|ACA20767.1| flagellar FlaF family protein [Methylobacterium sp. 4-46] Length = 115 Score = 130 bits (327), Expect = 6e-29, Method: Composition-based stats. Identities = 39/115 (33%), Positives = 70/115 (60%), Gaps = 1/115 (0%) Query: 1 MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M ++ Y+E ++++ CR+RE DR+++LL A + + EA+ + R+W V I Sbjct: 1 MYRFSYNEILEDAPDLCRERERAAFDRALALLRKADAADAKFEDRGEAVSFLQRLWDVLI 60 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 +DL++ +N LP+ ++ +L+SIGLW ++E R S +IDV + +RDGL+ Sbjct: 61 EDLLNPENGLPEPLRTDLVSIGLWSMREASEALRLPERSLAPLIDVNTAIRDGLR 115 >gi|163758035|ref|ZP_02165123.1| putative flagellin synthesis regulator protein [Hoeflea phototrophica DFL-43] gi|162284324|gb|EDQ34607.1| putative flagellin synthesis regulator protein [Hoeflea phototrophica DFL-43] Length = 115 Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats. Identities = 53/115 (46%), Positives = 83/115 (72%), Gaps = 1/115 (0%) Query: 1 MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M Q+ Y + ++ E R+RE ++ SISLL+ A S++A+EA+++ SR+WV F+ Sbjct: 1 MYQFSYADVQEDGVAEAREREREAINHSISLLTAAKAKGVESREAIEAVYFVSRLWVRFV 60 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 +DL S +N L +E++ NLISIG+W++KE ERIR+ +SN++Q IID+ I+RDGLK Sbjct: 61 EDLASPENQLEEELRANLISIGIWIIKESERIRKRESNNFQGIIDISIIIRDGLK 115 >gi|304392490|ref|ZP_07374430.1| flagellar biosynthesis regulatory protein FlaF [Ahrensia sp. R2A130] gi|303295120|gb|EFL89480.1| flagellar biosynthesis regulatory protein FlaF [Ahrensia sp. R2A130] Length = 117 Score = 126 bits (317), Expect = 9e-28, Method: Composition-based stats. Identities = 46/115 (40%), Positives = 69/115 (60%), Gaps = 1/115 (0%) Query: 1 MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M Q+ Y ET S R E +L +SI LL +A + SK AVEA+++T+R+W FI Sbjct: 3 MGQFGYAETNANSGKAARAGERALLRQSIDLLKLAKEQGTQSKAAVEAVYFTNRLWTAFI 62 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 +DL E+N L ++ NLISIG+ +L+ RIR + +I++V I+ DGL+ Sbjct: 63 EDLGGEENRLEPTLRANLISIGISILRSTGRIREGDETAIDEIVEVSGIILDGLR 117 >gi|182680454|ref|YP_001834600.1| flagellar biosynthesis regulatory protein FlaF [Beijerinckia indica subsp. indica ATCC 9039] gi|182636337|gb|ACB97111.1| flagellar FlaF family protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 91 Score = 125 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 32/91 (35%), Positives = 61/91 (67%) Query: 24 LDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLW 83 +D ++ LL A +S +EAL Y R+W + ++DL + DN LP+ ++ +L+S+G+W Sbjct: 1 MDHALDLLENARNKGASSIACIEALSYLCRLWTLLMEDLANPDNDLPEVLRADLLSVGIW 60 Query: 84 VLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 +LKE + I++ S++ +I++ +++RDGLK Sbjct: 61 ILKETDAIQKGTSDNLVGLIEICTLIRDGLK 91 >gi|312115277|ref|YP_004012873.1| flagellar FlaF family protein [Rhodomicrobium vannielii ATCC 17100] gi|311220406|gb|ADP71774.1| flagellar FlaF family protein [Rhodomicrobium vannielii ATCC 17100] Length = 115 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 47/115 (40%), Positives = 65/115 (56%), Gaps = 1/115 (0%) Query: 1 MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M Y E + R E + RSI+LL ++ S +A+EAL YT R+WV FI Sbjct: 1 MYHSPYQEALATDVRMARSTERASILRSINLLQRGAEAGSRSAEAIEALLYTKRLWVFFI 60 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 + L DN LP +++ +LISIG+ VL+ E IRR +S + IIDV V +GLK Sbjct: 61 EQLGLPDNRLPHKLRADLISIGIAVLRRIEAIRRGESKDFGFIIDVSRSVAEGLK 115 >gi|254559271|ref|YP_003066366.1| flagellar protein FlaF [Methylobacterium extorquens DM4] gi|254266549|emb|CAX22313.1| Flagellar protein FlaF [Methylobacterium extorquens DM4] Length = 116 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 34/114 (29%), Positives = 60/114 (52%), Gaps = 1/114 (0%) Query: 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEA-LFYTSRVWVVFIQ 60 R Y E ++++ R+RE DR++S L A + A A + +W V I Sbjct: 3 RLSYAEIMEDAPDLGRERERDAFDRALSQLRTAEAQGAAAGPARSAAVGSIQDLWNVLIA 62 Query: 61 DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 DL+ +N LP+ ++ +L++IGLW ++E + S +I+V + +RDGL+ Sbjct: 63 DLLDPENALPESLRADLVAIGLWNMREAGEVLSTPDRSLAALIEVNTSIRDGLQ 116 >gi|188579928|ref|YP_001923373.1| flagellar biosynthesis regulatory protein FlaF [Methylobacterium populi BJ001] gi|179343426|gb|ACB78838.1| flagellar FlaF family protein [Methylobacterium populi BJ001] Length = 116 Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 32/114 (28%), Positives = 59/114 (51%), Gaps = 1/114 (0%) Query: 2 RQYYHETIQESSIECRKREHWILDRSISLLS-IAHKSLPNSKQAVEALFYTSRVWVVFIQ 60 R Y E ++++ R+RE DR++ LL + + A+ +W V I Sbjct: 3 RLSYSEIMEDAPDLGREREREAFDRALGLLRTAEAQGAGAGAERNSAVGSIQELWNVLIS 62 Query: 61 DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 DL+ +N LP+ ++ +L++IGLW ++E + S +I+V + +RDGL+ Sbjct: 63 DLLDPENGLPEGLRADLVAIGLWNMREAGEVLSTPERSLSALIEVNTSIRDGLR 116 >gi|163850126|ref|YP_001638169.1| flagellar biosynthesis regulatory protein FlaF [Methylobacterium extorquens PA1] gi|218528730|ref|YP_002419546.1| flagellar biosynthesis regulatory protein FlaF [Methylobacterium chloromethanicum CM4] gi|240137260|ref|YP_002961729.1| Flagellar protein FlaF [Methylobacterium extorquens AM1] gi|163661731|gb|ABY29098.1| flagellar FlaF family protein [Methylobacterium extorquens PA1] gi|218521033|gb|ACK81618.1| flagellar FlaF family protein [Methylobacterium chloromethanicum CM4] gi|240007226|gb|ACS38452.1| Flagellar protein FlaF [Methylobacterium extorquens AM1] Length = 116 Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats. Identities = 34/114 (29%), Positives = 60/114 (52%), Gaps = 1/114 (0%) Query: 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEA-LFYTSRVWVVFIQ 60 R Y E ++++ R+RE DR++S L A + A A + +W V I Sbjct: 3 RLSYAEIMEDAPDLGRERERDAFDRALSQLRTAEAQGAAAGPARSAAVGSIQDLWNVLIA 62 Query: 61 DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 DL+ +N LP+ ++ +L++IGLW ++E + S +I+V + +RDGL+ Sbjct: 63 DLLDPENALPESLRADLVAIGLWNMREAGEVLSAPDRSLAALIEVNTSIRDGLQ 116 >gi|163794166|ref|ZP_02188139.1| flagellar FlaF family protein [alpha proteobacterium BAL199] gi|159180780|gb|EDP65299.1| flagellar FlaF family protein [alpha proteobacterium BAL199] Length = 124 Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 28/103 (27%), Positives = 52/103 (50%), Gaps = 1/103 (0%) Query: 12 SSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQ 71 ++ R E+ +L + L A + ++ + A+ +VW VF+ DL DN LPQ Sbjct: 15 ATQNGRDLEYRLLAQVTGALIKARDGMATLQERLNAILRNEKVWGVFLADLNHPDNGLPQ 74 Query: 72 EVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 ++K + S+ L+V+KE + + + D+I + + GLK Sbjct: 75 QLKGGIASLALFVMKETQLVIDTNAP-LDDLILINRQIMAGLK 116 >gi|209963551|ref|YP_002296466.1| flagellar protein FlaF, putative [Rhodospirillum centenum SW] gi|209957017|gb|ACI97653.1| flagellar protein FlaF, putative [Rhodospirillum centenum SW] Length = 124 Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 54/110 (49%), Gaps = 3/110 (2%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63 Y ++++++ + R+ EH + + + L + + P++ + A+ R+W + DL Sbjct: 10 AYRQSMRDT-VSPRQLEHRVFSQVTAELEVCTRQ-PDAFATIRAVDRNRRLWGALVTDLA 67 Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 DN LP +K LIS+GLWV + + + +I+V V GL Sbjct: 68 QPDNLLPDALKAGLISLGLWVNRYSSEVL-TEGRPLNPLIEVNRTVMQGL 116 >gi|92116893|ref|YP_576622.1| flagellar biosynthesis regulatory protein FlaF [Nitrobacter hamburgensis X14] gi|91799787|gb|ABE62162.1| flagellar FlaF [Nitrobacter hamburgensis X14] Length = 121 Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 1/112 (0%) Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDL 62 Q Y T Q SS +L + L I + K AL + R+W +F+ Sbjct: 6 QAYARTAQTSSSPREIEAQALLKAARQLQEIQNNWTGPDKNMHNALLFNRRLWSIFMSAA 65 Query: 63 VSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNS-YQDIIDVISIVRDGL 113 S+DN P EV+ N+ +IG++V+K+ ++ N + + +ID+ + GL Sbjct: 66 DSDDNQQPLEVRQNIANIGVFVMKQTIDMQMNPDPAKLKSLIDINCNLAAGL 117 >gi|296531759|ref|ZP_06894581.1| possible flaF protein [Roseomonas cervicalis ATCC 49957] gi|296267898|gb|EFH13703.1| possible flaF protein [Roseomonas cervicalis ATCC 49957] Length = 141 Score = 97.3 bits (241), Expect = 6e-19, Method: Composition-based stats. Identities = 35/111 (31%), Positives = 49/111 (44%), Gaps = 2/111 (1%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63 Y I+ + + R E+ +L R+ SLL A + EA+ VW F DL Sbjct: 23 AYGSVIR-GTEDPRDIEYRVLARATSLLEAAQRPNAGPSALPEAIHENRMVWTAFAADLA 81 Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 +E+N K L+S+ WV E ER+ R S + DV V GLK Sbjct: 82 AEENGWDMVTKGRLLSLARWVFAESERVLRG-GRSPHALCDVNRAVMAGLK 131 >gi|86139474|ref|ZP_01058043.1| flagellar protein FlaF, putative [Roseobacter sp. MED193] gi|85823977|gb|EAQ44183.1| flagellar protein FlaF, putative [Roseobacter sp. MED193] Length = 128 Score = 94.2 bits (233), Expect = 5e-18, Method: Composition-based stats. Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 7/103 (6%) Query: 18 KREHWILDRSISLLSIAHKSLPNSKQA------VEALFYTSRVWVVFIQDLVSEDNHLPQ 71 +E+ I+ RS L AHK +K EAL ++W +F DL S DN LPQ Sbjct: 23 DKEYDIVARSTQNLLAAHKVASANKGTEGFKVLTEALHKNRKMWNIFTADLASSDNQLPQ 82 Query: 72 EVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 +VK NL + + + ++ K+ + + +I++ V GL+ Sbjct: 83 DVKDNLFYLAEFTRQHTSKVLSRKA-NVRALIEINMAVLRGLR 124 >gi|75675299|ref|YP_317720.1| flagellar biosynthesis regulatory protein FlaF [Nitrobacter winogradskyi Nb-255] gi|74420169|gb|ABA04368.1| putative flagellar protein FlaF [Nitrobacter winogradskyi Nb-255] Length = 121 Score = 92.3 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 1/112 (0%) Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDL 62 Q Y T Q SS +L + L + K +AL + R+W +F+ Sbjct: 6 QAYARTAQTSSSPREIEAQALLKAARQLREVQDKWEGPDNDMHKALLFNRRLWSIFMSAA 65 Query: 63 VSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNS-YQDIIDVISIVRDGL 113 S+ N P EV+ N+ +IG++V+K+ ++ N + +ID+ + GL Sbjct: 66 DSDSNPQPLEVRQNIANIGVFVMKQTVDMQLNPDPAKLTALIDINCNLAAGL 117 >gi|85715037|ref|ZP_01046022.1| putative flagellar protein FlaF [Nitrobacter sp. Nb-311A] gi|85698234|gb|EAQ36106.1| putative flagellar protein FlaF [Nitrobacter sp. Nb-311A] Length = 121 Score = 91.5 bits (226), Expect = 3e-17, Method: Composition-based stats. Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 1/112 (0%) Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDL 62 Q Y T Q SS +L + L I +AL + R+W +F+ Sbjct: 6 QAYARTAQTSSSPREIEAQALLKAARQLREIQEHWKGPDNDMHKALLFNRRLWSIFMSAA 65 Query: 63 VSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNS-YQDIIDVISIVRDGL 113 SE N P EV+ N+ +IG++V+K+ ++ N + +ID+ + GL Sbjct: 66 DSESNPQPLEVRQNIANIGVFVMKQTVDMQLNPDPAKLTALIDINCNLAAGL 117 >gi|302383513|ref|YP_003819336.1| flagellar FlaF family protein [Brevundimonas subvibrioides ATCC 15264] gi|302194141|gb|ADL01713.1| flagellar FlaF family protein [Brevundimonas subvibrioides ATCC 15264] Length = 120 Score = 90.8 bits (224), Expect = 6e-17, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 3/114 (2%) Query: 1 MRQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNS-KQAVEALFYTSRVWVVFI 59 M + Y + + R+ E+ + + L A P+ K ++AL + R+W V Sbjct: 1 MLKAYAQ-ASTRTETPREMEYRLFGQVTRALMHAATVDPSDVKTRIDALDWNRRLWSVLA 59 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 D N L ++ +ISI L+V + I R + ++ +ID+ + GL Sbjct: 60 TDCSDPSNQLNTPLRAQIISISLFVGRHSSAIMRGE-EDFEALIDINRSIMQGL 112 >gi|315500093|ref|YP_004088896.1| flagellar flaf family protein [Asticcacaulis excentricus CB 48] gi|315418105|gb|ADU14745.1| flagellar FlaF family protein [Asticcacaulis excentricus CB 48] Length = 136 Score = 89.2 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 53/112 (47%), Gaps = 3/112 (2%) Query: 3 QYYHETIQESSIECRKREHWILDRSI-SLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQD 61 Q Y +T Q S + R+ E+ + + +L+ A + ++AL + R+W V D Sbjct: 4 QAYQKTAQRS-EDPRQTEYRLFGQVTRALMEAAELDRSEVSRRMDALDWNRRLWSVLGTD 62 Query: 62 LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 N LP+ ++ ++S+ +WV + + R + +I+V ++ GL Sbjct: 63 CALPGNGLPETLRAQIVSLSIWVNRHTSAVMRGQEE-IAPLIEVNRLIMQGL 113 >gi|163794169|ref|ZP_02188142.1| flagellar FlaF family protein [alpha proteobacterium BAL199] gi|159180783|gb|EDP65302.1| flagellar FlaF family protein [alpha proteobacterium BAL199] Length = 143 Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 60/119 (50%), Gaps = 9/119 (7%) Query: 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNS-------KQAVEALFYTSRV 54 Y TI++++ R E+ +L + S L + + S Q ++AL + ++V Sbjct: 4 YDAYKRTIKQTAAP-RDVEYRLLAQVTSGLMKSKELREGSNRDPRRMAQIMDALNWNNQV 62 Query: 55 WVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 W F++D+ +E N LP+E++ ++S+G+WV +E + + +I V + GL Sbjct: 63 WDAFVEDVGTEGNMLPRELRAAIVSLGIWVTRETALVTSGEG-DIDALIAVNRAIMRGL 120 >gi|260429492|ref|ZP_05783469.1| flagellar biosynthesis regulatory protein FlaF [Citreicella sp. SE45] gi|260420115|gb|EEX13368.1| flagellar biosynthesis regulatory protein FlaF [Citreicella sp. SE45] Length = 125 Score = 87.3 bits (215), Expect = 6e-16, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 50/114 (43%), Gaps = 2/114 (1%) Query: 1 MRQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNS-KQAVEALFYTSRVWVVFI 59 M Q + S+ R E+ + R + A ++ P + Q VEAL+ R+W Sbjct: 6 MAQRAYAENATSTRTDRATEYDLFARVTHRIKAAAEAGPKAYPQLVEALYDNRRLWTTLA 65 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 D+ N LPQE++ + + +V ++ K+ +++V + + GL Sbjct: 66 VDVADPSNKLPQELRAQIFYLSEFVQLHTGKVLARKAR-LAPLLEVNAAIMRGL 118 >gi|295689336|ref|YP_003593029.1| flagellar FlaF family protein [Caulobacter segnis ATCC 21756] gi|295431239|gb|ADG10411.1| flagellar FlaF family protein [Caulobacter segnis ATCC 21756] Length = 120 Score = 87.3 bits (215), Expect = 7e-16, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 52/114 (45%), Gaps = 2/114 (1%) Query: 1 MRQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQ-AVEALFYTSRVWVVFI 59 M ++ + R+ E+ + + L A ++ + ++AL + +VW Sbjct: 1 MSLRAYQQAATRAENPREMEYRLFGQVTRALMEASQAPADDFAKRIDALDWNRKVWSALA 60 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 D DN LP E++ ++IS+ LWV + + K ++ +I++ I+ GL Sbjct: 61 TDCSLPDNQLPMELRASIISLSLWVSRHSSAV-MRKEEEFEPLIEINRIIMQGL 113 >gi|161485648|ref|NP_420272.2| flagellar biosynthesis regulatory protein FlaF [Caulobacter crescentus CB15] gi|221234463|ref|YP_002516899.1| flagellar biosynthesis regulatory protein FlaF [Caulobacter crescentus NA1000] gi|220963635|gb|ACL94991.1| flagellar biosynthesis regulatory protein flaF [Caulobacter crescentus NA1000] Length = 120 Score = 87.3 bits (215), Expect = 7e-16, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 52/114 (45%), Gaps = 2/114 (1%) Query: 1 MRQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQ-AVEALFYTSRVWVVFI 59 M ++ + R+ E+ + + L A ++ + ++AL + +VW Sbjct: 1 MSLRAYQQAATRAENPREMEYRLFGQVTRALMDASQAPADDIATRIDALDWNRKVWSALA 60 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 D +N LP E++ ++IS+ LWV + + K ++ +I++ ++ GL Sbjct: 61 TDCALPENQLPMELRASIISLSLWVGRHSSAV-MRKEEDFEPLIEINRMIMQGL 113 >gi|126738587|ref|ZP_01754292.1| flagellar protein FlaF, putative [Roseobacter sp. SK209-2-6] gi|126720386|gb|EBA17092.1| flagellar protein FlaF, putative [Roseobacter sp. SK209-2-6] Length = 128 Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 54/104 (51%), Gaps = 7/104 (6%) Query: 17 RKREHWILDRSISLLSIAHK--SLPNSKQAV----EALFYTSRVWVVFIQDLVSEDNHLP 70 + E+ ++ R+ L AHK + + + AL ++W +F DL++++N LP Sbjct: 22 KDNEYEVVARATHKLLAAHKVANAKSGPEGFKVLASALHTNRKMWNIFEVDLLAKENQLP 81 Query: 71 QEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 QEVK NL+ + + + ++ K+ + ++++ + + GL+ Sbjct: 82 QEVKTNLLYLAEFTRQHTSKVLSRKA-GIKPLVEINTAIMRGLR 124 >gi|83858827|ref|ZP_00952349.1| flaF protein [Oceanicaulis alexandrii HTCC2633] gi|83853650|gb|EAP91502.1| flaF protein [Oceanicaulis alexandrii HTCC2633] Length = 118 Score = 86.1 bits (212), Expect = 1e-15, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 3/113 (2%) Query: 2 RQYYHETIQESSIECRKREHWILDRSI-SLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQ 60 Q Y +T + + R+ E+ +L L+ + +Q V AL RVW F Sbjct: 3 YQAY-KTASSRTEDPRQTEYRLLGEVTRGLMEVRDAPKSEIRQRVAALDRNRRVWSAFAA 61 Query: 61 DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 D S N+LP ++ +IS+ ++V KE R ++ + +ID+ + GL Sbjct: 62 DCASSHNNLPDSLRAGIISLSIFVSKETSAAMRGET-DVETLIDINRTIMQGL 113 >gi|167646850|ref|YP_001684513.1| flagellar biosynthesis regulatory protein FlaF [Caulobacter sp. K31] gi|167349280|gb|ABZ72015.1| flagellar FlaF family protein [Caulobacter sp. K31] Length = 120 Score = 85.0 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 52/114 (45%), Gaps = 2/114 (1%) Query: 1 MRQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQ-AVEALFYTSRVWVVFI 59 M ++ + R+ E+ + + L A ++ + ++AL + RVW Sbjct: 1 MSLRAYQQTATRTENPREMEYRLFGQVTRALMAASEAPADDIATRIDALDWNRRVWSALA 60 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 D +N LP +++ ++IS+ LWV + + K ++ +I++ ++ GL Sbjct: 61 TDCSLPENTLPVQLRASIISLSLWVGRHSSAV-MRKEEDFEPLIEINRMIMQGL 113 >gi|163738068|ref|ZP_02145484.1| flagellar protein FlaF, putative [Phaeobacter gallaeciensis BS107] gi|161388684|gb|EDQ13037.1| flagellar protein FlaF, putative [Phaeobacter gallaeciensis BS107] Length = 123 Score = 85.0 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 48/100 (48%), Gaps = 2/100 (2%) Query: 16 CRKREHWILDRSISLLSIAHKSL-PNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVK 74 + E+ ++ R + A + P + AL ++W +F ++ S N LP E+K Sbjct: 21 AKNLEYEVIARVTRRMVAAAQKGKPGFTELAAALTDNRKLWSIFSVEVASPGNPLPDELK 80 Query: 75 LNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 L+S+G + + ++ K+ + ++++ + + GL+ Sbjct: 81 AQLLSLGEFTHQHTSKVLARKA-DVRLLVEINTAIMRGLR 119 >gi|114798597|ref|YP_758996.1| putative flagellar biosynthesis regulatory protein [Hyphomonas neptunium ATCC 15444] gi|114738771|gb|ABI76896.1| putative flagellar biosynthesis regulatory protein [Hyphomonas neptunium ATCC 15444] Length = 128 Score = 84.6 bits (208), Expect = 4e-15, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 52/113 (46%), Gaps = 3/113 (2%) Query: 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAV-EALFYTSRVWVVFIQ 60 + Y + Q + R E+ + ++ L H + A +A++ ++W + Sbjct: 6 YKAYGQVTQRT-ATGRALEYAVFEQITRDLQSVHDDGGANTGAWGDAIYRNLQLWTIIAT 64 Query: 61 DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 DL+S +N LP E K LIS+ +V + +I + +DII+V + GL Sbjct: 65 DLLSAENALPDETKAGLISLSEFVRRTSMKILSG-TEGLEDIIEVNRTIMAGL 116 >gi|254465480|ref|ZP_05078891.1| flagellar protein FlaF, putative [Rhodobacterales bacterium Y4I] gi|206686388|gb|EDZ46870.1| flagellar protein FlaF, putative [Rhodobacterales bacterium Y4I] Length = 123 Score = 84.2 bits (207), Expect = 5e-15, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 