BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780522|ref|YP_003064935.1| flagellar biosynthesis
regulatory protein FlaF [Candidatus Liberibacter asiaticus str. psy62]
         (114 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780522|ref|YP_003064935.1| flagellar biosynthesis regulatory protein FlaF [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254040199|gb|ACT56995.1| flagellar biosynthesis regulatory protein FlaF [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 114

 Score =  231 bits (588), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 114/114 (100%), Positives = 114/114 (100%)

Query: 1   MRQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQ 60
           MRQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQ
Sbjct: 1   MRQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQ 60

Query: 61  DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK
Sbjct: 61  DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114


>gi|315122287|ref|YP_004062776.1| flagellar biosynthesis regulatory protein FlaF [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313495689|gb|ADR52288.1| flagellar biosynthesis regulatory protein FlaF [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 114

 Score =  181 bits (460), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 86/114 (75%), Positives = 102/114 (89%)

Query: 1   MRQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQ 60
           MRQYY+E +QESS+E RKRE WIL++SISLLS A +S PNS++ VEAL+YT+RVWVVFIQ
Sbjct: 1   MRQYYNEIVQESSVESRKREFWILNKSISLLSSAQQSKPNSREVVEALYYTNRVWVVFIQ 60

Query: 61  DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           DLVSE N L +EVKLNLISIGLW+L+ECERIRRN+SN+YQ IIDV S+VRDGLK
Sbjct: 61  DLVSESNQLTEEVKLNLISIGLWILEECERIRRNESNNYQAIIDVTSVVRDGLK 114


>gi|222084888|ref|YP_002543417.1| flagellin synthesis regulator protein [Agrobacterium radiobacter
           K84]
 gi|221722336|gb|ACM25492.1| flagellin synthesis regulator protein [Agrobacterium radiobacter
           K84]
          Length = 115

 Score =  130 bits (328), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 63/115 (54%), Positives = 85/115 (73%), Gaps = 1/115 (0%)

Query: 1   MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M Q+ Y E +Q++  + ++RE  +LDRSI+LL+ A       ++A+EALFYT RVWV FI
Sbjct: 1   MYQFSYAEVMQDAVADAKERERQVLDRSITLLAAARDKEKYGREAIEALFYTRRVWVSFI 60

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +DL S DN L  E++ NLISI LW+LKEC+RIRR +S +YQ IIDV +I+RDGLK
Sbjct: 61  EDLKSPDNQLNVELRANLISIALWILKECDRIRRRQSENYQGIIDVTTIIRDGLK 115


>gi|116250503|ref|YP_766341.1| flagellar biosynthesis regulatory protein FlaF [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115255151|emb|CAK06225.1| putative flagellar synthesis related protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 115

 Score =  128 bits (321), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 62/115 (53%), Positives = 86/115 (74%), Gaps = 1/115 (0%)

Query: 1   MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M Q+ Y E +Q+S  + ++RE  +LDRSI LLS+A +     ++A+EALFYT RVW+ FI
Sbjct: 1   MYQFSYAEVMQDSVADAKEREWQVLDRSIDLLSLAREKEKYGREAIEALFYTRRVWISFI 60

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +DL   DN L  E++ NLISI +W+LKEC+RIR+ +SN+YQ IIDV +I+RDGLK
Sbjct: 61  EDLKHPDNQLEIELRANLISIAIWILKECDRIRKRQSNNYQGIIDVTTIIRDGLK 115


>gi|209547949|ref|YP_002279866.1| flagellar biosynthesis regulatory protein FlaF [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209533705|gb|ACI53640.1| flagellar FlaF family protein [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 115

 Score =  126 bits (317), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 62/115 (53%), Positives = 85/115 (73%), Gaps = 1/115 (0%)

Query: 1   MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M Q+ Y E +Q+S  + ++RE  +LDRSI LLS+A +     ++A+EALFYT RVW+ FI
Sbjct: 1   MYQFSYAEVMQDSVADAKEREWQVLDRSIDLLSLAREKEKYGREAIEALFYTRRVWISFI 60

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +DL   DN L  E++ NLISI +W+LKEC+RIR+  SN+YQ IIDV +I+RDGLK
Sbjct: 61  EDLKHPDNQLEIELRANLISIAIWILKECDRIRKRLSNNYQGIIDVTTIIRDGLK 115


>gi|86356333|ref|YP_468225.1| flagellar biosynthesis regulatory protein FlaF [Rhizobium etli CFN
           42]
 gi|218671598|ref|ZP_03521268.1| flagellar biosynthesis regulatory protein FlaF [Rhizobium etli
           GR56]
 gi|86280435|gb|ABC89498.1| flagellin synthesis regulator protein [Rhizobium etli CFN 42]
          Length = 115

 Score =  125 bits (313), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 61/115 (53%), Positives = 84/115 (73%), Gaps = 1/115 (0%)

Query: 1   MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M Q+ Y E +Q+S  + ++RE  +LDRSI LLS+A       ++A+EALFYT RVW+ FI
Sbjct: 1   MYQFSYAEVMQDSVADAKEREWQVLDRSIELLSLARDKEKYGREAIEALFYTRRVWISFI 60

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +DL   DN L  +++ NLISI +W+LKEC+RIR+  SN+YQ IIDV +I+RDGLK
Sbjct: 61  EDLKHPDNQLDVQLRANLISIAIWILKECDRIRKRLSNNYQGIIDVTTIIRDGLK 115


>gi|222147592|ref|YP_002548549.1| flagellar biosynthesis regulatory protein FlaF [Agrobacterium vitis
           S4]
 gi|221734580|gb|ACM35543.1| FLAF protein [Agrobacterium vitis S4]
          Length = 115

 Score =  124 bits (312), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 58/115 (50%), Positives = 84/115 (73%), Gaps = 1/115 (0%)

Query: 1   MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M Q+ Y+E +++   + ++RE  +LDRSI LLS A  +    ++ +EAL+YT RVW+ FI
Sbjct: 1   MYQFSYNEIMEDGVADAKERERQVLDRSIDLLSQAKTAGKYGREGIEALYYTRRVWIRFI 60

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +DL   DN L  E++ NLISI LW+LKEC+RIR+ +S++YQ IIDV +I+RDGLK
Sbjct: 61  EDLKQPDNQLGTELRANLISIALWILKECDRIRKRESDNYQGIIDVTTIIRDGLK 115


>gi|218462422|ref|ZP_03502513.1| flagellar biosynthesis regulatory protein FlaF [Rhizobium etli Kim
           5]
          Length = 115

 Score =  124 bits (311), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 60/115 (52%), Positives = 84/115 (73%), Gaps = 1/115 (0%)

Query: 1   MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M Q+ Y E +Q+S  + ++RE  +LDRSI LL++A       ++A+EALFYT RVW+ FI
Sbjct: 1   MYQFSYAEVMQDSVADAKEREWQVLDRSIELLALARDKEKYGREAIEALFYTRRVWISFI 60

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +DL   DN L  +++ NLISI +W+LKEC+RIR+  SN+YQ IIDV +I+RDGLK
Sbjct: 61  EDLKHPDNQLDVQLRANLISIAIWILKECDRIRKRLSNNYQGIIDVTTIIRDGLK 115


>gi|241203127|ref|YP_002974223.1| flagellar biosynthesis regulatory protein FlaF [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240857017|gb|ACS54684.1| flagellar FlaF family protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 115

 Score =  124 bits (311), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 60/115 (52%), Positives = 84/115 (73%), Gaps = 1/115 (0%)

Query: 1   MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M Q+ Y E +Q+S  + ++RE  +LDRSI LL+ A +     ++A+EALFYT RVW+ FI
Sbjct: 1   MYQFSYAEVMQDSVADAKEREWQVLDRSIDLLAAAREKEKYGREAIEALFYTRRVWISFI 60

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +DL   DN L   ++ NLISI +W+LKEC+RIR+ +SN+YQ IIDV +I+RDGLK
Sbjct: 61  EDLKHPDNQLEIGLRANLISIAIWILKECDRIRKRQSNNYQGIIDVTTIIRDGLK 115


>gi|190890385|ref|YP_001976927.1| flagellin synthesis regulator protein [Rhizobium etli CIAT 652]
 gi|190695664|gb|ACE89749.1| flagellin synthesis regulator protein [Rhizobium etli CIAT 652]
 gi|327193062|gb|EGE59974.1| flagellin synthesis regulator protein [Rhizobium etli CNPAF512]
          Length = 115

 Score =  124 bits (310), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 60/115 (52%), Positives = 84/115 (73%), Gaps = 1/115 (0%)

Query: 1   MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M Q+ Y E +Q+S  + ++RE  +LDRSI LL++A       ++A+EALFYT RVW+ FI
Sbjct: 1   MYQFSYAEVMQDSVADAKEREWQVLDRSIELLALARDKDKYGREAIEALFYTRRVWISFI 60

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +DL   DN L  +++ NLISI +W+LKEC+RIR+  SN+YQ IIDV +I+RDGLK
Sbjct: 61  EDLKHPDNQLDVQLRANLISIAIWILKECDRIRKRLSNNYQGIIDVTTIIRDGLK 115


>gi|13472595|ref|NP_104162.1| flagellar biosynthesis regulatory protein FlaF [Mesorhizobium loti
           MAFF303099]
 gi|14023341|dbj|BAB49948.1| flagellar protein; FlaF [Mesorhizobium loti MAFF303099]
          Length = 115

 Score =  115 bits (289), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/115 (44%), Positives = 85/115 (73%), Gaps = 1/115 (0%)

Query: 1   MRQYYHETIQESSI-ECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M Q+ +  +Q +S+ + + RE  +L RSI +LS A  +  +S +A+EAL +T+RVW +F+
Sbjct: 1   MYQFSYADVQSTSVSDAKDRERELLTRSIDMLSAAAAAGQDSMEAIEALNFTNRVWTIFV 60

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +DL S DN LP+E++ NLISIGLW+L+E E IR+ ++N+++ +I+V  I+RDG++
Sbjct: 61  EDLGSSDNALPKELRANLISIGLWLLREAEDIRQGRTNNFEGLIEVSQIIRDGIQ 115


>gi|260466600|ref|ZP_05812788.1| flagellar FlaF family protein [Mesorhizobium opportunistum WSM2075]
 gi|259029606|gb|EEW30894.1| flagellar FlaF family protein [Mesorhizobium opportunistum WSM2075]
          Length = 115

 Score =  114 bits (285), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 51/115 (44%), Positives = 84/115 (73%), Gaps = 1/115 (0%)

Query: 1   MRQYYHETIQESSI-ECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M Q+ +  +Q +S+ + + RE  +L RSI +LS A  +  +S +AVEAL +T+RVW  F+
Sbjct: 1   MYQFSYADVQSTSVSDAKDRERELLTRSIDMLSAAAAAGQDSMEAVEALHFTNRVWTTFV 60

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +DL S DN LP+E++ NLISIGLW+L+E E IR+ ++++++ +I+V  I+RDG++
Sbjct: 61  EDLGSSDNALPKELRANLISIGLWLLREAEDIRQGRTDNFEGLIEVSQIIRDGIQ 115


>gi|319781662|ref|YP_004141138.1| flagellar FlaF family protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317167550|gb|ADV11088.1| flagellar FlaF family protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 115

 Score =  112 bits (280), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 51/115 (44%), Positives = 83/115 (72%), Gaps = 1/115 (0%)

Query: 1   MRQYYHETIQESSI-ECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M Q+ +  IQ +S+ + + RE  +L RSI +L+ A  +   S +A+EAL +T+RVW  F+
Sbjct: 1   MYQFSYADIQSNSVADAKDRERELLTRSIDMLAAAAVAGHGSMEAIEALHFTNRVWTAFV 60

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +DL S DN LP+E++ NLISIGLW+L+E E IR+ ++N+++ +I+V  I+RDG++
Sbjct: 61  EDLGSSDNALPKELRANLISIGLWLLREAEDIRQGRTNNFEGLIEVSQIIRDGIQ 115


>gi|114706625|ref|ZP_01439526.1| flagellar protein flaF [Fulvimarina pelagi HTCC2506]
 gi|114538017|gb|EAU41140.1| flagellar protein flaF [Fulvimarina pelagi HTCC2506]
          Length = 115

 Score =  110 bits (276), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 49/114 (42%), Positives = 78/114 (68%), Gaps = 1/114 (0%)

Query: 1   MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M Q+ Y E  Q+++++ R+RE    D SI+LL  A KS P S+ A+EA++ T  +W + +
Sbjct: 1   MYQFSYAEVAQDTAVDARERERQAFDHSIALLEKAEKSGPRSRDAIEAIYITRSLWSILV 60

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
           +DL S DN LP+E++  LISIGLW++ E E IR  KS +++ I+++  ++RDGL
Sbjct: 61  EDLGSADNGLPEELRAELISIGLWIMSEAEAIRVGKSTNFKGIVEITRLIRDGL 114


>gi|15887922|ref|NP_353603.1| flagellar biosynthesis regulatory protein FlaF [Agrobacterium
           tumefaciens str. C58]
 gi|15155518|gb|AAK86388.1| FLAF protein [Agrobacterium tumefaciens str. C58]
          Length = 114

 Score =  108 bits (270), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/115 (47%), Positives = 77/115 (66%), Gaps = 2/115 (1%)

Query: 1   MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M Q+ Y E +++     + RE   L +SI LL  A  S  + + ++EALFYT RVW+ FI
Sbjct: 1   MYQFSYAEIMEDGVANAKDRERQALTKSIDLLVEARDS-SSQRHSIEALFYTRRVWIRFI 59

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +DL   DN L  E++ NLISI +W+LKECE IR+ +S ++Q IIDV +I+RDGLK
Sbjct: 60  EDLKQPDNQLAMELRANLISIAIWILKECELIRKRQSTNFQGIIDVTTIIRDGLK 114


>gi|110632637|ref|YP_672845.1| flagellar biosynthesis regulatory protein FlaF [Mesorhizobium sp.
           BNC1]
 gi|110283621|gb|ABG61680.1| flagellar FlaF [Chelativorans sp. BNC1]
          Length = 115

 Score =  107 bits (268), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 80/115 (69%), Gaps = 1/115 (0%)

Query: 1   MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M Q+ Y E + +S  + + RE  +L RSI LL+ A ++ P S++A+EA+ + +RVW   +
Sbjct: 1   MYQFSYSEVLSDSVADAKDRERQLLTRSIDLLTQAREAGPRSREAIEAILFMNRVWTSLV 60

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +DL    N LP+E++ NLISIGLW+L+E E +R+ +S+++  +I++  I+RDGL+
Sbjct: 61  EDLGDPGNALPKELRANLISIGLWLLREGEEVRQGRSDNFDGLIEISQIIRDGLR 115


>gi|325291965|ref|YP_004277829.1| flagellar biosynthesis regulatory protein FlaF [Agrobacterium sp.
           H13-3]
 gi|325059818|gb|ADY63509.1| flagellar biosynthesis regulatory protein FlaF [Agrobacterium sp.
           H13-3]
          Length = 114

 Score =  107 bits (267), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 53/115 (46%), Positives = 77/115 (66%), Gaps = 2/115 (1%)

Query: 1   MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M Q+ Y E +++   + + RE   L +SI LL +  K   + +  +EALFYT RVW+ FI
Sbjct: 1   MYQFSYAEIMEDGVADAKDRERQALTKSIDLL-VEAKDSSSQRHTIEALFYTRRVWIRFI 59

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +DL   +N L  E++ NLISI +W+LKECE IR+ +S ++Q IIDV +I+RDGLK
Sbjct: 60  EDLKQPENQLAMELRANLISIAIWILKECELIRKRQSTNFQGIIDVTTIIRDGLK 114


>gi|239834424|ref|ZP_04682752.1| flagellar biosynthesis regulatory protein FlaF [Ochrobactrum
           intermedium LMG 3301]
 gi|239822487|gb|EEQ94056.1| flagellar biosynthesis regulatory protein FlaF [Ochrobactrum
           intermedium LMG 3301]
          Length = 114

 Score =  104 bits (259), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 75/109 (68%)

Query: 5   YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64
           Y + + +     R+RE  + DRSI++L +A ++   S++ ++A ++T+++W   I DL S
Sbjct: 6   YEDVMTDDMASARERERTLFDRSIAMLELAKENGSGSREGIDATYFTTKLWTTIIDDLGS 65

Query: 65  EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
           E+N LP+E+K  +IS+G++VLKE ERIR+ +SN Y  +I++   +RDGL
Sbjct: 66  EENVLPKELKAAIISVGIFVLKEIERIRQGESNDYATLIEITQSIRDGL 114


>gi|225628426|ref|ZP_03786460.1| Protein flaF [Brucella ceti str. Cudo]
 gi|254706499|ref|ZP_05168327.1| flagellar biosynthesis regulatory protein FlaF [Brucella
           pinnipedialis M163/99/10]
 gi|254711216|ref|ZP_05173027.1| flagellar biosynthesis regulatory protein FlaF [Brucella
           pinnipedialis B2/94]
 gi|254711815|ref|ZP_05173626.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti
           M644/93/1]
 gi|254714884|ref|ZP_05176695.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti
           M13/05/1]
 gi|256030155|ref|ZP_05443769.1| flagellar biosynthesis regulatory protein FlaF [Brucella
           pinnipedialis M292/94/1]
 gi|256158334|ref|ZP_05456238.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti
           M490/95/1]
 gi|256252732|ref|ZP_05458268.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti
           B1/94]
 gi|260166793|ref|ZP_05753604.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. F5/99]
 gi|261216574|ref|ZP_05930855.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti
           M13/05/1]
 gi|261219810|ref|ZP_05934091.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti
           B1/94]
 gi|261313953|ref|ZP_05953150.1| flagellar biosynthesis regulatory protein FlaF [Brucella
           pinnipedialis M163/99/10]
 gi|261318807|ref|ZP_05958004.1| flagellar biosynthesis regulatory protein FlaF [Brucella
           pinnipedialis B2/94]
 gi|261319444|ref|ZP_05958641.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti
           M644/93/1]
 gi|261756170|ref|ZP_05999879.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. F5/99]
 gi|265987186|ref|ZP_06099743.1| flagellar biosynthesis regulatory protein FlaF [Brucella
           pinnipedialis M292/94/1]
 gi|265996849|ref|ZP_06109406.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti
           M490/95/1]
 gi|225616272|gb|EEH13320.1| Protein flaF [Brucella ceti str. Cudo]
 gi|260918394|gb|EEX85047.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti
           B1/94]
 gi|260921663|gb|EEX88231.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti
           M13/05/1]
 gi|261292134|gb|EEX95630.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti
           M644/93/1]
 gi|261298030|gb|EEY01527.1| flagellar biosynthesis regulatory protein FlaF [Brucella
           pinnipedialis B2/94]
 gi|261302979|gb|EEY06476.1| flagellar biosynthesis regulatory protein FlaF [Brucella
           pinnipedialis M163/99/10]
 gi|261736154|gb|EEY24150.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. F5/99]
 gi|262551146|gb|EEZ07307.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti
           M490/95/1]
 gi|264659383|gb|EEZ29644.1| flagellar biosynthesis regulatory protein FlaF [Brucella
           pinnipedialis M292/94/1]
          Length = 114

 Score =  104 bits (259), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 74/109 (67%)

Query: 5   YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64
           Y + + +     ++RE  + DRSI++L +A  +   S++ ++A ++TS++W   I DL S
Sbjct: 6   YEDVMNDDMASAKERERMLFDRSIAMLEVARANGAESREGIDAAYFTSKLWTTIIDDLGS 65

Query: 65  EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
           E+N LP+E++  +ISIG++VLKE ERIR+ +SN Y  +I++   +RDGL
Sbjct: 66  EENALPKELRAAIISIGIFVLKEIERIRQGESNDYATLIEITQSIRDGL 114


>gi|90418362|ref|ZP_01226274.1| flagellar protein FlaF [Aurantimonas manganoxydans SI85-9A1]
 gi|90338034|gb|EAS51685.1| flagellar protein FlaF [Aurantimonas manganoxydans SI85-9A1]
          Length = 115

 Score =  103 bits (258), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 48/115 (41%), Positives = 75/115 (65%), Gaps = 1/115 (0%)

Query: 1   MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M Q+ Y E  Q+  ++ R+RE   LD SI  L  A    P S+ A+EA++ T  +W + I
Sbjct: 1   MYQFSYAEVAQDIEVDARERERQALDHSIEQLKKADAEGPRSRAAIEAIYTTRSLWALVI 60

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +DL S DN LP+ ++  LISIGLW+++E E IR  KS +++ II++ +++R+GLK
Sbjct: 61  EDLASADNGLPEALRAELISIGLWIMREAEAIRLGKSENFKGIIEITTLIREGLK 115


>gi|153011505|ref|YP_001372719.1| flagellar biosynthesis regulatory protein FlaF [Ochrobactrum
           anthropi ATCC 49188]
 gi|151563393|gb|ABS16890.1| flagellar FlaF family protein [Ochrobactrum anthropi ATCC 49188]
          Length = 114

 Score =  103 bits (256), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 74/109 (67%)

Query: 5   YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64
           Y + + +     ++RE  + DRSI++L  A  +   S++A++A ++T+++W   I DL S
Sbjct: 6   YEDVMNDDMASAKERERALFDRSIAMLEAAKANGSGSREAIDAAYFTTKLWTTIIDDLGS 65

Query: 65  EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
           E+N LP+E+K  +IS+G++VLKE ERIR+ +SN Y  +I++   +RDGL
Sbjct: 66  EENVLPKELKAAIISVGIFVLKEIERIRQGESNDYATLIEITQSIRDGL 114


>gi|23500851|ref|NP_700291.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis 1330]
 gi|62317954|ref|YP_223807.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
           bv. 1 str. 9-941]
 gi|83269931|ref|YP_419222.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis
           biovar Abortus 2308]
 gi|148558679|ref|YP_001258001.1| flagellar biosynthesis regulatory protein FlaF [Brucella ovis ATCC
           25840]
 gi|161621179|ref|YP_001595065.1| flagellar biosynthesis regulatory protein FlaF [Brucella canis ATCC
           23365]
 gi|163845454|ref|YP_001623109.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis ATCC
           23445]
 gi|189023205|ref|YP_001932946.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
           S19]
 gi|225686882|ref|YP_002734854.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis
           ATCC 23457]
 gi|237817499|ref|ZP_04596490.1| Protein flaF [Brucella abortus str. 2308 A]
 gi|254691614|ref|ZP_05154868.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
           bv. 6 str. 870]
 gi|254695090|ref|ZP_05156918.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
           bv. 3 str. Tulya]
 gi|254698186|ref|ZP_05160014.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|254699259|ref|ZP_05161087.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis bv. 5
           str. 513]
 gi|254702380|ref|ZP_05164208.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis bv. 3
           str. 686]
 gi|254720776|ref|ZP_05182587.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. 83/13]
 gi|254731631|ref|ZP_05190209.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
           bv. 4 str. 292]
 gi|256015895|ref|YP_003105904.1| flagellar biosynthesis regulatory protein FlaF [Brucella microti
           CCM 4915]
 gi|256059807|ref|ZP_05450002.1| flagellar biosynthesis regulatory protein FlaF [Brucella neotomae
           5K33]
 gi|256112179|ref|ZP_05453100.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis
           bv. 3 str. Ether]
 gi|256256801|ref|ZP_05462337.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
           bv. 9 str. C68]
 gi|256261981|ref|ZP_05464513.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis
           bv. 2 str. 63/9]
 gi|260544139|ref|ZP_05819960.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
           NCTC 8038]
 gi|260568717|ref|ZP_05839186.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis bv. 4
           str. 40]
 gi|260757245|ref|ZP_05869593.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
           bv. 6 str. 870]
 gi|260759390|ref|ZP_05871738.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
           bv. 4 str. 292]
 gi|260762633|ref|ZP_05874965.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260883049|ref|ZP_05894663.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
           bv. 9 str. C68]
 gi|261215441|ref|ZP_05929722.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
           bv. 3 str. Tulya]
 gi|261323787|ref|ZP_05962984.1| flagellar biosynthesis regulatory protein FlaF [Brucella neotomae
           5K33]
 gi|261749699|ref|ZP_05993408.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis bv. 5
           str. 513]
 gi|261752943|ref|ZP_05996652.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis bv. 3
           str. 686]
 gi|265985834|ref|ZP_06098569.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. 83/13]
 gi|265993606|ref|ZP_06106163.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis
           bv. 3 str. Ether]
 gi|294852965|ref|ZP_06793637.1| flagellar protein FlaF [Brucella sp. NVSL 07-0026]
 gi|297250154|ref|ZP_06933855.1| flaF, flagellar biosynthesis regulatory protein FlaF [Brucella
           abortus bv. 5 str. B3196]
 gi|306840133|ref|ZP_07472918.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. NF
           2653]
 gi|306841279|ref|ZP_07473990.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. BO2]
 gi|23464515|gb|AAN34296.1| flagellar protein FlaF, putative [Brucella suis 1330]
 gi|62198147|gb|AAX76446.1| hypothetical FlaF [Brucella abortus bv. 1 str. 9-941]
 gi|82940205|emb|CAJ13261.1| flagellar protein FlaF, putative [Brucella melitensis biovar
           Abortus 2308]
 gi|148369964|gb|ABQ62836.1| putative flagellar protein FlaF [Brucella ovis ATCC 25840]
 gi|161337990|gb|ABX64294.1| flagellar FlaF family protein [Brucella canis ATCC 23365]
 gi|163676177|gb|ABY40287.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
 gi|189021779|gb|ACD74500.1| flagellar protein FlaF, putative [Brucella abortus S19]
 gi|225642987|gb|ACO02900.1| Protein flaF [Brucella melitensis ATCC 23457]
 gi|237787334|gb|EEP61551.1| Protein flaF [Brucella abortus str. 2308 A]
 gi|255998555|gb|ACU50242.1| flagellar biosynthesis regulatory protein FlaF [Brucella microti
           CCM 4915]
 gi|260097410|gb|EEW81284.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
           NCTC 8038]
 gi|260155382|gb|EEW90463.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis bv. 4
           str. 40]
 gi|260669708|gb|EEX56648.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
           bv. 4 str. 292]
 gi|260673054|gb|EEX59875.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260677353|gb|EEX64174.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
           bv. 6 str. 870]
 gi|260872577|gb|EEX79646.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
           bv. 9 str. C68]
 gi|260917048|gb|EEX83909.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
           bv. 3 str. Tulya]
 gi|261299767|gb|EEY03264.1| flagellar biosynthesis regulatory protein FlaF [Brucella neotomae
           5K33]
 gi|261739452|gb|EEY27378.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis bv. 5
           str. 513]
 gi|261742696|gb|EEY30622.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis bv. 3
           str. 686]
 gi|262764476|gb|EEZ10508.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis
           bv. 3 str. Ether]
 gi|263091465|gb|EEZ16001.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis
           bv. 2 str. 63/9]
 gi|264664426|gb|EEZ34687.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. 83/13]
 gi|294818620|gb|EFG35620.1| flagellar protein FlaF [Brucella sp. NVSL 07-0026]
 gi|297174023|gb|EFH33387.1| flaF, flagellar biosynthesis regulatory protein FlaF [Brucella
           abortus bv. 5 str. B3196]
 gi|306288681|gb|EFM60012.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. BO2]
 gi|306404778|gb|EFM61072.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. NF
           2653]
 gi|326411300|gb|ADZ68364.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis
           M28]
 gi|326554589|gb|ADZ89228.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis
           M5-90]
          Length = 114

 Score =  103 bits (256), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 73/109 (66%)

Query: 5   YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64
           Y + + +     ++RE  + DRSI++L  A  +   S++ ++A ++TS++W   I DL S
Sbjct: 6   YEDVMNDDMASAKERERMLFDRSIAMLEAARANGAESREGIDAAYFTSKLWTTIIDDLGS 65

Query: 65  EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
           E+N LP+E++  +ISIG++VLKE ERIR+ +SN Y  +I++   +RDGL
Sbjct: 66  EENALPKELRAAIISIGIFVLKEIERIRQGESNDYATLIEITQSIRDGL 114


>gi|17988506|ref|NP_541139.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis
           bv. 1 str. 16M]
 gi|256042863|ref|ZP_05445809.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|260564100|ref|ZP_05834585.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis
           bv. 1 str. 16M]
 gi|265989298|ref|ZP_06101855.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|17984298|gb|AAL53403.1| flaf protein [Brucella melitensis bv. 1 str. 16M]
 gi|260151743|gb|EEW86836.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis
           bv. 1 str. 16M]
 gi|262999967|gb|EEZ12657.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis
           bv. 1 str. Rev.1]
          Length = 114

 Score =  102 bits (254), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 42/109 (38%), Positives = 73/109 (66%)

Query: 5   YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64
           Y + + +     ++RE  + DR+I++L  A  +   S++ ++A ++TS++W   I DL S
Sbjct: 6   YEDVMNDDMASAKERERMLFDRTIAMLEAARANGAESREGIDAAYFTSKLWTTIIDDLGS 65

Query: 65  EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
           E+N LP+E++  +ISIG++VLKE ERIR+ +SN Y  +I++   +RDGL
Sbjct: 66  EENALPKELRAAIISIGIFVLKEIERIRQGESNDYATLIEITQSIRDGL 114


>gi|306845416|ref|ZP_07477990.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. BO1]
 gi|306274159|gb|EFM55975.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. BO1]
          Length = 114

 Score =  101 bits (251), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 42/109 (38%), Positives = 73/109 (66%)

Query: 5   YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64
           Y + + +     ++RE  + DRSI++L  A  +   S++ ++A ++TS++W   I DL S
Sbjct: 6   YEDVMNDDMASAKERERMLFDRSIAMLEAARANGAESREGIDAAYFTSKLWTTIIDDLGS 65

Query: 65  EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
           E+N LP+E++  +ISIG++VLKE ERIR+ +SN Y  +I++   ++DGL
Sbjct: 66  EENALPKELRAAIISIGIFVLKEIERIRQGESNDYATLIEITQSIQDGL 114


>gi|300024585|ref|YP_003757196.1| flagellar FlaF family protein [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299526406|gb|ADJ24875.1| flagellar FlaF family protein [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 114

 Score = 97.8 bits (242), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 75/109 (68%)

Query: 5   YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64
           Y ET+ +S+   R+ E   +++S+S+L  A K+  NS++AV+A+ + +R+W   ++DLV 
Sbjct: 6   YEETLSDSAGRKRENERLAIEQSVSMLRSAEKAGANSREAVDAICFLNRLWSFLLEDLVK 65

Query: 65  EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
            +N LP +++ NLISIG+W+LKE + I   KS ++  +IDV S++ +GL
Sbjct: 66  PENALPDDIRANLISIGIWMLKEADAISSGKSKNFAGLIDVSSVIAEGL 114


>gi|227820878|ref|YP_002824848.1| flagellar biosynthesis regulatory protein FlaF [Sinorhizobium
           fredii NGR234]
 gi|227339877|gb|ACP24095.1| predicted flagellar protein FlaF [Sinorhizobium fredii NGR234]
          Length = 115

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/115 (46%), Positives = 80/115 (69%), Gaps = 1/115 (0%)

Query: 1   MRQYYHETIQESSIECRKREHW-ILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M Q+ +  I E  +   K   W +L+RSI+LL  A +    S++A+EA++YT RVW+ FI
Sbjct: 1   MYQFAYAEIMEEGVAVSKDREWQVLNRSIALLEAAKQQKGYSREAIEAIYYTRRVWIRFI 60

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +DL + DN L  E++ NLISIG+W+L E E+IR+  S+++Q IID+ +I+RDGLK
Sbjct: 61  EDLRAPDNQLNDELRANLISIGIWILNETEKIRKRDSSNFQGIIDITTIIRDGLK 115


>gi|150395506|ref|YP_001325973.1| flagellar biosynthesis regulatory protein FlaF [Sinorhizobium
           medicae WSM419]
 gi|150027021|gb|ABR59138.1| flagellar FlaF family protein [Sinorhizobium medicae WSM419]
          Length = 115

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 52/115 (45%), Positives = 84/115 (73%), Gaps = 1/115 (0%)

Query: 1   MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M Q+ Y E ++E     + RE  +LDRSI+LL  A +    +++A+EA+++T R+W+ FI
Sbjct: 1   MYQFAYAEIMEEGVAVSKDREKQVLDRSIALLQAAKEKNGYTREAIEAVYFTRRLWIRFI 60

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +DL + DN L +E++ NLISIG+W+L E E+IR+ +S+++Q IID+ +I+RDGLK
Sbjct: 61  EDLRAPDNQLNEELRANLISIGIWILNETEKIRKRESSNFQGIIDITTIIRDGLK 115


>gi|15964435|ref|NP_384788.1| flagellar biosynthesis regulatory protein FlaF [Sinorhizobium
           meliloti 1021]
 gi|307318932|ref|ZP_07598363.1| flagellar FlaF family protein [Sinorhizobium meliloti AK83]
 gi|10998531|gb|AAG25961.1|AF300968_3 FlaF [Sinorhizobium meliloti]
 gi|15073612|emb|CAC45254.1| Putative flagellin synthesis regulator [Sinorhizobium meliloti
           1021]
 gi|306895346|gb|EFN26101.1| flagellar FlaF family protein [Sinorhizobium meliloti AK83]
          Length = 115

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/115 (45%), Positives = 84/115 (73%), Gaps = 1/115 (0%)

Query: 1   MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M Q+ Y E ++E     + RE  +LDRSI+LL  A +    +++A+EA+++T R+W+ FI
Sbjct: 1   MYQFAYAEIMEEGVAVSKDREKQVLDRSIALLQAAKEKDGYTREAIEAVYFTRRLWIRFI 60

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +DL + DN L +E++ NLISIG+W+L E E+IR+ +S+++Q IID+ +I+RDGLK
Sbjct: 61  EDLRAPDNQLNEELRANLISIGIWILNETEKIRKRESSNFQGIIDITTIIRDGLK 115


>gi|217976243|ref|YP_002360390.1| flagellar biosynthesis regulatory protein FlaF [Methylocella
           silvestris BL2]
 gi|217501619|gb|ACK49028.1| flagellar FlaF family protein [Methylocella silvestris BL2]
          Length = 115

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/110 (39%), Positives = 72/110 (65%)

Query: 5   YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64
           Y E+++ S  ECR+RE   LD ++ LL  A      S  A EAL +  R+W   I+DL+S
Sbjct: 6   YAESLESSPGECRERERRALDHALQLLEKARHDGVGSAAAAEALHFLCRLWKALIEDLIS 65

Query: 65  EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
            +N LP  ++ +L+S+G+WVL+E + IR  KS++++ +I++ S +R+GL+
Sbjct: 66  PENDLPDVLRGDLVSVGIWVLREADSIREEKSSNFRGLIEICSAIRNGLR 115


>gi|163758035|ref|ZP_02165123.1| putative flagellin synthesis regulator protein [Hoeflea
           phototrophica DFL-43]
 gi|162284324|gb|EDQ34607.1| putative flagellin synthesis regulator protein [Hoeflea
           phototrophica DFL-43]
          Length = 115

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 50/115 (43%), Positives = 80/115 (69%), Gaps = 1/115 (0%)

Query: 1   MRQYYHETIQESSIECRKREHWI-LDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M Q+ +  +QE  +   +      ++ SISLL+ A      S++A+EA+++ SR+WV F+
Sbjct: 1   MYQFSYADVQEDGVAEAREREREAINHSISLLTAAKAKGVESREAIEAVYFVSRLWVRFV 60

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +DL S +N L +E++ NLISIG+W++KE ERIR+ +SN++Q IID+  I+RDGLK
Sbjct: 61  EDLASPENQLEEELRANLISIGIWIIKESERIRKRESNNFQGIIDISIIIRDGLK 115


>gi|296445193|ref|ZP_06887153.1| flagellar FlaF family protein [Methylosinus trichosporium OB3b]
 gi|296257367|gb|EFH04434.1| flagellar FlaF family protein [Methylosinus trichosporium OB3b]
          Length = 115

 Score = 94.4 bits (233), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 43/112 (38%), Positives = 73/112 (65%)

Query: 2   RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQD 61
           R  Y +T Q+SS   R RE  +L+R+I LL++A    P S+++ EA     R+W++F+ D
Sbjct: 3   RHLYAQTAQDSSAVARGRERDVLERAIRLLAVAKVKGPRSRESFEATDNLRRLWLLFVDD 62

Query: 62  LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
           L S+ N LP+ ++ +LISIGLWV++E + I   K +++  +I++  ++ DGL
Sbjct: 63  LSSDGNALPEALRASLISIGLWVMREVDAIDSGKCDNFDGLIEINQMIADGL 114


>gi|307311577|ref|ZP_07591218.1| flagellar FlaF family protein [Sinorhizobium meliloti BL225C]
 gi|306899594|gb|EFN30223.1| flagellar FlaF family protein [Sinorhizobium meliloti BL225C]
          Length = 115

 Score = 93.6 bits (231), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 51/115 (44%), Positives = 83/115 (72%), Gaps = 1/115 (0%)

Query: 1   MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M Q+ Y E ++E     + RE  +LDRSI+LL  A +    +++A+ A+++T R+W+ FI
Sbjct: 1   MYQFAYAEIMEEGVAVSKDREKQVLDRSIALLQAAKEKDGYTREAIAAVYFTRRLWIRFI 60

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +DL + DN L +E++ NLISIG+W+L E E+IR+ +S+++Q IID+ +I+RDGLK
Sbjct: 61  EDLRAPDNQLNEELRANLISIGIWILNETEKIRKRESSNFQGIIDITTIIRDGLK 115


>gi|254505115|ref|ZP_05117266.1| Flagellar protein FlaF [Labrenzia alexandrii DFL-11]
 gi|222441186|gb|EEE47865.1| Flagellar protein FlaF [Labrenzia alexandrii DFL-11]
          Length = 116

 Score = 93.6 bits (231), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 47/109 (43%), Positives = 69/109 (63%)

Query: 5   YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64
           Y E +    I+ R  EH  +   I+ L+ AH+    S +AV+ALFYT RVW  F+++L  
Sbjct: 6   YAEVMDNLCIDDRLNEHKAMCIIIAKLTAAHEKGVRSPEAVDALFYTRRVWGFFMENLAD 65

Query: 65  EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
           + N LP E + NLIS+G+WVLKE E +R+ +   + DII++ SI+RD L
Sbjct: 66  DANQLPDETRANLISVGIWVLKEAEALRQWEREDFSDIIEINSIIRDSL 114


>gi|12330683|gb|AAG52880.1| FlaF [Brucella abortus]
          Length = 104

 Score = 93.6 bits (231), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 39/99 (39%), Positives = 66/99 (66%)

Query: 5   YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64
           Y + + +     ++RE  + DRSI++L  A  +   S++ ++A ++TS++W   I DL S
Sbjct: 6   YEDVMNDDMASAKERERMLFDRSIAMLEAARANGAESREGIDAAYFTSKLWTTIIDDLGS 65

Query: 65  EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDII 103
           E+N LP+E++  +ISIG++VLKE ERIR+ +SN Y  +I
Sbjct: 66  EENALPKELRAAIISIGIFVLKEIERIRQGESNDYATLI 104


>gi|304392490|ref|ZP_07374430.1| flagellar biosynthesis regulatory protein FlaF [Ahrensia sp.
           R2A130]
 gi|303295120|gb|EFL89480.1| flagellar biosynthesis regulatory protein FlaF [Ahrensia sp.
           R2A130]
          Length = 117

 Score = 92.0 bits (227), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 69/115 (60%), Gaps = 1/115 (0%)

Query: 1   MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M Q+ Y ET   S    R  E  +L +SI LL +A +    SK AVEA+++T+R+W  FI
Sbjct: 3   MGQFGYAETNANSGKAARAGERALLRQSIDLLKLAKEQGTQSKAAVEAVYFTNRLWTAFI 62

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +DL  E+N L   ++ NLISIG+ +L+   RIR     +  +I++V  I+ DGL+
Sbjct: 63  EDLGGEENRLEPTLRANLISIGISILRSTGRIREGDETAIDEIVEVSGIILDGLR 117


>gi|328545488|ref|YP_004305597.1| flagellar protein flaF [polymorphum gilvum SL003B-26A1]
 gi|326415229|gb|ADZ72292.1| Flagellar protein flaF [Polymorphum gilvum SL003B-26A1]
          Length = 116

 Score = 92.0 bits (227), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 45/110 (40%), Positives = 71/110 (64%)

Query: 5   YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64
           Y +TI +  ++ R  E   +D  I+ L  A +    S++AVEA+F T R+W  FI+ L  
Sbjct: 6   YAQTIDDLCVDQRSDERQAMDIVIAQLERAREKGLKSREAVEAIFNTRRLWSFFIESLAD 65

Query: 65  EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           + N LP  ++ +LISIG+WV+KE ER+R+ ++ +   +IDV ++VRDGLK
Sbjct: 66  DANELPPSLRADLISIGIWVIKEVERVRQRETETLDALIDVNAMVRDGLK 115


>gi|115523196|ref|YP_780107.1| flagellar biosynthesis regulatory protein FlaF [Rhodopseudomonas
           palustris BisA53]
 gi|115517143|gb|ABJ05127.1| flagellar FlaF family protein [Rhodopseudomonas palustris BisA53]
          Length = 115

 Score = 90.5 bits (223), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 44/109 (40%), Positives = 64/109 (58%)

Query: 5   YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64
           Y   I++S+ E R RE+  LD  I LL           +  EAL +  ++W  F+QDL S
Sbjct: 6   YDNMIEDSAHEARAREYQALDHGIDLLKRLQNGDLQPFEQTEALLFMRKLWTFFVQDLSS 65

Query: 65  EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
             N LP+ ++  LISIGLWV+KE +RIR+ K+    D+I + +I+RD L
Sbjct: 66  PKNGLPESLRAELISIGLWVIKEADRIRQEKATDIDDLIAINTIIRDSL 114


>gi|118589963|ref|ZP_01547367.1| flagellar protein flaF [Stappia aggregata IAM 12614]
 gi|118437460|gb|EAV44097.1| flagellar protein flaF [Stappia aggregata IAM 12614]
          Length = 116

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/109 (41%), Positives = 66/109 (60%)

Query: 5   YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64
           Y E + +   + R  EH  +   I  L++A +    S +AV+ALFYT R+W  F++ L  
Sbjct: 6   YAEVMDDLCSDQRLNEHEAMTIVIGKLNVAKERGVKSPEAVDALFYTRRLWSYFLEHLAD 65

Query: 65  EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
           E N LP E + NLIS+G+WVLKE E +R+ +   + DII + SI+RD L
Sbjct: 66  EANELPIETRANLISVGIWVLKEVEALRQWEQEDFSDIIQINSIIRDSL 114


>gi|90422627|ref|YP_530997.1| flagellar biosynthesis regulatory protein FlaF [Rhodopseudomonas
           palustris BisB18]
 gi|90104641|gb|ABD86678.1| flagellar FlaF [Rhodopseudomonas palustris BisB18]
          Length = 115

 Score = 86.3 bits (212), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/109 (40%), Positives = 62/109 (56%)