48/100 (48%), Gaps = 2/100 (2%) Query: 16 CRKREHWILDRSISLLSIAHKSLPNSK-QAVEALFYTSRVWVVFIQDLVSEDNHLPQEVK 74 + E+ ++ R L A + + + +AL ++W +F DL + N LP +K Sbjct: 21 AKNFEYEVVTRVTRRLITAAQKGSDGFNELAQALNDNRKLWSIFTADLAMKSNPLPDNLK 80 Query: 75 LNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 NL + + + ++ + K+ + + ++++ + + GL+ Sbjct: 81 QNLFELAEFTRQHTSKVLQRKA-NVRPLVEINTAILRGLR 119 >gi|120266|sp|P21295|FLAF_CAUCR RecName: Full=Protein flaF gi|40421|emb|CAA33231.1| unnamed protein product [Caulobacter crescentus CB15] gi|13422828|gb|AAK23440.1| flaF protein [Caulobacter crescentus CB15] Length = 102 Score = 83.4 bits (205), Expect = 9e-15, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 46/95 (48%), Gaps = 2/95 (2%) Query: 20 EHWILDRSISLLSIAHKSLPNSKQ-AVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLI 78 E+ + + L A ++ + ++AL + +VW D +N LP E++ ++I Sbjct: 2 EYRLFGQVTRALMDASQAPADDIATRIDALDWNRKVWSALATDCALPENQLPMELRASII 61 Query: 79 SIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 S+ LWV + + K ++ +I++ ++ GL Sbjct: 62 SLSLWVGRHSSAV-MRKEEDFEPLIEINRMIMQGL 95 >gi|99082813|ref|YP_614967.1| flagellar biosynthesis regulatory protein FlaF [Ruegeria sp. TM1040] gi|99039093|gb|ABF65705.1| FlaF protein [Ruegeria sp. TM1040] Length = 123 Score = 82.7 bits (203), Expect = 1e-14, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 2/100 (2%) Query: 16 CRKREHWILDRSISLLSIAHKSLPNS-KQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVK 74 R E+ IL R + +A + K V A+ ++W +F DL E N LP E+K Sbjct: 21 ARNTEYEILARITHRMIVADSKGSDGFKDLVAAVSDNRKLWTLFTSDLAKEGNKLPTELK 80 Query: 75 LNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 L + + + ++ K+ S Q ++++ + + GL+ Sbjct: 81 QRLFHLARFTREHTSKVLARKA-SVQPLVEINTAIMRGLR 119 >gi|254500444|ref|ZP_05112595.1| Flagellar protein FlaF [Labrenzia alexandrii DFL-11] gi|222436515|gb|EEE43194.1| Flagellar protein FlaF [Labrenzia alexandrii DFL-11] Length = 125 Score = 82.7 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 56/115 (48%), Gaps = 3/115 (2%) Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAHK--SLPNSKQAVEALFYTSRVWVVFIQ 60 Q Y +T Q + + R+ E +L ++ + L + + + +AL Y ++W V + Sbjct: 7 QAYQKTSQAAPVSPRELEATLLMKAAARLQLIKDEWDDLSLAEVDDALIYNRKLWTVLVT 66 Query: 61 DLVSEDNHLPQEVKLNLISIGLWVLKEC-ERIRRNKSNSYQDIIDVISIVRDGLK 114 SE++ LP E+K N+ S+G++V K+ I +I + + +GL+ Sbjct: 67 SATSEESSLPLEIKNNIGSLGVFVFKQTMTVITTQDPEKLGALISINRTIAEGLR 121 >gi|294679040|ref|YP_003579655.1| flagellar FlaF family protein [Rhodobacter capsulatus SB 1003] gi|294477860|gb|ADE87248.1| flagellar FlaF family protein [Rhodobacter capsulatus SB 1003] Length = 125 Score = 82.3 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 2/99 (2%) Query: 17 RKREHWILDRSISLLSIAHK-SLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKL 75 R E+ I R L A N V AL+ R+W D+ DN LP ++ Sbjct: 22 RGTEYEIFARVTHRLKQAAGLDKSNFPAVVRALYDNRRLWTTLAVDVALPDNELPDTLRA 81 Query: 76 NLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 + + + ++ + ++ S +ID+ + + GL+ Sbjct: 82 RIFYLNQFTQAHSAKVLKGEA-SIDVLIDINTAIMRGLR 119 >gi|259418039|ref|ZP_05741958.1| flagellar biosynthesis regulatory protein FlaF [Silicibacter sp. TrichCH4B] gi|259346945|gb|EEW58759.1| flagellar biosynthesis regulatory protein FlaF [Silicibacter sp. TrichCH4B] Length = 123 Score = 81.9 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 48/100 (48%), Gaps = 2/100 (2%) Query: 16 CRKREHWILDRSISLLSIAHKSLPNS-KQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVK 74 R E+ IL R + +A+ + K V A+ ++W +F DL + N LP E+K Sbjct: 21 ARNTEYEILARITHRMIVANGKGSDGFKDLVAAVSDNRKLWTLFTSDLAKDGNKLPDELK 80 Query: 75 LNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 L + + + ++ K+ S Q ++++ + + GL+ Sbjct: 81 QRLFHLARFTREHSSKVLARKA-SVQPLVEINTAIMRGLR 119 >gi|218507949|ref|ZP_03505827.1| flagellar biosynthesis regulatory protein FlaF [Rhizobium etli Brasil 5] Length = 98 Score = 81.5 bits (200), Expect = 3e-14, Method: Composition-based stats. Identities = 27/61 (44%), Positives = 41/61 (67%), Gaps = 1/61 (1%) Query: 1 MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M Q+ Y E +Q+S + ++RE +LDRSI LL++A ++A+E LFYT RVW+ FI Sbjct: 1 MYQFSYAEVMQDSVADAKEREWQVLDRSIELLALARDKDTYGREAIEVLFYTRRVWISFI 60 Query: 60 Q 60 + Sbjct: 61 R 61 >gi|254418530|ref|ZP_05032254.1| Flagellar protein FlaF [Brevundimonas sp. BAL3] gi|196184707|gb|EDX79683.1| Flagellar protein FlaF [Brevundimonas sp. BAL3] Length = 121 Score = 80.7 bits (198), Expect = 6e-14, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 46/112 (41%), Gaps = 3/112 (2%) Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQ-AVEALFYTSRVWVVFIQD 61 Q Y + R E+ + + L A ++AL + R+W D Sbjct: 4 QAYKA-ATSRAETPRDLEYRLFGQVTRALVHASTVDERDLATRIDALDWNRRLWSTLASD 62 Query: 62 LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 N LP ++ +IS+ L++ + + R + +QD+I++ ++ GL Sbjct: 63 CGDPANVLPASLRAQIISLSLFINRHSSAVMRGEET-FQDLIEINRMMMQGL 113 >gi|146341919|ref|YP_001206967.1| flagellar biosynthesis regulatory protein FlaF [Bradyrhizobium sp. ORS278] gi|146194725|emb|CAL78750.1| conserved hypothetical protein; putative FlaF protein [Bradyrhizobium sp. ORS278] Length = 96 Score = 80.7 bits (198), Expect = 7e-14, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 47/91 (51%), Gaps = 1/91 (1%) Query: 24 LDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLW 83 L + L + + +AL + R+W +F+ + +EDN P +++ N+ +IG++ Sbjct: 2 LKAARQLQEVQANWNGPDRNMYKALLFNRRLWTIFMSAMEAEDNPNPLDIRQNIANIGVF 61 Query: 84 VLKECERIRRNKSNS-YQDIIDVISIVRDGL 113 V+K+ ++ + + + +ID+ + GL Sbjct: 62 VMKQTIEMQMDPDPAKLKSLIDINCHIAAGL 92 >gi|149912825|ref|ZP_01901359.1| flagellar protein FlaF, putative [Roseobacter sp. AzwK-3b] gi|149813231|gb|EDM73057.1| flagellar protein FlaF, putative [Roseobacter sp. AzwK-3b] Length = 124 Score = 80.3 bits (197), Expect = 7e-14, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 48/103 (46%), Gaps = 1/103 (0%) Query: 12 SSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQ 71 ++ R E+ R L+ A K+ + + AL+ R+W++ D+ + N LP Sbjct: 17 ATNTPRDTEYDAFARVTRRLTAAAKTPGDVPELAAALYDNRRLWMILASDVALKSNPLPG 76 Query: 72 EVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 ++K LI + + ++ K+ + + +I+V V GL+ Sbjct: 77 DLKARLIYLAEFAEVHGRKVLAGKATA-EPLIEVNRAVMQGLQ 118 >gi|114762155|ref|ZP_01441623.1| flagellar protein FlaF, putative [Pelagibaca bermudensis HTCC2601] gi|114545179|gb|EAU48182.1| flagellar protein FlaF, putative [Roseovarius sp. HTCC2601] Length = 125 Score = 80.3 bits (197), Expect = 8e-14, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 51/114 (44%), Gaps = 2/114 (1%) Query: 1 MRQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQA-VEALFYTSRVWVVFI 59 M Q + S+ R E+ +L R + A ++ P + V AL+ R+W Sbjct: 6 MAQRAYTQPTTSTRTDRAIEYDLLARVTHRIKSAAEAGPKAYPRLVRALYDNRRLWTALA 65 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 D+ S +N LPQE++ + + +V ++ K+ +++V + + GL Sbjct: 66 VDVASTENALPQELRAQIFYLAEFVQLHTGKVLARKAR-LAPLLEVNAAILRGL 118 >gi|119384358|ref|YP_915414.1| flagellar FlaF family protein [Paracoccus denitrificans PD1222] gi|119374125|gb|ABL69718.1| flagellar FlaF family protein [Paracoccus denitrificans PD1222] Length = 121 Score = 80.0 bits (196), Expect = 9e-14, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 47/98 (47%), Gaps = 2/98 (2%) Query: 17 RKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLN 76 R E++ + L A +S +EA ++++W + +L+ +N LP ++K Sbjct: 21 RDNEYFAFSQVTQTLKRACQSGDR-YLMIEAAHSSNQLWTIVATNLMHPENTLPSDIKAG 79 Query: 77 LISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 L+S+ + LK+ + + + +I+V + GL+ Sbjct: 80 LLSLAFFSLKQGHHVISSGVPA-DPLIEVNMRIMRGLR 116 >gi|163742536|ref|ZP_02149922.1| flagellar protein FlaF, putative [Phaeobacter gallaeciensis 2.10] gi|161384121|gb|EDQ08504.1| flagellar protein FlaF, putative [Phaeobacter gallaeciensis 2.10] Length = 88 Score = 80.0 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 44/85 (51%), Gaps = 1/85 (1%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECE 89 +++ A K P + AL ++W +F ++ S N LP E+K L+S+G + + Sbjct: 1 MVAAAQKGKPGFTELAAALTDNRKLWSIFSVEVASPGNPLPDELKAQLLSLGEFTHQHTS 60 Query: 90 RIRRNKSNSYQDIIDVISIVRDGLK 114 ++ K+ + ++++ + + GL+ Sbjct: 61 KVLARKA-DVRLLVEINTAIMRGLR 84 >gi|27380953|ref|NP_772482.1| flagellar biosynthesis regulatory protein FlaF [Bradyrhizobium japonicum USDA 110] gi|27354119|dbj|BAC51107.1| bll5842 [Bradyrhizobium japonicum USDA 110] Length = 122 Score = 79.6 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 54/111 (48%), Gaps = 1/111 (0%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63 Y ++ +L + L + + P S+Q ++AL + ++W +F+ + + Sbjct: 8 AYARVATTTASPRDIEAQTLLKAANKLQDAVNNADPLSEQTMQALMFNRKLWTIFLSEAM 67 Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKS-NSYQDIIDVISIVRDGL 113 ++N P +V+ + +I ++VL + ++ + + ++ +I++ + GL Sbjct: 68 RDNNPQPIDVRQKIANISVFVLSQTAALQMSPQFDHFRPLIEINRNIAAGL 118 >gi|149203154|ref|ZP_01880125.1| flagellar protein FlaF, putative [Roseovarius sp. TM1035] gi|149143700|gb|EDM31736.1| flagellar protein FlaF, putative [Roseovarius sp. TM1035] Length = 125 Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 2/112 (1%) Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVE-ALFYTSRVWVVFIQD 61 Q + S R E+ R L A P ++ AL R+W + D Sbjct: 8 QSAYRDQSRSVRTDRGLEYDAFARITQRLVHAAGQDPRDIASLAVALHDNRRLWTILATD 67 Query: 62 LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 + N LPQ ++ ++ + + + N + S Q +ID+ + + GL Sbjct: 68 VADPQNPLPQSLRAQVVYLAQFCHHHSSAVL-NTNASLQPLIDINTAIMRGL 118 >gi|254475812|ref|ZP_05089198.1| flagellar protein FlaF, putative [Ruegeria sp. R11] gi|214030055|gb|EEB70890.1| flagellar protein FlaF, putative [Ruegeria sp. R11] Length = 123 Score = 78.8 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 51/100 (51%), Gaps = 2/100 (2%) Query: 16 CRKREHWILDRSISLLSIAHKSL-PNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVK 74 + E+ ++ R + A + P K+ VEAL ++W +F ++ + +N LP+++K Sbjct: 21 AKNLEYEVIARITRRMVAAAQKGRPGFKELVEALKDNRKLWSIFADEVANPENPLPEDLK 80 Query: 75 LNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 L+ + + + ++ K+ + ++++ + + GL+ Sbjct: 81 SQLLYLREFTNQHTSKVMARKA-DVRMLVEINTAIMRGLR 119 >gi|197104849|ref|YP_002130226.1| Flagellar biosynthesis regulator FlaF [Phenylobacterium zucineum HLK1] gi|196478269|gb|ACG77797.1| Flagellar biosynthesis regulator FlaF [Phenylobacterium zucineum HLK1] Length = 104 Score = 78.8 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 48/95 (50%), Gaps = 2/95 (2%) Query: 20 EHWILDRSI-SLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLI 78 E+ + + +L+ A + K ++AL + RVW V D N LP+E++ ++I Sbjct: 2 EYRLFAQVTRALMEAAKLPADDLKGRMDALDWNRRVWSVLGADCQQTGNGLPRELRASII 61 Query: 79 SIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 S+ +WV K + R + + +I++ ++ GL Sbjct: 62 SLSIWVGKHTSLVIRQQEE-IEPLIEINRMIMQGL 95 >gi|209967004|ref|YP_002299919.1| flagellar protein FlaF, putative [Rhodospirillum centenum SW] gi|209960470|gb|ACJ01107.1| flagellar protein FlaF, putative [Rhodospirillum centenum SW] Length = 138 Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 47/112 (41%), Gaps = 6/112 (5%) Query: 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQD 61 Q T + + E L A S P+ + AL ++W+ + D Sbjct: 6 YQQRAATQET----AQSLELRAFGFVTQGLRQASTS-PDPTARIRALHRNHQLWLTLVSD 60 Query: 62 LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 L + +N LP+E+K LIS+G+W ++ R +IDV + + G+ Sbjct: 61 LATPENPLPEELKGRLISLGMWSMRYSLRAMEEDIP-VDPLIDVNTEIAGGI 111 >gi|90423003|ref|YP_531373.1| flagellar biosynthesis regulatory protein FlaF [Rhodopseudomonas palustris BisB18] gi|90105017|gb|ABD87054.1| flagellar FlaF [Rhodopseudomonas palustris BisB18] Length = 121 Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 47/112 (41%), Gaps = 1/112 (0%) Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDL 62 Q Y T Q+ + +L + L + AL + ++W +F+ D Sbjct: 6 QAYARTAQQIASPRDIEAQALLKAARQLQDAVTNWNESDSGLNAALIFNRKLWSIFVSDA 65 Query: 63 VSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNS-YQDIIDVISIVRDGL 113 +S+ N ++ N+ +IG++VL +C ++ +I++ + GL Sbjct: 66 ISDANPEAIAIRQNIANIGIFVLTQCAALQVKPERDRLHALIEINRNIATGL 117 >gi|329889088|ref|ZP_08267431.1| protein flaF [Brevundimonas diminuta ATCC 11568] gi|328844389|gb|EGF93953.1| protein flaF [Brevundimonas diminuta ATCC 11568] Length = 120 Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 50/114 (43%), Gaps = 2/114 (1%) Query: 1 MRQYYHETIQESSIECRKREHWILDRSI-SLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M ++T + R+ E+ + + +L+ A + ++AL + R+W Sbjct: 1 MSLQAYKTAATRAESPREMEYRLFGQVTRALMHAATLDKSDVAGRMDALDWNRRLWSTLA 60 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 N +PQ ++ IS+ L+V + + R + + + +ID+ ++ GL Sbjct: 61 TACSDSANAMPQAMRAQFISLSLFVNRNTSEVMRGE-DDFSTLIDINRMIMQGL 113 >gi|110677571|ref|YP_680578.1| flagellar biosynthesis regulatory protein FlaF [Roseobacter denitrificans OCh 114] gi|109453687|gb|ABG29892.1| flagellar protein, putative [Roseobacter denitrificans OCh 114] Length = 123 Score = 77.7 bits (190), Expect = 5e-13, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 49/112 (43%), Gaps = 2/112 (1%) Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDL 62 Q + Q R E+ ++ R + A + + EAL +++W D+ Sbjct: 8 QRAYAPTQAPIKTARSTEYEVIARISHRMKRAMQQD-DFPALAEALHENNKLWTTLAIDV 66 Query: 63 VSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 + DN LP E++ ++ + + + ++ K+ + ++++ + + GLK Sbjct: 67 GNPDNLLPDELRARIVYLADFTRQHSHKV-MRKTETAVPLLEINAAILKGLK 117 >gi|85706200|ref|ZP_01037295.1| flagellar protein FlaF, putative [Roseovarius sp. 217] gi|85669364|gb|EAQ24230.1| flagellar protein FlaF, putative [Roseovarius sp. 217] Length = 124 Score = 77.7 bits (190), Expect = 5e-13, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 2/99 (2%) Query: 16 CRKREHWILDRSISLLSIAHKSLPNS-KQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVK 74 R E+ R L +A AL R+W + D+ DN LP+E++ Sbjct: 21 ERGLEYDAFARITHRLGLAAAKGREDIHNLAAALHDNRRLWTILATDVADPDNPLPKELR 80 Query: 75 LNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 ++ + + + + S Q +ID+ + + GL Sbjct: 81 ARIVYLAQFSHHHSTMVLNGDA-SIQPLIDINTAMMRGL 118 >gi|115523546|ref|YP_780457.1| flagellar biosynthesis regulatory protein FlaF [Rhodopseudomonas palustris BisA53] gi|115517493|gb|ABJ05477.1| flagellar FlaF family protein [Rhodopseudomonas palustris BisA53] Length = 121 Score = 77.7 bits (190), Expect = 5e-13, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 50/112 (44%), Gaps = 1/112 (0%) Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDL 62 Q Y T Q+ + +L + L + EAL + ++W +F+ D Sbjct: 6 QAYARTAQKVATPRDIEAQALLKAARKLQDVMATWPEGDVDFNEALMFNRKLWSLFVSDA 65 Query: 63 VSEDNHLPQEVKLNLISIGLWVLKECERI-RRNKSNSYQDIIDVISIVRDGL 113 + ++N E++ N+ +IG++VL + + + + Q +ID+ + GL Sbjct: 66 LRDENPESIEIRQNIANIGIFVLTQSAALALKPEVERLQALIDINRNIAAGL 117 >gi|89056693|ref|YP_512144.1| flagellar biosynthesis regulatory protein FlaF [Jannaschia sp. CCS1] gi|88866242|gb|ABD57119.1| flagellar protein FlaF putative [Jannaschia sp. CCS1] Length = 124 Score = 77.7 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 43/98 (43%), Gaps = 1/98 (1%) Query: 16 CRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKL 75 R E+ + L+ + ++ + AL ++W + DL DN LPQ ++ Sbjct: 21 ERGTEYAAFQSVTARLNKSRRADAPMSERAAALHDNRKLWTILASDLADSDNGLPQSLRA 80 Query: 76 NLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 L + + L + + ++++ +++V + V GL Sbjct: 81 QLFYLAEFSLLQSRKALS-EADALTALVEVNTAVMRGL 117 >gi|222053750|ref|YP_002536112.1| flagellar FlaF family protein [Geobacter sp. FRC-32] gi|221563039|gb|ACM19011.1| flagellar FlaF family protein [Geobacter sp. FRC-32] Length = 128 Score = 77.3 bits (189), Expect = 7e-13, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 56/113 (49%), Gaps = 4/113 (3%) Query: 6 HETIQESSIECRKREHWILDRSISLLSIAH-KSLPNSKQAV--EALFYTSRVWVVFIQDL 62 + IQ+ ++ R+ E +L R+ +L ++ EAL + ++W F +L Sbjct: 9 YANIQKEALTGRELEASVLTRAAQMLKHCQDNWNAPDREKKLQEALKFNQKIWSFFQAEL 68 Query: 63 VSEDNHLPQEVKLNLISIGLWVLKEC-ERIRRNKSNSYQDIIDVISIVRDGLK 114 DN LP++++ +++S+ L+V K E I +S +ID+ + GL+ Sbjct: 69 SVPDNPLPKKLREDILSLSLFVDKRIFEIIAFPESEKLTIVIDINMNIAAGLR 121 >gi|56698281|ref|YP_168654.1| flagellar biosynthesis regulatory protein FlaF [Ruegeria pomeroyi DSS-3] gi|56680018|gb|AAV96684.1| flagellar protein FlaF, putative [Ruegeria pomeroyi DSS-3] Length = 125 Score = 77.3 bits (189), Expect = 7e-13, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 52/114 (45%), Gaps = 3/114 (2%) Query: 2 RQYYHETIQESSIECRKREHWILDRSISLL-SIAHKSLPNSKQAVEALFYTSRVWVVFIQ 60 RQ Y + R E+ +L R + S A + + VEAL +R+W V Sbjct: 8 RQAYSA-ASAPTRTPRNMEYEVLSRITHRMHSAAKRGRAGFGELVEALHENNRLWGVLAA 66 Query: 61 DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 ++ +N LP +++ L + + ++ R ++ S + ++++ + V GL+ Sbjct: 67 NVAEGENALPPDLRARLFYLAEFTQVHTSKVLRREA-SPRPLLEINTAVLRGLR 119 >gi|310816822|ref|YP_003964786.1| flagellar biosynthesis regulatory protein FlaF [Ketogulonicigenium vulgare Y25] gi|308755557|gb|ADO43486.1| flagellar biosynthesis regulatory protein FlaF [Ketogulonicigenium vulgare Y25] Length = 123 Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 3/99 (3%) Query: 15 ECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVK 74 + R E I R + L A N V+AL R+W D+ S N LP +++ Sbjct: 20 DTRSTEQAIFSRITAALIAAE--GANFPTKVKALHDNRRLWTWLAADVASAQNQLPADLR 77 Query: 75 LNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 L + + L ++ R + +ID+ + GL Sbjct: 78 ARLFYLAEFTLDHSSKVLR-EGADLAPLIDINRAMLLGL 115 >gi|307945681|ref|ZP_07661017.1| protein FlaF [Roseibium sp. TrichSKD4] gi|307771554|gb|EFO30779.1| protein FlaF [Roseibium sp. TrichSKD4] Length = 97 Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 1/86 (1%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKEC- 88 L + Q +AL Y ++W + + + +N LPQE+K N+ S+G++V K+ Sbjct: 8 QLVKDEWQQTSLAQRDDALTYNRKLWTILVTSATNGENPLPQEIKNNIASLGVFVFKQTM 67 Query: 89 ERIRRNKSNSYQDIIDVISIVRDGLK 114 E + + N +I + + +GL+ Sbjct: 68 EAMTDEEGNKLNSLISINRAIAEGLR 93 >gi|86750907|ref|YP_487403.1| flagellar biosynthesis regulatory protein FlaF [Rhodopseudomonas palustris HaA2] gi|86573935|gb|ABD08492.1| Flagellar FlaF [Rhodopseudomonas palustris HaA2] Length = 122 Score = 76.1 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 50/113 (44%), Gaps = 2/113 (1%) Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEA-LFYTSRVWVVFIQD 61 Q Y T Q ++ +L + L + ++A L + ++W +F+ D Sbjct: 6 QAYARTAQRTASPREIEAQALLKAARQLQDVVTSWDERGAIGLDAALMFNRKLWSIFVSD 65 Query: 62 LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKS-NSYQDIIDVISIVRDGL 113 + +DN E++ N+ +IG++VL + ++ + +I++ + GL Sbjct: 66 