Query: 5   YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64
           Y   I++S  E R RE   L   I LL+        S   VEAL Y  R+W  F+ DL S
Sbjct: 6   YDTVIEDSGQEARARERLALSHGIDLLTRLQSGDLRSPDDVEALLYIRRLWTFFVLDLSS 65

Query: 65  EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
             N LP++++ +LISIG WV+KE +RIR+ K+    ++I V  ++RD L
Sbjct: 66  PRNGLPEKLRADLISIGFWVIKEADRIRQEKATDIAELIAVNVVIRDSL 114


>gi|121602017|ref|YP_989380.1| flagellar biosynthesis regulatory protein FlaF [Bartonella
           bacilliformis KC583]
 gi|120614194|gb|ABM44795.1| Flaf protein [Bartonella bacilliformis KC583]
          Length = 122

 Score = 84.7 bits (208), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 68/109 (62%)

Query: 5   YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64
           Y + +++ ++  R+RE  + DR I LL  A +  P + +A EA+ +  ++WV+ I+DL  
Sbjct: 6   YEDVMEDDAMSARERERSLFDRCIKLLQDAKEKGPGTYEANEAVQFARKLWVILIEDLGQ 65

Query: 65  EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
            +N LPQ +K +LISIG ++LKE +R+   +   +  ++++   +RDGL
Sbjct: 66  AENALPQTLKASLISIGFFILKEIQRLDEGEIADFDVLVEISESIRDGL 114


>gi|312115277|ref|YP_004012873.1| flagellar FlaF family protein [Rhodomicrobium vannielii ATCC 17100]
 gi|311220406|gb|ADP71774.1| flagellar FlaF family protein [Rhodomicrobium vannielii ATCC 17100]
          Length = 115

 Score = 84.7 bits (208), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 48/114 (42%), Positives = 66/114 (57%), Gaps = 4/114 (3%)

Query: 5   YHETIQESSIE----CRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQ 60
           YH   QE+        R  E   + RSI+LL    ++   S +A+EAL YT R+WV FI+
Sbjct: 2   YHSPYQEALATDVRMARSTERASILRSINLLQRGAEAGSRSAEAIEALLYTKRLWVFFIE 61

Query: 61  DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
            L   DN LP +++ +LISIG+ VL+  E IRR +S  +  IIDV   V +GLK
Sbjct: 62  QLGLPDNRLPHKLRADLISIGIAVLRRIEAIRRGESKDFGFIIDVSRSVAEGLK 115


>gi|319403981|emb|CBI77569.1| Flaf protein [Bartonella rochalimae ATCC BAA-1498]
          Length = 122

 Score = 84.0 bits (206), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 67/109 (61%)

Query: 5   YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64
           Y + +++ ++  R+RE ++ DR I LL  A    P S +A +A+ +  ++WV+ I+DL  
Sbjct: 6   YEDVMEDDAMSARERERFLFDRCIKLLLAAKAKGPGSCEAKDAVQFARKLWVILIEDLGQ 65

Query: 65  EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
             N LPQ +K +LISIG ++LKE +++   +   +  ++++   +RDGL
Sbjct: 66  AANALPQALKASLISIGFFILKEIQKLDEGEITDFDVLVEISESIRDGL 114


>gi|319898659|ref|YP_004158752.1| Flaf protein [Bartonella clarridgeiae 73]
 gi|319402623|emb|CBI76168.1| Flaf protein [Bartonella clarridgeiae 73]
          Length = 122

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 67/109 (61%)

Query: 5   YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64
           Y + +++ ++  R+RE ++ DR I LL  A    P + +A EA+ +  ++WV+ I+DL  
Sbjct: 6   YEDVMEDDAMSARERERFLFDRCIKLLLDAKMKGPGTCEAKEAVQFARKLWVILIEDLGQ 65

Query: 65  EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
             N LPQ +K +LISIG ++LKE +++   +   +  ++++   +RDGL
Sbjct: 66  AANALPQALKASLISIGFFILKEIQKLDEGEITDFDVLVEISESIRDGL 114


>gi|319406997|emb|CBI80634.1| Flaf protein [Bartonella sp. 1-1C]
          Length = 122

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 67/109 (61%)

Query: 5   YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64
           Y + +++ ++  R+RE ++ DR I LL  A    P + +A +A+ +  ++WV+ I+DL  
Sbjct: 6   YEDVMEDDAMSARERERFLFDRCIKLLLAAKAKGPGTCEAKDAVQFARKLWVILIEDLGQ 65

Query: 65  EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
             N LPQ +K +LISIG ++LKE +++   +   +  ++++   +RDGL
Sbjct: 66  AANALPQALKASLISIGFFILKEIQKLDEGEITDFDVLVEISESIRDGL 114


>gi|254473396|ref|ZP_05086793.1| flagellar FlaF [Pseudovibrio sp. JE062]
 gi|211957512|gb|EEA92715.1| flagellar FlaF [Pseudovibrio sp. JE062]
          Length = 115

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 68/109 (62%)

Query: 5   YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64
           Y ET+++SS + R +E  +    ++ L  A +    S +A +AL    R+W + I DL S
Sbjct: 6   YAETLEDSSEDRRGQERELFSLVVAQLQAADEHGSASSEAAQALTSVHRLWSILISDLGS 65

Query: 65  EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
            +N LP E++ +LISIG+W +K+ + IR  KS+ ++ +I++  +VRDGL
Sbjct: 66  PENGLPAELRADLISIGIWCVKQADLIREGKSDDFKSLIEINELVRDGL 114


>gi|319405424|emb|CBI79043.1| Flaf protein [Bartonella sp. AR 15-3]
          Length = 122

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 67/109 (61%)

Query: 5   YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64
           Y + +++ ++  R+RE ++ DR I LL  A    P + +A +A+ +  ++WV+ I+DL  
Sbjct: 6   YEDIMEDDAMSARERERFLFDRCIKLLLAAKAKGPGTCEAKDAVQFARKLWVILIEDLGQ 65

Query: 65  EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
             N LPQ +K +LISIG ++LKE +++   +   +  ++++   +RDGL
Sbjct: 66  AANALPQALKASLISIGFFILKEIQKLDEGEITDFDVLVEISESIRDGL 114


>gi|170744546|ref|YP_001773201.1| flagellar biosynthesis regulatory protein FlaF [Methylobacterium
           sp. 4-46]
 gi|168198820|gb|ACA20767.1| flagellar FlaF family protein [Methylobacterium sp. 4-46]
          Length = 115

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 68/113 (60%)

Query: 2   RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQD 61
           R  Y+E ++++   CR+RE    DR+++LL  A  +    +   EA+ +  R+W V I+D
Sbjct: 3   RFSYNEILEDAPDLCRERERAAFDRALALLRKADAADAKFEDRGEAVSFLQRLWDVLIED 62

Query: 62  LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           L++ +N LP+ ++ +L+SIGLW ++E     R    S   +IDV + +RDGL+
Sbjct: 63  LLNPENGLPEPLRTDLVSIGLWSMREASEALRLPERSLAPLIDVNTAIRDGLR 115


>gi|323136998|ref|ZP_08072078.1| flagellar FlaF family protein [Methylocystis sp. ATCC 49242]
 gi|322397759|gb|EFY00281.1| flagellar FlaF family protein [Methylocystis sp. ATCC 49242]
          Length = 115

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 67/112 (59%)

Query: 2   RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQD 61
           +Q Y E   ES    R +E   L+ +I  L++A    P + +A EA  Y  R+W +F++D
Sbjct: 3   QQRYAEIASESGKNARAKEREALEIAIKKLAVAKTRGPLTPEAFEATNYLRRLWAIFMED 62

Query: 62  LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
           L +++N LP+ ++ +LISIGLW+ +E + I    S ++  +I+V  ++ DGL
Sbjct: 63  LSNDENGLPESLRASLISIGLWIRREADLIDTGGSVNFDGLIEVNQLIADGL 114


>gi|158422274|ref|YP_001523566.1| flagellar biosynthesis regulatory protein FlaF [Azorhizobium
           caulinodans ORS 571]
 gi|158329163|dbj|BAF86648.1| flagellar FlaF protein [Azorhizobium caulinodans ORS 571]
          Length = 115

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 67/110 (60%)

Query: 5   YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64
           Y E +++SS E R RE    DR++ LL  A  +  ++ +   A+ +  R+W + I+DL  
Sbjct: 6   YAEILEDSSTESRARERDAFDRALELLVSAESAGLDTPECRAAMLFLQRLWGLLIRDLTD 65

Query: 65  EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
            +N L  E++ +L+SIGLW ++E +R+    S+++  +I++   +RDGL+
Sbjct: 66  ANNELAPELRADLVSIGLWNIREADRVLEQSSSNFSGLININRTIRDGLQ 115


>gi|27381966|ref|NP_773495.1| flagellar biosynthesis regulatory protein FlaF [Bradyrhizobium
           japonicum USDA 110]
 gi|27355136|dbj|BAC52120.1| fliC [Bradyrhizobium japonicum USDA 110]
          Length = 117

 Score = 81.3 bits (199), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 64/111 (57%)

Query: 3   QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDL 62
           + Y   ++ES  + R RE   L   I  L    K   + +  V++L Y  R+W +FI+DL
Sbjct: 7   EAYEAVVEESGYQERGRERQALSLGIDRLERIEKGPFSFEDLVQSLLYVRRLWTIFIEDL 66

Query: 63  VSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
              +N LP +++ ++ISIGLWV+KE +R+R  KS     +I++  ++RD L
Sbjct: 67  SHPENGLPDKLRADIISIGLWVIKEADRLREEKSGDVMQLIEINRLIRDAL 117


>gi|319409166|emb|CBI82810.1| Flaf protein [Bartonella schoenbuchensis R1]
          Length = 122

 Score = 80.9 bits (198), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 65/109 (59%)

Query: 5   YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64
           Y + +++ ++  R+RE  + DR I L   A    P S +  EA+ +  ++W++ I+DL  
Sbjct: 6   YEDVMEDDAMSARERERSLFDRCIKLFLDAKAKGPGSHEVNEAVQFARKLWIILIEDLGQ 65

Query: 65  EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
            +N LP E+K +LISIG ++LKE +++   K   +  ++++   +RDGL
Sbjct: 66  AENALPPELKASLISIGFFILKEIQKLDEGKVADFDVLVEISESIRDGL 114


>gi|170748122|ref|YP_001754382.1| flagellar biosynthesis regulatory protein FlaF [Methylobacterium
           radiotolerans JCM 2831]
 gi|170654644|gb|ACB23699.1| flagellar FlaF family protein [Methylobacterium radiotolerans JCM
           2831]
          Length = 119

 Score = 78.2 bits (191), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 67/112 (59%)

Query: 3   QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDL 62
           + Y ET+ +S    R+RE    DR+I L+  A  +  +++   EA  +  R+W + I DL
Sbjct: 8   EAYRETMGDSPAIGREREREAFDRAIELMKRADAAEASAELRWEATSFLQRLWSMLIDDL 67

Query: 63  VSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
            +  N LP +++ +LISIGLW +   ++I R  ++ ++ +I V +++RDGL+
Sbjct: 68  ANPANSLPPQLRADLISIGLWNMSRSDQILRGDASGFEPLIYVNTLIRDGLR 119


>gi|182680454|ref|YP_001834600.1| flagellar biosynthesis regulatory protein FlaF [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|182636337|gb|ACB97111.1| flagellar FlaF family protein [Beijerinckia indica subsp. indica
           ATCC 9039]
          Length = 91

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 61/91 (67%)

Query: 24  LDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLW 83
           +D ++ LL  A     +S   +EAL Y  R+W + ++DL + DN LP+ ++ +L+S+G+W
Sbjct: 1   MDHALDLLENARNKGASSIACIEALSYLCRLWTLLMEDLANPDNDLPEVLRADLLSVGIW 60

Query: 84  VLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +LKE + I++  S++   +I++ +++RDGLK
Sbjct: 61  ILKETDAIQKGTSDNLVGLIEICTLIRDGLK 91


>gi|188579928|ref|YP_001923373.1| flagellar biosynthesis regulatory protein FlaF [Methylobacterium
           populi BJ001]
 gi|179343426|gb|ACB78838.1| flagellar FlaF family protein [Methylobacterium populi BJ001]
          Length = 116

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 60/114 (52%), Gaps = 1/114 (0%)

Query: 2   RQYYHETIQESSIECRKREHWILDRSISLL-SIAHKSLPNSKQAVEALFYTSRVWVVFIQ 60
           R  Y E ++++    R+RE    DR++ LL +   +      +   A+     +W V I 
Sbjct: 3   RLSYSEIMEDAPDLGREREREAFDRALGLLRTAEAQGAGAGAERNSAVGSIQELWNVLIS 62

Query: 61  DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           DL+  +N LP+ ++ +L++IGLW ++E   +      S   +I+V + +RDGL+
Sbjct: 63  DLLDPENGLPEGLRADLVAIGLWNMREAGEVLSTPERSLSALIEVNTSIRDGLR 116


>gi|254559271|ref|YP_003066366.1| flagellar protein FlaF [Methylobacterium extorquens DM4]
 gi|254266549|emb|CAX22313.1| Flagellar protein FlaF [Methylobacterium extorquens DM4]
          Length = 116

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 59/114 (51%), Gaps = 1/114 (0%)

Query: 2   RQYYHETIQESSIECRKREHWILDRSISLLSIAH-KSLPNSKQAVEALFYTSRVWVVFIQ 60
           R  Y E ++++    R+RE    DR++S L  A  +          A+     +W V I 
Sbjct: 3   RLSYAEIMEDAPDLGRERERDAFDRALSQLRTAEAQGAAAGPARSAAVGSIQDLWNVLIA 62

Query: 61  DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           DL+  +N LP+ ++ +L++IGLW ++E   +      S   +I+V + +RDGL+
Sbjct: 63  DLLDPENALPESLRADLVAIGLWNMREAGEVLSTPDRSLAALIEVNTSIRDGLQ 116


>gi|163850126|ref|YP_001638169.1| flagellar biosynthesis regulatory protein FlaF [Methylobacterium
           extorquens PA1]
 gi|218528730|ref|YP_002419546.1| flagellar biosynthesis regulatory protein FlaF [Methylobacterium
           chloromethanicum CM4]
 gi|240137260|ref|YP_002961729.1| Flagellar protein FlaF [Methylobacterium extorquens AM1]
 gi|163661731|gb|ABY29098.1| flagellar FlaF family protein [Methylobacterium extorquens PA1]
 gi|218521033|gb|ACK81618.1| flagellar FlaF family protein [Methylobacterium chloromethanicum
           CM4]
 gi|240007226|gb|ACS38452.1| Flagellar protein FlaF [Methylobacterium extorquens AM1]
          Length = 116

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 59/114 (51%), Gaps = 1/114 (0%)

Query: 2   RQYYHETIQESSIECRKREHWILDRSISLLSIAH-KSLPNSKQAVEALFYTSRVWVVFIQ 60
           R  Y E ++++    R+RE    DR++S L  A  +          A+     +W V I 
Sbjct: 3   RLSYAEIMEDAPDLGRERERDAFDRALSQLRTAEAQGAAAGPARSAAVGSIQDLWNVLIA 62

Query: 61  DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           DL+  +N LP+ ++ +L++IGLW ++E   +      S   +I+V + +RDGL+
Sbjct: 63  DLLDPENALPESLRADLVAIGLWNMREAGEVLSAPDRSLAALIEVNTSIRDGLQ 116


>gi|218507949|ref|ZP_03505827.1| flagellar biosynthesis regulatory protein FlaF [Rhizobium etli
          Brasil 5]
          Length = 98

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 41/61 (67%), Gaps = 1/61 (1%)

Query: 1  MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
          M Q+ Y E +Q+S  + ++RE  +LDRSI LL++A       ++A+E LFYT RVW+ FI
Sbjct: 1  MYQFSYAEVMQDSVADAKEREWQVLDRSIELLALARDKDTYGREAIEVLFYTRRVWISFI 60

Query: 60 Q 60
          +
Sbjct: 61 R 61


>gi|296531759|ref|ZP_06894581.1| possible flaF protein [Roseomonas cervicalis ATCC 49957]
 gi|296267898|gb|EFH13703.1| possible flaF protein [Roseomonas cervicalis ATCC 49957]
          Length = 141

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 47/97 (48%), Gaps = 5/97 (5%)

Query: 20  EHWILDRSISLLSIAHKSLPNSKQAV--EALFYTSRVWVVFIQDLVSEDNHLPQEVKLNL 77
           E+ +L R+ SLL  A +  PN+  +   EA+     VW  F  DL +E+N      K  L
Sbjct: 38  EYRVLARATSLLEAAQR--PNAGPSALPEAIHENRMVWTAFAADLAAEENGWDMVTKGRL 95

Query: 78  ISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +S+  WV  E ER+ R    S   + DV   V  GLK
Sbjct: 96  LSLARWVFAESERVLRG-GRSPHALCDVNRAVMAGLK 131


>gi|163794169|ref|ZP_02188142.1| flagellar FlaF family protein [alpha proteobacterium BAL199]
 gi|159180783|gb|EDP65302.1| flagellar FlaF family protein [alpha proteobacterium BAL199]
          Length = 143

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 44/68 (64%), Gaps = 4/68 (5%)

Query: 43  QAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDI 102
           Q ++AL + ++VW  F++D+ +E N LP+E++  ++S+G+WV +E   +    ++   DI
Sbjct: 51  QIMDALNWNNQVWDAFVEDVGTEGNMLPRELRAAIVSLGIWVTRETALV----TSGEGDI 106

Query: 103 IDVISIVR 110
             +I++ R
Sbjct: 107 DALIAVNR 114


>gi|86139474|ref|ZP_01058043.1| flagellar protein FlaF, putative [Roseobacter sp. MED193]
 gi|85823977|gb|EAQ44183.1| flagellar protein FlaF, putative [Roseobacter sp. MED193]
          Length = 128

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 7/102 (6%)

Query: 19  REHWILDRSISLLSIAHKSLPNSKQA------VEALFYTSRVWVVFIQDLVSEDNHLPQE 72
           +E+ I+ RS   L  AHK    +K         EAL    ++W +F  DL S DN LPQ+
Sbjct: 24  KEYDIVARSTQNLLAAHKVASANKGTEGFKVLTEALHKNRKMWNIFTADLASSDNQLPQD 83

Query: 73  VKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           VK NL  +  +  +   ++   K+N  + +I++   V  GL+
Sbjct: 84  VKDNLFYLAEFTRQHTSKVLSRKAN-VRALIEINMAVLRGLR 124


>gi|163794166|ref|ZP_02188139.1| flagellar FlaF family protein [alpha proteobacterium BAL199]
 gi|159180780|gb|EDP65299.1| flagellar FlaF family protein [alpha proteobacterium BAL199]
          Length = 124

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 43/80 (53%)

Query: 12 SSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQ 71
          ++   R  E+ +L +    L  A   +   ++ + A+    +VW VF+ DL   DN LPQ
Sbjct: 15 ATQNGRDLEYRLLAQVTGALIKARDGMATLQERLNAILRNEKVWGVFLADLNHPDNGLPQ 74

Query: 72 EVKLNLISIGLWVLKECERI 91
          ++K  + S+ L+V+KE + +
Sbjct: 75 QLKGGIASLALFVMKETQLV 94


>gi|209963551|ref|YP_002296466.1| flagellar protein FlaF, putative [Rhodospirillum centenum SW]
 gi|209957017|gb|ACI97653.1| flagellar protein FlaF, putative [Rhodospirillum centenum SW]
          Length = 124

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 2/80 (2%)

Query: 5  YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64
          Y ++++++ +  R+ EH +  +  + L +  +  P++   + A+    R+W   + DL  
Sbjct: 11 YRQSMRDT-VSPRQLEHRVFSQVTAELEVCTRQ-PDAFATIRAVDRNRRLWGALVTDLAQ 68

Query: 65 EDNHLPQEVKLNLISIGLWV 84
           DN LP  +K  LIS+GLWV
Sbjct: 69 PDNLLPDALKAGLISLGLWV 88


>gi|307945681|ref|ZP_07661017.1| protein FlaF [Roseibium sp. TrichSKD4]
 gi|307771554|gb|EFO30779.1| protein FlaF [Roseibium sp. TrichSKD4]
          Length = 97

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 1/70 (1%)

Query: 46  EALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKEC-ERIRRNKSNSYQDIID 104
           +AL Y  ++W + +    + +N LPQE+K N+ S+G++V K+  E +   + N    +I 
Sbjct: 24  DALTYNRKLWTILVTSATNGENPLPQEIKNNIASLGVFVFKQTMEAMTDEEGNKLNSLIS 83

Query: 105 VISIVRDGLK 114
           +   + +GL+
Sbjct: 84  INRAIAEGLR 93


>gi|92116893|ref|YP_576622.1| flagellar biosynthesis regulatory protein FlaF [Nitrobacter
           hamburgensis X14]
 gi|91799787|gb|ABE62162.1| flagellar FlaF [Nitrobacter hamburgensis X14]
          Length = 121

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 1/112 (0%)

Query: 3   QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDL 62
           Q Y  T Q SS         +L  +  L  I +      K    AL +  R+W +F+   
Sbjct: 6   QAYARTAQTSSSPREIEAQALLKAARQLQEIQNNWTGPDKNMHNALLFNRRLWSIFMSAA 65

Query: 63  VSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNS-YQDIIDVISIVRDGL 113
            S+DN  P EV+ N+ +IG++V+K+   ++ N   +  + +ID+   +  GL
Sbjct: 66  DSDDNQQPLEVRQNIANIGVFVMKQTIDMQMNPDPAKLKSLIDINCNLAAGL 117


>gi|295689336|ref|YP_003593029.1| flagellar FlaF family protein [Caulobacter segnis ATCC 21756]
 gi|295431239|gb|ADG10411.1| flagellar FlaF family protein [Caulobacter segnis ATCC 21756]
          Length = 120

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 44/85 (51%), Gaps = 1/85 (1%)

Query: 29  SLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKEC 88
           +L+  +     +  + ++AL +  +VW     D    DN LP E++ ++IS+ LWV +  
Sbjct: 30  ALMEASQAPADDFAKRIDALDWNRKVWSALATDCSLPDNQLPMELRASIISLSLWVSRHS 89

Query: 89  ERIRRNKSNSYQDIIDVISIVRDGL 113
             + R K   ++ +I++  I+  GL
Sbjct: 90  SAVMR-KEEEFEPLIEINRIIMQGL 113


>gi|254500444|ref|ZP_05112595.1| Flagellar protein FlaF [Labrenzia alexandrii DFL-11]
 gi|222436515|gb|EEE43194.1| Flagellar protein FlaF [Labrenzia alexandrii DFL-11]
          Length = 125

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 2/88 (2%)

Query: 3  QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAV--EALFYTSRVWVVFIQ 60
          Q Y +T Q + +  R+ E  +L ++ + L +      +   A   +AL Y  ++W V + 
Sbjct: 7  QAYQKTSQAAPVSPRELEATLLMKAAARLQLIKDEWDDLSLAEVDDALIYNRKLWTVLVT 66

Query: 61 DLVSEDNHLPQEVKLNLISIGLWVLKEC 88
             SE++ LP E+K N+ S+G++V K+ 
Sbjct: 67 SATSEESSLPLEIKNNIGSLGVFVFKQT 94


>gi|209967004|ref|YP_002299919.1| flagellar protein FlaF, putative [Rhodospirillum centenum SW]
 gi|209960470|gb|ACJ01107.1| flagellar protein FlaF, putative [Rhodospirillum centenum SW]
          Length = 138

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 30/48 (62%)

Query: 39 PNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLK 86
          P+    + AL    ++W+  + DL + +N LP+E+K  LIS+G+W ++
Sbjct: 38 PDPTARIRALHRNHQLWLTLVSDLATPENPLPEELKGRLISLGMWSMR 85


>gi|83858827|ref|ZP_00952349.1| flaF protein [Oceanicaulis alexandrii HTCC2633]
 gi|83853650|gb|EAP91502.1| flaF protein [Oceanicaulis alexandrii HTCC2633]
          Length = 118

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 1/72 (1%)

Query: 42  KQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQD 101
           +Q V AL    RVW  F  D  S  N+LP  ++  +IS+ ++V KE     R +++  + 
Sbjct: 43  RQRVAALDRNRRVWSAFAADCASSHNNLPDSLRAGIISLSIFVSKETSAAMRGETD-VET 101

Query: 102 IIDVISIVRDGL 113
           +ID+   +  GL
Sbjct: 102 LIDINRTIMQGL 113


>gi|126738587|ref|ZP_01754292.1| flagellar protein FlaF, putative [Roseobacter sp. SK209-2-6]
 gi|126720386|gb|EBA17092.1| flagellar protein FlaF, putative [Roseobacter sp. SK209-2-6]
          Length = 128

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 56/106 (52%), Gaps = 9/106 (8%)

Query: 16  CRKREHWILDRSISLLSIAHKSLPNSKQAVE-------ALFYTSRVWVVFIQDLVSEDNH 68
            +  E+ ++ R+   L  AHK + N+K   E       AL    ++W +F  DL++++N 
Sbjct: 21  TKDNEYEVVARATHKLLAAHK-VANAKSGPEGFKVLASALHTNRKMWNIFEVDLLAKENQ 79

Query: 69  LPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           LPQEVK NL+ +  +  +   ++   K+   + ++++ + +  GL+
Sbjct: 80  LPQEVKTNLLYLAEFTRQHTSKVLSRKA-GIKPLVEINTAIMRGLR 124


>gi|154252991|ref|YP_001413815.1| flagellar FlaF family protein [Parvibaculum lavamentivorans DS-1]
 gi|154156941|gb|ABS64158.1| flagellar FlaF family protein [Parvibaculum lavamentivorans DS-1]
          Length = 125

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 2/109 (1%)

Query: 5   YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAV--EALFYTSRVWVVFIQDL 62
           Y    + ++ + R+ E  IL R+   L     +  N   +   +AL Y  R+W VF    
Sbjct: 8   YANASRMATKDPREFEATILTRAAGQLQRIRDNWTNETASALRDALLYNRRIWTVFAASA 67

Query: 63  VSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRD 111
             +++ LP+E+K N+ ++ +++ K    I  ++  + Q +  +I I R+
Sbjct: 68  AEKEHPLPREIKQNIANLAIFIFKRTSEIESSREPAPQLLDTLIMINRE 116


>gi|114570513|ref|YP_757193.1| flagellar biosynthesis regulatory protein FlaF [Maricaulis maris
           MCS10]
 gi|114340975|gb|ABI66255.1| flagellar FlaF family protein [Maricaulis maris MCS10]
          Length = 126

 Score = 42.7 bits (99), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 3/80 (3%)

Query: 36  KSLP--NSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRR 93
           KSLP  + +   +A+ +  RVW     D  S+DN LP+ ++  +IS+ ++V K+     R
Sbjct: 35  KSLPIESLQDRAQAIDWNRRVWSNLALDCASQDNKLPEALRAAIISLSIFVSKQGSHAMR 94

Query: 94  NKSNSYQDIIDVISIVRDGL 113
           N   +  D++D+   V  GL
Sbjct: 95  NP-EAIDDLVDINRTVMQGL 113


>gi|161485648|ref|NP_420272.2| flagellar biosynthesis regulatory protein FlaF [Caulobacter
           crescentus CB15]
 gi|221234463|ref|YP_002516899.1| flagellar biosynthesis regulatory protein FlaF [Caulobacter
           crescentus NA1000]
 gi|220963635|gb|ACL94991.1| flagellar biosynthesis regulatory protein flaF [Caulobacter
           crescentus NA1000]
          Length = 120

 Score = 42.7 bits (99), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 1/69 (1%)

Query: 45  VEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIID 104
           ++AL +  +VW     D    +N LP E++ ++IS+ LWV +    + R K   ++ +I+
Sbjct: 46  IDALDWNRKVWSALATDCALPENQLPMELRASIISLSLWVGRHSSAVMR-KEEDFEPLIE 104

Query: 105 VISIVRDGL 113
           +  ++  GL
Sbjct: 105 INRMIMQGL 113


>gi|83944194|ref|ZP_00956650.1| flaF protein [Sulfitobacter sp. EE-36]
 gi|83845061|gb|EAP82942.1| flaF protein [Sulfitobacter sp. EE-36]
          Length = 133

 Score = 42.4 bits (98), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 1/68 (1%)

Query: 46  EALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDV 105
           + L+   RVW+ F  DL  +DN L  +++  LIS+ LWV    + +     N  + +ID+
Sbjct: 57  DTLWENQRVWLTFKADLAEKDNGLTADLRAALISLALWVENHTKAVLSGSKN-VKPLIDI 115

Query: 106 ISIVRDGL 113
              + DGL
Sbjct: 116 NRSIIDGL 123


>gi|170751769|ref|YP_001758029.1| flagellar FlaF family protein [Methylobacterium radiotolerans JCM
          2831]
 gi|170658291|gb|ACB27346.1| flagellar FlaF family protein [Methylobacterium radiotolerans JCM
          2831]
          Length = 123

 Score = 42.4 bits (98), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 2/79 (2%)

Query: 12 SSIECRKREHWILDRSISLLSIAHKSLPNSKQA--VEALFYTSRVWVVFIQDLVSEDNHL 69
          S++  R+ E  +L ++   L  A + L +       EAL +  RVW +   +  S+ N L
Sbjct: 14 SALSPREAESAVLLKAAQKLIGASQGLASGDAGRINEALTFNQRVWTLLTSEATSDVNPL 73

Query: 70 PQEVKLNLISIGLWVLKEC 88
          P +VK  +  +G++VL+ C
Sbjct: 74 PADVKQGVGRLGVFVLQSC 92


>gi|328543142|ref|YP_004303251.1| flagellar protein FlaF [polymorphum gilvum SL003B-26A1]
 gi|326412888|gb|ADZ69951.1| Flagellar protein FlaF [Polymorphum gilvum SL003B-26A1]
          Length = 97

 Score = 42.4 bits (98), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 27/41 (65%)

Query: 46 EALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLK 86
          +AL Y  ++W V +      ++HLPQ++K NL S+G++V K
Sbjct: 24 DALAYNRKLWTVLVTSATGAESHLPQDLKNNLASLGVFVFK 64


>gi|120266|sp|P21295|FLAF_CAUCR RecName: Full=Protein flaF
 gi|40421|emb|CAA33231.1| unnamed protein product [Caulobacter crescentus CB15]
 gi|13422828|gb|AAK23440.1| flaF protein [Caulobacter crescentus CB15]
          Length = 102

 Score = 42.4 bits (98), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 1/69 (1%)

Query: 45  VEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIID 104
           ++AL +  +VW     D    +N LP E++ ++IS+ LWV +    + R K   ++ +I+
Sbjct: 28  IDALDWNRKVWSALATDCALPENQLPMELRASIISLSLWVGRHSSAVMR-KEEDFEPLIE 86

Query: 105 VISIVRDGL 113
           +  ++  GL
Sbjct: 87  INRMIMQGL 95


>gi|146341919|ref|YP_001206967.1| flagellar biosynthesis regulatory protein FlaF [Bradyrhizobium sp.
           ORS278]
 gi|146194725|emb|CAL78750.1| conserved hypothetical protein; putative FlaF protein
           [Bradyrhizobium sp. ORS278]
          Length = 96

 Score = 41.6 bits (96), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 18/69 (26%), Positives = 42/69 (60%), Gaps = 1/69 (1%)

Query: 46  EALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNS-YQDIID 104
           +AL +  R+W +F+  + +EDN  P +++ N+ +IG++V+K+   ++ +   +  + +ID
Sbjct: 24  KALLFNRRLWTIFMSAMEAEDNPNPLDIRQNIANIGVFVMKQTIEMQMDPDPAKLKSLID 83

Query: 105 VISIVRDGL 113
           +   +  GL
Sbjct: 84  INCHIAAGL 92


>gi|89068720|ref|ZP_01156106.1| hypothetical protein OG2516_06766 [Oceanicola granulosus HTCC2516]
 gi|89045683|gb|EAR51745.1| hypothetical protein OG2516_06766 [Oceanicola granulosus HTCC2516]
          Length = 132

 Score = 41.6 bits (96), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 19/123 (15%)

Query: 5   YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVE-----------ALFYTSR 53
           Y  TI+ES    R+ E  +L +  + L  A ++   +  A E           AL     
Sbjct: 6   YKRTIRESETP-RQIERRVLAQLTARLEDAAQAYDTAATAPERIAILAGGLRDALAENVT 64

Query: 54  VWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVR--- 110
           VW+ F  DL S  N LP  +++ LIS+ LW+ K+  RI        Q ++ + ++ R   
Sbjct: 65  VWLHFRYDLSSPANELPPALRVQLISLSLWIEKQTNRIL----GGGQGLVQLAAVNRSVV 120

Query: 111 DGL 113
           DGL
Sbjct: 121 DGL 123


>gi|118588728|ref|ZP_01546136.1| putative flagellar protein FlaF [Stappia aggregata IAM 12614]
 gi|118438714|gb|EAV45347.1| putative flagellar protein FlaF [Stappia aggregata IAM 12614]
          Length = 94

 Score = 41.2 bits (95), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 17/70 (24%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 46  EALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERI-RRNKSNSYQDIID 104
           +AL Y  ++W + +    S ++ LPQ++K N+ ++G++V K+   +   +  N    +I 
Sbjct: 24  DALVYNRKLWTILVTSATSAESELPQDIKNNIATLGVFVFKQTMTVMTTDDENKLDTLIS 83

Query: 105 VISIVRDGLK 114
           +   + +GL+
Sbjct: 84  INRSIAEGLR 93


>gi|114798597|ref|YP_758996.1| putative flagellar biosynthesis regulatory protein [Hyphomonas
           neptunium ATCC 15444]
 gi|114738771|gb|ABI76896.1| putative flagellar biosynthesis regulatory protein [Hyphomonas
           neptunium ATCC 15444]
          Length = 128

 Score = 41.2 bits (95), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 55/110 (50%), Gaps = 3/110 (2%)

Query: 5   YHETIQESSIECRKREHWILDR-SISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
           Y +  Q ++   R  E+ + ++ +  L S+      N+    +A++   ++W +   DL+
Sbjct: 9   YGQVTQRTAT-GRALEYAVFEQITRDLQSVHDDGGANTGAWGDAIYRNLQLWTIIATDLL 67

Query: 64  SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
           S +N LP E K  LIS+  +V +   +I  + +   +DII+V   +  GL
Sbjct: 68  SAENALPDETKAGLISLSEFVRRTSMKI-LSGTEGLEDIIEVNRTIMAGL 116


>gi|85715037|ref|ZP_01046022.1| putative flagellar protein FlaF [Nitrobacter sp. Nb-311A]
 gi|85698234|gb|EAQ36106.1| putative flagellar protein FlaF [Nitrobacter sp. Nb-311A]
          Length = 121

 Score = 40.4 bits (93), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 46  EALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNS-YQDIID 104
           +AL +  R+W +F+    SE N  P EV+ N+ +IG++V+K+   ++ N   +    +ID
Sbjct: 49  KALLFNRRLWSIFMSAADSESNPQPLEVRQNIANIGVFVMKQTVDMQLNPDPAKLTALID 108

Query: 105 VISIVRDGL 113
           +   +  GL
Sbjct: 109 INCNLAAGL 117


>gi|83955106|ref|ZP_00963762.1| flaF protein [Sulfitobacter sp. NAS-14.1]
 gi|83840435|gb|EAP79608.1| flaF protein [Sulfitobacter sp. NAS-14.1]
          Length = 133

 Score = 40.4 bits (93), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 1/68 (1%)

Query: 46  EALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDV 105
           + L+   RVW+ F  DL  +DN L  +++  LIS+ LWV    + +     N  + +ID+
Sbjct: 57  DTLWENQRVWLTFKADLAEKDNGLTADLRAALISLALWVENHTKAVLSGSKN-VKPLIDI 115

Query: 106 ISIVRDGL 113
              + +GL
Sbjct: 116 NRSIINGL 123


>gi|114765256|ref|ZP_01444388.1| flaF protein [Pelagibaca bermudensis HTCC2601]
 gi|114542391|gb|EAU45419.1| flaF protein [Roseovarius sp. HTCC2601]
          Length = 145

 Score = 40.4 bits (93), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 54  VWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
           +W     DL  E+N LP E++ NL+SI +WV + C  +     +    +IDV   +  GL
Sbjct: 65  LWSRLRTDLTDENNQLPAELRANLLSIAMWVDRTCG-VVIGGGDGLPALIDVNQNILGGL 123


>gi|167646850|ref|YP_001684513.1| flagellar biosynthesis regulatory protein FlaF [Caulobacter sp.
           K31]
 gi|167349280|gb|ABZ72015.1| flagellar FlaF family protein [Caulobacter sp. K31]
          Length = 120

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 20/85 (23%), Positives = 44/85 (51%), Gaps = 1/85 (1%)

Query: 29  SLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKEC 88
           +L++ +     +    ++AL +  RVW     D    +N LP +++ ++IS+ LWV +  
Sbjct: 30  ALMAASEAPADDIATRIDALDWNRRVWSALATDCSLPENTLPVQLRASIISLSLWVGRHS 89

Query: 89  ERIRRNKSNSYQDIIDVISIVRDGL 113
             + R K   ++ +I++  ++  GL
Sbjct: 90  SAVMR-KEEDFEPLIEINRMIMQGL 113


>gi|222053750|ref|YP_002536112.1| flagellar FlaF family protein [Geobacter sp. FRC-32]
 gi|221563039|gb|ACM19011.1| flagellar FlaF family protein [Geobacter sp. FRC-32]
          Length = 128

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 59/113 (52%), Gaps = 4/113 (3%)

Query: 6   HETIQESSIECRKREHWILDRSISLLSIAHKS--LPN-SKQAVEALFYTSRVWVVFIQDL 62
           +  IQ+ ++  R+ E  +L R+  +L     +   P+  K+  EAL +  ++W  F  +L
Sbjct: 9   YANIQKEALTGRELEASVLTRAAQMLKHCQDNWNAPDREKKLQEALKFNQKIWSFFQAEL 68

Query: 63  VSEDNHLPQEVKLNLISIGLWVLKEC-ERIRRNKSNSYQDIIDVISIVRDGLK 114
              DN LP++++ +++S+ L+V K   E I   +S     +ID+   +  GL+
Sbjct: 69  SVPDNPLPKKLREDILSLSLFVDKRIFEIIAFPESEKLTIVIDINMNIAAGLR 121


>gi|197104849|ref|YP_002130226.1| Flagellar biosynthesis regulator FlaF [Phenylobacterium zucineum
           HLK1]
 gi|196478269|gb|ACG77797.1| Flagellar biosynthesis regulator FlaF [Phenylobacterium zucineum
           HLK1]
          Length = 104

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 1/85 (1%)

Query: 29  SLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKEC 88
           +L+  A     + K  ++AL +  RVW V   D     N LP+E++ ++IS+ +WV K  
Sbjct: 12  ALMEAAKLPADDLKGRMDALDWNRRVWSVLGADCQQTGNGLPRELRASIISLSIWVGKHT 71

Query: 89  ERIRRNKSNSYQDIIDVISIVRDGL 113
             + R +    + +I++  ++  GL
Sbjct: 72  SLVIRQQ-EEIEPLIEINRMIMQGL 95


>gi|75675299|ref|YP_317720.1| flagellar biosynthesis regulatory protein FlaF [Nitrobacter
           winogradskyi Nb-255]
 gi|74420169|gb|ABA04368.1| putative flagellar protein FlaF [Nitrobacter winogradskyi Nb-255]
          Length = 121

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 1/112 (0%)

Query: 3   QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDL 62
           Q Y  T Q SS         +L  +  L  +  K         +AL +  R+W +F+   
Sbjct: 6   QAYARTAQTSSSPREIEAQALLKAARQLREVQDKWEGPDNDMHKALLFNRRLWSIFMSAA 65

Query: 63  VSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNS-YQDIIDVISIVRDGL 113
            S+ N  P EV+ N+ +IG++V+K+   ++ N   +    +ID+   +  GL
Sbjct: 66  DSDSNPQPLEVRQNIANIGVFVMKQTVDMQLNPDPAKLTALIDINCNLAAGL 117


>gi|99082813|ref|YP_614967.1| flagellar biosynthesis regulatory protein FlaF [Ruegeria sp.
           TM1040]
 gi|99039093|gb|ABF65705.1| FlaF protein [Ruegeria sp. TM1040]
          Length = 123

 Score = 38.9 bits (89), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 2/100 (2%)

Query: 16  CRKREHWILDRSISLLSIA-HKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVK 74
            R  E+ IL R    + +A  K     K  V A+    ++W +F  DL  E N LP E+K
Sbjct: 21  ARNTEYEILARITHRMIVADSKGSDGFKDLVAAVSDNRKLWTLFTSDLAKEGNKLPTELK 80

Query: 75  LNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
             L  +  +  +   ++   K+ S Q ++++ + +  GL+
Sbjct: 81  QRLFHLARFTREHTSKVLARKA-SVQPLVEINTAIMRGLR 119


>gi|91976151|ref|YP_568810.1| flagellar biosynthesis regulatory protein FlaF [Rhodopseudomonas
          palustris BisB5]
 gi|91682607|gb|ABE38909.1| flagellar FlaF [Rhodopseudomonas palustris BisB5]
          Length = 122

 Score = 38.9 bits (89), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 14/43 (32%), Positives = 28/43 (65%)

Query: 46 EALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKEC 88
          EAL +  ++W +F+ D + +DN    E++ N+ +IG++VL + 
Sbjct: 50 EALMFNRKLWSIFVSDAMRDDNPQSIEIRQNIANIGVFVLSQS 92


>gi|315500093|ref|YP_004088896.1| flagellar flaf family protein [Asticcacaulis excentricus CB 48]
 gi|315418105|gb|ADU14745.1| flagellar FlaF family protein [Asticcacaulis excentricus CB 48]
          Length = 136

 Score = 38.5 bits (88), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 26/112 (23%), Positives = 54/112 (48%), Gaps = 3/112 (2%)

Query: 3   QYYHETIQESSIECRKREHWILDR-SISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQD 61
           Q Y +T Q S  + R+ E+ +  + + +L+  A        + ++AL +  R+W V   D
Sbjct: 4   QAYQKTAQRSE-DPRQTEYRLFGQVTRALMEAAELDRSEVSRRMDALDWNRRLWSVLGTD 62

Query: 62  LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
                N LP+ ++  ++S+ +WV +    + R +      +I+V  ++  GL
Sbjct: 63  CALPGNGLPETLRAQIVSLSIWVNRHTSAVMRGQ-EEIAPLIEVNRLIMQGL 113


>gi|163738068|ref|ZP_02145484.1| flagellar protein FlaF, putative [Phaeobacter gallaeciensis BS107]
 gi|161388684|gb|EDQ13037.1| flagellar protein FlaF, putative [Phaeobacter gallaeciensis BS107]
          Length = 123