AMRDDNPQTLEIRQNIANIGVFVLSQSTALQMSPQVEPLNALIEINRNIAAGL 118 >gi|254294686|ref|YP_003060709.1| flagellar FlaF family protein [Hirschia baltica ATCC 49814] gi|254043217|gb|ACT60012.1| flagellar FlaF family protein [Hirschia baltica ATCC 49814] Length = 134 Score = 76.1 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 46/112 (41%), Gaps = 3/112 (2%) Query: 3 QYYHETIQESSIECRKREHWILDRSI-SLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQD 61 Q Y +T + + R E + L+ + V++L +VW D Sbjct: 4 QAYQKTA-NRTADPRDVEFRLFAEVTRDLMEATKAEKHEISKVVKSLDKNRQVWNAMAMD 62 Query: 62 LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 N LP +++ +IS+ L+V + RN+S + +ID+ + GL Sbjct: 63 CAQPGNALPDDLRAGIISLSLFVNRHTSEASRNRSE-IETLIDINRNIMQGL 113 >gi|299131798|ref|ZP_07024993.1| flagellar FlaF family protein [Afipia sp. 1NLS2] gi|298591935|gb|EFI52135.1| flagellar FlaF family protein [Afipia sp. 1NLS2] Length = 121 Score = 76.1 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 44/111 (39%), Gaps = 1/111 (0%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63 Y Q +S +L + L + AL + ++W + + + Sbjct: 7 AYARVAQTTSSPREIEAQALLKAARQLQDVMSNWGKAGTDVSGALLFNRKLWSILLSAVT 66 Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNS-YQDIIDVISIVRDGL 113 S+++ E++ N+ +IG +VL + ++ + +I++ + GL Sbjct: 67 SDESPQSIEIRQNIANIGTFVLSQTAEMQIAPKPELLKPLIEINCNLAAGL 117 >gi|163733163|ref|ZP_02140607.1| flagellar protein, putative [Roseobacter litoralis Och 149] gi|161393698|gb|EDQ18023.1| flagellar protein, putative [Roseobacter litoralis Och 149] Length = 123 Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 48/112 (42%), Gaps = 2/112 (1%) Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDL 62 Q + Q R E+ ++ R + A + + EAL +++W D+ Sbjct: 8 QRAYAPTQAPIKTARSTEYEVIARISHRMKRAMQQD-DFPALAEALHENNKLWTTLAIDV 66 Query: 63 VSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 + DN LP E++ ++ + + ++ K+ + ++++ + + GLK Sbjct: 67 GNPDNLLPDELRARIVYLADFTRLHSHKV-MRKTETAVPLLEINAAILKGLK 117 >gi|114765256|ref|ZP_01444388.1| flaF protein [Pelagibaca bermudensis HTCC2601] gi|114542391|gb|EAU45419.1| flaF protein [Roseovarius sp. HTCC2601] Length = 145 Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 50/121 (41%), Gaps = 13/121 (10%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAV-----------EALFYTS 52 Y +TI+ES ++ E + R + + ++ +A+ Sbjct: 5 AYKQTIRES-ASPKQIEARVFARITGSMEQHRANWLAARDKFARTAVLAHGLRDAVAENR 63 Query: 53 RVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDG 112 +W DL E+N LP E++ NL+SI +WV + C + + +IDV + G Sbjct: 64 VLWSRLRTDLTDENNQLPAELRANLLSIAMWVDRTCGVVI-GGGDGLPALIDVNQNILGG 122 Query: 113 L 113 L Sbjct: 123 L 123 >gi|209884515|ref|YP_002288372.1| flagellar FlaF [Oligotropha carboxidovorans OM5] gi|209872711|gb|ACI92507.1| flagellar FlaF [Oligotropha carboxidovorans OM5] Length = 121 Score = 75.3 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 17/111 (15%), Positives = 44/111 (39%), Gaps = 1/111 (0%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63 Y Q +S +L + L + AL + ++W + + + Sbjct: 7 AYARVAQTTSSPREIEAQALLKAARQLQDVMSNWGKADVDVSGALLFNRKLWSILLSAVT 66 Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNS-YQDIIDVISIVRDGL 113 S+++ E++ N+ +IG +V+ + ++ + +I++ + GL Sbjct: 67 SDESPQSIEIRQNIANIGTFVMTQTAEMQIAPKPELLKPLIEINCNLAAGL 117 >gi|91976151|ref|YP_568810.1| flagellar biosynthesis regulatory protein FlaF [Rhodopseudomonas palustris BisB5] gi|91682607|gb|ABE38909.1| flagellar FlaF [Rhodopseudomonas palustris BisB5] Length = 122 Score = 75.0 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 51/113 (45%), Gaps = 2/113 (1%) Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSK-QAVEALFYTSRVWVVFIQD 61 Q Y T Q ++ +L + L I EAL + ++W +F+ D Sbjct: 6 QAYARTAQRTASPREIEAQALLKAARQLQDIVTNWSERGAIGLNEALMFNRKLWSIFVSD 65 Query: 62 LVSEDNHLPQEVKLNLISIGLWVLKECERIR-RNKSNSYQDIIDVISIVRDGL 113 + +DN E++ N+ +IG++VL + ++ + + + +I++ + GL Sbjct: 66 AMRDDNPQSIEIRQNIANIGVFVLSQSAALQMKAEVEPLKALIEINRNIAAGL 118 >gi|114570513|ref|YP_757193.1| flagellar biosynthesis regulatory protein FlaF [Maricaulis maris MCS10] gi|114340975|gb|ABI66255.1| flagellar FlaF family protein [Maricaulis maris MCS10] Length = 126 Score = 75.0 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 6/113 (5%) Query: 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNS-KQAVEALFYTSRVWVVFIQ 60 Q ++ R E+ + + L A S + +A+ + RVW Sbjct: 6 YQKSAARAED----PRATEYRLFAQVTRSLMNAKSLPIESLQDRAQAIDWNRRVWSNLAL 61 Query: 61 DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 D S+DN LP+ ++ +IS+ ++V K+ RN + D++D+ V GL Sbjct: 62 DCASQDNKLPEALRAAIISLSIFVSKQGSHAMRNP-EAIDDLVDINRTVMQGL 113 >gi|83944194|ref|ZP_00956650.1| flaF protein [Sulfitobacter sp. EE-36] gi|83845061|gb|EAP82942.1| flaF protein [Sulfitobacter sp. EE-36] Length = 133 Score = 74.6 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 13/121 (10%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAV-----------EALFYTS 52 Y TI + + R+ E IL S L ++ + + + L+ Sbjct: 5 AYKRTISHT-EDPRQIERRILASVTSKLENKFEAFDGAAEKSQKLQMLADGLRDTLWENQ 63 Query: 53 RVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDG 112 RVW+ F DL +DN L +++ LIS+ LWV + + S + + +ID+ + DG Sbjct: 64 RVWLTFKADLAEKDNGLTADLRAALISLALWVENHTKAVLSG-SKNVKPLIDINRSIIDG 122 Query: 113 L 113 L Sbjct: 123 L 123 >gi|288962698|ref|YP_003452992.1| FliL protein [Azospirillum sp. B510] gi|288914964|dbj|BAI76448.1| FliL protein [Azospirillum sp. B510] Length = 132 Score = 74.6 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 50/111 (45%), Gaps = 2/111 (1%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63 YH+TI E + RK E+ + R L + S +AL+ +W DL+ Sbjct: 5 AYHQTIAE-CDDPRKIEYRVFLRITLALEQNRDADWRSAALKDALWRNLELWNALRADLL 63 Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 + N LP+ ++ L+S+ V + +R+ R + ++ + V GL+ Sbjct: 64 EDGNALPEALRAGLVSLSFAVNRNTQRVLRGEG-GIDLLLHINRSVMQGLQ 113 >gi|148256807|ref|YP_001241392.1| flagellar biosynthesis regulatory protein FlaF [Bradyrhizobium sp. BTAi1] gi|146408980|gb|ABQ37486.1| hypothetical protein BBta_5526 [Bradyrhizobium sp. BTAi1] Length = 96 Score = 74.2 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 44/91 (48%), Gaps = 1/91 (1%) Query: 24 LDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLW 83 L + L + + +AL + R+W +F+ + DN E++ N+ +IG++ Sbjct: 2 LKAARQLQDVQANWNGPDRNMYKALLFNRRLWTIFMSAVEMNDNPNSIEIRQNIANIGVF 61 Query: 84 VLKECERIRRNKSNS-YQDIIDVISIVRDGL 113 V+K+ ++ + + + +ID+ + GL Sbjct: 62 VMKQTIEMQMDPDPAKLKSLIDINCHIAAGL 92 >gi|328543142|ref|YP_004303251.1| flagellar protein FlaF [polymorphum gilvum SL003B-26A1] gi|326412888|gb|ADZ69951.1| Flagellar protein FlaF [Polymorphum gilvum SL003B-26A1] Length = 97 Score = 74.2 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 1/86 (1%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECE 89 L + + +AL Y ++W V + ++HLPQ++K NL S+G++V K Sbjct: 8 QLIKDEWDGSSFAEKDDALAYNRKLWTVLVTSATGAESHLPQDLKNNLASLGVFVFKHTI 67 Query: 90 RIRRNKS-NSYQDIIDVISIVRDGLK 114 + + + +I + + +GL+ Sbjct: 68 NVLIDPAPEKLDTLIFINRSIAEGLR 93 >gi|39936974|ref|NP_949250.1| flagellar biosynthesis regulatory protein FlaF [Rhodopseudomonas palustris CGA009] gi|192292802|ref|YP_001993407.1| flagellar biosynthesis regulatory protein FlaF [Rhodopseudomonas palustris TIE-1] gi|39650831|emb|CAE29354.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009] gi|192286551|gb|ACF02932.1| flagellar FlaF family protein [Rhodopseudomonas palustris TIE-1] Length = 122 Score = 74.2 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 52/113 (46%), Gaps = 2/113 (1%) Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAV-EALFYTSRVWVVFIQD 61 Q Y T Q ++ +L + L + + EAL + ++W +F+ + Sbjct: 6 QAYARTAQRTASPREIEAQALLKAAKQLQDVVTNWEEKGAIGLQEALLFNRKLWSIFVTE 65 Query: 62 LVSEDNHLPQEVKLNLISIGLWVLKECERIR-RNKSNSYQDIIDVISIVRDGL 113 + +DN E++ N+ +IG++V+ + ++ + + Q +ID+ + GL Sbjct: 66 AMRDDNPQSIEIRQNIANIGVFVMSQSSALQIKPEVERLQALIDINRNIAAGL 118 >gi|83594188|ref|YP_427940.1| putative flagellar protein FlaF [Rhodospirillum rubrum ATCC 11170] gi|83577102|gb|ABC23653.1| putative flagellar protein FlaF [Rhodospirillum rubrum ATCC 11170] Length = 104 Score = 73.8 bits (180), Expect = 7e-12, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 42/93 (45%), Gaps = 1/93 (1%) Query: 23 ILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGL 82 ++ +L A + +AL + +W + D+ N LP E+K N++S+ L Sbjct: 2 AFTKAAVMLEEARTKPNDKTAFSQALRFNHLLWTIIQADITEPANTLPPELKANIMSLSL 61 Query: 83 WVLKECER-IRRNKSNSYQDIIDVISIVRDGLK 114 +V ++ +R + + +I + + GL+ Sbjct: 62 FVDRQTTASLRSGEVGELEILISINRNLAAGLR 94 >gi|163744337|ref|ZP_02151697.1| flaF protein [Oceanibulbus indolifex HEL-45] gi|161381155|gb|EDQ05564.1| flaF protein [Oceanibulbus indolifex HEL-45] Length = 134 Score = 73.4 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 48/121 (39%), Gaps = 13/121 (10%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVE-----------ALFYTS 52 Y TI+ES R+ E IL R L+ + ++ E AL+ Sbjct: 5 AYKRTIRESETP-RQIERRILSRVTHDLAEKGQGFDATEDKSERLNILSTGLRDALYENQ 63 Query: 53 RVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDG 112 R W DL N +P +K +LISI LWV + + + ++++ + G Sbjct: 64 RFWSALRYDLAEPGNTMPDALKASLISIALWVERHSTALMAGEGR-LAGLVEINGNIAAG 122 Query: 113 L 113 L Sbjct: 123 L 123 >gi|254509559|ref|ZP_05121626.1| flagellar FlaF family protein [Rhodobacteraceae bacterium KLH11] gi|221533270|gb|EEE36258.1| flagellar FlaF family protein [Rhodobacteraceae bacterium KLH11] Length = 124 Score = 73.4 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 40/100 (40%), Gaps = 2/100 (2%) Query: 16 CRKREHWILDRSISLLSIAHK-SLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVK 74 R E+ + + L A + V+AL R+W V + +N LP ++ Sbjct: 21 PRDTEYEAISKITHRLKAAAARKGTDFGGFVQALHENRRLWNVLATGVADTENALPSALR 80 Query: 75 LNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 + + + ++ NK+ + ++++ V GL+ Sbjct: 81 ARIFYLAEFTEHHSSQVLGNKA-GVEPLLEINMAVLRGLR 119 >gi|83955106|ref|ZP_00963762.1| flaF protein [Sulfitobacter sp. NAS-14.1] gi|83840435|gb|EAP79608.1| flaF protein [Sulfitobacter sp. NAS-14.1] Length = 133 Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 13/121 (10%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAV-----------EALFYTS 52 Y TI + + R+ E IL S L ++ + + + L+ Sbjct: 5 AYKRTISHT-EDPRQIERRILASVTSKLENKFEAFDGAAEKSQKLQMLADGLRDTLWENQ 63 Query: 53 RVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDG 112 RVW+ F DL +DN L +++ LIS+ LWV + + S + + +ID+ + +G Sbjct: 64 RVWLTFKADLAEKDNGLTADLRAALISLALWVENHTKAVLSG-SKNVKPLIDINRSIING 122 Query: 113 L 113 L Sbjct: 123 L 123 >gi|126464888|ref|YP_001041864.1| flagellar biosynthesis regulatory protein FlaF [Rhodobacter sphaeroides ATCC 17029] gi|126106703|gb|ABN79228.1| flagellar FlaF family protein [Rhodobacter sphaeroides ATCC 17029] Length = 121 Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 49/113 (43%), Gaps = 2/113 (1%) Query: 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLP-NSKQAVEALFYTSRVWVVFIQ 60 R Y Q S+ R E+ +L + +LL + +A+ ++W+ F Sbjct: 3 RTAYSAASQGSARTPRSTEYALLAKVTALLKETDRHDALAFPALAQAIEQNRKLWLRFAL 62 Query: 61 DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 D+ DN LP++++ + + V + R+ +++ ++D+ V GL Sbjct: 63 DVAHPDNELPRDLRARIFYLYEIVQQHSARVLAHRA-DTGLLVDINRAVMRGL 114 >gi|316932810|ref|YP_004107792.1| flagellar FlaF family protein [Rhodopseudomonas palustris DX-1] gi|315600524|gb|ADU43059.1| flagellar FlaF family protein [Rhodopseudomonas palustris DX-1] Length = 122 Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 52/113 (46%), Gaps = 2/113 (1%) Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAV-EALFYTSRVWVVFIQD 61 Q Y T Q ++ +L + L + + EAL + ++W +F+ + Sbjct: 6 QAYARTAQRTASPREIEAQALLKAAKQLQDVVTNWDEKGAIGLQEALMFNRKLWSIFVSE 65 Query: 62 LVSEDNHLPQEVKLNLISIGLWVLKECERIR-RNKSNSYQDIIDVISIVRDGL 113 + +DN E++ N+ +IG++VL + ++ + + Q +ID+ + GL Sbjct: 66 AMRDDNPQSIEIRQNIANIGVFVLSQSSALQIKPEVERLQALIDINRNIAAGL 118 >gi|221634510|ref|YP_002523198.1| FlaF protein [Rhodobacter sphaeroides KD131] gi|221163383|gb|ACM04345.1| FlaF protein [Rhodobacter sphaeroides KD131] Length = 126 Score = 72.3 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 49/113 (43%), Gaps = 2/113 (1%) Query: 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLP-NSKQAVEALFYTSRVWVVFIQ 60 R Y Q S+ R E+ +L + +LL + +A+ ++W+ F Sbjct: 8 RTAYSAARQGSARTPRSTEYALLAKVTALLKETDRHDALAFPALAQAIEQNRKLWLRFAL 67 Query: 61 DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 D+ DN LP++++ + + V + R+ +++ ++D+ V GL Sbjct: 68 DVAHPDNELPRDLRARIFYLYEIVQQHSARVLAHRA-DTGLLVDINRAVMRGL 119 >gi|84502365|ref|ZP_01000501.1| hypothetical protein OB2597_20156 [Oceanicola batsensis HTCC2597] gi|84389177|gb|EAQ01974.1| hypothetical protein OB2597_20156 [Oceanicola batsensis HTCC2597] Length = 132 Score = 72.3 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 45/121 (37%), Gaps = 13/121 (10%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLS-----------IAHKSLPNSKQAVEALFYTS 52 Y TI+ES R+ E + R L A ++ + L Sbjct: 5 AYKRTIRES-ESPRQIERRVFLRVTGELEKKSTPFDKAASRADRADLLAGGLRSHLAENL 63 Query: 53 RVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDG 112 ++W DL +N LP ++K LIS+ L+V ++ S ++ + + G Sbjct: 64 KLWSTIKHDLSQPENGLPVQLKAGLISLALFVERQTANCL-GGSAGLGVLVQINQNLISG 122 Query: 113 L 113 L Sbjct: 123 L 123 >gi|125654645|ref|YP_001033839.1| flagellar biosynthesis regulatory protein FlaF [Rhodobacter sphaeroides 2.4.1] gi|332561332|ref|ZP_08415647.1| flagellar biosynthesis regulatory protein FlaF [Rhodobacter sphaeroides WS8N] gi|77386305|gb|ABA81734.1| possible FlaF protein [Rhodobacter sphaeroides 2.4.1] gi|332274131|gb|EGJ19448.1| flagellar biosynthesis regulatory protein FlaF [Rhodobacter sphaeroides WS8N] Length = 121 Score = 72.3 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 49/113 (43%), Gaps = 2/113 (1%) Query: 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLP-NSKQAVEALFYTSRVWVVFIQ 60 R Y Q S+ R E+ +L + +LL + +A+ ++W+ F Sbjct: 3 RTAYSAARQGSARTPRSTEYALLAKVTALLKETDRHDALAFPALAQAIEQNRKLWLRFAL 62 Query: 61 DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 D+ DN LP++++ + + V + R+ +++ ++D+ V GL Sbjct: 63 DVAHPDNELPRDLRARIFYLYEIVQQHSARVLAHRA-DTGLLVDINRAVMRGL 114 >gi|253702413|ref|YP_003023602.1| flagellar biosynthesis regulatory protein FlaF [Geobacter sp. M21] gi|251777263|gb|ACT19844.1| flagellar FlaF family protein [Geobacter sp. M21] Length = 129 Score = 70.7 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 54/110 (49%), Gaps = 4/110 (3%) Query: 9 IQESSIECRKREHWILDRSISLLSI-AHKSLPNSKQA--VEALFYTSRVWVVFIQDLVSE 65 IQ+ S+ R+ E +L ++ +L ++A +EA+ Y +VW F +L Sbjct: 13 IQKESMSGRELEASVLTKAGLMLKAVQDNWDAPDREAKMLEAIKYNQKVWSFFQAELSEP 72 Query: 66 DNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDI-IDVISIVRDGLK 114 + +P++++ +L+++ L+V K + S I ID+ + GL+ Sbjct: 73 GHPMPKKLREDLLNLSLFVDKRFFEVMAFPSPEKLGIVIDINFNIAAGLR 122 >gi|89068720|ref|ZP_01156106.1| hypothetical protein OG2516_06766 [Oceanicola granulosus HTCC2516] gi|89045683|gb|EAR51745.1| hypothetical protein OG2516_06766 [Oceanicola granulosus HTCC2516] Length = 132 Score = 70.3 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 53/121 (43%), Gaps = 13/121 (10%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKS---LPNSKQAV--------EALFYTS 52 Y TI+ES R+ E +L + + L A ++ + + + +AL Sbjct: 5 AYKRTIRESETP-RQIERRVLAQLTARLEDAAQAYDTAATAPERIAILAGGLRDALAENV 63 Query: 53 RVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDG 112 VW+ F DL S N LP +++ LIS+ LW+ K+ RI + V V DG Sbjct: 64 TVWLHFRYDLSSPANELPPALRVQLISLSLWIEKQTNRIL-GGGQGLVQLAAVNRSVVDG 122 Query: 113 L 113 L Sbjct: 123 L 123 >gi|154252991|ref|YP_001413815.1| flagellar FlaF family protein [Parvibaculum lavamentivorans DS-1] gi|154156941|gb|ABS64158.1| flagellar FlaF family protein [Parvibaculum lavamentivorans DS-1] Length = 125 Score = 69.6 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 52/115 (45%), Gaps = 5/115 (4%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPN--SKQAVEALFYTSRVWVVFIQD 61 Y + ++ + R+ E IL R+ L + N + +AL Y R+W VF Sbjct: 7 AYANASRMATKDPREFEATILTRAAGQLQRIRDNWTNETASALRDALLYNRRIWTVFAAS 66 Query: 62 LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNS---YQDIIDVISIVRDGL 113 +++ LP+E+K N+ ++ +++ K I ++ + +I + + GL Sbjct: 67 AAEKEHPLPREIKQNIANLAIFIFKRTSEIESSREPAPQLLDTLIMINREIAAGL 121 >gi|118588728|ref|ZP_01546136.1| putative flagellar protein FlaF [Stappia aggregata IAM 12614] gi|118438714|gb|EAV45347.1| putative flagellar protein FlaF [Stappia aggregata IAM 12614] Length = 94 Score = 69.2 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 42/86 (48%), Gaps = 1/86 (1%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECE 89 L + + + +AL Y ++W + + S ++ LPQ++K N+ ++G++V K+ Sbjct: 8 QLIKDEWANSSLAEKDDALVYNRKLWTILVTSATSAESELPQDIKNNIATLGVFVFKQTM 67 Query: 90 RIRRNKSNS-YQDIIDVISIVRDGLK 114 + + +I + + +GL+ Sbjct: 68 TVMTTDDENKLDTLISINRSIAEGLR 93 >gi|189426400|ref|YP_001953577.1| flagellar biosynthesis regulatory protein FlaF [Geobacter lovleyi SZ] gi|189422659|gb|ACD97057.1| flagellar FlaF family protein [Geobacter lovleyi SZ] Length = 125 Score = 68.8 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 54/113 (47%), Gaps = 4/113 (3%) Query: 6 HETIQESSIECRKREHWILDRSISLL-SIAHKSLPNSKQ--AVEALFYTSRVWVVFIQDL 62 + ++Q+ ++ R+ E +L R+ +L + + +EA+ + +VW F +L Sbjct: 9 YTSMQKETLSGRELEASVLTRAGLMLKQVQENWAAPDRDEKLLEAIKFNQKVWSFFQAEL 68 Query: 63 VSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNS-YQDIIDVISIVRDGLK 114 +N LP +K +++++ L++ K + + ++D+ + GL+ Sbjct: 69 SDPENPLPTALKQDILNLSLFIDKRLFEVMADPDKDKLTIVVDIDFNIAAGLR 121 >gi|197120104|ref|YP_002140531.1| flagellar biosynthesis regulatory protein FlaF [Geobacter bemidjiensis Bem] gi|197089464|gb|ACH40735.1| flagellar biogenesis regulator FlaF [Geobacter bemidjiensis Bem] Length = 129 Score = 68.8 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 54/110 (49%), Gaps = 4/110 (3%) Query: 9 IQESSIECRKREHWILDRSISLLSI-AHKSLPNSKQA--VEALFYTSRVWVVFIQDLVSE 65 IQ+ S+ R+ E +L ++ +L ++A +EA+ Y +VW F +L Sbjct: 13 IQKESMSGRELEASVLTKAGLMLKAVQDNWDAPDREAKMLEAIKYNQKVWSFFQAELSEP 72 Query: 66 DNHLPQEVKLNLISIGLWVLKECERIRRNKS-NSYQDIIDVISIVRDGLK 114 + +P++++ +L+++ L+V K + S ++D+ + GL+ Sbjct: 73 GHPMPKKLREDLLNLSLFVDKRFFEVMAFPSAEKLGIVVDINFNIAAGLR 122 >gi|322421644|ref|YP_004200867.1| flagellar FlaF family protein [Geobacter sp. M18] gi|320128031|gb|ADW15591.1| flagellar FlaF family protein [Geobacter sp. M18] Length = 131 Score = 68.4 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 54/110 (49%), Gaps = 4/110 (3%) Query: 9 IQESSIECRKREHWILDRSISLLSIAHK-SLPNSKQA--VEALFYTSRVWVVFIQDLVSE 65 IQ+ S+ R+ E +L ++ +L + ++ ++A+ Y +VW F +L Sbjct: 13 IQKESMSGRELEASVLTKAGLMLKAVQESWDAPDRETKMLDAIKYNQKVWSFFQAELTEP 72 Query: 66 DNHLPQEVKLNLISIGLWVLKECERIRRNKS-NSYQDIIDVISIVRDGLK 114 + +P++++ +L+++ L+V K + + +ID+ + GL+ Sbjct: 73 GHPMPKKLREDLLNLSLFVDKRFFEVMAFPTPEKLSIVIDINFNIAAGLR 122 >gi|159045900|ref|YP_001534694.1| flagellar biosynthesis regulatory protein FlaF [Dinoroseobacter shibae DFL 12] gi|157913660|gb|ABV95093.1| flagellar biosynthesis regulatory protein FlaF [Dinoroseobacter shibae DFL 12] Length = 123 Score = 68.4 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 40/94 (42%), Gaps = 2/94 (2%) Query: 20 EHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLIS 79 E+ + + S L + KS + +A+ R+W+ D+ + N+LP E++ + Sbjct: 25 EYELFAKMTSALVQSSKSG-KFEAIAKAVHDNRRLWLALAADVSDDANNLPVELRAQVFY 83 Query: 80 IGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 + + ++ K ++++ + GL Sbjct: 84 LAEFTQHHSSKVLTEKVP-VDPLVEINRSIMSGL 116 >gi|304321142|ref|YP_003854785.1| flagellar protein FlaF [Parvularcula bermudensis HTCC2503] gi|303300044|gb|ADM09643.1| flagellar protein FlaF, putative [Parvularcula bermudensis HTCC2503] Length = 127 Score = 67.6 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 55/111 (49%), Gaps = 3/111 (2%) Query: 5 YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNS-KQAVEALFYTSRVWVVFIQDLV 63 Y + ++S+ R+ E +L + + ++ A S P ++ V A+ +W I DL+ Sbjct: 9 YAQV-RKSTASGREVEIQLLTKIAAEMANADPSTPEGFRELVTAVHRNMEMWTALIVDLL 67 Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 E+N + Q +K+ L+ +G + L ++ ++ + +I + + GLK Sbjct: 68 QEENKIDQTLKVGLLKLGQFSLVHSRKVVCRQAE-PEVLISINRQIAAGLK 117 >gi|144897700|emb|CAM74564.1| Flagellar FlaF [Magnetospirillum gryphiswaldense MSR-1] Length = 145 Score = 67.3 bits (163), Expect = 6e-10, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 51/110 (46%), Gaps = 3/110 (2%) Query: 5 YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64 Y+ Q R+ E W L + +S+A K ++ + A+ R+W +F +L Sbjct: 11 YNSVPQ--PGNPRQTEAWALTEAARRMSLAQKEGVATEDLLVAVRLNWRLWTIFQAELSG 68 Query: 65 EDNHLPQEVKLNLISIGLWVLKECERIRRNK-SNSYQDIIDVISIVRDGL 113 E++ LP +++++++S+ ++ K I +I++ + GL Sbjct: 69 EESALPDQMRMDMLSLCNFIDKRSVDIIAEPLPEKLDVLININRQIAAGL 118 >gi|170751769|ref|YP_001758029.1| flagellar FlaF family protein [Methylobacterium radiotolerans JCM 2831] gi|170658291|gb|ACB27346.1| flagellar FlaF family protein [Methylobacterium radiotolerans JCM 2831] Length = 123 Score = 66.9 bits (162), Expect = 8e-10, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 53/114 (46%), Gaps = 4/114 (3%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQA--VEALFYTSRVWVVFIQD 61 Y +T S++ R+ E +L ++ L A + L + EAL + RVW + + Sbjct: 7 AYAKT-SHSALSPREAESAVLLKAAQKLIGASQGLASGDAGRINEALTFNQRVWTLLTSE 65 Query: 62 LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKS-NSYQDIIDVISIVRDGLK 114 S+ N LP +VK + +G++VL+ C + ++ + + + GL+ Sbjct: 66 ATSDVNPLPADVKQGVGRLGVFVLQSCIDTMIAPTPEKIATLVSINNHIAAGLQ 119 >gi|220921350|ref|YP_002496651.1| flagellar FlaF family protein [Methylobacterium nodulans ORS 2060] gi|219945956|gb|ACL56348.1| flagellar FlaF family protein [Methylobacterium nodulans ORS 2060] Length = 121 Score = 66.9 bits (162), Expect = 9e-10, Method: Composition-based stats. Identities = 18/113 (15%), Positives = 40/113 (35%), Gaps = 1/113 (0%) Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDL 62 Y + Q + ++ + L ++ EAL + +VW + Sbjct: 6 HAYAKVSQVALTPREAEAAVLIKAAARLQAVQDNWAEQQAGLNEALTFNQKVWTLLSTAA 65 Query: 63 VSEDNHLPQEVKLNLISIGLWVLKEC-ERIRRNKSNSYQDIIDVISIVRDGLK 114 D LP E+K ++ +G +V + + + +I + + GL+ Sbjct: 66 TEPDAPLPPELKQSMARLGAFVFTRTFDAMVEPAAEKLTALIRINREIASGLR 118 >gi|118581735|ref|YP_902985.1| flagellar biosynthesis regulatory protein FlaF [Pelobacter propionicus DSM 2379] gi|118504445|gb|ABL00928.1| flagellar FlaF family protein [Pelobacter propionicus DSM 2379] Length = 127 Score = 65.7 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 51/106 (48%), Gaps = 5/106 (4%) Query: 14 IECRKREHWILDRS-ISLLSIAHKSLPNSKQAV--EALFYTSRVWVVFIQDLVSEDNHLP 70 + R+ E +L ++ + L K + A+ EA+ Y +VW F +L DN LP Sbjct: 16 MSPRELEASVLTKAGLKLKQCQEKWNTPERNALLDEAIRYNQKVWSFFQSELSMPDNPLP 75 Query: 71 QEVKLNLISIGLWVLKECERIRRNKS--NSYQDIIDVISIVRDGLK 114 Q+++ +++++ L++ K + + +ID+ + GL+ Sbjct: 76 QKLREDILNLSLFIDKRLFEVLAFPNAPERLTIVIDINFNIAAGLR 121 >gi|170739223|ref|YP_001767878.1| flagellar FlaF family protein [Methylobacterium sp. 4-46] gi|168193497|gb|ACA15444.1| flagellar FlaF family protein [Methylobacterium sp. 4-46] Length = 121 Score = 63.4 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 45/113 (39%), Gaps = 3/113 (2%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLSI-AHKSLPNSKQAVEALFYTSRVWVVFIQDL 62 Y + Q +++ R+ E +L ++ + L EAL + +VW + Sbjct: 7 AYAKVAQ-AALTPREAEAAVLIKAAARLQAIQDNWTDQQAGLNEALTFNQKVWTLLSTAA 65 Query: 63 VSEDNHLPQEVKLNLISIGLWVLKEC-ERIRRNKSNSYQDIIDVISIVRDGLK 114 D LP ++K ++ +G +V + + + +I + + GL+ Sbjct: 66 TEPDAPLPADLKQSMAQLGAFVFTRTFDAMIEPHAEKLTALIRINRELASGLR 118 >gi|126730143|ref|ZP_01745955.1| flagellar protein FlaF, putative [Sagittula stellata E-37] gi|126709523|gb|EBA08577.1| flagellar protein FlaF, putative [Sagittula stellata E-37] Length = 81 Score = 63.4 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 1/72 (1%) Query: 42 KQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQD 101 + VEAL R+W D+ E N LPQ+++ + + +V ++ ++ K Sbjct: 4 PKLVEALSDNQRLWTTLAIDVADEGNALPQDLRARIFYLAEFVQQQTSKVLTRKGR-ITP 62 Query: 102 IIDVISIVRDGL 113 ++++ + + GL Sbjct: 63 LLEINAAILKGL 74 >gi|296533830|ref|ZP_06896366.1| conserved hypothetical protein [Roseomonas cervicalis ATCC 49957] gi|296265848|gb|EFH11937.1| conserved hypothetical protein [Roseomonas cervicalis ATCC 49957] Length = 123 Score = 63.4 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 41/98 (41%), Gaps = 6/98 (6%) Query: 16 CRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKL 75 R+ E + + L A ++ ++ EAL R+W + L + +N LP ++ Sbjct: 28 PREEEAAAFRSAATTLLAAREAGHEARG--EALRLNRRLWQAVLIALAAPENALPMPLRQ 85 Query: 76 NLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 L ++ +L+E +R R + + + GL Sbjct: 86 GLATLATTMLREMDRNR----PDLAFLAAINQEIAAGL 119 >gi|260432288|ref|ZP_05786259.1| flagellar biosynthesis regulatory protein FlaF [Silicibacter lacuscaerulensis ITI-1157] gi|260416116|gb|EEX09375.1| flagellar biosynthesis regulatory protein FlaF [Silicibacter lacuscaerulensis ITI-1157] Length = 124 Score = 63.0 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 19/114 (16%), Positives = 47/114 (41%), Gaps = 3/114 (2%) Query: 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQA-VEALFYTSRVWVVFIQ 60 ++ Y ++ + R E+ + + L A + V+AL R+W V Sbjct: 8 QRAYAQSAAPTRTP-RDTEYEAISKITHRLKAAAARKASDYSGFVQALHDNRRLWSVLAN 66 Query: 61 DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 + DN LP +++ + + + + ++ K+ + ++++ V GL+ Sbjct: 67 GVADSDNALPNDLRARIFYLSEFTEQHTGQVLAKKA-DVEPLLEINLAVLRGLR 119 >gi|260574410|ref|ZP_05842414.1| flagellar FlaF family protein [Rhodobacter sp. SW2] gi|259023306|gb|EEW26598.1| flagellar FlaF family protein [Rhodobacter sp. SW2] Length = 126 Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 45/101 (44%), Gaps = 6/101 (5%) Query: 17 RKREHWILDRSISLLSIA---HKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEV 73 R E+ +L R+ L + K + AL R+W D+ +N LP + Sbjct: 23 RGIEYDLLARTTHQLKESWTRRKEDFSGFAT--ALNDNLRLWSALAADVAEPENGLPAPL 80 Query: 74 KLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 + L + + + + R++++ S + ++D+ + V GL+ Sbjct: 81 RAQLFYLYEFTAEHSRKARQDQA-SVEVLVDINTAVMRGLR 120 >gi|126734098|ref|ZP_01749845.1| flagellar protein FlaF, putative [Roseobacter sp. CCS2] gi|126716964|gb|EBA13828.1| flagellar protein FlaF, putative [Roseobacter sp. CCS2] Length = 74 Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 1/69 (1%) Query: 45 VEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIID 104 + A+ R+W D+ + N LP+E++ + + + +++ R K+ +ID Sbjct: 1 MAAIHDNRRMWTTMAVDVADKGNALPKELRAQIFYLAEFTDHHSQQVIRGKA-DPAALID 59 Query: 105 VISIVRDGL 113 + V GL Sbjct: 60 INMAVLKGL 68 >gi|188580879|ref|YP_001924324.1| flagellar FlaF family protein [Methylobacterium populi BJ001] gi|179344377|gb|ACB79789.1| flagellar FlaF family protein [Methylobacterium populi BJ001] Length = 124 Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 43/112 (38%), Gaps = 2/112 (1%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63 Y + + ++ R+ E +L ++ L + EAL + RVW + Sbjct: 7 AYAKVAR-VALSPREAEAAVLLKAAGRLQALGAGVEAGPALNEALGFNQRVWTILASAAT 65 Query: 64 SEDNHLPQEVKLNLISIGLWVLKEC-ERIRRNKSNSYQDIIDVISIVRDGLK 114 N LP +V+ + + +V + + + ++ + + + GL+ Sbjct: 66 DPANPLPVDVRHGMAQLSAYVFHTIMDTMIEPTREKIESLVSLNNHIAAGLQ 117 >gi|254488350|ref|ZP_05101555.1| flagellar protein, putative [Roseobacter sp. GAI101] gi|214045219|gb|EEB85857.1| flagellar protein, putative [Roseobacter sp. GAI101] Length = 88 Score = 61.9 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 1/70 (1%) Query: 45 VEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIID 104 +EAL ++W ++ DN LP+E++ L + + + RNK ++ +++ Sbjct: 14 LEALHENRKLWRTLALNVSQSDNGLPEELRARLYYLSEFTNHHTSEVIRNKISAI-PLVE 72 Query: 105 VISIVRDGLK 114 V + + GLK Sbjct: 73 VNTAILRGLK 82 >gi|23005490|ref|ZP_00048277.1| hypothetical protein Magn03001225 [Magnetospirillum magnetotacticum MS-1] Length = 64 Score = 58.4 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 1/60 (1%) Query: 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSL-PNSKQAVEALFYTSRVWVVFIQ 60 R Y E ++++ R RE DR++ LL A + A+ Y +W + I Sbjct: 3 RMSYSEIMEDAPDLGRAREREAFDRALGLLQSAEARGVTAGHERTAAISYIQDLWNLLIA 62 >gi|163851039|ref|YP_001639082.1| flagellar FlaF family protein [Methylobacterium extorquens PA1] gi|218529868|ref|YP_002420684.1| flagellar FlaF family protein [Methylobacterium chloromethanicum CM4] gi|240138172|ref|YP_002962644.1| putative flagellar protein FlaF [Methylobacterium extorquens AM1] gi|254560732|ref|YP_003067827.1| flagellar protein FlaF [Methylobacterium extorquens DM4] gi|163662644|gb|ABY30011.1| flagellar FlaF family protein [Methylobacterium extorquens PA1] gi|218522171|gb|ACK82756.1| flagellar FlaF family protein [Methylobacterium chloromethanicum CM4] gi|240008141|gb|ACS39367.1| putative flagellar protein FlaF [Methylobacterium extorquens AM1] gi|254268010|emb|CAX23878.1| putative flagellar protein FlaF [Methylobacterium extorquens DM4] Length = 124 Score = 55.7 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 16/101 (15%), Positives = 40/101 (39%), Gaps = 1/101 (0%) Query: 15 ECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVK 74 R+ E +L ++ L + +AL + RVW + + LP EV+ Sbjct: 17 SPREAEAAVLLKAAGRLQSLGSQVEAGPALNDALTFNQRVWTILASAATEPSSPLPVEVR 76 Query: 75 LNLISIGLWVLKEC-ERIRRNKSNSYQDIIDVISIVRDGLK 114 ++ + +V + + + + ++ + + + GL+ Sbjct: 77 TSMAQLSAYVFHTILDTMIEPTAQKIESLVSLNNHIAAGLQ 117 >gi|254469993|ref|ZP_05083397.1| flagellar FlaF [Pseudovibrio sp. JE062] gi|211960304|gb|EEA95500.1| flagellar FlaF [Pseudovibrio sp. JE062] Length = 99 Score = 55.3 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 14/93 (15%), Positives = 43/93 (46%), Gaps = 2/93 (2%) Query: 24 LDRSISLLSIAHKSLPNSKQ-AVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGL 82 + + L + + S++ E L + +W +F+ + + + LP E++ N+ ++ L Sbjct: 1 MKAAARLSVLQREWDTVSREERNETLIFNRTLWTIFVTEATASHSELPLELQNNIANLAL 60 Query: 83 WVLKECERIRRNKS-NSYQDIIDVISIVRDGLK 114 ++ + + + + +I++ + GL+ Sbjct: 61 FMFNRTIEMMGGEEPEALETMININKSLAAGLR 93 >gi|144897636|emb|CAM74500.1| Flagellar FlaF [Magnetospirillum gryphiswaldense MSR-1] Length = 122 Score = 55.3 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 48/107 (44%), Gaps = 4/107 (3%) Query: 9 IQESSIECRKREHWILDRSISLLSIA-HKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDN 67 Q S + R+ + ++ +LL + ++A AL R+W + L D+ Sbjct: 16 AQGSVLPLRQADALAFTQAANLLEDCLRSADRTQREA--ALKRNQRLWTQVQRLLSRSDH 73 Query: 68 HLPQEVKLNLISIGLWVLKEC-ERIRRNKSNSYQDIIDVISIVRDGL 113 LP +V+ NL+ + ++ ++ + + ++ + ++ + V GL Sbjct: 74 PLPADVRANLLDLSHFIDRQTVKALISGAADDLRPLVKINREVAAGL 120 >gi|167043519|gb|ABZ08215.1| putative flagellar protein FlaF [uncultured marine microorganism HF4000_APKG2J17] Length = 125 Score = 55.3 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 43/100 (43%), Gaps = 1/100 (1%) Query: 15 ECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVK 74 R E ++ LL+ A + AL + + + DL + +HLP ++ Sbjct: 18 PPRAAEAEAFIKAARLLNQASAGPFDYDAYASALRFNQTLRTIIQADLGRDGSHLPAGLR 77 Query: 75 LNLISIGLWVLKECERIRRNKSNSYQD-IIDVISIVRDGL 113 +++++ L+V K+ + + Y ++++ + GL Sbjct: 78 SDILNLSLYVDKQTLKALSDPKAEYLGELMEIDRAIARGL 117 >gi|288962053|ref|YP_003452363.1| hypothetical protein AZL_c05260 [Azospirillum sp. B510] gi|288914333|dbj|BAI75819.1| hypothetical protein AZL_c05260 [Azospirillum sp. B510] Length = 181 Score = 54.9 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 2/103 (1%) Query: 12 SSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQ 71 +S R E W L + IA + K EAL R+W +F + ED P Sbjct: 20 TSDNPRDVEAWALAEAARR-IIAASHAKDEKAFREALQLNQRLWTIFQAAITEEDCGHPP 78 Query: 72 EVKLNLISIGLWVLKE-CERIRRNKSNSYQDIIDVISIVRDGL 113 EV+ N+ ++ L V +E R+ ++++ V GL Sbjct: 79 EVRTNIAALSLLVDRETTNRLVDLDFGKIDTLVNINRNVASGL 121 >gi|46200759|ref|ZP_00056440.2| hypothetical protein Magn03011141 [Magnetospirillum magnetotacticum MS-1] Length = 124 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 44/110 (40%), Gaps = 3/110 (2%) Query: 6 HETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSE 65 E SS+ ++E L + L A S + + V AL + VWV S Sbjct: 3 EEIGDLSSLPLPEQEALSLAEAAIALDRARSSKDRAAELVAALNHNLEVWVAIRSLARSP 62 Query: 66 DNHLPQEVKLNLISIGLWVLKE--CERIRRNKSNSYQDIIDVISIVRDGL 113 + LP ++K NLI + +V S S +I++ + +GL Sbjct: 63 GSPLPPDLKANLIRLSEFVAHTTFTNGATIGDS-SLNTLININMQLAEGL 111 >gi|83309788|ref|YP_420052.1| hypothetical protein amb0689 [Magnetospirillum magneticum AMB-1] gi|82944629|dbj|BAE49493.1| hypothetical protein [Magnetospirillum magneticum AMB-1] Length = 124 Score = 48.4 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 43/109 (39%), Gaps = 1/109 (0%) Query: 6 HETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSE 65 E SS+ ++E L + L A + + V AL + VWV S Sbjct: 3 EEIGDLSSLPLPEQEALSLAEAAIALDRARSGENRAAELVAALNHNLEVWVAIRSLARSP 62 Query: 66 DNHLPQEVKLNLISIGLWVLKEC-ERIRRNKSNSYQDIIDVISIVRDGL 113 + LP ++K NLI + +V ++ +I++ + +GL Sbjct: 63 GSALPPDLKANLIRLSEFVAHTTFTNGASIGDSALNTLININMQLAEGL 111 >gi|46200761|ref|ZP_00056442.2| hypothetical protein Magn03011143 [Magnetospirillum magnetotacticum MS-1] Length = 161 Score = 48.4 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 42/102 (41%), Gaps = 4/102 (3%) Query: 15 ECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDL-VSEDNHLPQEV 73 R+ E W L + ++ A + P +AL ++W +F DL + E Sbjct: 18 NPRETEAWALTEAARRMASASRGEPEG--MRDALRLNWKLWTIFQADLIGKVEAGETTET 75 Query: 74 KLNLISIGLWV-LKECERIRRNKSNSYQDIIDVISIVRDGLK 114 +N++S+ +V + + + ++++ + GL+ Sbjct: 76 VVNMLSLCQFVDFHTVAALTEPDAPKLEVLVNINRNIASGLR 117 >gi|83309790|ref|YP_420054.1| hypothetical protein amb0691 [Magnetospirillum magneticum AMB-1] gi|82944631|dbj|BAE49495.1| hypothetical protein [Magnetospirillum magneticum AMB-1] Length = 165 Score = 47.2 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 42/102 (41%), Gaps = 4/102 (3%) Query: 15 ECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDL-VSEDNHLPQEV 73 R+ E W L + ++ A + P E+L ++W +F DL + E Sbjct: 22 NPRETEAWALTEAARRMASASRGEPEG--MRESLRLNWKLWTIFQADLIGKAEAGEATET 79 Query: 74 KLNLISIGLWV-LKECERIRRNKSNSYQDIIDVISIVRDGLK 114 +N++S+ +V + + + ++++ + GL+ Sbjct: 80 VVNMLSLCQFVDFHTVAALTEPDAAKLEVLVNINRNIASGLR 121 >gi|58039254|ref|YP_191218.1| flagellin assembly protein [Gluconobacter oxydans 621H] gi|58001668|gb|AAW60562.1| Flagellin assembly protein [Gluconobacter oxydans 621H] Length = 140 Score = 44.9 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 5/99 (5%) Query: 15 ECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVK 74 R+ E +LL+ A V AL ++W + + D LP ++ Sbjct: 17 SSREVEVMAFRHVNALLTQASDHEAK----VAALAANLKLWSLLSLSVERVDCPLPPVLR 72 Query: 75 LNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 +LI +G W ++ Q +ID+ + + +GL Sbjct: 73 DDLIKVGSWAMRYSNSAFNAP-KDLQPLIDINNDMIEGL 110 >gi|239948270|ref|ZP_04700023.1| tetratricopeptide repeat-containing protein [Rickettsia endosymbiont of Ixodes scapularis] gi|239922546|gb|EER22570.1| tetratricopeptide repeat-containing protein [Rickettsia endosymbiont of Ixodes scapularis] Length = 689 Score = 41.1 bits (95), Expect = 0.047, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 6/91 (6%) Query: 3 QYYHETIQ--ESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQ 60 + Y++ +Q + +K +H + R + +S A L N+K EAL Y + +FI Sbjct: 515 EAYNQVMQLYDMHKPVKKEDHEVFGRIFTQMSRAQLGLGNAK---EALDYARKARTIFIN 571 Query: 61 DLVSEDNHLPQEVKLNLISIGLWVLKECERI 91 D +N V + I + + E + + Sbjct: 572 DPSRPNNSRDIAVSPD-IYLAKACVAEADAL 601 >gi|222428594|gb|ACM50205.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 850 Score = 41.1 bits (95), Expect = 0.049, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y W + + + QE+K + IS+ + V Sbjct: 769 LLIAARGLEHLGRRGWEALKYC---WNLLL--------YWSQELKSSAISLLNTTAIVVA 817 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI +++ I + +R GL+ Sbjct: 818 EGTDRILEGLQTAFRAFIHIPRRIRQGLE 846 >gi|89069827|ref|ZP_01157162.1| flagellar protein FlaF, putative [Oceanicola granulosus HTCC2516] gi|89044628|gb|EAR50744.1| flagellar protein FlaF, putative [Oceanicola granulosus HTCC2516] Length = 62 Score = 40.7 bits (94), Expect = 0.065, Method: Composition-based stats. Identities = 9/54 (16%), Positives = 25/54 (46%), Gaps = 1/54 (1%) Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 ++ +N L ++++ L + +V + + + + +I+V + V GL Sbjct: 3 AEVADRNNALSEDLRARLFYLSEFVGYQTRKALKGQG-GVASLIEVNTAVMRGL 55 >gi|295239063|gb|ADF84323.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 864 Score = 40.7 bits (94), Expect = 0.066, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y W + + QE+K + +S+ + V Sbjct: 783 LLIAARIVGLLGRRGWEALKY---WWNLL--------QYWSQELKNSAVSLXXXXAIAVA 831 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +R+ +Y+ I ++ +R GL+ Sbjct: 832 EGTDRVIEGLQRAYRGICNIPRRIRQGLE 860 >gi|225348169|gb|ACN87123.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 848 Score = 40.7 bits (94), Expect = 0.068, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A P ++ EAL Y +W + + QE++ + +++ + V Sbjct: 767 LLIAARIVEPLGRRGWEALKY---LWNLL--------QYWIQELRNSAVNLLNTTAIAVA 815 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI ++ II + +R GL+ Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGLE 844 >gi|7799886|emb|CAB91080.1| Env protein [Human immunodeficiency virus 1] Length = 847 Score = 40.7 bits (94), Expect = 0.078, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y +W + + QE+K IS+ + V Sbjct: 766 LLIAARSVDLLGRRGWEALKY---LWNLL--------QYWSQELKNRAISLLDATAIAVA 814 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI +++ I+++ +R GL+ Sbjct: 815 EGTDRIIEIIQRTFRAILNIPRRIRQGLE 843 >gi|91176537|gb|ABE26658.