 Score = 38.5 bits (88), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 19/85 (22%), Positives = 45/85 (52%), Gaps = 1/85 (1%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECE 89
           +++ A K  P   +   AL    ++W +F  ++ S  N LP E+K  L+S+G +  +   
Sbjct: 36  MVAAAQKGKPGFTELAAALTDNRKLWSIFSVEVASPGNPLPDELKAQLLSLGEFTHQHTS 95

Query: 90  RIRRNKSNSYQDIIDVISIVRDGLK 114
           ++   K++  + ++++ + +  GL+
Sbjct: 96  KVLARKAD-VRLLVEINTAIMRGLR 119


>gi|90423003|ref|YP_531373.1| flagellar biosynthesis regulatory protein FlaF [Rhodopseudomonas
          palustris BisB18]
 gi|90105017|gb|ABD87054.1| flagellar FlaF [Rhodopseudomonas palustris BisB18]
          Length = 121

 Score = 38.1 bits (87), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 13/46 (28%), Positives = 29/46 (63%)

Query: 47 ALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIR 92
          AL +  ++W +F+ D +S+ N     ++ N+ +IG++VL +C  ++
Sbjct: 50 ALIFNRKLWSIFVSDAISDANPEAIAIRQNIANIGIFVLTQCAALQ 95


>gi|316932810|ref|YP_004107792.1| flagellar FlaF family protein [Rhodopseudomonas palustris DX-1]
 gi|315600524|gb|ADU43059.1| flagellar FlaF family protein [Rhodopseudomonas palustris DX-1]
          Length = 122

 Score = 38.1 bits (87), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 18/69 (26%), Positives = 40/69 (57%), Gaps = 1/69 (1%)

Query: 46  EALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIR-RNKSNSYQDIID 104
           EAL +  ++W +F+ + + +DN    E++ N+ +IG++VL +   ++ + +    Q +ID
Sbjct: 50  EALMFNRKLWSIFVSEAMRDDNPQSIEIRQNIANIGVFVLSQSSALQIKPEVERLQALID 109

Query: 105 VISIVRDGL 113
           +   +  GL
Sbjct: 110 INRNIAAGL 118


>gi|163742536|ref|ZP_02149922.1| flagellar protein FlaF, putative [Phaeobacter gallaeciensis 2.10]
 gi|161384121|gb|EDQ08504.1| flagellar protein FlaF, putative [Phaeobacter gallaeciensis 2.10]
          Length = 88

 Score = 38.1 bits (87), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 19/85 (22%), Positives = 45/85 (52%), Gaps = 1/85 (1%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECE 89
           +++ A K  P   +   AL    ++W +F  ++ S  N LP E+K  L+S+G +  +   
Sbjct: 1   MVAAAQKGKPGFTELAAALTDNRKLWSIFSVEVASPGNPLPDELKAQLLSLGEFTHQHTS 60

Query: 90  RIRRNKSNSYQDIIDVISIVRDGLK 114
           ++   K++  + ++++ + +  GL+
Sbjct: 61  KVLARKAD-VRLLVEINTAIMRGLR 84


>gi|259418039|ref|ZP_05741958.1| flagellar biosynthesis regulatory protein FlaF [Silicibacter sp.
           TrichCH4B]
 gi|259346945|gb|EEW58759.1| flagellar biosynthesis regulatory protein FlaF [Silicibacter sp.
           TrichCH4B]
          Length = 123

 Score = 38.1 bits (87), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 2/100 (2%)

Query: 16  CRKREHWILDRSISLLSIAH-KSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVK 74
            R  E+ IL R    + +A+ K     K  V A+    ++W +F  DL  + N LP E+K
Sbjct: 21  ARNTEYEILARITHRMIVANGKGSDGFKDLVAAVSDNRKLWTLFTSDLAKDGNKLPDELK 80

Query: 75  LNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
             L  +  +  +   ++   K+ S Q ++++ + +  GL+
Sbjct: 81  QRLFHLARFTREHSSKVLARKA-SVQPLVEINTAIMRGLR 119


>gi|39936974|ref|NP_949250.1| flagellar biosynthesis regulatory protein FlaF [Rhodopseudomonas
           palustris CGA009]
 gi|192292802|ref|YP_001993407.1| flagellar biosynthesis regulatory protein FlaF [Rhodopseudomonas
           palustris TIE-1]
 gi|39650831|emb|CAE29354.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009]
 gi|192286551|gb|ACF02932.1| flagellar FlaF family protein [Rhodopseudomonas palustris TIE-1]
          Length = 122

 Score = 37.7 bits (86), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 17/69 (24%), Positives = 40/69 (57%), Gaps = 1/69 (1%)

Query: 46  EALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIR-RNKSNSYQDIID 104
           EAL +  ++W +F+ + + +DN    E++ N+ +IG++V+ +   ++ + +    Q +ID
Sbjct: 50  EALLFNRKLWSIFVTEAMRDDNPQSIEIRQNIANIGVFVMSQSSALQIKPEVERLQALID 109

Query: 105 VISIVRDGL 113
           +   +  GL
Sbjct: 110 INRNIAAGL 118


>gi|163744337|ref|ZP_02151697.1| flaF protein [Oceanibulbus indolifex HEL-45]
 gi|161381155|gb|EDQ05564.1| flaF protein [Oceanibulbus indolifex HEL-45]
          Length = 134

 Score = 37.4 bits (85), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 21/39 (53%)

Query: 46 EALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWV 84
          +AL+   R W     DL    N +P  +K +LISI LWV
Sbjct: 57 DALYENQRFWSALRYDLAEPGNTMPDALKASLISIALWV 95


>gi|254475812|ref|ZP_05089198.1| flagellar protein FlaF, putative [Ruegeria sp. R11]
 gi|214030055|gb|EEB70890.1| flagellar protein FlaF, putative [Ruegeria sp. R11]
          Length = 123

 Score = 37.4 bits (85), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 18/85 (21%), Positives = 48/85 (56%), Gaps = 1/85 (1%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECE 89
           +++ A K  P  K+ VEAL    ++W +F  ++ + +N LP+++K  L+ +  +  +   
Sbjct: 36  MVAAAQKGRPGFKELVEALKDNRKLWSIFADEVANPENPLPEDLKSQLLYLREFTNQHTS 95

Query: 90  RIRRNKSNSYQDIIDVISIVRDGLK 114
           ++   K++  + ++++ + +  GL+
Sbjct: 96  KVMARKAD-VRMLVEINTAIMRGLR 119


>gi|254465480|ref|ZP_05078891.1| flagellar protein FlaF, putative [Rhodobacterales bacterium Y4I]
 gi|206686388|gb|EDZ46870.1| flagellar protein FlaF, putative [Rhodobacterales bacterium Y4I]
          Length = 123

 Score = 37.4 bits (85), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 19/85 (22%), Positives = 43/85 (50%), Gaps = 1/85 (1%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECE 89
           L++ A K      +  +AL    ++W +F  DL  + N LP  +K NL  +  +  +   
Sbjct: 36  LITAAQKGSDGFNELAQALNDNRKLWSIFTADLAMKSNPLPDNLKQNLFELAEFTRQHTS 95

Query: 90  RIRRNKSNSYQDIIDVISIVRDGLK 114
           ++ + K+N  + ++++ + +  GL+
Sbjct: 96  KVLQRKAN-VRPLVEINTAILRGLR 119


>gi|86750907|ref|YP_487403.1| flagellar biosynthesis regulatory protein FlaF [Rhodopseudomonas
          palustris HaA2]
 gi|86573935|gb|ABD08492.1| Flagellar FlaF [Rhodopseudomonas palustris HaA2]
          Length = 122

 Score = 37.0 bits (84), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 13/42 (30%), Positives = 27/42 (64%)

Query: 47 ALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKEC 88
          AL +  ++W +F+ D + +DN    E++ N+ +IG++VL + 
Sbjct: 51 ALMFNRKLWSIFVSDAMRDDNPQTLEIRQNIANIGVFVLSQS 92


>gi|27380953|ref|NP_772482.1| flagellar biosynthesis regulatory protein FlaF [Bradyrhizobium
           japonicum USDA 110]
 gi|27354119|dbj|BAC51107.1| bll5842 [Bradyrhizobium japonicum USDA 110]
          Length = 122

 Score = 37.0 bits (84), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 16/76 (21%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 39  PNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKS-N 97
           P S+Q ++AL +  ++W +F+ + + ++N  P +V+  + +I ++VL +   ++ +   +
Sbjct: 43  PLSEQTMQALMFNRKLWTIFLSEAMRDNNPQPIDVRQKIANISVFVLSQTAALQMSPQFD 102

Query: 98  SYQDIIDVISIVRDGL 113
            ++ +I++   +  GL
Sbjct: 103 HFRPLIEINRNIAAGL 118


>gi|144897700|emb|CAM74564.1| Flagellar FlaF [Magnetospirillum gryphiswaldense MSR-1]
          Length = 145

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 16/64 (25%), Positives = 37/64 (57%)

Query: 17 RKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLN 76
          R+ E W L  +   +S+A K    ++  + A+    R+W +F  +L  E++ LP +++++
Sbjct: 21 RQTEAWALTEAARRMSLAQKEGVATEDLLVAVRLNWRLWTIFQAELSGEESALPDQMRMD 80

Query: 77 LISI 80
          ++S+
Sbjct: 81 MLSL 84


>gi|83594188|ref|YP_427940.1| putative flagellar protein FlaF [Rhodospirillum rubrum ATCC
          11170]
 gi|83577102|gb|ABC23653.1| putative flagellar protein FlaF [Rhodospirillum rubrum ATCC
          11170]
          Length = 104

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 36 KSLPNSKQAV-EALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWV 84
          ++ PN K A  +AL +   +W +   D+    N LP E+K N++S+ L+V
Sbjct: 14 RTKPNDKTAFSQALRFNHLLWTIIQADITEPANTLPPELKANIMSLSLFV 63


>gi|115523546|ref|YP_780457.1| flagellar biosynthesis regulatory protein FlaF [Rhodopseudomonas
           palustris BisA53]
 gi|115517493|gb|ABJ05477.1| flagellar FlaF family protein [Rhodopseudomonas palustris BisA53]
          Length = 121

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 18/69 (26%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 46  EALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIR-RNKSNSYQDIID 104
           EAL +  ++W +F+ D + ++N    E++ N+ +IG++VL +   +  + +    Q +ID
Sbjct: 49  EALMFNRKLWSLFVSDALRDENPESIEIRQNIANIGIFVLTQSAALALKPEVERLQALID 108

Query: 105 VISIVRDGL 113
           +   +  GL
Sbjct: 109 INRNIAAGL 117


>gi|304321142|ref|YP_003854785.1| flagellar protein FlaF [Parvularcula bermudensis HTCC2503]
 gi|303300044|gb|ADM09643.1| flagellar protein FlaF, putative [Parvularcula bermudensis
          HTCC2503]
          Length = 127

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 20/84 (23%), Positives = 45/84 (53%), Gaps = 1/84 (1%)

Query: 3  QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNS-KQAVEALFYTSRVWVVFIQD 61
          ++ +  +++S+   R+ E  +L +  + ++ A  S P   ++ V A+     +W   I D
Sbjct: 6  EHGYAQVRKSTASGREVEIQLLTKIAAEMANADPSTPEGFRELVTAVHRNMEMWTALIVD 65

Query: 62 LVSEDNHLPQEVKLNLISIGLWVL 85
          L+ E+N + Q +K+ L+ +G + L
Sbjct: 66 LLQEENKIDQTLKVGLLKLGQFSL 89


>gi|288962698|ref|YP_003452992.1| FliL protein [Azospirillum sp. B510]
 gi|288914964|dbj|BAI76448.1| FliL protein [Azospirillum sp. B510]
          Length = 132

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 1/93 (1%)

Query: 5  YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64
          YH+TI E   + RK E+ +  R    L     +   S    +AL+    +W     DL+ 
Sbjct: 6  YHQTIAECD-DPRKIEYRVFLRITLALEQNRDADWRSAALKDALWRNLELWNALRADLLE 64

Query: 65 EDNHLPQEVKLNLISIGLWVLKECERIRRNKSN 97
          + N LP+ ++  L+S+   V +  +R+ R +  
Sbjct: 65 DGNALPEALRAGLVSLSFAVNRNTQRVLRGEGG 97


>gi|149912825|ref|ZP_01901359.1| flagellar protein FlaF, putative [Roseobacter sp. AzwK-3b]
 gi|149813231|gb|EDM73057.1| flagellar protein FlaF, putative [Roseobacter sp. AzwK-3b]
          Length = 124

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 23/98 (23%), Positives = 46/98 (46%), Gaps = 1/98 (1%)

Query: 17  RKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLN 76
           R  E+    R    L+ A K+  +  +   AL+   R+W++   D+  + N LP ++K  
Sbjct: 22  RDTEYDAFARVTRRLTAAAKTPGDVPELAAALYDNRRLWMILASDVALKSNPLPGDLKAR 81

Query: 77  LISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           LI +  +      ++   K+ + + +I+V   V  GL+
Sbjct: 82  LIYLAEFAEVHGRKVLAGKATA-EPLIEVNRAVMQGLQ 118


>gi|145529632|ref|XP_001450599.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124418221|emb|CAK83202.1| unnamed protein product [Paramecium tetraurelia]
          Length = 315

 Score = 35.8 bits (81), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 16/74 (21%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
           YY   I+++S  C  ++  IL +    LS+  KSLPN  QA   LF   RV         
Sbjct: 240 YY---IEDNSCSCNSKKKGILKQHKIPLSLTSKSLPNKTQAKSKLFKKKRV--------- 287

Query: 64  SEDNHLPQEVKLNL 77
               H  QE   N 
Sbjct: 288 ----HFSQETNFNF 297


>gi|302383513|ref|YP_003819336.1| flagellar FlaF family protein [Brevundimonas subvibrioides ATCC
           15264]
 gi|302194141|gb|ADL01713.1| flagellar FlaF family protein [Brevundimonas subvibrioides ATCC
           15264]
          Length = 120

 Score = 35.0 bits (79), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 42  KQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQD 101
           K  ++AL +  R+W V   D     N L   ++  +ISI L+V +    I R + + ++ 
Sbjct: 42  KTRIDALDWNRRLWSVLATDCSDPSNQLNTPLRAQIISISLFVGRHSSAIMRGEED-FEA 100

Query: 102 IIDVISIVRDGL 113
           +ID+   +  GL
Sbjct: 101 LIDINRSIMQGL 112


>gi|260429492|ref|ZP_05783469.1| flagellar biosynthesis regulatory protein FlaF [Citreicella sp.
          SE45]
 gi|260420115|gb|EEX13368.1| flagellar biosynthesis regulatory protein FlaF [Citreicella sp.
          SE45]
          Length = 125

 Score = 35.0 bits (79), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%)

Query: 17 RKREHWILDRSISLLSIAHKSLPNS-KQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKL 75
          R  E+ +  R    +  A ++ P +  Q VEAL+   R+W     D+    N LPQE++ 
Sbjct: 22 RATEYDLFARVTHRIKAAAEAGPKAYPQLVEALYDNRRLWTTLAVDVADPSNKLPQELRA 81

Query: 76 NLISIGLWV 84
           +  +  +V
Sbjct: 82 QIFYLSEFV 90


>gi|118581735|ref|YP_902985.1| flagellar biosynthesis regulatory protein FlaF [Pelobacter
          propionicus DSM 2379]
 gi|118504445|gb|ABL00928.1| flagellar FlaF family protein [Pelobacter propionicus DSM 2379]
          Length = 127

 Score = 34.7 bits (78), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 14/41 (34%), Positives = 27/41 (65%)

Query: 46 EALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLK 86
          EA+ Y  +VW  F  +L   DN LPQ+++ +++++ L++ K
Sbjct: 51 EAIRYNQKVWSFFQSELSMPDNPLPQKLREDILNLSLFIDK 91


>gi|91080763|ref|XP_967505.1| PREDICTED: similar to otopetrin [Tribolium castaneum]
 gi|270005880|gb|EFA02328.1| hypothetical protein TcasGA2_TC007996 [Tribolium castaneum]
          Length = 701

 Score = 34.7 bits (78), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 3/72 (4%)

Query: 36  KSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECE---RIR 92
           K L N   ++ ALF  +   VV+I D++ E N L +   L L+ I L  +       ++ 
Sbjct: 132 KHLTNILSSMYALFVVTLGLVVYISDVILESNPLAETFSLYLVVIALIFILYLTVDVKLY 191

Query: 93  RNKSNSYQDIID 104
            NK N Y D+++
Sbjct: 192 VNKKNKYNDLLE 203


>gi|254294686|ref|YP_003060709.1| flagellar FlaF family protein [Hirschia baltica ATCC 49814]
 gi|254043217|gb|ACT60012.1| flagellar FlaF family protein [Hirschia baltica ATCC 49814]
          Length = 134

 Score = 34.7 bits (78), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 45  VEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIID 104
           V++L    +VW     D     N LP +++  +IS+ L+V +      RN+S   + +ID
Sbjct: 46  VKSLDKNRQVWNAMAMDCAQPGNALPDDLRAGIISLSLFVNRHTSEASRNRS-EIETLID 104

Query: 105 VISIVRDGL 113
           +   +  GL
Sbjct: 105 INRNIMQGL 113


>gi|148256807|ref|YP_001241392.1| flagellar biosynthesis regulatory protein FlaF [Bradyrhizobium
          sp. BTAi1]
 gi|146408980|gb|ABQ37486.1| hypothetical protein BBta_5526 [Bradyrhizobium sp. BTAi1]
          Length = 96

 Score = 34.3 bits (77), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 13/43 (30%), Positives = 27/43 (62%)

Query: 46 EALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKEC 88
          +AL +  R+W +F+  +   DN    E++ N+ +IG++V+K+ 
Sbjct: 24 KALLFNRRLWTIFMSAVEMNDNPNSIEIRQNIANIGVFVMKQT 66


Searching..................................................done


Results from round 2




>gi|254780522|ref|YP_003064935.1| flagellar biosynthesis regulatory protein FlaF [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254040199|gb|ACT56995.1| flagellar biosynthesis regulatory protein FlaF [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 114

 Score =  163 bits (413), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 114/114 (100%), Positives = 114/114 (100%)

Query: 1   MRQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQ 60
           MRQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQ
Sbjct: 1   MRQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQ 60

Query: 61  DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK
Sbjct: 61  DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114


>gi|116250503|ref|YP_766341.1| flagellar biosynthesis regulatory protein FlaF [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115255151|emb|CAK06225.1| putative flagellar synthesis related protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 115

 Score =  162 bits (409), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 62/115 (53%), Positives = 86/115 (74%), Gaps = 1/115 (0%)

Query: 1   MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M Q+ Y E +Q+S  + ++RE  +LDRSI LLS+A +     ++A+EALFYT RVW+ FI
Sbjct: 1   MYQFSYAEVMQDSVADAKEREWQVLDRSIDLLSLAREKEKYGREAIEALFYTRRVWISFI 60

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +DL   DN L  E++ NLISI +W+LKEC+RIR+ +SN+YQ IIDV +I+RDGLK
Sbjct: 61  EDLKHPDNQLEIELRANLISIAIWILKECDRIRKRQSNNYQGIIDVTTIIRDGLK 115


>gi|241203127|ref|YP_002974223.1| flagellar biosynthesis regulatory protein FlaF [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240857017|gb|ACS54684.1| flagellar FlaF family protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 115

 Score =  161 bits (408), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 60/115 (52%), Positives = 84/115 (73%), Gaps = 1/115 (0%)

Query: 1   MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M Q+ Y E +Q+S  + ++RE  +LDRSI LL+ A +     ++A+EALFYT RVW+ FI
Sbjct: 1   MYQFSYAEVMQDSVADAKEREWQVLDRSIDLLAAAREKEKYGREAIEALFYTRRVWISFI 60

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +DL   DN L   ++ NLISI +W+LKEC+RIR+ +SN+YQ IIDV +I+RDGLK
Sbjct: 61  EDLKHPDNQLEIGLRANLISIAIWILKECDRIRKRQSNNYQGIIDVTTIIRDGLK 115


>gi|222147592|ref|YP_002548549.1| flagellar biosynthesis regulatory protein FlaF [Agrobacterium vitis
           S4]
 gi|221734580|gb|ACM35543.1| FLAF protein [Agrobacterium vitis S4]
          Length = 115

 Score =  161 bits (407), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 58/115 (50%), Positives = 84/115 (73%), Gaps = 1/115 (0%)

Query: 1   MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M Q+ Y+E +++   + ++RE  +LDRSI LLS A  +    ++ +EAL+YT RVW+ FI
Sbjct: 1   MYQFSYNEIMEDGVADAKERERQVLDRSIDLLSQAKTAGKYGREGIEALYYTRRVWIRFI 60

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +DL   DN L  E++ NLISI LW+LKEC+RIR+ +S++YQ IIDV +I+RDGLK
Sbjct: 61  EDLKQPDNQLGTELRANLISIALWILKECDRIRKRESDNYQGIIDVTTIIRDGLK 115


>gi|190890385|ref|YP_001976927.1| flagellin synthesis regulator protein [Rhizobium etli CIAT 652]
 gi|190695664|gb|ACE89749.1| flagellin synthesis regulator protein [Rhizobium etli CIAT 652]
 gi|327193062|gb|EGE59974.1| flagellin synthesis regulator protein [Rhizobium etli CNPAF512]
          Length = 115

 Score =  160 bits (406), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 60/115 (52%), Positives = 84/115 (73%), Gaps = 1/115 (0%)

Query: 1   MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M Q+ Y E +Q+S  + ++RE  +LDRSI LL++A       ++A+EALFYT RVW+ FI
Sbjct: 1   MYQFSYAEVMQDSVADAKEREWQVLDRSIELLALARDKDKYGREAIEALFYTRRVWISFI 60

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +DL   DN L  +++ NLISI +W+LKEC+RIR+  SN+YQ IIDV +I+RDGLK
Sbjct: 61  EDLKHPDNQLDVQLRANLISIAIWILKECDRIRKRLSNNYQGIIDVTTIIRDGLK 115


>gi|86356333|ref|YP_468225.1| flagellar biosynthesis regulatory protein FlaF [Rhizobium etli CFN
           42]
 gi|218671598|ref|ZP_03521268.1| flagellar biosynthesis regulatory protein FlaF [Rhizobium etli
           GR56]
 gi|86280435|gb|ABC89498.1| flagellin synthesis regulator protein [Rhizobium etli CFN 42]
          Length = 115

 Score =  160 bits (406), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 61/115 (53%), Positives = 84/115 (73%), Gaps = 1/115 (0%)

Query: 1   MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M Q+ Y E +Q+S  + ++RE  +LDRSI LLS+A       ++A+EALFYT RVW+ FI
Sbjct: 1   MYQFSYAEVMQDSVADAKEREWQVLDRSIELLSLARDKEKYGREAIEALFYTRRVWISFI 60

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +DL   DN L  +++ NLISI +W+LKEC+RIR+  SN+YQ IIDV +I+RDGLK
Sbjct: 61  EDLKHPDNQLDVQLRANLISIAIWILKECDRIRKRLSNNYQGIIDVTTIIRDGLK 115


>gi|209547949|ref|YP_002279866.1| flagellar biosynthesis regulatory protein FlaF [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209533705|gb|ACI53640.1| flagellar FlaF family protein [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 115

 Score =  160 bits (405), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 62/115 (53%), Positives = 85/115 (73%), Gaps = 1/115 (0%)

Query: 1   MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M Q+ Y E +Q+S  + ++RE  +LDRSI LLS+A +     ++A+EALFYT RVW+ FI
Sbjct: 1   MYQFSYAEVMQDSVADAKEREWQVLDRSIDLLSLAREKEKYGREAIEALFYTRRVWISFI 60

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +DL   DN L  E++ NLISI +W+LKEC+RIR+  SN+YQ IIDV +I+RDGLK
Sbjct: 61  EDLKHPDNQLEIELRANLISIAIWILKECDRIRKRLSNNYQGIIDVTTIIRDGLK 115


>gi|218462422|ref|ZP_03502513.1| flagellar biosynthesis regulatory protein FlaF [Rhizobium etli Kim
           5]
          Length = 115

 Score =  160 bits (405), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 60/115 (52%), Positives = 84/115 (73%), Gaps = 1/115 (0%)

Query: 1   MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M Q+ Y E +Q+S  + ++RE  +LDRSI LL++A       ++A+EALFYT RVW+ FI
Sbjct: 1   MYQFSYAEVMQDSVADAKEREWQVLDRSIELLALARDKEKYGREAIEALFYTRRVWISFI 60

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +DL   DN L  +++ NLISI +W+LKEC+RIR+  SN+YQ IIDV +I+RDGLK
Sbjct: 61  EDLKHPDNQLDVQLRANLISIAIWILKECDRIRKRLSNNYQGIIDVTTIIRDGLK 115


>gi|222084888|ref|YP_002543417.1| flagellin synthesis regulator protein [Agrobacterium radiobacter
           K84]
 gi|221722336|gb|ACM25492.1| flagellin synthesis regulator protein [Agrobacterium radiobacter
           K84]
          Length = 115

 Score =  158 bits (400), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 63/115 (54%), Positives = 85/115 (73%), Gaps = 1/115 (0%)

Query: 1   MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M Q+ Y E +Q++  + ++RE  +LDRSI+LL+ A       ++A+EALFYT RVWV FI
Sbjct: 1   MYQFSYAEVMQDAVADAKERERQVLDRSITLLAAARDKEKYGREAIEALFYTRRVWVSFI 60

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +DL S DN L  E++ NLISI LW+LKEC+RIRR +S +YQ IIDV +I+RDGLK
Sbjct: 61  EDLKSPDNQLNVELRANLISIALWILKECDRIRRRQSENYQGIIDVTTIIRDGLK 115


>gi|114706625|ref|ZP_01439526.1| flagellar protein flaF [Fulvimarina pelagi HTCC2506]
 gi|114538017|gb|EAU41140.1| flagellar protein flaF [Fulvimarina pelagi HTCC2506]
          Length = 115

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 49/114 (42%), Positives = 78/114 (68%), Gaps = 1/114 (0%)

Query: 1   MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M Q+ Y E  Q+++++ R+RE    D SI+LL  A KS P S+ A+EA++ T  +W + +
Sbjct: 1   MYQFSYAEVAQDTAVDARERERQAFDHSIALLEKAEKSGPRSRDAIEAIYITRSLWSILV 60

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
           +DL S DN LP+E++  LISIGLW++ E E IR  KS +++ I+++  ++RDGL
Sbjct: 61  EDLGSADNGLPEELRAELISIGLWIMSEAEAIRVGKSTNFKGIVEITRLIRDGL 114


>gi|110632637|ref|YP_672845.1| flagellar biosynthesis regulatory protein FlaF [Mesorhizobium sp.
           BNC1]
 gi|110283621|gb|ABG61680.1| flagellar FlaF [Chelativorans sp. BNC1]
          Length = 115

 Score =  154 bits (390), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 47/115 (40%), Positives = 80/115 (69%), Gaps = 1/115 (0%)

Query: 1   MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M Q+ Y E + +S  + + RE  +L RSI LL+ A ++ P S++A+EA+ + +RVW   +
Sbjct: 1   MYQFSYSEVLSDSVADAKDRERQLLTRSIDLLTQAREAGPRSREAIEAILFMNRVWTSLV 60

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +DL    N LP+E++ NLISIGLW+L+E E +R+ +S+++  +I++  I+RDGL+
Sbjct: 61  EDLGDPGNALPKELRANLISIGLWLLREGEEVRQGRSDNFDGLIEISQIIRDGLR 115


>gi|319781662|ref|YP_004141138.1| flagellar FlaF family protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317167550|gb|ADV11088.1| flagellar FlaF family protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 115

 Score =  151 bits (381), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 50/115 (43%), Positives = 80/115 (69%), Gaps = 1/115 (0%)

Query: 1   MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M Q+ Y +    S  + + RE  +L RSI +L+ A  +   S +A+EAL +T+RVW  F+
Sbjct: 1   MYQFSYADIQSNSVADAKDRERELLTRSIDMLAAAAVAGHGSMEAIEALHFTNRVWTAFV 60

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +DL S DN LP+E++ NLISIGLW+L+E E IR+ ++N+++ +I+V  I+RDG++
Sbjct: 61  EDLGSSDNALPKELRANLISIGLWLLREAEDIRQGRTNNFEGLIEVSQIIRDGIQ 115


>gi|325291965|ref|YP_004277829.1| flagellar biosynthesis regulatory protein FlaF [Agrobacterium sp.
           H13-3]
 gi|325059818|gb|ADY63509.1| flagellar biosynthesis regulatory protein FlaF [Agrobacterium sp.
           H13-3]
          Length = 114

 Score =  150 bits (379), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 54/115 (46%), Positives = 77/115 (66%), Gaps = 2/115 (1%)

Query: 1   MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M Q+ Y E +++   + + RE   L +SI LL  A  S  + +  +EALFYT RVW+ FI
Sbjct: 1   MYQFSYAEIMEDGVADAKDRERQALTKSIDLLVEAKDS-SSQRHTIEALFYTRRVWIRFI 59

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +DL   +N L  E++ NLISI +W+LKECE IR+ +S ++Q IIDV +I+RDGLK
Sbjct: 60  EDLKQPENQLAMELRANLISIAIWILKECELIRKRQSTNFQGIIDVTTIIRDGLK 114


>gi|315122287|ref|YP_004062776.1| flagellar biosynthesis regulatory protein FlaF [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313495689|gb|ADR52288.1| flagellar biosynthesis regulatory protein FlaF [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 114

 Score =  150 bits (379), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 86/114 (75%), Positives = 102/114 (89%)

Query: 1   MRQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQ 60
           MRQYY+E +QESS+E RKRE WIL++SISLLS A +S PNS++ VEAL+YT+RVWVVFIQ
Sbjct: 1   MRQYYNEIVQESSVESRKREFWILNKSISLLSSAQQSKPNSREVVEALYYTNRVWVVFIQ 60

Query: 61  DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           DLVSE N L +EVKLNLISIGLW+L+ECERIRRN+SN+YQ IIDV S+VRDGLK
Sbjct: 61  DLVSESNQLTEEVKLNLISIGLWILEECERIRRNESNNYQAIIDVTSVVRDGLK 114


>gi|239834424|ref|ZP_04682752.1| flagellar biosynthesis regulatory protein FlaF [Ochrobactrum
           intermedium LMG 3301]
 gi|239822487|gb|EEQ94056.1| flagellar biosynthesis regulatory protein FlaF [Ochrobactrum
           intermedium LMG 3301]
          Length = 114

 Score =  150 bits (379), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 45/114 (39%), Positives = 77/114 (67%), Gaps = 1/114 (0%)

Query: 1   MRQ-YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M Q  Y + + +     R+RE  + DRSI++L +A ++   S++ ++A ++T+++W   I
Sbjct: 1   MYQMRYEDVMTDDMASARERERTLFDRSIAMLELAKENGSGSREGIDATYFTTKLWTTII 60

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
            DL SE+N LP+E+K  +IS+G++VLKE ERIR+ +SN Y  +I++   +RDGL
Sbjct: 61  DDLGSEENVLPKELKAAIISVGIFVLKEIERIRQGESNDYATLIEITQSIRDGL 114


>gi|260466600|ref|ZP_05812788.1| flagellar FlaF family protein [Mesorhizobium opportunistum WSM2075]
 gi|259029606|gb|EEW30894.1| flagellar FlaF family protein [Mesorhizobium opportunistum WSM2075]
          Length = 115

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 51/115 (44%), Positives = 81/115 (70%), Gaps = 1/115 (0%)

Query: 1   MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M Q+ Y +    S  + + RE  +L RSI +LS A  +  +S +AVEAL +T+RVW  F+
Sbjct: 1   MYQFSYADVQSTSVSDAKDRERELLTRSIDMLSAAAAAGQDSMEAVEALHFTNRVWTTFV 60

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +DL S DN LP+E++ NLISIGLW+L+E E IR+ ++++++ +I+V  I+RDG++
Sbjct: 61  EDLGSSDNALPKELRANLISIGLWLLREAEDIRQGRTDNFEGLIEVSQIIRDGIQ 115


>gi|153011505|ref|YP_001372719.1| flagellar biosynthesis regulatory protein FlaF [Ochrobactrum
           anthropi ATCC 49188]
 gi|151563393|gb|ABS16890.1| flagellar FlaF family protein [Ochrobactrum anthropi ATCC 49188]
          Length = 114

 Score =  149 bits (376), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 45/114 (39%), Positives = 76/114 (66%), Gaps = 1/114 (0%)

Query: 1   MRQ-YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M Q  Y + + +     ++RE  + DRSI++L  A  +   S++A++A ++T+++W   I
Sbjct: 1   MYQMRYEDVMNDDMASAKERERALFDRSIAMLEAAKANGSGSREAIDAAYFTTKLWTTII 60

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
            DL SE+N LP+E+K  +IS+G++VLKE ERIR+ +SN Y  +I++   +RDGL
Sbjct: 61  DDLGSEENVLPKELKAAIISVGIFVLKEIERIRQGESNDYATLIEITQSIRDGL 114


>gi|15887922|ref|NP_353603.1| flagellar biosynthesis regulatory protein FlaF [Agrobacterium
           tumefaciens str. C58]
 gi|15155518|gb|AAK86388.1| FLAF protein [Agrobacterium tumefaciens str. C58]
          Length = 114

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 55/115 (47%), Positives = 77/115 (66%), Gaps = 2/115 (1%)

Query: 1   MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M Q+ Y E +++     + RE   L +SI LL  A  S  + + ++EALFYT RVW+ FI
Sbjct: 1   MYQFSYAEIMEDGVANAKDRERQALTKSIDLLVEARDS-SSQRHSIEALFYTRRVWIRFI 59

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +DL   DN L  E++ NLISI +W+LKECE IR+ +S ++Q IIDV +I+RDGLK
Sbjct: 60  EDLKQPDNQLAMELRANLISIAIWILKECELIRKRQSTNFQGIIDVTTIIRDGLK 114


>gi|13472595|ref|NP_104162.1| flagellar biosynthesis regulatory protein FlaF [Mesorhizobium loti
           MAFF303099]
 gi|14023341|dbj|BAB49948.1| flagellar protein; FlaF [Mesorhizobium loti MAFF303099]
          Length = 115

 Score =  148 bits (374), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 51/115 (44%), Positives = 82/115 (71%), Gaps = 1/115 (0%)

Query: 1   MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M Q+ Y +    S  + + RE  +L RSI +LS A  +  +S +A+EAL +T+RVW +F+
Sbjct: 1   MYQFSYADVQSTSVSDAKDRERELLTRSIDMLSAAAAAGQDSMEAIEALNFTNRVWTIFV 60

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +DL S DN LP+E++ NLISIGLW+L+E E IR+ ++N+++ +I+V  I+RDG++
Sbjct: 61  EDLGSSDNALPKELRANLISIGLWLLREAEDIRQGRTNNFEGLIEVSQIIRDGIQ 115


>gi|90418362|ref|ZP_01226274.1| flagellar protein FlaF [Aurantimonas manganoxydans SI85-9A1]
 gi|90338034|gb|EAS51685.1| flagellar protein FlaF [Aurantimonas manganoxydans SI85-9A1]
          Length = 115

 Score =  146 bits (369), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 48/115 (41%), Positives = 75/115 (65%), Gaps = 1/115 (0%)

Query: 1   MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M Q+ Y E  Q+  ++ R+RE   LD SI  L  A    P S+ A+EA++ T  +W + I
Sbjct: 1   MYQFSYAEVAQDIEVDARERERQALDHSIEQLKKADAEGPRSRAAIEAIYTTRSLWALVI 60

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +DL S DN LP+ ++  LISIGLW+++E E IR  KS +++ II++ +++R+GLK
Sbjct: 61  EDLASADNGLPEALRAELISIGLWIMREAEAIRLGKSENFKGIIEITTLIREGLK 115


>gi|225628426|ref|ZP_03786460.1| Protein flaF [Brucella ceti str. Cudo]
 gi|254706499|ref|ZP_05168327.1| flagellar biosynthesis regulatory protein FlaF [Brucella
           pinnipedialis M163/99/10]
 gi|254711216|ref|ZP_05173027.1| flagellar biosynthesis regulatory protein FlaF [Brucella
           pinnipedialis B2/94]
 gi|254711815|ref|ZP_05173626.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti
           M644/93/1]
 gi|254714884|ref|ZP_05176695.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti
           M13/05/1]
 gi|256030155|ref|ZP_05443769.1| flagellar biosynthesis regulatory protein FlaF [Brucella
           pinnipedialis M292/94/1]
 gi|256158334|ref|ZP_05456238.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti
           M490/95/1]
 gi|256252732|ref|ZP_05458268.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti
           B1/94]
 gi|260166793|ref|ZP_05753604.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. F5/99]
 gi|261216574|ref|ZP_05930855.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti
           M13/05/1]
 gi|261219810|ref|ZP_05934091.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti
           B1/94]
 gi|261313953|ref|ZP_05953150.1| flagellar biosynthesis regulatory protein FlaF [Brucella
           pinnipedialis M163/99/10]
 gi|261318807|ref|ZP_05958004.1| flagellar biosynthesis regulatory protein FlaF [Brucella
           pinnipedialis B2/94]
 gi|261319444|ref|ZP_05958641.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti
           M644/93/1]
 gi|261756170|ref|ZP_05999879.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. F5/99]
 gi|265987186|ref|ZP_06099743.1| flagellar biosynthesis regulatory protein FlaF [Brucella
           pinnipedialis M292/94/1]
 gi|265996849|ref|ZP_06109406.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti
           M490/95/1]
 gi|225616272|gb|EEH13320.1| Protein flaF [Brucella ceti str. Cudo]
 gi|260918394|gb|EEX85047.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti
           B1/94]
 gi|260921663|gb|EEX88231.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti
           M13/05/1]
 gi|261292134|gb|EEX95630.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti
           M644/93/1]
 gi|261298030|gb|EEY01527.1| flagellar biosynthesis regulatory protein FlaF [Brucella
           pinnipedialis B2/94]
 gi|261302979|gb|EEY06476.1| flagellar biosynthesis regulatory protein FlaF [Brucella
           pinnipedialis M163/99/10]
 gi|261736154|gb|EEY24150.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. F5/99]
 gi|262551146|gb|EEZ07307.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti
           M490/95/1]
 gi|264659383|gb|EEZ29644.1| flagellar biosynthesis regulatory protein FlaF [Brucella
           pinnipedialis M292/94/1]
          Length = 114

 Score =  146 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 45/114 (39%), Positives = 76/114 (66%), Gaps = 1/114 (0%)

Query: 1   MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M Q  Y + + +     ++RE  + DRSI++L +A  +   S++ ++A ++TS++W   I
Sbjct: 1   MYQLRYEDVMNDDMASAKERERMLFDRSIAMLEVARANGAESREGIDAAYFTSKLWTTII 60

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
            DL SE+N LP+E++  +ISIG++VLKE ERIR+ +SN Y  +I++   +RDGL
Sbjct: 61  DDLGSEENALPKELRAAIISIGIFVLKEIERIRQGESNDYATLIEITQSIRDGL 114


>gi|23500851|ref|NP_700291.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis 1330]
 gi|62317954|ref|YP_223807.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
           bv. 1 str. 9-941]
 gi|83269931|ref|YP_419222.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis
           biovar Abortus 2308]
 gi|148558679|ref|YP_001258001.1| flagellar biosynthesis regulatory protein FlaF [Brucella ovis ATCC
           25840]
 gi|161621179|ref|YP_001595065.1| flagellar biosynthesis regulatory protein FlaF [Brucella canis ATCC
           23365]
 gi|163845454|ref|YP_001623109.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis ATCC
           23445]
 gi|189023205|ref|YP_001932946.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
           S19]
 gi|225686882|ref|YP_002734854.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis
           ATCC 23457]
 gi|237817499|ref|ZP_04596490.1| Protein flaF [Brucella abortus str. 2308 A]
 gi|254691614|ref|ZP_05154868.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
           bv. 6 str. 870]
 gi|254695090|ref|ZP_05156918.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
           bv. 3 str. Tulya]
 gi|254698186|ref|ZP_05160014.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|254699259|ref|ZP_05161087.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis bv. 5
           str. 513]
 gi|254702380|ref|ZP_05164208.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis bv. 3
           str. 686]
 gi|254720776|ref|ZP_05182587.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. 83/13]
 gi|254731631|ref|ZP_05190209.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
           bv. 4 str. 292]
 gi|256015895|ref|YP_003105904.1| flagellar biosynthesis regulatory protein FlaF [Brucella microti
           CCM 4915]
 gi|256059807|ref|ZP_05450002.1| flagellar biosynthesis regulatory protein FlaF [Brucella neotomae
           5K33]
 gi|256112179|ref|ZP_05453100.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis
           bv. 3 str. Ether]
 gi|256256801|ref|ZP_05462337.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
           bv. 9 str. C68]
 gi|256261981|ref|ZP_05464513.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis
           bv. 2 str. 63/9]
 gi|260544139|ref|ZP_05819960.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
           NCTC 8038]
 gi|260568717|ref|ZP_05839186.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis bv. 4
           str. 40]
 gi|260757245|ref|ZP_05869593.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
           bv. 6 str. 870]
 gi|260759390|ref|ZP_05871738.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
           bv. 4 str. 292]
 gi|260762633|ref|ZP_05874965.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260883049|ref|ZP_05894663.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
           bv. 9 str. C68]
 gi|261215441|ref|ZP_05929722.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
           bv. 3 str. Tulya]
 gi|261323787|ref|ZP_05962984.1| flagellar biosynthesis regulatory protein FlaF [Brucella neotomae
           5K33]
 gi|261749699|ref|ZP_05993408.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis bv. 5
           str. 513]
 gi|261752943|ref|ZP_05996652.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis bv. 3
           str. 686]
 gi|265985834|ref|ZP_06098569.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. 83/13]
 gi|265993606|ref|ZP_06106163.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis
           bv. 3 str. Ether]
 gi|294852965|ref|ZP_06793637.1| flagellar protein FlaF [Brucella sp. NVSL 07-0026]
 gi|297250154|ref|ZP_06933855.1| flaF, flagellar biosynthesis regulatory protein FlaF [Brucella
           abortus bv. 5 str. B3196]
 gi|306840133|ref|ZP_07472918.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. NF
           2653]
 gi|306841279|ref|ZP_07473990.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. BO2]
 gi|23464515|gb|AAN34296.1| flagellar protein FlaF, putative [Brucella suis 1330]
 gi|62198147|gb|AAX76446.1| hypothetical FlaF [Brucella abortus bv. 1 str. 9-941]
 gi|82940205|emb|CAJ13261.1| flagellar protein FlaF, putative [Brucella melitensis biovar
           Abortus 2308]
 gi|148369964|gb|ABQ62836.1| putative flagellar protein FlaF [Brucella ovis ATCC 25840]
 gi|161337990|gb|ABX64294.1| flagellar FlaF family protein [Brucella canis ATCC 23365]
 gi|163676177|gb|ABY40287.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
 gi|189021779|gb|ACD74500.1| flagellar protein FlaF, putative [Brucella abortus S19]
 gi|225642987|gb|ACO02900.1| Protein flaF [Brucella melitensis ATCC 23457]
 gi|237787334|gb|EEP61551.1| Protein flaF [Brucella abortus str. 2308 A]
 gi|255998555|gb|ACU50242.1| flagellar biosynthesis regulatory protein FlaF [Brucella microti
           CCM 4915]
 gi|260097410|gb|EEW81284.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
           NCTC 8038]
 gi|260155382|gb|EEW90463.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis bv. 4
           str. 40]
 gi|260669708|gb|EEX56648.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
           bv. 4 str. 292]
 gi|260673054|gb|EEX59875.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260677353|gb|EEX64174.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
           bv. 6 str. 870]
 gi|260872577|gb|EEX79646.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
           bv. 9 str. C68]
 gi|260917048|gb|EEX83909.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
           bv. 3 str. Tulya]
 gi|261299767|gb|EEY03264.1| flagellar biosynthesis regulatory protein FlaF [Brucella neotomae
           5K33]
 gi|261739452|gb|EEY27378.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis bv. 5
           str. 513]
 gi|261742696|gb|EEY30622.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis bv. 3
           str. 686]
 gi|262764476|gb|EEZ10508.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis
           bv. 3 str. Ether]
 gi|263091465|gb|EEZ16001.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis
           bv. 2 str. 63/9]
 gi|264664426|gb|EEZ34687.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. 83/13]
 gi|294818620|gb|EFG35620.1| flagellar protein FlaF [Brucella sp. NVSL 07-0026]
 gi|297174023|gb|EFH33387.1| flaF, flagellar biosynthesis regulatory protein FlaF [Brucella
           abortus bv. 5 str. B3196]
 gi|306288681|gb|EFM60012.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. BO2]
 gi|306404778|gb|EFM61072.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. NF
           2653]
 gi|326411300|gb|ADZ68364.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis
           M28]
 gi|326554589|gb|ADZ89228.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis
           M5-90]
          Length = 114