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 861 Score = 40.3 bits (93), Expect = 0.088, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 39/89 (43%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLIS----IGLWVL 85 LL + ++ EAL Y +W + + QE+K + +S I + V Sbjct: 780 LLIVTRLVELLGRRGWEALKY---LWNLL--------QYWSQELKNSAVSLLDAIAIAVA 828 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +R+ +++ I+++ +R GL+ Sbjct: 829 EGTDRVLEGLQRAFRAILNIPRRIRQGLE 857 >gi|83594178|ref|YP_427930.1| hypothetical protein Rru_A2846 [Rhodospirillum rubrum ATCC 11170] gi|83577092|gb|ABC23643.1| hypothetical protein Rru_A2846 [Rhodospirillum rubrum ATCC 11170] Length = 118 Score = 40.3 bits (93), Expect = 0.089, Method: Composition-based stats. Identities = 19/107 (17%), Positives = 39/107 (36%), Gaps = 7/107 (6%) Query: 8 TIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDN 67 + + + S +L + + AL ++WV + DN Sbjct: 10 IASSAGDDAFALTEAAVALSRAL------ATADKPALAAALEGNFQLWVGIRTLVSRSDN 63 Query: 68 HLPQEVKLNLISIGLWVLKECERIRRNKSNS-YQDIIDVISIVRDGL 113 LPQ+VK NLI + + ++ + + +I+ + +GL Sbjct: 64 PLPQDVKDNLIRLSQYTAQKTFELHDGVDEDTVESLINTNLQIAEGL 110 >gi|222428545|gb|ACM50166.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 867 Score = 40.3 bits (93), Expect = 0.091, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 15/87 (17%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL + ++ EAL Y +W + + QE+K + IS+ + V Sbjct: 786 LLIVTRTVELLGRRGWEALKY---LWNLL--------QYWIQELKNSAISLLNATAIAVA 834 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDG 112 + +RI +++ II + +R G Sbjct: 835 EGTDRILEGLQRAFRAIIHIPRRIRQG 861 >gi|116518678|gb|ABJ99563.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 867 Score = 40.3 bits (93), Expect = 0.091, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 15/87 (17%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL + ++ EAL Y +W + + QE+K + IS+ + V Sbjct: 786 LLIVTRTVELLGRRGWEALKY---LWNLL--------QYWIQELKNSAISLLNATAIAVA 834 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDG 112 + +RI +++ II + +R G Sbjct: 835 EGTDRILEGLQRAFRAIIHIPRRIRQG 861 >gi|288962913|ref|YP_003453207.1| hypothetical protein AZL_e03180 [Azospirillum sp. B510] gi|288915179|dbj|BAI76663.1| hypothetical protein AZL_e03180 [Azospirillum sp. B510] Length = 193 Score = 40.3 bits (93), Expect = 0.10, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 40/91 (43%), Gaps = 4/91 (4%) Query: 27 SISLLSIAHKS-LPNSKQAVE-ALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWV 84 SI LL A S + V AL ++W+ L+++D + EVK NL ++ +V Sbjct: 59 SIVLLQAAGSLLDSESPEKVNVALDQNLKLWIAIKTVLLNDDCPVEPEVKANLRNLAQYV 118 Query: 85 LKECERIRRN--KSNSYQDIIDVISIVRDGL 113 + + +++ + + + +GL Sbjct: 119 VSTTMLATQGAIETSKLVSLARLNMNIAEGL 149 >gi|313511193|gb|ADR66761.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 850 Score = 39.1 bits (90), Expect = 0.19, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLIS----IGLWVL 85 LL +A ++ E L Y +W + + QE++ + IS I + V Sbjct: 769 LLIVARIVELVGRRGWETLKY---LWNIL--------QYWGQELRNSAISLFNAIAIAVA 817 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI +++ I + +R GL+ Sbjct: 818 EGTDRIIEIGQRAFRAFIHIPRRIRQGLE 846 >gi|225348165|gb|ACN87121.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 848 Score = 39.1 bits (90), Expect = 0.19, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 36/89 (40%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A + EAL Y +W + + QE++ + +++ + V Sbjct: 767 LLIAARIVELLGRGGWEALKY---LWNLL--------QYWIQELRNSAVNLLNTTAIAVA 815 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI ++ II + +R GL+ Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGLE 844 >gi|225348175|gb|ACN87126.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 848 Score = 38.7 bits (89), Expect = 0.26, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y +W + + QE++ + +++ + V Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLL--------QYWIQELRNSAVNLLNTTAIAVA 815 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI ++ II + +R GL+ Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGLE 844 >gi|225348177|gb|ACN87127.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 848 Score = 38.7 bits (89), Expect = 0.26, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y +W + + QE++ + +++ + V Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLL--------QYWIQELRNSAVNLLNTTAIAVA 815 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI ++ II + +R GL+ Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGLE 844 >gi|225348211|gb|ACN87144.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 848 Score = 38.7 bits (89), Expect = 0.26, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y +W + + QE++ + +++ + V Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLL--------QYWIQELRNSAVNLLNTTAIAVA 815 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI ++ II + +R GL+ Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGLE 844 >gi|225348181|gb|ACN87129.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 848 Score = 38.7 bits (89), Expect = 0.26, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y +W + + QE++ + +++ + V Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLL--------QYWIQELRNSAVNLLNTTAIAVA 815 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI ++ II + +R GL+ Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGLE 844 >gi|225348185|gb|ACN87131.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 848 Score = 38.7 bits (89), Expect = 0.27, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y +W + + QE++ + +++ + V Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLL--------QYWIQELRNSAVNLLNTTAIAVA 815 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI ++ II + +R GL+ Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGLE 844 >gi|225348167|gb|ACN87122.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 848 Score = 38.7 bits (89), Expect = 0.27, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y +W + + QE++ + +++ + V Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLL--------QYWIQELRNSAVNLLNTTAIAVA 815 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI ++ II + +R GL+ Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGLE 844 >gi|225348205|gb|ACN87141.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 848 Score = 38.7 bits (89), Expect = 0.28, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y +W + + QE++ + +++ + V Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLL--------QYWIQELRNSAVNLLNTTAIAVA 815 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI ++ II + +R GL+ Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGLE 844 >gi|225348189|gb|ACN87133.1| envelope glycoprotein [Human immunodeficiency virus 1] gi|225348191|gb|ACN87134.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 848 Score = 38.7 bits (89), Expect = 0.28, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y +W + + QE++ + +++ + V Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLL--------QYWIQELRNSAVNLLNTTAIAVA 815 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI ++ II + +R GL+ Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGLE 844 >gi|225348209|gb|ACN87143.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 848 Score = 38.7 bits (89), Expect = 0.28, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y +W + + QE++ + +++ + V Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLL--------QYWIQELRNSAVNLLNTTAIAVA 815 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI ++ II + +R GL+ Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGLE 844 >gi|225348207|gb|ACN87142.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 848 Score = 38.7 bits (89), Expect = 0.28, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y +W + + QE++ + +++ + V Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLL--------QYWIQELRNSAVNLLNTTAIAVA 815 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI ++ II + +R GL+ Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGLE 844 >gi|225348199|gb|ACN87138.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 848 Score = 38.7 bits (89), Expect = 0.28, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y +W + + QE++ + +++ + V Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLL--------QYWIQELRNSAVNLLNTTAIAVA 815 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI ++ II + +R GL+ Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGLE 844 >gi|225348193|gb|ACN87135.1| envelope glycoprotein [Human immunodeficiency virus 1] gi|225348195|gb|ACN87136.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 848 Score = 38.7 bits (89), Expect = 0.28, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y +W + + QE++ + +++ + V Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLL--------QYWIQELRNSAVNLLNTTAIAVA 815 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI ++ II + +R GL+ Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGLE 844 >gi|225348171|gb|ACN87124.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 843 Score = 38.7 bits (89), Expect = 0.28, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y +W + + QE++ + +++ + V Sbjct: 762 LLIAARIVELLGRRGWEALKY---LWNLL--------QYWIQELRNSAVNLLNTTAIAVA 810 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI ++ II + +R GL+ Sbjct: 811 EGTDRIIELVQRGFRAIIHIPRRIRQGLE 839 >gi|225348183|gb|ACN87130.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 848 Score = 38.7 bits (89), Expect = 0.28, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y +W + + QE++ + +++ + V Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLL--------QYWIQELRNSAVNLLNTTAIAVA 815 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI ++ II + +R GL+ Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGLE 844 >gi|225348179|gb|ACN87128.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 843 Score = 38.7 bits (89), Expect = 0.28, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y +W + + QE++ + +++ + V Sbjct: 762 LLIAARIVELLGRRGWEALKY---LWNLL--------QYWIQELRNSAVNLLNTTAIAVA 810 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI ++ II + +R GL+ Sbjct: 811 EGTDRIIELVQRGFRAIIHIPRRIRQGLE 839 >gi|225348173|gb|ACN87125.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 848 Score = 38.7 bits (89), Expect = 0.28, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y +W + + QE++ + +++ + V Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLL--------QYWIQELRNSAVNLLNTTAIAVA 815 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI ++ II + +R GL+ Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGLE 844 >gi|225348203|gb|ACN87140.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 848 Score = 38.7 bits (89), Expect = 0.29, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y +W + + QE++ + +++ + V Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLL--------QYWIQELRNSAVNLLNTTAIAVA 815 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI ++ II + +R GL+ Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGLE 844 >gi|225348201|gb|ACN87139.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 848 Score = 38.7 bits (89), Expect = 0.29, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 15/88 (17%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y +W + + QE++ + +++ + V Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLL--------QYWIQELRNSAVNLLNTTAIAVA 815 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113 + +RI ++ II + +R GL Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGL 843 >gi|225348197|gb|ACN87137.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 848 Score = 38.7 bits (89), Expect = 0.29, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y +W + + QE++ + +++ + V Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLL--------QYWIQELRNSAVNLLNTTAIAVA 815 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI ++ II + +R GL+ Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGLE 844 >gi|300113840|ref|YP_003760415.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Nitrosococcus watsonii C-113] gi|299539777|gb|ADJ28094.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Nitrosococcus watsonii C-113] Length = 1500 Score = 38.4 bits (88), Expect = 0.30, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 12/118 (10%) Query: 2 RQYYHETIQESSIECRKRE---HWILDRSISLLSIAHKSLPNSKQ--AVEALFYTSRVWV 56 Q+Y ++ ++++ E L+++ L + + + +EAL W Sbjct: 1212 YQFYERGMETAAVKRLGLEAELRRALEKNEFTLYYQPQIDLGTGEITTLEALIR----WD 1267 Query: 57 VFIQDLVSEDNHLPQEVKLNLI-SIGLWVLKE-CERIRRNKSNSYQDI-IDVISIVRD 111 L+ +P + LI SIG+WVL+E C ++R + I V R+ Sbjct: 1268 HPEHGLIPPSEFIPLAEETGLIASIGVWVLREACTQMRSWLQREFGPFRIAVNVSGRE 1325 >gi|297242447|gb|ADI24887.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 842 Score = 38.4 bits (88), Expect = 0.31, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL +A ++ EAL Y +W + + QE+K + IS+ + V Sbjct: 761 LLIVARIVELLGRRGWEALKY---LWNLL--------QYWGQELKNSAISLLNATAIAVA 809 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI +++ I+ + +R GL+ Sbjct: 810 EGTDRIIEIGQRAFRAILHIPRRIRQGLE 838 >gi|222428535|gb|ACM50158.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 874 Score = 38.4 bits (88), Expect = 0.35, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y W +Q + QE+K + +S+ + V Sbjct: 793 LLIAARIVELLGRRGWEALKY----WWSLLQ-------YWSQELKNSAVSLLNATAIAVA 841 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI +++ II + + +R GL+ Sbjct: 842 EGTDRIIEVAQRAFRAIIHIPTRIRQGLE 870 >gi|186969217|gb|ACC97467.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 845 Score = 38.0 bits (87), Expect = 0.43, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A + EAL Y +W + ++ QE+K + IS+ + V Sbjct: 764 LLIAARTVGLLGRNGWEALKY---LWNLL--------SYWGQELKNSAISLFDTLAIAVA 812 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 +R+ + + I+++ + +R GL+ Sbjct: 813 NWTDRVIEIGQRAGRAILNIPARIRQGLE 841 >gi|298205617|gb|ADI62034.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 855 Score = 38.0 bits (87), Expect = 0.44, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 38/88 (43%), Gaps = 15/88 (17%) Query: 31 LSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVLK 86 L A ++ EA+ Y +W + + QE+K + IS+ + V + Sbjct: 775 LIAARTVELLGRRGWEAIKY---LWNLL--------QYWIQELKSSAISLFDTTAIAVAE 823 Query: 87 ECERIRRNKSNSYQDIIDVISIVRDGLK 114 +RI ++ I+++ + +R GL+ Sbjct: 824 GTDRIIEIIQRGFRAILNIPTRIRQGLE 851 >gi|126309957|ref|XP_001379424.1| PREDICTED: similar to dynein, axonemal, heavy chain 8 [Monodelphis domestica] Length = 4730 Score = 37.6 bits (86), Expect = 0.52, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 44/97 (45%), Gaps = 24/97 (24%) Query: 35 HKSLPNSKQAVEALFYTSRVWVVFIQDLVS--EDNHLPQEVKLNLISIG------LWVLK 86 +S + + EA+ Y +D++S N++P EVK L+ +G +++ + Sbjct: 4447 KESGGGAGETREAIVY------RLAEDMLSKLPPNYIPHEVKARLVKMGHLNSMNIFLRQ 4500 Query: 87 ECERIRR---NKSNSYQDI-------IDVISIVRDGL 113 E +R+++ +S D+ I + +RD L Sbjct: 4501 EIDRMQKVITRLRSSLSDLKLAIEGTIIMSENLRDAL 4537 >gi|295238825|gb|ADF84207.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 857 Score = 37.6 bits (86), Expect = 0.56, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLIS----IGLWVL 85 LL A ++ EAL Y W + + + QE+K + +S I + V Sbjct: 776 LLIAARIVELLGRRGWEALKY---WWNLLL--------YWXQELKNSAVSLFNAIAIAVA 824 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +R+ + + I ++ +R GL+ Sbjct: 825 EGTDRVIEGVQRACRAICNIPRRIRQGLE 853 >gi|50556310|ref|XP_505563.1| YALI0F18106p [Yarrowia lipolytica] gi|49651433|emb|CAG78372.1| YALI0F18106p [Yarrowia lipolytica] Length = 696 Score = 37.6 bits (86), Expect = 0.57, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 2/73 (2%) Query: 10 QESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHL 69 Q+S E +RE + ++ LL K+++E F W I+D + Sbjct: 229 QDSLSEKEERERQAVLQAGELLQ-EDFRQLRQKESLENPFIDWDFWSRVIEDYATVAKEH 287 Query: 70 PQEVKLNLISIGL 82 P+++K IS G Sbjct: 288 PKQLKEA-ISAGF 299 >gi|226914996|gb|ACO90840.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 870 Score = 37.6 bits (86), Expect = 0.58, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL +A ++ EAL Y W + + QE++ + IS+ + V Sbjct: 789 LLIVARIVELLGRRGWEALKY---WWNLL--------QYWGQEIRNSAISLFNATAITVA 837 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI +Y+ II + +R GL+ Sbjct: 838 EGTDRILEVLQRAYRAIIHIPRRIRQGLE 866 >gi|298205609|gb|ADI62028.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 851 Score = 37.6 bits (86), Expect = 0.62, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 38/88 (43%), Gaps = 15/88 (17%) Query: 31 LSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVLK 86 L A ++ EA+ Y +W + + QE+K + IS+ + V + Sbjct: 771 LIAARTVEILGRRGWEAIKY---LWNLL--------QYWIQELKSSAISLFDTTAIAVAE 819 Query: 87 ECERIRRNKSNSYQDIIDVISIVRDGLK 114 +RI ++ I+++ + +R GL+ Sbjct: 820 GTDRIIEIIQRGFRAILNIPTRIRQGLE 847 >gi|45357380|gb|AAS58770.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 844 Score = 37.6 bits (86), Expect = 0.65, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLIS----IGLWVL 85 LL +A ++ EAL Y +W + + QE+K + +S I + V Sbjct: 763 LLIVARIVELLGRRGWEALKY---LWNLL--------QYWSQELKKSAVSLFNAIAIAVA 811 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI +Y+ I+ + +R GL+ Sbjct: 812 EGTDRIIEVIQRAYRAILHIPRRIRQGLE 840 >gi|61381178|gb|AAX45241.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 845 Score = 37.6 bits (86), Expect = 0.65, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL +A ++ EAL Y +W + + QE+K + IS+ + V Sbjct: 764 LLIVARTLELLGRRGWEALKY---LWNLL--------QYWIQELKNSAISLLNATAIAVA 812 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +R+ +Y+ I+++ + +R GL+ Sbjct: 813 EGTDRVIEIVQRAYRAILNIPTRIRQGLE 841 >gi|157782976|gb|ABV72402.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 848 Score = 37.6 bits (86), Expect = 0.67, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 39/89 (43%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL +A ++ EAL Y +W + + QE+K + IS+ + V Sbjct: 767 LLIVARTVELLGRRGWEALKY---LWNLL--------QYWIQELKNSAISLLNATAIAVA 815 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI +++ + + + +R GL+ Sbjct: 816 EGTDRIIEVAQRAFRAFLHIPTRIRQGLE 844 >gi|190181970|gb|ACE71848.