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 45/114 (39%), Positives = 75/114 (65%), Gaps = 1/114 (0%)

Query: 1   MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M Q  Y + + +     ++RE  + DRSI++L  A  +   S++ ++A ++TS++W   I
Sbjct: 1   MYQLRYEDVMNDDMASAKERERMLFDRSIAMLEAARANGAESREGIDAAYFTSKLWTTII 60

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
            DL SE+N LP+E++  +ISIG++VLKE ERIR+ +SN Y  +I++   +RDGL
Sbjct: 61  DDLGSEENALPKELRAAIISIGIFVLKEIERIRQGESNDYATLIEITQSIRDGL 114


>gi|17988506|ref|NP_541139.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis
           bv. 1 str. 16M]
 gi|256042863|ref|ZP_05445809.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|260564100|ref|ZP_05834585.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis
           bv. 1 str. 16M]
 gi|265989298|ref|ZP_06101855.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|17984298|gb|AAL53403.1| flaf protein [Brucella melitensis bv. 1 str. 16M]
 gi|260151743|gb|EEW86836.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis
           bv. 1 str. 16M]
 gi|262999967|gb|EEZ12657.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis
           bv. 1 str. Rev.1]
          Length = 114

 Score =  144 bits (364), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 44/114 (38%), Positives = 75/114 (65%), Gaps = 1/114 (0%)

Query: 1   MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M Q  Y + + +     ++RE  + DR+I++L  A  +   S++ ++A ++TS++W   I
Sbjct: 1   MYQLRYEDVMNDDMASAKERERMLFDRTIAMLEAARANGAESREGIDAAYFTSKLWTTII 60

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
            DL SE+N LP+E++  +ISIG++VLKE ERIR+ +SN Y  +I++   +RDGL
Sbjct: 61  DDLGSEENALPKELRAAIISIGIFVLKEIERIRQGESNDYATLIEITQSIRDGL 114


>gi|319409166|emb|CBI82810.1| Flaf protein [Bartonella schoenbuchensis R1]
          Length = 122

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 37/114 (32%), Positives = 67/114 (58%), Gaps = 1/114 (0%)

Query: 1   MRQ-YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M Q  Y + +++ ++  R+RE  + DR I L   A    P S +  EA+ +  ++W++ I
Sbjct: 1   MYQMRYEDVMEDDAMSARERERSLFDRCIKLFLDAKAKGPGSHEVNEAVQFARKLWIILI 60

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
           +DL   +N LP E+K +LISIG ++LKE +++   K   +  ++++   +RDGL
Sbjct: 61  EDLGQAENALPPELKASLISIGFFILKEIQKLDEGKVADFDVLVEISESIRDGL 114


>gi|217976243|ref|YP_002360390.1| flagellar biosynthesis regulatory protein FlaF [Methylocella
           silvestris BL2]
 gi|217501619|gb|ACK49028.1| flagellar FlaF family protein [Methylocella silvestris BL2]
          Length = 115

 Score =  144 bits (363), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 45/115 (39%), Positives = 74/115 (64%), Gaps = 1/115 (0%)

Query: 1   MRQ-YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M Q  Y E+++ S  ECR+RE   LD ++ LL  A      S  A EAL +  R+W   I
Sbjct: 1   MYQRSYAESLESSPGECRERERRALDHALQLLEKARHDGVGSAAAAEALHFLCRLWKALI 60

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +DL+S +N LP  ++ +L+S+G+WVL+E + IR  KS++++ +I++ S +R+GL+
Sbjct: 61  EDLISPENDLPDVLRGDLVSVGIWVLREADSIREEKSSNFRGLIEICSAIRNGLR 115


>gi|306845416|ref|ZP_07477990.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. BO1]
 gi|306274159|gb|EFM55975.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. BO1]
          Length = 114

 Score =  143 bits (362), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 44/114 (38%), Positives = 75/114 (65%), Gaps = 1/114 (0%)

Query: 1   MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M Q  Y + + +     ++RE  + DRSI++L  A  +   S++ ++A ++TS++W   I
Sbjct: 1   MYQLRYEDVMNDDMASAKERERMLFDRSIAMLEAARANGAESREGIDAAYFTSKLWTTII 60

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
            DL SE+N LP+E++  +ISIG++VLKE ERIR+ +SN Y  +I++   ++DGL
Sbjct: 61  DDLGSEENALPKELRAAIISIGIFVLKEIERIRQGESNDYATLIEITQSIQDGL 114


>gi|296445193|ref|ZP_06887153.1| flagellar FlaF family protein [Methylosinus trichosporium OB3b]
 gi|296257367|gb|EFH04434.1| flagellar FlaF family protein [Methylosinus trichosporium OB3b]
          Length = 115

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 43/112 (38%), Positives = 73/112 (65%)

Query: 2   RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQD 61
           R  Y +T Q+SS   R RE  +L+R+I LL++A    P S+++ EA     R+W++F+ D
Sbjct: 3   RHLYAQTAQDSSAVARGRERDVLERAIRLLAVAKVKGPRSRESFEATDNLRRLWLLFVDD 62

Query: 62  LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
           L S+ N LP+ ++ +LISIGLWV++E + I   K +++  +I++  ++ DGL
Sbjct: 63  LSSDGNALPEALRASLISIGLWVMREVDAIDSGKCDNFDGLIEINQMIADGL 114


>gi|254473396|ref|ZP_05086793.1| flagellar FlaF [Pseudovibrio sp. JE062]
 gi|211957512|gb|EEA92715.1| flagellar FlaF [Pseudovibrio sp. JE062]
          Length = 115

 Score =  141 bits (357), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 42/114 (36%), Positives = 70/114 (61%), Gaps = 1/114 (0%)

Query: 1   MRQ-YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M Q  Y ET+++SS + R +E  +    ++ L  A +    S +A +AL    R+W + I
Sbjct: 1   MYQMSYAETLEDSSEDRRGQERELFSLVVAQLQAADEHGSASSEAAQALTSVHRLWSILI 60

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
            DL S +N LP E++ +LISIG+W +K+ + IR  KS+ ++ +I++  +VRDGL
Sbjct: 61  SDLGSPENGLPAELRADLISIGIWCVKQADLIREGKSDDFKSLIEINELVRDGL 114


>gi|319403981|emb|CBI77569.1| Flaf protein [Bartonella rochalimae ATCC BAA-1498]
          Length = 122

 Score =  140 bits (352), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 38/114 (33%), Positives = 69/114 (60%), Gaps = 1/114 (0%)

Query: 1   MRQ-YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M Q  Y + +++ ++  R+RE ++ DR I LL  A    P S +A +A+ +  ++WV+ I
Sbjct: 1   MYQMRYEDVMEDDAMSARERERFLFDRCIKLLLAAKAKGPGSCEAKDAVQFARKLWVILI 60

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
           +DL    N LPQ +K +LISIG ++LKE +++   +   +  ++++   +RDGL
Sbjct: 61  EDLGQAANALPQALKASLISIGFFILKEIQKLDEGEITDFDVLVEISESIRDGL 114


>gi|328545488|ref|YP_004305597.1| flagellar protein flaF [polymorphum gilvum SL003B-26A1]
 gi|326415229|gb|ADZ72292.1| Flagellar protein flaF [Polymorphum gilvum SL003B-26A1]
          Length = 116

 Score =  140 bits (352), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 46/115 (40%), Positives = 73/115 (63%), Gaps = 1/115 (0%)

Query: 1   MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M  + Y +TI +  ++ R  E   +D  I+ L  A +    S++AVEA+F T R+W  FI
Sbjct: 1   MYSFSYAQTIDDLCVDQRSDERQAMDIVIAQLERAREKGLKSREAVEAIFNTRRLWSFFI 60

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           + L  + N LP  ++ +LISIG+WV+KE ER+R+ ++ +   +IDV ++VRDGLK
Sbjct: 61  ESLADDANELPPSLRADLISIGIWVIKEVERVRQRETETLDALIDVNAMVRDGLK 115


>gi|319406997|emb|CBI80634.1| Flaf protein [Bartonella sp. 1-1C]
          Length = 122

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 37/114 (32%), Positives = 69/114 (60%), Gaps = 1/114 (0%)

Query: 1   MRQ-YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M Q  Y + +++ ++  R+RE ++ DR I LL  A    P + +A +A+ +  ++WV+ I
Sbjct: 1   MYQMRYEDVMEDDAMSARERERFLFDRCIKLLLAAKAKGPGTCEAKDAVQFARKLWVILI 60

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
           +DL    N LPQ +K +LISIG ++LKE +++   +   +  ++++   +RDGL
Sbjct: 61  EDLGQAANALPQALKASLISIGFFILKEIQKLDEGEITDFDVLVEISESIRDGL 114


>gi|254505115|ref|ZP_05117266.1| Flagellar protein FlaF [Labrenzia alexandrii DFL-11]
 gi|222441186|gb|EEE47865.1| Flagellar protein FlaF [Labrenzia alexandrii DFL-11]
          Length = 116

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 48/114 (42%), Positives = 70/114 (61%), Gaps = 1/114 (0%)

Query: 1   MR-QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M    Y E +    I+ R  EH  +   I+ L+ AH+    S +AV+ALFYT RVW  F+
Sbjct: 1   MYNLSYAEVMDNLCIDDRLNEHKAMCIIIAKLTAAHEKGVRSPEAVDALFYTRRVWGFFM 60

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
           ++L  + N LP E + NLIS+G+WVLKE E +R+ +   + DII++ SI+RD L
Sbjct: 61  ENLADDANQLPDETRANLISVGIWVLKEAEALRQWEREDFSDIIEINSIIRDSL 114


>gi|121602017|ref|YP_989380.1| flagellar biosynthesis regulatory protein FlaF [Bartonella
           bacilliformis KC583]
 gi|120614194|gb|ABM44795.1| Flaf protein [Bartonella bacilliformis KC583]
          Length = 122

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 39/114 (34%), Positives = 70/114 (61%), Gaps = 1/114 (0%)

Query: 1   MRQ-YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M Q  Y + +++ ++  R+RE  + DR I LL  A +  P + +A EA+ +  ++WV+ I
Sbjct: 1   MYQMRYEDVMEDDAMSARERERSLFDRCIKLLQDAKEKGPGTYEANEAVQFARKLWVILI 60

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
           +DL   +N LPQ +K +LISIG ++LKE +R+   +   +  ++++   +RDGL
Sbjct: 61  EDLGQAENALPQTLKASLISIGFFILKEIQRLDEGEIADFDVLVEISESIRDGL 114


>gi|319898659|ref|YP_004158752.1| Flaf protein [Bartonella clarridgeiae 73]
 gi|319402623|emb|CBI76168.1| Flaf protein [Bartonella clarridgeiae 73]
          Length = 122

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 38/114 (33%), Positives = 69/114 (60%), Gaps = 1/114 (0%)

Query: 1   MRQ-YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M Q  Y + +++ ++  R+RE ++ DR I LL  A    P + +A EA+ +  ++WV+ I
Sbjct: 1   MYQMRYEDVMEDDAMSARERERFLFDRCIKLLLDAKMKGPGTCEAKEAVQFARKLWVILI 60

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
           +DL    N LPQ +K +LISIG ++LKE +++   +   +  ++++   +RDGL
Sbjct: 61  EDLGQAANALPQALKASLISIGFFILKEIQKLDEGEITDFDVLVEISESIRDGL 114


>gi|115523196|ref|YP_780107.1| flagellar biosynthesis regulatory protein FlaF [Rhodopseudomonas
           palustris BisA53]
 gi|115517143|gb|ABJ05127.1| flagellar FlaF family protein [Rhodopseudomonas palustris BisA53]
          Length = 115

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 44/110 (40%), Positives = 64/110 (58%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
            Y   I++S+ E R RE+  LD  I LL           +  EAL +  ++W  F+QDL 
Sbjct: 5   SYDNMIEDSAHEARAREYQALDHGIDLLKRLQNGDLQPFEQTEALLFMRKLWTFFVQDLS 64

Query: 64  SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
           S  N LP+ ++  LISIGLWV+KE +RIR+ K+    D+I + +I+RD L
Sbjct: 65  SPKNGLPESLRAELISIGLWVIKEADRIRQEKATDIDDLIAINTIIRDSL 114


>gi|319405424|emb|CBI79043.1| Flaf protein [Bartonella sp. AR 15-3]
          Length = 122

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 37/114 (32%), Positives = 69/114 (60%), Gaps = 1/114 (0%)

Query: 1   MRQ-YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M Q  Y + +++ ++  R+RE ++ DR I LL  A    P + +A +A+ +  ++WV+ I
Sbjct: 1   MYQMRYEDIMEDDAMSARERERFLFDRCIKLLLAAKAKGPGTCEAKDAVQFARKLWVILI 60

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
           +DL    N LPQ +K +LISIG ++LKE +++   +   +  ++++   +RDGL
Sbjct: 61  EDLGQAANALPQALKASLISIGFFILKEIQKLDEGEITDFDVLVEISESIRDGL 114


>gi|300024585|ref|YP_003757196.1| flagellar FlaF family protein [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299526406|gb|ADJ24875.1| flagellar FlaF family protein [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 114

 Score =  138 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 44/114 (38%), Positives = 78/114 (68%), Gaps = 1/114 (0%)

Query: 1   MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M ++ Y ET+ +S+   R+ E   +++S+S+L  A K+  NS++AV+A+ + +R+W   +
Sbjct: 1   MYKFSYEETLSDSAGRKRENERLAIEQSVSMLRSAEKAGANSREAVDAICFLNRLWSFLL 60

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
           +DLV  +N LP +++ NLISIG+W+LKE + I   KS ++  +IDV S++ +GL
Sbjct: 61  EDLVKPENALPDDIRANLISIGIWMLKEADAISSGKSKNFAGLIDVSSVIAEGL 114


>gi|323136998|ref|ZP_08072078.1| flagellar FlaF family protein [Methylocystis sp. ATCC 49242]
 gi|322397759|gb|EFY00281.1| flagellar FlaF family protein [Methylocystis sp. ATCC 49242]
          Length = 115

 Score =  137 bits (345), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 40/114 (35%), Positives = 67/114 (58%), Gaps = 1/114 (0%)

Query: 1   MRQ-YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M Q  Y E   ES    R +E   L+ +I  L++A    P + +A EA  Y  R+W +F+
Sbjct: 1   MYQQRYAEIASESGKNARAKEREALEIAIKKLAVAKTRGPLTPEAFEATNYLRRLWAIFM 60

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
           +DL +++N LP+ ++ +LISIGLW+ +E + I    S ++  +I+V  ++ DGL
Sbjct: 61  EDLSNDENGLPESLRASLISIGLWIRREADLIDTGGSVNFDGLIEVNQLIADGL 114


>gi|118589963|ref|ZP_01547367.1| flagellar protein flaF [Stappia aggregata IAM 12614]
 gi|118437460|gb|EAV44097.1| flagellar protein flaF [Stappia aggregata IAM 12614]
          Length = 116

 Score =  136 bits (344), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 46/114 (40%), Positives = 67/114 (58%), Gaps = 1/114 (0%)

Query: 1   MR-QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M    Y E + +   + R  EH  +   I  L++A +    S +AV+ALFYT R+W  F+
Sbjct: 1   MYNLSYAEVMDDLCSDQRLNEHEAMTIVIGKLNVAKERGVKSPEAVDALFYTRRLWSYFL 60

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
           + L  E N LP E + NLIS+G+WVLKE E +R+ +   + DII + SI+RD L
Sbjct: 61  EHLADEANELPIETRANLISVGIWVLKEVEALRQWEQEDFSDIIQINSIIRDSL 114


>gi|15964435|ref|NP_384788.1| flagellar biosynthesis regulatory protein FlaF [Sinorhizobium
           meliloti 1021]
 gi|307318932|ref|ZP_07598363.1| flagellar FlaF family protein [Sinorhizobium meliloti AK83]
 gi|10998531|gb|AAG25961.1|AF300968_3 FlaF [Sinorhizobium meliloti]
 gi|15073612|emb|CAC45254.1| Putative flagellin synthesis regulator [Sinorhizobium meliloti
           1021]
 gi|306895346|gb|EFN26101.1| flagellar FlaF family protein [Sinorhizobium meliloti AK83]
          Length = 115

 Score =  135 bits (341), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 52/115 (45%), Positives = 84/115 (73%), Gaps = 1/115 (0%)

Query: 1   MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M Q+ Y E ++E     + RE  +LDRSI+LL  A +    +++A+EA+++T R+W+ FI
Sbjct: 1   MYQFAYAEIMEEGVAVSKDREKQVLDRSIALLQAAKEKDGYTREAIEAVYFTRRLWIRFI 60

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +DL + DN L +E++ NLISIG+W+L E E+IR+ +S+++Q IID+ +I+RDGLK
Sbjct: 61  EDLRAPDNQLNEELRANLISIGIWILNETEKIRKRESSNFQGIIDITTIIRDGLK 115


>gi|150395506|ref|YP_001325973.1| flagellar biosynthesis regulatory protein FlaF [Sinorhizobium
           medicae WSM419]
 gi|150027021|gb|ABR59138.1| flagellar FlaF family protein [Sinorhizobium medicae WSM419]
          Length = 115

 Score =  135 bits (341), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 52/115 (45%), Positives = 84/115 (73%), Gaps = 1/115 (0%)

Query: 1   MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M Q+ Y E ++E     + RE  +LDRSI+LL  A +    +++A+EA+++T R+W+ FI
Sbjct: 1   MYQFAYAEIMEEGVAVSKDREKQVLDRSIALLQAAKEKNGYTREAIEAVYFTRRLWIRFI 60

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +DL + DN L +E++ NLISIG+W+L E E+IR+ +S+++Q IID+ +I+RDGLK
Sbjct: 61  EDLRAPDNQLNEELRANLISIGIWILNETEKIRKRESSNFQGIIDITTIIRDGLK 115


>gi|227820878|ref|YP_002824848.1| flagellar biosynthesis regulatory protein FlaF [Sinorhizobium
           fredii NGR234]
 gi|227339877|gb|ACP24095.1| predicted flagellar protein FlaF [Sinorhizobium fredii NGR234]
          Length = 115

 Score =  135 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 54/115 (46%), Positives = 82/115 (71%), Gaps = 1/115 (0%)

Query: 1   MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M Q+ Y E ++E     + RE  +L+RSI+LL  A +    S++A+EA++YT RVW+ FI
Sbjct: 1   MYQFAYAEIMEEGVAVSKDREWQVLNRSIALLEAAKQQKGYSREAIEAIYYTRRVWIRFI 60

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +DL + DN L  E++ NLISIG+W+L E E+IR+  S+++Q IID+ +I+RDGLK
Sbjct: 61  EDLRAPDNQLNDELRANLISIGIWILNETEKIRKRDSSNFQGIIDITTIIRDGLK 115


>gi|307311577|ref|ZP_07591218.1| flagellar FlaF family protein [Sinorhizobium meliloti BL225C]
 gi|306899594|gb|EFN30223.1| flagellar FlaF family protein [Sinorhizobium meliloti BL225C]
          Length = 115

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 51/115 (44%), Positives = 83/115 (72%), Gaps = 1/115 (0%)

Query: 1   MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M Q+ Y E ++E     + RE  +LDRSI+LL  A +    +++A+ A+++T R+W+ FI
Sbjct: 1   MYQFAYAEIMEEGVAVSKDREKQVLDRSIALLQAAKEKDGYTREAIAAVYFTRRLWIRFI 60

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +DL + DN L +E++ NLISIG+W+L E E+IR+ +S+++Q IID+ +I+RDGLK
Sbjct: 61  EDLRAPDNQLNEELRANLISIGIWILNETEKIRKRESSNFQGIIDITTIIRDGLK 115


>gi|90422627|ref|YP_530997.1| flagellar biosynthesis regulatory protein FlaF [Rhodopseudomonas
           palustris BisB18]
 gi|90104641|gb|ABD86678.1| flagellar FlaF [Rhodopseudomonas palustris BisB18]
          Length = 115