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 866 Score = 37.2 bits (85), Expect = 0.70, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 47/133 (35%), Gaps = 35/133 (26%) Query: 6 HETIQESSIECRKREHWILD-------------------RSISLLSIAHK-SLPNSKQAV 45 E +E R R + D R LL IA + + ++ Sbjct: 741 EEIEEEGGDRDRDRSRILADGFLAIIWVDLRSLFLFSYHRLRDLLLIATRIAGLLGRRGW 800 Query: 46 EALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVLKECERIRRNKSNSYQD 101 EAL Y W + + + QE+K + +S+ + V + +RI + Sbjct: 801 EALKY---WWNLLL--------YWSQELKNSAVSLLNATAIAVAEGTDRIIEILQTILRA 849 Query: 102 IIDVISIVRDGLK 114 II + +R GL+ Sbjct: 850 IIHIPRRIRQGLE 862 >gi|190181935|gb|ACE71820.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 866 Score = 37.2 bits (85), Expect = 0.71, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 47/133 (35%), Gaps = 35/133 (26%) Query: 6 HETIQESSIECRKREHWILD-------------------RSISLLSIAHK-SLPNSKQAV 45 E +E R R + D R LL IA + + ++ Sbjct: 741 EEIEEEGGDRDRDRSRILADGFLAIIWVDLRSLFLFNYHRLRDLLLIATRIAGLLGRRGW 800 Query: 46 EALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVLKECERIRRNKSNSYQD 101 EAL Y W + + + QE+K + +S+ + V + +RI + Sbjct: 801 EALKY---WWNLLL--------YWSQELKNSAVSLLNATAIAVAEGTDRIIEILQTILRA 849 Query: 102 IIDVISIVRDGLK 114 II + +R GL+ Sbjct: 850 IIHIPRRIRQGLE 862 >gi|190180650|gb|ACE70835.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 874 Score = 37.2 bits (85), Expect = 0.71, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLIS----IGLWVL 85 LL +A ++ EAL Y W + + QE++ + IS I + V Sbjct: 793 LLIVARIVETLGRRGWEALKY---WWNLL--------QYWSQELRNSAISLLDAIAIAVS 841 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI +++ I+++ + +R GL+ Sbjct: 842 EGTDRIIEVVRRAFRAILNIPTRIRQGLE 870 >gi|153946606|gb|ABS53242.1| envelope glycoprotein [Human immunodeficiency virus 1] gi|190181930|gb|ACE71816.1| envelope glycoprotein [Human immunodeficiency virus 1] gi|190181950|gb|ACE71832.1| envelope glycoprotein [Human immunodeficiency virus 1] gi|190181955|gb|ACE71836.1| envelope glycoprotein [Human immunodeficiency virus 1] gi|190181965|gb|ACE71844.1| envelope glycoprotein [Human immunodeficiency virus 1] gi|190181975|gb|ACE71852.1| envelope glycoprotein [Human immunodeficiency virus 1] gi|190181980|gb|ACE71856.1| envelope glycoprotein [Human immunodeficiency virus 1] gi|190181985|gb|ACE71860.1| envelope glycoprotein [Human immunodeficiency virus 1] gi|190181990|gb|ACE71864.1| envelope glycoprotein [Human immunodeficiency virus 1] gi|190181995|gb|ACE71868.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 866 Score = 37.2 bits (85), Expect = 0.72, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 47/133 (35%), Gaps = 35/133 (26%) Query: 6 HETIQESSIECRKREHWILD-------------------RSISLLSIAHK-SLPNSKQAV 45 E +E R R + D R LL IA + + ++ Sbjct: 741 EEIEEEGGDRDRDRSRILADGFLAIIWVDLRSLFLFSYHRLRDLLLIATRIAGLLGRRGW 800 Query: 46 EALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVLKECERIRRNKSNSYQD 101 EAL Y W + + + QE+K + +S+ + V + +RI + Sbjct: 801 EALKY---WWNLLL--------YWSQELKNSAVSLLNATAIAVAEGTDRIIEILQTILRA 849 Query: 102 IIDVISIVRDGLK 114 II + +R GL+ Sbjct: 850 IIHIPRRIRQGLE 862 >gi|190182000|gb|ACE71872.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 866 Score = 37.2 bits (85), Expect = 0.73, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 47/133 (35%), Gaps = 35/133 (26%) Query: 6 HETIQESSIECRKREHWILD-------------------RSISLLSIAHK-SLPNSKQAV 45 E +E R R + D R LL IA + + ++ Sbjct: 741 EEIEEEGGDRDRDRSRILADGFLAIIWVDLRSLFLFSYHRLRDLLLIATRIAGLLGRRGW 800 Query: 46 EALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVLKECERIRRNKSNSYQD 101 EAL Y W + + + QE+K + +S+ + V + +RI + Sbjct: 801 EALKY---WWNLLL--------YWSQELKNSAVSLLNATAIAVAEGTDRIIEILQTILRA 849 Query: 102 IIDVISIVRDGLK 114 II + +R GL+ Sbjct: 850 IIHIPRRIRQGLE 862 >gi|324035338|gb|ADY17400.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 870 Score = 37.2 bits (85), Expect = 0.73, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLIS----IGLWVL 85 LL A ++ EAL Y +W + + QE++ + IS I + V Sbjct: 789 LLIAARIVELLGRRGWEALKY---LWNLL--------QYWGQELRNSAISLLNAIAIAVA 837 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI + I+ + + +R GL+ Sbjct: 838 EGTDRIIEILQRTCGAILHIPTRIRQGLE 866 >gi|59710072|gb|AAW88565.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 837 Score = 37.2 bits (85), Expect = 0.74, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL +A ++ EAL Y +W + + QE+K + IS+ + V Sbjct: 756 LLIVARTLELLGRRGWEALKY---LWSLL--------QYWIQELKNSAISLLNATAIAVA 804 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +R+ +Y+ I+++ + +R GL+ Sbjct: 805 EGTDRVIEIVQRAYRAILNIPTRIRQGLE 833 >gi|298205613|gb|ADI62031.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 855 Score = 37.2 bits (85), Expect = 0.75, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 38/88 (43%), Gaps = 15/88 (17%) Query: 31 LSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVLK 86 L A ++ EA+ Y +W + + QE+K + IS+ + + + Sbjct: 775 LIAARTVEILGRRGWEAIKY---LWNLL--------QYWIQELKSSAISLFDTTAIAIAE 823 Query: 87 ECERIRRNKSNSYQDIIDVISIVRDGLK 114 +RI ++ I+++ + +R GL+ Sbjct: 824 GTDRIIEIIQRGFRAILNIPTRIRQGLE 851 >gi|238734209|gb|ACR55442.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 868 Score = 37.2 bits (85), Expect = 0.83, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLIS----IGLWVL 85 LL +A ++ EAL Y W + + + QE+K + +S I + V Sbjct: 787 LLIVARIVELLGRRGWEALRY---WWNLLL--------YWSQELKNSAVSLYNAIAIAVA 835 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI S++ I+ + + +R GL+ Sbjct: 836 EGTDRIIEIVQRSFRAILHIPTRIRQGLE 864 >gi|90993890|gb|ABE03508.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 846 Score = 37.2 bits (85), Expect = 0.86, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLIS----IGLWVL 85 LL A ++ EAL Y W + + QE+K + +S I + V Sbjct: 765 LLIAARIVEILGRRGWEALKY---WWNLL--------QYWSQELKNSAVSLLNAIAIAVA 813 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI +++ I+ + + +R GL+ Sbjct: 814 EGTDRILEILQRAFRAILHIPTRIRQGLE 842 >gi|326370908|gb|ADZ56656.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 850 Score = 37.2 bits (85), Expect = 0.87, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 37/89 (41%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ E L Y +W + + QE+K + +S+ + V Sbjct: 769 LLIAARLVELLGRRGWEXLKY---LWNLL--------QYWSQELKNSAVSLLNTTAVAVA 817 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +R+ +++ +I + +R GL+ Sbjct: 818 EGTDRVIEAVQRAFRALIHIPRRIRQGLE 846 >gi|157782974|gb|ABV72401.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 850 Score = 37.2 bits (85), Expect = 0.88, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 15/87 (17%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL +A ++ EAL Y +W + + QE+K + IS+ + V Sbjct: 769 LLIVARTVELLGRRGWEALKY---LWNLL--------QYWIQELKNSAISLLNATAIAVA 817 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDG 112 + +RI +Y+ I+++ +R G Sbjct: 818 EGTDRIIEVAQRAYRAILNIPRRIRQG 844 >gi|90993907|gb|ABE03516.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 853 Score = 36.8 bits (84), Expect = 0.92, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLIS----IGLWVL 85 LL A ++ EAL Y W + + QE+K + +S I + V Sbjct: 772 LLIAARIVEILGRRGWEALKY---WWNLL--------QYWSQELKNSAVSLLNAIAIAVA 820 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI +++ I+ + + +R GL+ Sbjct: 821 EGTDRILEILQRAFRAILHIPTRIRQGLE 849 >gi|325636076|gb|ADZ33849.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 861 Score = 36.8 bits (84), Expect = 0.93, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y W + + QE+K + +S+ + V Sbjct: 780 LLIAARIVELLGRRGWEALKY---WWNLL--------QYWSQELKNSAVSLLNTTAIVVA 828 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI +++ II + + +R GL+ Sbjct: 829 EGTDRIVEVVQRAFRAIIHIPTRIRQGLE 857 >gi|325636005|gb|ADZ33787.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 861 Score = 36.8 bits (84), Expect = 0.93, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y W + + QE+K + +S+ + V Sbjct: 780 LLIAARIVELLGRRGWEALKY---WWNLL--------QYWSQELKNSAVSLLNTTAIVVA 828 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI +++ II + + +R GL+ Sbjct: 829 EGTDRIVEVVQRAFRAIIHIPTRIRQGLE 857 >gi|325635967|gb|ADZ33754.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 861 Score = 36.8 bits (84), Expect = 0.93, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y W + + QE+K + +S+ + V Sbjct: 780 LLIAARIVELLGRRGWEALKY---WWNLL--------QYWSQELKNSAVSLLNTTAIVVA 828 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI +++ II + + +R GL+ Sbjct: 829 EGTDRIVEVVQRAFRAIIHIPTRIRQGLE 857 >gi|325635836|gb|ADZ33640.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 861 Score = 36.8 bits (84), Expect = 0.95, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y W + + QE+K + +S+ + V Sbjct: 780 LLIAARIVELLGRRGWEALKY---WWNLL--------QYWSQELKNSAVSLLNTTAIVVA 828 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI +++ II + + +R GL+ Sbjct: 829 EGTDRIVEVVQRAFRAIIHIPTRIRQGLE 857 >gi|325636052|gb|ADZ33828.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 861 Score = 36.8 bits (84), Expect = 0.96, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y W + + QE+K + +S+ + V Sbjct: 780 LLIAARIVELLGRRGWEALKY---WWNLL--------QYWSQELKNSAVSLLNTTAIVVA 828 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI +++ II + + +R GL+ Sbjct: 829 EGTDRIVEVVQRAFRAIIHIPTRIRQGLE 857 >gi|61381163|gb|AAX45238.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 850 Score = 36.8 bits (84), Expect = 0.99, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLIS----IGLWVL 85 LL +A ++ EA+ Y +W + + QE+K + IS I + V Sbjct: 769 LLIVARIVELLGRRGWEAIKY---LWNLL--------QYWIQELKNSAISLLNAIAIAVA 817 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +R+ Y+ I+++ + +R GL+ Sbjct: 818 EGTDRVIEIVQRVYRAILNIPTRIRQGLE 846 >gi|239787500|emb|CAX83970.1| conserved uncharacterized protein [uncultured bacterium] Length = 126 Score = 36.8 bits (84), Expect = 1.0, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 7/94 (7%) Query: 23 ILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGL 82 L ++ LL A + + + V AL ++WV D +LP E K NL + Sbjct: 24 ALVKAALLLDQAKMNRADKQAMVVALDNNLQLWVAIRTIARQPDYNLPDEAKENLAQLSH 83 Query: 83 WV----LKECERIRRNKSNSYQDIIDVISIVRDG 112 +V K I + ++++ + +G Sbjct: 84 FVSDLTFKHGLTIT---DAALDALVNINLRLAEG 114 >gi|170279728|gb|ACB11844.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 345 Score = 36.8 bits (84), Expect = 1.0, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y +W + + QE++ + IS+ + V Sbjct: 264 LLIAARIVELLGRRGWEALKY---LWNLL--------QYWSQELRNSAISLLNTTAIAVA 312 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI ++ I ++ +R GL+ Sbjct: 313 EGTDRIIEVLQRIFRAICNIPRRIRQGLE 341 >gi|187758040|gb|ACD32473.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 865 Score = 36.8 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLIS----IGLWVL 85 LL +A ++ EAL Y W + + QE+K + IS I + V Sbjct: 784 LLIVARTVELLGRRGWEALKY---WWNLL--------QYWSQELKNSAISLLNAIAIAVA 832 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI ++ I+ + + +R GL+ Sbjct: 833 EGTDRIIEVLQRVFRAILHIPTRIRQGLE 861 >gi|307728681|ref|YP_003905905.1| glycoside hydrolase 15-related protein [Burkholderia sp. CCGE1003] gi|307583216|gb|ADN56614.1| glycoside hydrolase 15-related protein [Burkholderia sp. CCGE1003] Length = 591 Score = 36.8 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 25/68 (36%) Query: 32 SIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERI 91 AH + P AL T R W +I PQ V+ +L+++ + + I Sbjct: 180 KRAHHAAPQPLDVQHALDETQRFWRNWIDSFDDSRTAWPQAVRRSLLTLKALMHRRTGAI 239 Query: 92 RRNKSNSY 99 + S Sbjct: 240 VAAPTTSL 247 >gi|187760554|gb|ACD34460.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 853 Score = 36.8 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 7/85 (8%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECE 89 LL A ++ EA+ Y + + +IQ+L + L L +I + V + + Sbjct: 772 LLIAARSVETLGRRVWEAIKYWWNLLLYWIQELRNSAVGL-------LDTIAIAVAEGTD 824 Query: 90 RIRRNKSNSYQDIIDVISIVRDGLK 114 RI + ++ I+ + + +R GL+ Sbjct: 825 RIIESVRRIFRAILHIPTRIRQGLE 849 >gi|187758052|gb|ACD32481.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 865 Score = 36.8 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLIS----IGLWVL 85 LL +A ++ EAL Y W + + QE+K + IS I + V Sbjct: 784 LLIVARTVELLGRRGWEALKY---WWNLL--------QYWSQELKNSAISLLNAIAIAVA 832 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI ++ I+ + + +R GL+ Sbjct: 833 EGTDRIIEVLQRVFRAILHIPTRIRQGLE 861 >gi|187758043|gb|ACD32475.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 860 Score = 36.8 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLIS----IGLWVL 85 LL +A ++ EAL Y W + + QE+K + IS I + V Sbjct: 779 LLIVARTVELLGRRGWEALKY---WWNLL--------QYWSQELKNSAISLLNAIAIAVA 827 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI ++ I+ + + +R GL+ Sbjct: 828 EGTDRIIEVLQRVFRAILHIPTRIRQGLE 856 >gi|263200970|gb|ACY70072.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 847 Score = 36.8 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 39/100 (39%), Gaps = 21/100 (21%) Query: 19 REHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLI 78 R +L I ++ EAL Y +W + + QE+K + + Sbjct: 761 RLRDLLSIVI------RTVELLGRRGWEALKY---LWNIL--------QYWSQELKNSAV 803 Query: 79 SI----GLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 S+ + V + +R+ ++ II + + +R GL+ Sbjct: 804 SLLNTVAIVVAEGTDRVIEALQRIFRAIIHIPTRIRQGLE 843 >gi|187760510|gb|ACD34425.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 853 Score = 36.4 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 7/85 (8%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECE 89 LL A ++ EA+ Y + + +IQ+L + L L +I + V + + Sbjct: 772 LLIAARSVETLGRRVWEAIKYWWNLLLYWIQELRNSAVGL-------LDTIAIAVAEGTD 824 Query: 90 RIRRNKSNSYQDIIDVISIVRDGLK 114 RI + ++ I+ + + +R GL+ Sbjct: 825 RIIESVRRIFRAILHIPTRIRQGLE 849 >gi|187760487|gb|ACD34407.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 853 Score = 36.4 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLN----LISIGLWVL 85 LL A ++ EA+ Y W + + QE++ + L +I + V Sbjct: 772 LLIAARTVGTLGRRVWEAIKY---WWNLL--------QYWSQELRNSAVGLLDTIAIAVA 820 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI + ++ I+ + + +R GL+ Sbjct: 821 EGTDRIIESVRRIFRAILHIPTRIRQGLE 849 >gi|298199679|gb|ADI59774.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 856 Score = 36.4 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 38/88 (43%), Gaps = 15/88 (17%) Query: 31 LSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVLK 86 L A ++ EA+ Y +W + + QE+K +++S+ + V + Sbjct: 776 LIAARIVELLGRRGWEAIKY---LWNIL--------QYWIQELKNSVVSLFNATAIXVAE 824 Query: 87 ECERIRRNKSNSYQDIIDVISIVRDGLK 114 +RI +++ I ++ +R GL+ Sbjct: 825 GTDRIIEAIQAAFRAIXNIPRRIRQGLE 852 >gi|237736120|ref|ZP_04566601.1| sodium:dicarboxylate symporter [Fusobacterium mortiferum ATCC 9817] gi|229421831|gb|EEO36878.1| sodium:dicarboxylate symporter [Fusobacterium mortiferum ATCC 9817] Length = 415 Score = 36.4 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 35/87 (40%), Gaps = 8/87 (9%) Query: 28 ISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKE 87 + L+ A + + + + + + + + N L +K N I I W + Sbjct: 103 VELILKATEGSIAPPENIYGVLK-----GLLMNLVDNPMNAL---LKGNYIGILFWSILF 154 Query: 88 CERIRRNKSNSYQDIIDVISIVRDGLK 114 +R K ++ Q +ID+ ++ +K Sbjct: 155 GGFLRDGKESTKQALIDISEVILKTVK 181 >gi|226914906|gb|ACO90771.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 726 Score = 36.4 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL +A ++ EAL Y W + + QE++ + +S+ + V Sbjct: 645 LLIVARTVEILGRRGWEALKY---WWNLL--------QYWSQELRSSAVSLLNATAVAVA 693 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI ++ II + VR GL+ Sbjct: 694 EGTDRIIEVVQRGFRAIIHIPRRVRQGLE 722 >gi|269986102|gb|ACZ57355.1| envelope glycoprotein [Human immunodeficiency virus 1] gi|291603755|gb|ADE20148.1| envelope glycoprotein [Human immunodeficiency virus 1] gi|291603765|gb|ADE20157.1| envelope glycoprotein [Human immunodeficiency virus 1] gi|291603775|gb|ADE20166.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 849 Score = 36.4 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL +A ++ EAL Y W + + QE+K + IS+ + V Sbjct: 768 LLIVARIVELLGRRGWEALRY---WWNIL--------QYWIQELKNSAISLLNTTAIAVA 816 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI +Y+ II + VR GL+ Sbjct: 817 EGTDRIIEVAQRAYRAIIHIPRRVRQGLE 845 >gi|295238842|gb|ADF84215.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 864 Score = 36.4 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLIS----IGLWVL 85 LL A ++ EAL Y W + + QE+K + IS I + V Sbjct: 783 LLIAARIVELLGRRGWEALKY---WWNLL--------QYWSQELKKSAISLFDTIAIAVA 831 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI +++ I+ + +R GL+ Sbjct: 832 EGTDRIIEXARRAFRAILHIPRRIRQGLE 860 >gi|90993905|gb|ABE03515.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 853 Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 15/88 (17%) Query: 31 LSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLIS----IGLWVLK 86 L A ++ EAL Y W + + QE+K + IS I + V + Sbjct: 773 LVAARIVEILGRRGWEALKY---WWNLL--------QYWSQELKNSAISLFNAIAIAVAE 821 Query: 87 ECERIRRNKSNSYQDIIDVISIVRDGLK 114 +RI +++ I+ + + +R GL+ Sbjct: 822 GTDRILEILQRAFRAILHIPTRIRQGLE 849 >gi|2853998|gb|AAC02524.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 852 Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 39/89 (43%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL + ++ EAL Y +W + + QE+K + +S+ + V Sbjct: 771 LLIVTRIVELLGRRGWEALKY---LWNLL--------QYWSQELKNSAVSLLNATAIAVA 819 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +R+ +++ II + + +R GL+ Sbjct: 820 EGTDRVIEVIQRTFRAIIHIPTRIRQGLE 848 >gi|325656990|gb|ADZ38988.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 851 Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 21/92 (22%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRV---WVVFIQDLVSEDNHLPQEVKLNLISI----GL 82 LL +A +++ EAL Y + W QE+K + IS+ + Sbjct: 770 LLIVARVVELLGRRSWEALKYWRNLLQYWG--------------QELKNSAISLLNATAI 815 Query: 83 WVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 V + +RI Y+ II + + +R GL+ Sbjct: 816 AVAEGTDRIIEIVIRVYRAIIHIPTRIRQGLE 847 >gi|187760870|gb|ACD34711.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 865 Score = 36.4 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y W + + QE+K + IS+ + V Sbjct: 784 LLIAARIVGTLGRRVWEALKY---WWNLL--------QYWSQELKNSAISLLNATAIAVA 832 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI ++ I+ + +R GL+ Sbjct: 833 EGTDRIIEIVQRGFRAILHIPVRIRQGLE 861 >gi|187760822|gb|ACD34673.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 865 Score = 36.4 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y W + + QE+K + IS+ + V Sbjct: 784 LLIAARIVGTLGRRVWEALKY---WWNLL--------QYWSQELKNSAISLLNATAIAVA 832 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI ++ I+ + +R GL+ Sbjct: 833 EGTDRIIEIVQRGFRAILHIPVRIRQGLE 861 >gi|187760788|gb|ACD34646.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 865 Score = 36.4 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y W + + QE+K + IS+ + V Sbjct: 784 LLIAARIVGTLGRRVWEALKY---WWNLL--------QYWSQELKNSAISLLNATAIAVA 832 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI ++ I+ + +R GL+ Sbjct: 833 EGTDRIIEIVQRGFRAILHIPVRIRQGLE 861 >gi|326370848|gb|ADZ56604.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 848 Score = 36.4 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL +A ++ EAL Y W +Q + QE+K + +S+ + V Sbjct: 767 LLIVARTVELLGRRGWEALKY----WGNLLQ-------YWNQELKNSAVSLLNATAIAVA 815 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI ++ I ++ +R GL+ Sbjct: 816 EGTDRIIEIARGIFRAICNIPRRIRQGLE 844 >gi|157005060|gb|ABV00763.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 861 Score = 36.4 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLIS----IGLWVL 85 LL A ++ EAL Y W + + QE+K + +S I + V Sbjct: 780 LLIAARTVELLGRRGWEALKY---WWNLL--------QYWIQELKTSAVSLFNAIAIAVA 828 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI ++ I+ + + +R GL+ Sbjct: 829 EGTDRILEVLQRIFRAILHIPTRIRQGLE 857 >gi|90993894|gb|ABE03510.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 854 Score = 36.1 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 15/88 (17%) Query: 31 LSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLIS----IGLWVLK 86 L A ++ EAL Y W + + QE+K + IS I + V + Sbjct: 774 LVAARIVEILGRRGWEALKY---WWNLL--------QYWSQELKNSAISLLNAIAIAVAE 822 Query: 87 ECERIRRNKSNSYQDIIDVISIVRDGLK 114 +RI +++ I+ + + +R GL+ Sbjct: 823 GTDRILEILQRAFRAILHIPTRIRQGLE 850 >gi|324035332|gb|ADY17397.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 867 Score = 36.1 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y +W + + QE++ + IS+ + V Sbjct: 786 LLIAARIVELLGRRGWEALKY---LWNLL--------QYWGQELRNSAISLLNATAIAVA 834 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI + + I+ + + +R GL+ Sbjct: 835 EGTDRIIEILQRTCRAILRIPTRIRQGLE 863 >gi|324035320|gb|ADY17391.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 869 Score = 36.1 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y +W + + QE++ + IS+ + V Sbjct: 788 LLIAARIVELLGRRGWEALKY---LWNLL--------QYWGQELRNSAISLLNATAIAVA 836 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI + + I+ + + +R GL+ Sbjct: 837 EGTDRIIEILQRTCRAILRIPTRIRQGLE 865 >gi|170279726|gb|ACB11843.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 345 Score = 36.1 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y +W + + QE++ + IS+ + V Sbjct: 264 LLIAARIVELLGRRGWEALKY---LWNLL--------QYWSQELRNSAISLLNTTAIAVA 312 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI ++ I ++ +R GL+ Sbjct: 313 EGTDRIIEVLQRIFRAICNIPRRIRQGLE 341 >gi|157783012|gb|ABV72420.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 849 Score = 36.1 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y W + + QE+K + IS+ + V Sbjct: 768 LLIAARIVELLGRRGWEALKY---WWNLL--------QYWIQELKNSAISLLNATAIAVA 816 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI Y+ II++ + +R GL+ Sbjct: 817 EGTDRIIEVVQRIYRAIINIPTRIRQGLE 845 >gi|325657046|gb|ADZ39016.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 851 Score = 36.1 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL +A +++ EAL Y W + + QE+K + IS+ + V Sbjct: 770 LLIVARVVELLGRRSWEALKY---WWNLL--------QYWGQELKNSAISLLNATAIAVA 818 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI Y+ II + + +R GL+ Sbjct: 819 EGTDRIIEIVIRVYRAIIHIPTRIRQGLE 847 >gi|325657042|gb|ADZ39014.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 851 Score = 36.1 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL +A +++ EAL Y W + + QE+K + IS+ + V Sbjct: 770 LLIVARVVELLGRRSWEALKY---WWNLL--------QYWGQELKNSAISLLNATAIAVA 818 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI Y+ II + + +R GL+ Sbjct: 819 EGTDRIIEIVIRVYRAIIHIPTRIRQGLE 847 >gi|325657036|gb|ADZ39011.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 851 Score = 36.1 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL +A +++ EAL Y W + + QE+K + IS+ + V Sbjct: 770 LLIVARVVELLGRRSWEALKY---WWNLL--------QYWGQELKNSAISLLNATAIAVA 818 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI Y+ II + + +R GL+ Sbjct: 819 EGTDRIIEIVIRVYRAIIHIPTRIRQGLE 847 >gi|325656996|gb|ADZ38991.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 851 Score = 36.1 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL +A +++ EAL Y W + + QE+K + IS+ + V Sbjct: 770 LLIVARVVELLGRRSWEALKY---WWNLL--------QYWGQELKNSAISLLNATAIAVA 818 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI Y+ II + + +R GL+ Sbjct: 819 EGTDRIIEIVIRVYRAIIHIPTRIRQGLE 847 >gi|325656992|gb|ADZ38989.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 851 Score = 36.1 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL +A +++ EAL Y W + + QE+K + IS+ + V Sbjct: 770 LLIVARVVELLGRRSWEALKY---WWNLL--------QYWGQELKNSAISLLNATAIAVA 818 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI Y+ II + + +R GL+ Sbjct: 819 EGTDRIIEIVIRVYRAIIHIPTRIRQGLE 847 >gi|325657006|gb|ADZ38996.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 851 Score = 36.1 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL +A +++ EAL Y W + + QE+K + IS+ + V Sbjct: 770 LLIVARVVELLGRRSWEALKY---WWNLL--------QYWGQELKNSAISLLNATAIAVA 818 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI Y+ II + + +R GL+ Sbjct: 819 EGTDRIIEIVIRVYRAIIHIPTRIRQGLE 847 >gi|325656988|gb|ADZ38987.1| envelope glycoprotein [Human immunodeficiency virus 1] gi|325656998|gb|ADZ38992.1| envelope glycoprotein [Human immunodeficiency virus 1] gi|325657002|gb|ADZ38994.1| envelope glycoprotein [Human immunodeficiency virus 1] gi|325657004|gb|ADZ38995.1| envelope glycoprotein [Human immunodeficiency virus 1] gi|325657008|gb|ADZ38997.1| envelope glycoprotein [Human immunodeficiency virus 1] gi|325657010|gb|ADZ38998.1| envelope glycoprotein [Human immunodeficiency virus 1] gi|325657012|gb|ADZ38999.1| envelope glycoprotein [Human immunodeficiency virus 1] gi|325657014|gb|ADZ39000.1| envelope glycoprotein [Human immunodeficiency virus 1] gi|325657016|gb|ADZ39001.1| envelope glycoprotein [Human immunodeficiency virus 1] gi|325657018|gb|ADZ39002.1| envelope glycoprotein [Human immunodeficiency virus 1] gi|325657022|gb|ADZ39004.1| envelope glycoprotein [Human immunodeficiency virus 1] gi|325657024|gb|ADZ39005.1| envelope glycoprotein [Human immunodeficiency virus 1] gi|325657026|gb|ADZ39006.1| envelope glycoprotein [Human immunodeficiency virus 1] gi|325657030|gb|ADZ39008.1| envelope glycoprotein [Human immunodeficiency virus 1] gi|325657032|gb|ADZ39009.1| envelope glycoprotein [Human immunodeficiency virus 1] gi|325657034|gb|ADZ39010.1| envelope glycoprotein [Human immunodeficiency virus 1] gi|325657038|gb|ADZ39012.1| envelope glycoprotein [Human immunodeficiency virus 1] gi|325657040|gb|ADZ39013.1| envelope glycoprotein [Human immunodeficiency virus 1] gi|325657044|gb|ADZ39015.1| envelope glycoprotein [Human immunodeficiency virus 1] gi|325657048|gb|ADZ39017.1| envelope glycoprotein [Human immunodeficiency virus 1] gi|325657050|gb|ADZ39018.1| envelope glycoprotein [Human immunodeficiency virus 1] gi|325657052|gb|ADZ39019.1| envelope glycoprotein [Human immunodeficiency virus 1] gi|325657054|gb|ADZ39020.1| envelope glycoprotein [Human immunodeficiency virus 1] gi|325657058|gb|ADZ39022.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 851 Score = 36.1 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL +A +++ EAL Y W + + QE+K + IS+ + V Sbjct: 770 LLIVARVVELLGRRSWEALKY---WWNLL--------QYWGQELKNSAISLLNATAIAVA 818 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI Y+ II + + +R GL+ Sbjct: 819 EGTDRIIEIVIRVYRAIIHIPTRIRQGLE 847 >gi|190182879|gb|ACE72574.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 869 Score = 36.1 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y W +Q + QE+K + IS+ + V Sbjct: 788 LLIAARVVELLGRRGWEALKY----WWSLLQ-------YWSQEIKNSAISLLNTTAIAVA 836 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI ++ I + + +R GL+ Sbjct: 837 EGTDRIIEAARRIFRAICHIPTRIRQGLE 865 >gi|190182874|gb|ACE72570.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 868 Score = 36.1 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y W +Q + QE+K + IS+ + V Sbjct: 787 LLIAARVVELLGRRGWEALKY----WWSLLQ-------YWSQEIKNSAISLLNTTAIAVA 835 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI ++ I + + +R GL+ Sbjct: 836 EGTDRIIEAARRIFRAICHIPTRIRQGLE 864 >gi|190182869|gb|ACE72566.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 868 Score = 36.1 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y W +Q + QE+K + IS+ + V Sbjct: 787 LLIAARVVELLGRRGWEALKY----WWSLLQ-------YWSQEIKNSAISLLNTTAIAVA 835 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI ++ I + + +R GL+ Sbjct: 836 EGTDRIIEAARRIFRAICHIPTRIRQGLE 864 >gi|190182844|gb|ACE72546.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 879 Score = 36.1 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y W +Q + QE+K + IS+ + V Sbjct: 798 LLIAARVVELLGRRGWEALKY----WWSLLQ-------YWSQEIKNSAISLLNTTAIAVA 846 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI ++ I + + +R GL+ Sbjct: 847 EGTDRIIEAARRIFRAICHIPTRIRQGLE 875 >gi|325656994|gb|ADZ38990.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 851 Score = 36.1 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL +A +++ EAL Y W + + QE+K + IS+ + V Sbjct: 770 LLIVARVVELLGRRSWEALKY---WWNLL--------QYWGQELKNSAISLLNATAIAVA 818 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI Y+ II + + +R GL+ Sbjct: 819 EGTDRIIEIVIRVYRAIIHIPTRIRQGLE 847 >gi|187760559|gb|ACD34464.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 853 Score = 36.1 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 38/89 (42%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLIS----IGLWVL 85 LL A ++ E + Y W + + QE++ +++S I + V Sbjct: 772 LLIAARIVGTLGRRVWEVIKY---WWNLL--------QYWSQELRNSVVSLLDTIAIAVA 820 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI + ++ I+ + + +R GL+ Sbjct: 821 EGTDRIIESVRRIFRAILHIPTRIRQGLE 849 >gi|325657020|gb|ADZ39003.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 851 Score = 36.1 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL +A +++ EAL Y W + + QE+K + IS+ + V Sbjct: 770 LLIVARVVELLGRRSWEALKY---WWNLL--------QYWGQELKNSAISLLNATAIAVA 818 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI Y+ II + + +R GL+ Sbjct: 819 EGTDRIIEIVIRVYRAIIHIPTRIRQGLE 847 >gi|325657000|gb|ADZ38993.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 851 Score = 36.1 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL +A +++ EAL Y W + + QE+K + IS+ + V Sbjct: 770 LLIVARVVELLGRRSWEALKY---WWNLL--------QYWGQELKNSAISLLNATAIAVA 818 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI Y+ II + + +R GL+ Sbjct: 819 EGTDRIIEIVIRVYRAIIHIPTRIRQGLE 847 >gi|324035328|gb|ADY17395.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 871 Score = 36.1 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y +W + + QE++ + IS+ + V Sbjct: 790 LLIAARIVELLGRRGWEALKY---LWNLL--------QYWGQELRNSAISLLNATAIAVA 838 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI + I+ + + +R GL+ Sbjct: 839 EGTDRIIEILQRTCGAILHIPTRIRQGLE 867 >gi|325657028|gb|ADZ39007.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 851 Score = 36.1 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL +A +++ EAL Y W + + QE+K + IS+ + V Sbjct: 770 LLIVARVVELLGRRSWEALKY---WWNLL--------QYWGQELKNSAISLLNATAIAVA 818 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI Y+ II + + +R GL+ Sbjct: 819 EGTDRIIEIVIRVYRAIIHIPTRIRQGLE 847 >gi|190182908|gb|ACE72597.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 867 Score = 36.1 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y W + + QE+K + IS+ + V Sbjct: 786 LLIAARVVELLGRRGWEALKY---WWNLL--------QYWSQEIKNSTISLLNTTAIAVA 834 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI ++ I + + +R GL+ Sbjct: 835 EGTDRIIEAARRIFRAICHIPTRIRQGLE 863 >gi|190182893|gb|ACE72585.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 868 Score = 36.1 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y W + + QE+K + IS+ + V Sbjct: 787 LLIAARVVELLGRRGWEALKY---WWNLL--------QYWSQEIKNSTISLLNTTAIAVA 835 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI ++ I + + +R GL+ Sbjct: 836 EGTDRIIEAARRIFRAICHIPTRIRQGLE 864 >gi|190182864|gb|ACE72562.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 868 Score = 36.1 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y W + + QE+K + IS+ + V Sbjct: 787 LLIAARVVELLGRRGWEALKY---WWNLL--------QYWSQEIKNSTISLLNTTAIAVA 835 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI ++ I + + +R GL+ Sbjct: 836 EGTDRIIEAARRIFRAICHIPTRIRQGLE 864 >gi|190182859|gb|ACE72558.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 879 Score = 36.1 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y W + + QE+K + IS+ + V Sbjct: 798 LLIAARVVELLGRRGWEALKY---WWNLL--------QYWSQEIKNSTISLLNTTAIAVA 846 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI ++ I + + +R GL+ Sbjct: 847 EGTDRIIEAARRIFRAICHIPTRIRQGLE 875 >gi|190182854|gb|ACE72554.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 879 Score = 36.1 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y W + + QE+K + IS+ + V Sbjct: 798 LLIAARVVELLGRRGWEALKY---WWNLL--------QYWSQEIKNSTISLLNTTAIAVA 846 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI ++ I + + +R GL+ Sbjct: 847 EGTDRIIEAARRIFRAICHIPTRIRQGLE 875 >gi|153946469|gb|ABS53176.1| envelope glycoprotein [Human immunodeficiency virus 1] gi|190174856|gb|ACE66413.1| envelope glycoprotein [Human immunodeficiency virus 1] gi|190174861|gb|ACE66417.1| envelope glycoprotein [Human immunodeficiency virus 1] gi|190174866|gb|ACE66421.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 857 Score = 36.1 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 7/85 (8%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECE 89 LL A ++ EAL Y + +IQ+L + L L +I + V + + Sbjct: 776 LLIAARIVELLGRRGWEALKYWWNLLQYWIQELKNSAVSL-------LNAIAIAVAEGTD 828 Query: 90 RIRRNKSNSYQDIIDVISIVRDGLK 114 RI ++ I+ + +R GL+ Sbjct: 829 RIIEVLQRAFGAILHIPRRIRQGLE 853 >gi|74273398|gb|ABA01387.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 852 Score = 35.7 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL +A ++ EAL Y W +Q + QE+K + IS+ + V Sbjct: 771 LLIVARIVELLGRRGWEALKY----WGNLLQ-------YWSQELKNSAISLFNATAIAVA 819 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI ++ II + +R GL+ Sbjct: 820 EGTDRIIEIAQIIFRAIIHIPRRIRQGLE 848 >gi|295883792|gb|ADG57029.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 865 Score = 35.7 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL +A ++ EAL Y W + + QE+K + IS+ + V Sbjct: 784 LLIVARIVELLGRRGWEALKY---WWNLL--------QYWSQELKNSAISLLNATAIAVA 832 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI +++ I+ + + +R GL+ Sbjct: 833 EGTDRIIEIGQRTFRAILHIPTRIRQGLE 861 >gi|162147450|ref|YP_001601911.1| hypothetical protein GDI_1666 [Gluconacetobacter diazotrophicus PAl 5] gi|161786027|emb|CAP55609.1| hypothetical protein GDI1666 [Gluconacetobacter diazotrophicus PAl 5] Length = 132 Score = 35.7 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 46/109 (42%), Gaps = 1/109 (0%) Query: 6 HETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSE 65 +++I SS+ R+ + I L A S ++ + AL + R+W + + V + Sbjct: 10 YQSIAGSSLTGREADAACFRMLIDELKAAEASSDHTVRRH-ALARSQRLWAMIMNANVQD 68 Query: 66 DNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 PQE + +++ R + + +I + VRDGL+ Sbjct: 69 SGLTPQEDRQLFVTLAHRSQLYGIRAMLDPALPLTPLIRIAENVRDGLE 117 >gi|157783014|gb|ABV72421.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 852 Score = 35.7 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 7/85 (8%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECE 89 LL +A ++ EAL Y + +IQ+L + L L S + V + + Sbjct: 771 LLIVARIVEILGRRGWEALKYWWNLLQYWIQELKNSATSL-------LNSTAIAVAEGTD 823 Query: 90 RIRRNKSNSYQDIIDVISIVRDGLK 114 R+ +++ I+++ + +R GL+ Sbjct: 824 RVIEIAQRAFRAILNIPTRIRQGLE 848 >gi|74273408|gb|ABA01396.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 852 Score = 35.7 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL +A ++ EAL Y W +Q + QE+K + IS+ + V Sbjct: 771 LLIVARIVELLGRRGWEALKY----WGNLLQ-------YWSQELKNSAISLFNATAIAVA 819 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI ++ II + +R GL+ Sbjct: 820 EGTDRIIEIAQIIFRAIIHIPRRIRQGLE 848 >gi|209545559|ref|YP_002277788.1| hypothetical protein Gdia_3448 [Gluconacetobacter diazotrophicus PAl 5] gi|209533236|gb|ACI53173.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus PAl 5] Length = 131 Score = 35.7 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 46/109 (42%), Gaps = 1/109 (0%) Query: 6 HETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSE 65 +++I SS+ R+ + I L A S ++ + AL + R+W + + V + Sbjct: 9 YQSIAGSSLTGREADAACFRMLIDELKAAEASSDHTVRRH-ALARSQRLWAMIMNANVQD 67 Query: 66 DNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 PQE + +++ R + + +I + VRDGL+ Sbjct: 68 SGLTPQEDRQLFVTLAHRSQLYGIRAMLDPALPLTPLIRIAENVRDGLE 116 >gi|253999281|ref|YP_003051344.1| methyl-accepting chemotaxis sensory transducer [Methylovorus sp. SIP3-4] gi|253985960|gb|ACT50817.1| methyl-accepting chemotaxis sensory transducer [Methylovorus sp. SIP3-4] Length = 1011 Score = 35.7 bits (81), Expect = 2.3, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 14/91 (15%) Query: 9 IQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNH 68 + ES++ R++ ILDR++ + ++ + A++A SR + DN Sbjct: 49 VDESALVGREQAQEILDRAV----VTARANARTMLAMKATHQESR---------AAVDNL 95 Query: 69 LPQEVKLNLISIGLWVLKECERIRRNKSNSY 99 L ++ NL +G W L E K + Sbjct: 96 LANSLRQNLDLVGAWTLWEPNAFD-GKDKDF 125 >gi|187757762|gb|ACD32268.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 863 Score = 35.7 bits (81), Expect = 2.3, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 15/87 (17%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL +A ++ EAL Y W + + QE+K + +S+ + V Sbjct: 782 LLIVARTVELLGRRGWEALKY---WWNLL--------QYWSQELKNSAVSLLNATAIAVA 830 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDG 112 + +RI ++ II + +R G Sbjct: 831 EGTDRILEILQRIFRAIIHIPRRIRQG 857 >gi|74273418|gb|ABA01405.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 852 Score = 35.7 bits (81), Expect = 2.3, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL +A ++ EAL Y W +Q + QE+K + IS+ + V Sbjct: 771 LLIVARIVELLGRRGWEALKY----WGNLLQ-------YWSQELKNSAISLFNATAIAVA 819 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI ++ II + +R GL+ Sbjct: 820 EGTDRIIEIAQLIFRAIIHIPRRIRQGLE 848 >gi|295238793|gb|ADF84191.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 857 Score = 35.7 bits (81), Expect = 2.4, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLIS----IGLWVL 85 LL A ++ EAL Y W +Q + QE+K + IS I + V Sbjct: 776 LLIAARIVGLLGRRGWEALKY----WWSLLQ-------YWSQELKNSAISLLNAIAIAVA 824 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI + + I+ + + +R GL+ Sbjct: 825 EGTDRIIEXLQRAGRAILHIPTRIRQGLE 853 >gi|312434202|gb|ADQ74858.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 846 Score = 35.7 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL +A ++ EAL Y W + + QE+K + +S+ + V Sbjct: 765 LLIVARIVELLGRRGWEALKY---WWNLL--------QYWSQELKNSAVSLLNATAIAVA 813 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI ++ II + + +R GL+ Sbjct: 814 EGTDRIIEVLQRIFRAIIHIPTRIRQGLE 842 >gi|190182903|gb|ACE72593.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 868 Score = 35.3 bits (80), Expect = 2.7, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL +A ++ EAL Y W + + QE+K + IS+ + V Sbjct: 787 LLIVARVVELLGRRGWEALKY---WWNLL--------QYWSQEIKNSAISLLNTTAIAVA 835 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI ++ I + + +R GL+ Sbjct: 836 EGTDRIIEAARRIFRAICHIPTRIRQGLE 864 >gi|190182898|gb|ACE72589.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 868 Score = 35.3 bits (80), Expect = 2.7, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL +A ++ EAL Y W + + QE+K + IS+ + V Sbjct: 787 LLIVARVVELLGRRGWEALKY---WWNLL--------QYWSQEIKNSAISLLNTTAIAVA 835 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI ++ I + + +R GL+ Sbjct: 836 EGTDRIIEAARRIFRAICHIPTRIRQGLE 864 >gi|153946622|gb|ABS53250.1| envelope glycoprotein [Human immunodeficiency virus 1] gi|190182839|gb|ACE72542.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 868 Score = 35.3 bits (80), Expect = 2.7, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL +A ++ EAL Y W + + QE+K + IS+ + V Sbjct: 787 LLIVARVVELLGRRGWEALKY---WWNLL--------QYWSQEIKNSAISLLNTTAIAVA 835 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI ++ I + + +R GL+ Sbjct: 836 EGTDRIIEAARRIFRAICHIPTRIRQGLE 864 >gi|297194175|ref|ZP_06911573.1| DNA-cytosine methyltransferase [Streptomyces pristinaespiralis ATCC 25486] gi|297152146|gb|EFH31551.1| DNA-cytosine methyltransferase [Streptomyces pristinaespiralis ATCC 25486] Length = 328 Score = 35.3 bits (80), Expect = 2.7, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 3/58 (5%) Query: 42 KQAVEALFYTSRVWVVFIQDLVS--EDNHLPQEVKLNLISIGLWVLKECERIRRNKSN 97 +QA E L W V +DLV D+H P+ + ++L+S GL +K +RR S Sbjct: 36 RQACETLLANRPHWNVVCEDLVDFLPDDH-PETLDVDLLSAGLPRVKASAAVRRTDSE 92 >gi|219127423|ref|XP_002183935.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217404658|gb|EEC44604.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 521 Score = 35.3 bits (80), Expect = 2.8, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 7/79 (8%) Query: 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSL------PNSKQAVEALFYTSRVW 55 ++Y+ E +++ E L +I L + P SK+ +EA SRV Sbjct: 11 QEYFDEVCLDNAGIFELNEVDALQETIDQLRVQGSLDHLSLTFPTSKEGLEARDERSRV- 69 Query: 56 VVFIQDLVSEDNHLPQEVK 74 + I+DL NHL + ++ Sbjct: 70 LTLIEDLNVSRNHLDKALR 88 >gi|190182884|gb|ACE72578.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 868 Score = 35.3 bits (80), Expect = 2.9, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y W + + QE+K + IS+ + V Sbjct: 787 LLIAARVVELLGRRGWEALKY---WWNLL--------QYWSQEIKNSTISLLNTTAIAVA 835 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI ++ I + + +R GL+ Sbjct: 836 EGTDRIIEVARRIFRAICHIPTRIRQGLE 864 >gi|187760534|gb|ACD34444.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 853 Score = 35.3 bits (80), Expect = 2.9, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 7/85 (8%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECE 89 LL A ++ EA+ Y + + +IQ+L + L L +I + V + + Sbjct: 772 LLIAARIVETLGRRVWEAIKYWWNLLLYWIQELRNSAVGL-------LDTIAIAVAEGTD 824 Query: 90 RIRRNKSNSYQDIIDVISIVRDGLK 114 RI + ++ I+ + + +R GL+ Sbjct: 825 RIIESVRRIFRAILHIPTRIRQGLE 849 >gi|187760505|gb|ACD34421.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 853 Score = 35.3 bits (80), Expect = 2.9, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 7/85 (8%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECE 89 LL A ++ EA+ Y + +IQ+L + L L +I + V + + Sbjct: 772 LLIAARIVETLGRRVWEAIKYWWNLLQYWIQELRNSAVGL-------LDTIAIAVAEGTD 824 Query: 90 RIRRNKSNSYQDIIDVISIVRDGLK 114 RI + ++ I+ + + +R GL+ Sbjct: 825 RIIESVRRIFRAILHIPTRIRQGLE 849 >gi|187760539|gb|ACD34448.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 853 Score = 35.3 bits (80), Expect = 3.0, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 7/85 (8%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECE 89 LL A ++ EA+ Y + +IQ+L + L L +I + V + + Sbjct: 772 LLIAARIVETLGRRVWEAIKYWWNLLQYWIQELRNSAVGL-------LDTIAIAVAEGTD 824 Query: 90 RIRRNKSNSYQDIIDVISIVRDGLK 114 RI + ++ I+ + + +R GL+ Sbjct: 825 RIIESVRRIFRAILHIPTRIRQGLE 849 >gi|295239044|gb|ADF84314.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 867 Score = 35.3 bits (80), Expect = 3.0, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 39/89 (43%), Gaps = 15/89 (16%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL +A ++ E L Y W + + QE+K + +S+ + V Sbjct: 786 LLIVARTVELLGRRGWETLKY---WWNLL--------QYWSQELKNSAVSLLNATAIAVG 834 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGLK 114 + +RI +++ II++ + +R GL+ Sbjct: 835 EGTDRIIEVAQRTFRAIINIPTRIRQGLE 863 >gi|77164777|ref|YP_343302.1| hybrid signal transduction histidine kinase and diguanylate cyclase/phosphodiesterase [Nitrosococcus oceani ATCC 19707] gi|76883091|gb|ABA57772.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Nitrosococcus oceani ATCC 19707] Length = 1499 Score = 34.9 bits (79), Expect = 3.6, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 46/116 (39%), Gaps = 8/116 (6%) Query: 2 RQYYHETIQESSIECRKRE---HWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVF 58 Q+Y + ++ ++++ E L+++ L + + + A T W Sbjct: 1211 YQFYEKGMETAAVKRLGLEAELRRALEQNELALYYQPQINLGTGEI--ATLETLIRWHHP 1268 Query: 59 IQDLVSEDNHLPQEVKLNLI-SIGLWVLKE-CERIRRNKSNSYQDI-IDVISIVRD 111 L+ +P + LI SIG W+L+E C +++ + I V R+ Sbjct: 1269 EHGLIPPSEFIPLAEETGLIASIGAWILREACTQMQSWLQRGFGPFHIAVNVSGRE 1324 >gi|260776227|ref|ZP_05885122.1| putative virulence-mediating protein VirC [Vibrio coralliilyticus ATCC BAA-450] gi|260607450|gb|EEX33715.1| putative virulence-mediating protein VirC [Vibrio coralliilyticus ATCC BAA-450] Length = 634 Score = 34.9 bits (79), Expect = 3.9, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 50/118 (42%), Gaps = 18/118 (15%) Query: 4 YYHETIQESSIECR-KREHWILDRSISLLSIA---HKSLPNSKQAVEALFYT-------- 51 +Y +T + + + E + R I LL ++ S++ E LF T Sbjct: 391 FYRQTYDDEILSEKNALERQLNKREIELLEAQNELQQTKLRSQRTREILFITLFFALAYL 450 Query: 52 --SRVWVV--FIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDV 105 R+W + ++L S++ P N I W L + + ++++KS + +ID+ Sbjct: 451 VIRRLWKMKRITKELESQNTTDPLTGLANRRYIENW-LSQSDNVQQHKSYAL-SVIDI 506 >gi|148546196|ref|YP_001266298.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida F1] gi|148510254|gb|ABQ77114.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida F1] Length = 694 Score = 34.5 bits (78), Expect = 5.0, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 41/108 (37%), Gaps = 11/108 (10%) Query: 2 RQYYHETIQESSIECRKRE---HWILDRSISLLSIAHKSLPNSKQ--AVEALFYTSRVWV 56 Q+Y ++ R+ E L R+ L + + VEAL W Sbjct: 419 YQFYIASVDSEMRRRRELEKDLREALPRNQLYLVYQPQISYRDHRVVGVEALLR----WQ 474 Query: 57 VFIQDLVSEDNHLPQ-EVKLNLISIGLWVLKECER-IRRNKSNSYQDI 102 +V D +P E ++ISIG WVL + R +R + D+ Sbjct: 475 HPELGMVPPDQFIPLAEQNGSIISIGEWVLDQACRQLREWHDQGFSDL 522 >gi|26987650|ref|NP_743075.1| GGDEF domain-containing protein [Pseudomonas putida KT2440] gi|24982332|gb|AAN66539.1|AE016282_7 GGDEF domain protein [Pseudomonas putida KT2440] Length = 693 Score = 34.5 bits (78), Expect = 5.3, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 11/108 (10%) Query: 2 RQYYHETIQESSIECRKRE---HWILDRSISLLSIAHKSLPNSKQ--AVEALFYTSRVWV 56 Q+Y ++ R+ E L R+ L + + VEAL W Sbjct: 418 YQFYIASVDSEMRRRRELEKDLREALPRNQLYLVYQPQISYRDHRVVGVEALLR----WQ 473 Query: 57 VFIQDLVSEDNHLPQ-EVKLNLISIGLWVLKE-CERIRRNKSNSYQDI 102 +V D +P E ++ISIG WVL + C ++R + D+ Sbjct: 474 HPELGMVPPDQFIPLAEQNGSIISIGEWVLDQACRQLREWHDQGFSDL 521 >gi|167035467|ref|YP_001670698.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida GB-1] gi|166861955|gb|ABZ00363.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida GB-1] Length = 683 Score = 34.5 bits (78), Expect = 5.4, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 11/108 (10%) Query: 2 RQYYHETIQESSIECRKRE---HWILDRSISLLSIAHKSLPNSKQ--AVEALFYTSRVWV 56 Q+Y ++ R+ E L R+ L + + VEAL W Sbjct: 408 YQFYIASVDSEMRRRRELEKDLREALPRNQLYLVYQPQISYRDHRVVGVEALLR----WQ 463 Query: 57 VFIQDLVSEDNHLPQ-EVKLNLISIGLWVLKE-CERIRRNKSNSYQDI 102 +V D +P E ++ISIG WVL + C ++R + D+ Sbjct: 464 HPELGMVPPDQFIPLAEQNGSIISIGEWVLDQACRQLREWHDQGFSDL 511 >gi|46200769|ref|ZP_00056465.2| hypothetical protein Magn03011167 [Magnetospirillum magnetotacticum MS-1] Length = 114 Score = 34.5 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 42/101 (41%), Gaps = 8/101 (7%) Query: 17 RKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLN 76 + E + +++ ++ A AL + ++WV + ++ LP VK N Sbjct: 11 KIGEQDAFGLVEAAITLDQSRGDKARLAA-ALDHNLQLWVAIRTLVTDTNSGLPDAVKTN 69 Query: 77 LISIGLWV----LKECERIRRNKSNSYQDIIDVISIVRDGL 113 L + +V LK+ I N+ +++V + +GL Sbjct: 70 LTRLSDFVADTTLKKGVDI---SDNTITTLVNVNLQISEGL 107 >gi|313497283|gb|ADR58649.1| Diguanylate cyclase/phosphodiesterase [Pseudomonas putida BIRD-1] Length = 683 Score = 34.1 bits (77), Expect = 5.8, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 11/108 (10%) Query: 2 RQYYHETIQESSIECRKRE---HWILDRSISLLSIAHKSLPNSKQ--AVEALFYTSRVWV 56 Q+Y ++ R+ E L R+ L + + VEAL W Sbjct: 408 YQFYIASVDSEMRRRRELEKDLREALPRNQLYLVYQPQISYRDHRVVGVEALLR----WQ 463 Query: 57 VFIQDLVSEDNHLPQ-EVKLNLISIGLWVLKE-CERIRRNKSNSYQDI 102 +V D +P E ++ISIG WVL + C ++R + D+ Sbjct: 464 HPELGMVPPDQFIPLAEQNGSIISIGEWVLDQACRQLREWHDQGFSDL 511 >gi|90420690|ref|ZP_01228596.1| putative sensory box/response regulator [Aurantimonas manganoxydans SI85-9A1] gi|90334981|gb|EAS48742.1| putative sensory box/response regulator [Aurantimonas manganoxydans SI85-9A1] Length = 766 Score = 34.1 bits (77), Expect = 5.9, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 47/132 (35%), Gaps = 26/132 (19%) Query: 2 RQYYHETIQESSIECRKR--------EHWILDRSISLLSIAHKSLPNSKQAVEALFYTSR 53 ++Y + E ECR E L A + + + E L Sbjct: 493 FRFYEAQMDEQIEECRALTGELRGALERREFILHFQPLVSARAA---TIEGFEVLLR--- 546 Query: 54 VWVVFIQDLVSEDNHLPQ-EVKLNLISIGLWVLKECERIRRNKSNSYQDII--------- 103 W + LV D +P E +I +G WV++E RI + + Sbjct: 547 -WQHPTRGLVPPDEFIPLAEQSGAIIPLGQWVIREACRIAAAWPSKLTVAVNLSPIQFRH 605 Query: 104 -DVISIVRDGLK 114 DV++IVRD L+ Sbjct: 606 SDVVAIVRDALQ 617 >gi|298290785|ref|YP_003692724.1| resolvase [Starkeya novella DSM 506] gi|296927296|gb|ADH88105.1| Resolvase domain protein [Starkeya novella DSM 506] Length = 575 Score = 34.1 bits (77), Expect = 6.7, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 34/72 (47%), Gaps = 3/72 (4%) Query: 22 WILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIG 81 + R + LS A + +A++A+ ++ + ++ + + ++++I Sbjct: 471 ELYRRKVERLSEALDHPEDRYEAIDAI---RQLVTRVVLTPGAKRGEVHAVLHGDIVAIA 527 Query: 82 LWVLKECERIRR 93 WVLKE ER R+ Sbjct: 528 DWVLKETERPRK 539 >gi|171854883|dbj|BAG16625.1| cyclase/phosphodiesterase homolog [Azotobacter vinelandii] Length = 627 Score = 34.1 bits (77), Expect = 7.0, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 11/108 (10%) Query: 2 RQYYHETIQESSIECRKRE---HWILDRS-ISLLSIAHKSLPNSK-QAVEALFYTSRVWV 56 Q+Y ++ R+ E H L R + LL + N + + VEAL W Sbjct: 350 YQFYIASVDREMRHRRELEKDLHEALARGELQLLYQPQLNYRNQRVEGVEALLR----WR 405 Query: 57 VFIQDLVSEDN-HLPQEVKLNLISIGLWVLKE-CERIRRNKSNSYQDI 102 LV D L E ++I IG WVL++ C ++R + ++ Sbjct: 406 HPRHGLVPPDQFVLLAEHSGSIIPIGEWVLEQACRQLREWHDQGFCEL 453 >gi|226945829|ref|YP_002800902.1| GGDEF domain-containing protein [Azotobacter vinelandii DJ] gi|226720756|gb|ACO79927.1| GGDEF domain-containing protein [Azotobacter vinelandii DJ] Length = 691 Score = 33.7 bits (76), Expect = 7.8, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 11/108 (10%) Query: 2 RQYYHETIQESSIECRKRE---HWILDRS-ISLLSIAHKSLPNSK-QAVEALFYTSRVWV 56 Q+Y ++ R+ E H L R + LL + N + + VEAL W Sbjct: 414 YQFYIASVDREMRHRRELEKDLHEALARGELQLLYQPQLNYRNQRVEGVEALLR----WR 469 Query: 57 VFIQDLVSEDN-HLPQEVKLNLISIGLWVLKECER-IRRNKSNSYQDI 102 LV D L E ++I IG WVL++ R +R + ++ Sbjct: 470 HPRHGLVPPDQFVLLAEHSGSIIPIGEWVLEQACRQLREWHDQGFCEL 517 >gi|328767572|gb|EGF77621.1| hypothetical protein BATDEDRAFT_13838 [Batrachochytrium dendrobatidis JAM81] Length = 751 Score = 33.7 bits (76), Expect = 8.0, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 41/105 (39%), Gaps = 17/105 (16%) Query: 6 HETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI------ 59 + +++ + R+ + +LDR L I + ++AV ++W + Sbjct: 462 AQELEDRARMQRELQRELLDRDEMNLQIEEEFSNLQEEAVSKTRKLKKLWNMMQQQKSEL 521 Query: 60 -----------QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRR 93 +DL+ L +E+KL + IG +V E + I Sbjct: 522 KDVQEEHQREREDLLETIRELTRELKLRNLVIGGFVPVEEQTIIE 566 >gi|104780333|ref|YP_606831.1| diguanylate cyclase/phosphodiesterase [Pseudomonas entomophila L48] gi|95109320|emb|CAK14020.1| putative diguanylate cyclase/phosphodiesterase (GGDEF and EAL domain) [Pseudomonas entomophila L48] Length = 683 Score = 33.7 bits (76), Expect = 9.2, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 11/108 (10%) Query: 2 RQYYHETIQESSIECRKRE---HWILDRSISLLSIAHKSLPNSKQ--AVEALFYTSRVWV 56 Q+Y ++ R+ E L R+ L + + VEAL W Sbjct: 408 YQFYIASVDSEMRRRRELEKDLREALPRNQLYLVYQPQISYRDHRVVGVEALLR----WQ 463 Query: 57 VFIQDLVSEDNHLPQ-EVKLNLISIGLWVLKE-CERIRRNKSNSYQDI 102 +V D +P E N+ISIG WVL + C ++R + ++ Sbjct: 464 HPELGMVPPDQFIPLAEQNGNIISIGEWVLDQACRQLREWHDLGFGEL 511 >gi|107100049|ref|ZP_01363967.1| hypothetical protein PaerPA_01001070 [Pseudomonas aeruginosa PACS2] Length = 699 Score = 33.7 bits (76), Expect = 9.2, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 40/108 (37%), Gaps = 11/108 (10%) Query: 2 RQYYHETIQESSIECRKRE---HWILDRSISLLSIAHKSLPNSKQ--AVEALFYTSRVWV 56 Q+Y ++ R+ E L R L + + VEAL W Sbjct: 420 YQFYIASVDSEMRRRRELEKDLRDALQRHELHLVYQPQVDYRDHRVVGVEALLR----WQ 475 Query: 57 VFIQDLVSEDNHLPQ-EVKLNLISIGLWVLKE-CERIRRNKSNSYQDI 102 + V D +P E ++ SIG WVL + C ++R + D+ Sbjct: 476 HPLHGFVPPDLFIPLAEQNGSIFSIGEWVLDQACRQLREWHDQGFDDL 523 >gi|254244823|ref|ZP_04938145.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|126198201|gb|EAZ62264.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] Length = 687 Score = 33.7 bits (76), Expect = 9.6, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 40/108 (37%), Gaps = 11/108 (10%) Query: 2 RQYYHETIQESSIECRKRE---HWILDRSISLLSIAHKSLPNSKQ--AVEALFYTSRVWV 56 Q+Y ++ R+ E L R L + + VEAL W Sbjct: 408 YQFYIASVDSEMRRRRELEKDLRDALQRHELHLVYQPQVDYRDHRVVGVEALLR----WQ 463 Query: 57 VFIQDLVSEDNHLPQ-EVKLNLISIGLWVLKE-CERIRRNKSNSYQDI 102 + V D +P E ++ SIG WVL + C ++R + D+ Sbjct: 464 HPLHGFVPPDLFIPLAEQNGSIFSIGEWVLDQACRQLREWHDQGFDDL 511 >gi|152985064|ref|YP_001350274.1| putative lipoprotein [Pseudomonas aeruginosa PA7] gi|150960222|gb|ABR82247.1| lipoprotein, putative [Pseudomonas aeruginosa PA7] Length = 686 Score = 33.4 bits (75), Expect = 9.8, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 40/108 (37%), Gaps = 11/108 (10%) Query: 2 RQYYHETIQESSIECRKRE---HWILDRSISLLSIAHKSLPNSKQ--AVEALFYTSRVWV 56 Q+Y ++ R+ E L R L + + VEAL W Sbjct: 408 YQFYIASVDSEMRRRRELEKDLRDALQRHELHLVYQPQVDYRDHRVVGVEALLR----WQ 463 Query: 57 VFIQDLVSEDNHLPQ-EVKLNLISIGLWVLKE-CERIRRNKSNSYQDI 102 + V D +P E ++ SIG WVL + C ++R + D+ Sbjct: 464 HPLHGFVPPDLFIPLAEQNGSIFSIGEWVLDQACRQLREWHDQGFDDL 511 >gi|15599563|ref|NP_253057.1| BifA [Pseudomonas aeruginosa PAO1] gi|116052401|ref|YP_792712.1| GGDEF domain/EAL domain-containing protein [Pseudomonas aeruginosa UCBPP-PA14] gi|218893458|ref|YP_002442327.1| putative GGDEF domain/EAL domain protein [Pseudomonas aeruginosa LESB58] gi|254238970|ref|ZP_04932293.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|296391074|ref|ZP_06880549.1| putative GGDEF domain/EAL domain protein [Pseudomonas aeruginosa PAb1] gi|313106896|ref|ZP_07793100.1| putative GGDEF domain-containing/EAL domain-containing protein [Pseudomonas aeruginosa 39016] gi|9950595|gb|AAG07755.1|AE004852_8 BifA [Pseudomonas aeruginosa PAO1] gi|115587622|gb|ABJ13637.1| putative GGDEF domain/EAL domain protein [Pseudomonas aeruginosa UCBPP-PA14] gi|126170901|gb|EAZ56412.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|218773686|emb|CAW29500.1| putative GGDEF domain/EAL domain protein [Pseudomonas aeruginosa LESB58] gi|310879602|gb|EFQ38196.1| putative GGDEF domain-containing/EAL domain-containing protein [Pseudomonas aeruginosa 39016] Length = 687 Score = 33.4 bits (75), Expect = 9.8, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 40/108 (37%), Gaps = 11/108 (10%) Query: 2 RQYYHETIQESSIECRKRE---HWILDRSISLLSIAHKSLPNSKQ--AVEALFYTSRVWV 56 Q+Y ++ R+ E L R L + + VEAL W Sbjct: 408 YQFYIASVDSEMRRRRELEKDLRDALQRHELHLVYQPQVDYRDHRVVGVEALLR----WQ 463 Query: 57 VFIQDLVSEDNHLPQ-EVKLNLISIGLWVLKE-CERIRRNKSNSYQDI 102 + V D +P E ++ SIG WVL + C ++R + D+ Sbjct: 464 HPLHGFVPPDLFIPLAEQNGSIFSIGEWVLDQACRQLREWHDQGFDDL 511 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.307 0.148 0.424 Lambda K H 0.267 0.0464 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,247,750,209 Number of Sequences: 14124377 Number of extensions: 82385713 Number of successful extensions: 236842 Number of sequences better than 10.0: 331 Number of HSP's better than 10.0 without gapping: 263 Number of HSP's successfully gapped in prelim test: 184 Number of HSP's that attempted gapping in prelim test: 236446 Number of HSP's gapped (non-prelim): 451 length of query: 114 length of database: 4,842,793,630 effective HSP length: 81 effective length of query: 33 effective length of database: 3,698,719,093 effective search space: 122057730069 effective search space used: 122057730069 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.9 bits) S2: 76 (33.7 bits)