 Score =  133 bits (334), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 44/110 (40%), Positives = 62/110 (56%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
            Y   I++S  E R RE   L   I LL+        S   VEAL Y  R+W  F+ DL 
Sbjct: 5   SYDTVIEDSGQEARARERLALSHGIDLLTRLQSGDLRSPDDVEALLYIRRLWTFFVLDLS 64

Query: 64  SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
           S  N LP++++ +LISIG WV+KE +RIR+ K+    ++I V  ++RD L
Sbjct: 65  SPRNGLPEKLRADLISIGFWVIKEADRIRQEKATDIAELIAVNVVIRDSL 114


>gi|170748122|ref|YP_001754382.1| flagellar biosynthesis regulatory protein FlaF [Methylobacterium
           radiotolerans JCM 2831]
 gi|170654644|gb|ACB23699.1| flagellar FlaF family protein [Methylobacterium radiotolerans JCM
           2831]
          Length = 119

 Score =  133 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 67/112 (59%)

Query: 3   QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDL 62
           + Y ET+ +S    R+RE    DR+I L+  A  +  +++   EA  +  R+W + I DL
Sbjct: 8   EAYRETMGDSPAIGREREREAFDRAIELMKRADAAEASAELRWEATSFLQRLWSMLIDDL 67

Query: 63  VSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
            +  N LP +++ +LISIGLW +   ++I R  ++ ++ +I V +++RDGL+
Sbjct: 68  ANPANSLPPQLRADLISIGLWNMSRSDQILRGDASGFEPLIYVNTLIRDGLR 119


>gi|27381966|ref|NP_773495.1| flagellar biosynthesis regulatory protein FlaF [Bradyrhizobium
           japonicum USDA 110]
 gi|27355136|dbj|BAC52120.1| fliC [Bradyrhizobium japonicum USDA 110]
          Length = 117

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 39/112 (34%), Positives = 64/112 (57%)

Query: 2   RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQD 61
            + Y   ++ES  + R RE   L   I  L    K   + +  V++L Y  R+W +FI+D
Sbjct: 6   FEAYEAVVEESGYQERGRERQALSLGIDRLERIEKGPFSFEDLVQSLLYVRRLWTIFIED 65

Query: 62  LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
           L   +N LP +++ ++ISIGLWV+KE +R+R  KS     +I++  ++RD L
Sbjct: 66  LSHPENGLPDKLRADIISIGLWVIKEADRLREEKSGDVMQLIEINRLIRDAL 117


>gi|158422274|ref|YP_001523566.1| flagellar biosynthesis regulatory protein FlaF [Azorhizobium
           caulinodans ORS 571]
 gi|158329163|dbj|BAF86648.1| flagellar FlaF protein [Azorhizobium caulinodans ORS 571]
          Length = 115

 Score =  131 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 37/115 (32%), Positives = 70/115 (60%), Gaps = 1/115 (0%)

Query: 1   MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M ++ Y E +++SS E R RE    DR++ LL  A  +  ++ +   A+ +  R+W + I
Sbjct: 1   MYKFSYAEILEDSSTESRARERDAFDRALELLVSAESAGLDTPECRAAMLFLQRLWGLLI 60

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +DL   +N L  E++ +L+SIGLW ++E +R+    S+++  +I++   +RDGL+
Sbjct: 61  RDLTDANNELAPELRADLVSIGLWNIREADRVLEQSSSNFSGLININRTIRDGLQ 115


>gi|12330683|gb|AAG52880.1| FlaF [Brucella abortus]
          Length = 104

 Score =  130 bits (328), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 41/104 (39%), Positives = 68/104 (65%), Gaps = 1/104 (0%)

Query: 1   MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M Q  Y + + +     ++RE  + DRSI++L  A  +   S++ ++A ++TS++W   I
Sbjct: 1   MYQLRYEDVMNDDMASAKERERMLFDRSIAMLEAARANGAESREGIDAAYFTSKLWTTII 60

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDII 103
            DL SE+N LP+E++  +ISIG++VLKE ERIR+ +SN Y  +I
Sbjct: 61  DDLGSEENALPKELRAAIISIGIFVLKEIERIRQGESNDYATLI 104


>gi|170744546|ref|YP_001773201.1| flagellar biosynthesis regulatory protein FlaF [Methylobacterium
           sp. 4-46]
 gi|168198820|gb|ACA20767.1| flagellar FlaF family protein [Methylobacterium sp. 4-46]
          Length = 115

 Score =  130 bits (327), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 39/115 (33%), Positives = 70/115 (60%), Gaps = 1/115 (0%)

Query: 1   MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M ++ Y+E ++++   CR+RE    DR+++LL  A  +    +   EA+ +  R+W V I
Sbjct: 1   MYRFSYNEILEDAPDLCRERERAAFDRALALLRKADAADAKFEDRGEAVSFLQRLWDVLI 60

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +DL++ +N LP+ ++ +L+SIGLW ++E     R    S   +IDV + +RDGL+
Sbjct: 61  EDLLNPENGLPEPLRTDLVSIGLWSMREASEALRLPERSLAPLIDVNTAIRDGLR 115


>gi|163758035|ref|ZP_02165123.1| putative flagellin synthesis regulator protein [Hoeflea
           phototrophica DFL-43]
 gi|162284324|gb|EDQ34607.1| putative flagellin synthesis regulator protein [Hoeflea
           phototrophica DFL-43]
          Length = 115

 Score =  128 bits (322), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 53/115 (46%), Positives = 83/115 (72%), Gaps = 1/115 (0%)

Query: 1   MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M Q+ Y +  ++   E R+RE   ++ SISLL+ A      S++A+EA+++ SR+WV F+
Sbjct: 1   MYQFSYADVQEDGVAEAREREREAINHSISLLTAAKAKGVESREAIEAVYFVSRLWVRFV 60

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +DL S +N L +E++ NLISIG+W++KE ERIR+ +SN++Q IID+  I+RDGLK
Sbjct: 61  EDLASPENQLEEELRANLISIGIWIIKESERIRKRESNNFQGIIDISIIIRDGLK 115


>gi|304392490|ref|ZP_07374430.1| flagellar biosynthesis regulatory protein FlaF [Ahrensia sp.
           R2A130]
 gi|303295120|gb|EFL89480.1| flagellar biosynthesis regulatory protein FlaF [Ahrensia sp.
           R2A130]
          Length = 117

 Score =  126 bits (317), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 46/115 (40%), Positives = 69/115 (60%), Gaps = 1/115 (0%)

Query: 1   MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M Q+ Y ET   S    R  E  +L +SI LL +A +    SK AVEA+++T+R+W  FI
Sbjct: 3   MGQFGYAETNANSGKAARAGERALLRQSIDLLKLAKEQGTQSKAAVEAVYFTNRLWTAFI 62

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +DL  E+N L   ++ NLISIG+ +L+   RIR     +  +I++V  I+ DGL+
Sbjct: 63  EDLGGEENRLEPTLRANLISIGISILRSTGRIREGDETAIDEIVEVSGIILDGLR 117


>gi|182680454|ref|YP_001834600.1| flagellar biosynthesis regulatory protein FlaF [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|182636337|gb|ACB97111.1| flagellar FlaF family protein [Beijerinckia indica subsp. indica
           ATCC 9039]
          Length = 91

 Score =  125 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 61/91 (67%)

Query: 24  LDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLW 83
           +D ++ LL  A     +S   +EAL Y  R+W + ++DL + DN LP+ ++ +L+S+G+W
Sbjct: 1   MDHALDLLENARNKGASSIACIEALSYLCRLWTLLMEDLANPDNDLPEVLRADLLSVGIW 60

Query: 84  VLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +LKE + I++  S++   +I++ +++RDGLK
Sbjct: 61  ILKETDAIQKGTSDNLVGLIEICTLIRDGLK 91


>gi|312115277|ref|YP_004012873.1| flagellar FlaF family protein [Rhodomicrobium vannielii ATCC 17100]
 gi|311220406|gb|ADP71774.1| flagellar FlaF family protein [Rhodomicrobium vannielii ATCC 17100]
          Length = 115

 Score =  122 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 47/115 (40%), Positives = 65/115 (56%), Gaps = 1/115 (0%)

Query: 1   MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M    Y E +       R  E   + RSI+LL    ++   S +A+EAL YT R+WV FI
Sbjct: 1   MYHSPYQEALATDVRMARSTERASILRSINLLQRGAEAGSRSAEAIEALLYTKRLWVFFI 60

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           + L   DN LP +++ +LISIG+ VL+  E IRR +S  +  IIDV   V +GLK
Sbjct: 61  EQLGLPDNRLPHKLRADLISIGIAVLRRIEAIRRGESKDFGFIIDVSRSVAEGLK 115


>gi|254559271|ref|YP_003066366.1| flagellar protein FlaF [Methylobacterium extorquens DM4]
 gi|254266549|emb|CAX22313.1| Flagellar protein FlaF [Methylobacterium extorquens DM4]
          Length = 116

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 34/114 (29%), Positives = 60/114 (52%), Gaps = 1/114 (0%)

Query: 2   RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEA-LFYTSRVWVVFIQ 60
           R  Y E ++++    R+RE    DR++S L  A      +  A  A +     +W V I 
Sbjct: 3   RLSYAEIMEDAPDLGRERERDAFDRALSQLRTAEAQGAAAGPARSAAVGSIQDLWNVLIA 62

Query: 61  DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           DL+  +N LP+ ++ +L++IGLW ++E   +      S   +I+V + +RDGL+
Sbjct: 63  DLLDPENALPESLRADLVAIGLWNMREAGEVLSTPDRSLAALIEVNTSIRDGLQ 116


>gi|188579928|ref|YP_001923373.1| flagellar biosynthesis regulatory protein FlaF [Methylobacterium
           populi BJ001]
 gi|179343426|gb|ACB78838.1| flagellar FlaF family protein [Methylobacterium populi BJ001]
          Length = 116

 Score =  118 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 59/114 (51%), Gaps = 1/114 (0%)

Query: 2   RQYYHETIQESSIECRKREHWILDRSISLLS-IAHKSLPNSKQAVEALFYTSRVWVVFIQ 60
           R  Y E ++++    R+RE    DR++ LL     +      +   A+     +W V I 
Sbjct: 3   RLSYSEIMEDAPDLGREREREAFDRALGLLRTAEAQGAGAGAERNSAVGSIQELWNVLIS 62

Query: 61  DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           DL+  +N LP+ ++ +L++IGLW ++E   +      S   +I+V + +RDGL+
Sbjct: 63  DLLDPENGLPEGLRADLVAIGLWNMREAGEVLSTPERSLSALIEVNTSIRDGLR 116


>gi|163850126|ref|YP_001638169.1| flagellar biosynthesis regulatory protein FlaF [Methylobacterium
           extorquens PA1]
 gi|218528730|ref|YP_002419546.1| flagellar biosynthesis regulatory protein FlaF [Methylobacterium
           chloromethanicum CM4]
 gi|240137260|ref|YP_002961729.1| Flagellar protein FlaF [Methylobacterium extorquens AM1]
 gi|163661731|gb|ABY29098.1| flagellar FlaF family protein [Methylobacterium extorquens PA1]
 gi|218521033|gb|ACK81618.1| flagellar FlaF family protein [Methylobacterium chloromethanicum
           CM4]
 gi|240007226|gb|ACS38452.1| Flagellar protein FlaF [Methylobacterium extorquens AM1]
          Length = 116

 Score =  117 bits (293), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 34/114 (29%), Positives = 60/114 (52%), Gaps = 1/114 (0%)

Query: 2   RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEA-LFYTSRVWVVFIQ 60
           R  Y E ++++    R+RE    DR++S L  A      +  A  A +     +W V I 
Sbjct: 3   RLSYAEIMEDAPDLGRERERDAFDRALSQLRTAEAQGAAAGPARSAAVGSIQDLWNVLIA 62

Query: 61  DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           DL+  +N LP+ ++ +L++IGLW ++E   +      S   +I+V + +RDGL+
Sbjct: 63  DLLDPENALPESLRADLVAIGLWNMREAGEVLSAPDRSLAALIEVNTSIRDGLQ 116


>gi|163794166|ref|ZP_02188139.1| flagellar FlaF family protein [alpha proteobacterium BAL199]
 gi|159180780|gb|EDP65299.1| flagellar FlaF family protein [alpha proteobacterium BAL199]
          Length = 124

 Score =  101 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 52/103 (50%), Gaps = 1/103 (0%)

Query: 12  SSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQ 71
           ++   R  E+ +L +    L  A   +   ++ + A+    +VW VF+ DL   DN LPQ
Sbjct: 15  ATQNGRDLEYRLLAQVTGALIKARDGMATLQERLNAILRNEKVWGVFLADLNHPDNGLPQ 74

Query: 72  EVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           ++K  + S+ L+V+KE + +    +    D+I +   +  GLK
Sbjct: 75  QLKGGIASLALFVMKETQLVIDTNAP-LDDLILINRQIMAGLK 116


>gi|209963551|ref|YP_002296466.1| flagellar protein FlaF, putative [Rhodospirillum centenum SW]
 gi|209957017|gb|ACI97653.1| flagellar protein FlaF, putative [Rhodospirillum centenum SW]
          Length = 124

 Score =  100 bits (249), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 54/110 (49%), Gaps = 3/110 (2%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
            Y ++++++ +  R+ EH +  +  + L +  +  P++   + A+    R+W   + DL 
Sbjct: 10  AYRQSMRDT-VSPRQLEHRVFSQVTAELEVCTRQ-PDAFATIRAVDRNRRLWGALVTDLA 67

Query: 64  SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
             DN LP  +K  LIS+GLWV +    +   +      +I+V   V  GL
Sbjct: 68  QPDNLLPDALKAGLISLGLWVNRYSSEVL-TEGRPLNPLIEVNRTVMQGL 116


>gi|92116893|ref|YP_576622.1| flagellar biosynthesis regulatory protein FlaF [Nitrobacter
           hamburgensis X14]
 gi|91799787|gb|ABE62162.1| flagellar FlaF [Nitrobacter hamburgensis X14]
          Length = 121

 Score = 98.8 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 1/112 (0%)

Query: 3   QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDL 62
           Q Y  T Q SS         +L  +  L  I +      K    AL +  R+W +F+   
Sbjct: 6   QAYARTAQTSSSPREIEAQALLKAARQLQEIQNNWTGPDKNMHNALLFNRRLWSIFMSAA 65

Query: 63  VSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNS-YQDIIDVISIVRDGL 113
            S+DN  P EV+ N+ +IG++V+K+   ++ N   +  + +ID+   +  GL
Sbjct: 66  DSDDNQQPLEVRQNIANIGVFVMKQTIDMQMNPDPAKLKSLIDINCNLAAGL 117


>gi|296531759|ref|ZP_06894581.1| possible flaF protein [Roseomonas cervicalis ATCC 49957]
 gi|296267898|gb|EFH13703.1| possible flaF protein [Roseomonas cervicalis ATCC 49957]
          Length = 141

 Score = 97.3 bits (241), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 35/111 (31%), Positives = 49/111 (44%), Gaps = 2/111 (1%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
            Y   I+  + + R  E+ +L R+ SLL  A +         EA+     VW  F  DL 
Sbjct: 23  AYGSVIR-GTEDPRDIEYRVLARATSLLEAAQRPNAGPSALPEAIHENRMVWTAFAADLA 81

Query: 64  SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +E+N      K  L+S+  WV  E ER+ R    S   + DV   V  GLK
Sbjct: 82  AEENGWDMVTKGRLLSLARWVFAESERVLRG-GRSPHALCDVNRAVMAGLK 131


>gi|86139474|ref|ZP_01058043.1| flagellar protein FlaF, putative [Roseobacter sp. MED193]
 gi|85823977|gb|EAQ44183.1| flagellar protein FlaF, putative [Roseobacter sp. MED193]
          Length = 128

 Score = 94.2 bits (233), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 7/103 (6%)

Query: 18  KREHWILDRSISLLSIAHKSLPNSKQA------VEALFYTSRVWVVFIQDLVSEDNHLPQ 71
            +E+ I+ RS   L  AHK    +K         EAL    ++W +F  DL S DN LPQ
Sbjct: 23  DKEYDIVARSTQNLLAAHKVASANKGTEGFKVLTEALHKNRKMWNIFTADLASSDNQLPQ 82

Query: 72  EVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +VK NL  +  +  +   ++   K+ + + +I++   V  GL+
Sbjct: 83  DVKDNLFYLAEFTRQHTSKVLSRKA-NVRALIEINMAVLRGLR 124


>gi|75675299|ref|YP_317720.1| flagellar biosynthesis regulatory protein FlaF [Nitrobacter
           winogradskyi Nb-255]
 gi|74420169|gb|ABA04368.1| putative flagellar protein FlaF [Nitrobacter winogradskyi Nb-255]
          Length = 121

 Score = 92.3 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 1/112 (0%)

Query: 3   QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDL 62
           Q Y  T Q SS         +L  +  L  +  K         +AL +  R+W +F+   
Sbjct: 6   QAYARTAQTSSSPREIEAQALLKAARQLREVQDKWEGPDNDMHKALLFNRRLWSIFMSAA 65

Query: 63  VSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNS-YQDIIDVISIVRDGL 113
            S+ N  P EV+ N+ +IG++V+K+   ++ N   +    +ID+   +  GL
Sbjct: 66  DSDSNPQPLEVRQNIANIGVFVMKQTVDMQLNPDPAKLTALIDINCNLAAGL 117


>gi|85715037|ref|ZP_01046022.1| putative flagellar protein FlaF [Nitrobacter sp. Nb-311A]
 gi|85698234|gb|EAQ36106.1| putative flagellar protein FlaF [Nitrobacter sp. Nb-311A]
          Length = 121

 Score = 91.5 bits (226), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 1/112 (0%)

Query: 3   QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDL 62
           Q Y  T Q SS         +L  +  L  I            +AL +  R+W +F+   
Sbjct: 6   QAYARTAQTSSSPREIEAQALLKAARQLREIQEHWKGPDNDMHKALLFNRRLWSIFMSAA 65

Query: 63  VSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNS-YQDIIDVISIVRDGL 113
            SE N  P EV+ N+ +IG++V+K+   ++ N   +    +ID+   +  GL
Sbjct: 66  DSESNPQPLEVRQNIANIGVFVMKQTVDMQLNPDPAKLTALIDINCNLAAGL 117


>gi|302383513|ref|YP_003819336.1| flagellar FlaF family protein [Brevundimonas subvibrioides ATCC
           15264]
 gi|302194141|gb|ADL01713.1| flagellar FlaF family protein [Brevundimonas subvibrioides ATCC
           15264]
          Length = 120

 Score = 90.8 bits (224), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 3/114 (2%)

Query: 1   MRQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNS-KQAVEALFYTSRVWVVFI 59
           M + Y +     +   R+ E+ +  +    L  A    P+  K  ++AL +  R+W V  
Sbjct: 1   MLKAYAQ-ASTRTETPREMEYRLFGQVTRALMHAATVDPSDVKTRIDALDWNRRLWSVLA 59

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
            D     N L   ++  +ISI L+V +    I R +   ++ +ID+   +  GL
Sbjct: 60  TDCSDPSNQLNTPLRAQIISISLFVGRHSSAIMRGE-EDFEALIDINRSIMQGL 112


>gi|315500093|ref|YP_004088896.1| flagellar flaf family protein [Asticcacaulis excentricus CB 48]
 gi|315418105|gb|ADU14745.1| flagellar FlaF family protein [Asticcacaulis excentricus CB 48]
          Length = 136

 Score = 89.2 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 53/112 (47%), Gaps = 3/112 (2%)

Query: 3   QYYHETIQESSIECRKREHWILDRSI-SLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQD 61
           Q Y +T Q S  + R+ E+ +  +   +L+  A        + ++AL +  R+W V   D
Sbjct: 4   QAYQKTAQRS-EDPRQTEYRLFGQVTRALMEAAELDRSEVSRRMDALDWNRRLWSVLGTD 62

Query: 62  LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
                N LP+ ++  ++S+ +WV +    + R +      +I+V  ++  GL
Sbjct: 63  CALPGNGLPETLRAQIVSLSIWVNRHTSAVMRGQEE-IAPLIEVNRLIMQGL 113


>gi|163794169|ref|ZP_02188142.1| flagellar FlaF family protein [alpha proteobacterium BAL199]
 gi|159180783|gb|EDP65302.1| flagellar FlaF family protein [alpha proteobacterium BAL199]
          Length = 143

 Score = 88.8 bits (219), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 60/119 (50%), Gaps = 9/119 (7%)

Query: 2   RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNS-------KQAVEALFYTSRV 54
              Y  TI++++   R  E+ +L +  S L  + +    S        Q ++AL + ++V
Sbjct: 4   YDAYKRTIKQTAAP-RDVEYRLLAQVTSGLMKSKELREGSNRDPRRMAQIMDALNWNNQV 62

Query: 55  WVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
           W  F++D+ +E N LP+E++  ++S+G+WV +E   +   +      +I V   +  GL
Sbjct: 63  WDAFVEDVGTEGNMLPRELRAAIVSLGIWVTRETALVTSGEG-DIDALIAVNRAIMRGL 120


>gi|260429492|ref|ZP_05783469.1| flagellar biosynthesis regulatory protein FlaF [Citreicella sp.
           SE45]
 gi|260420115|gb|EEX13368.1| flagellar biosynthesis regulatory protein FlaF [Citreicella sp.
           SE45]
          Length = 125

 Score = 87.3 bits (215), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 50/114 (43%), Gaps = 2/114 (1%)

Query: 1   MRQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNS-KQAVEALFYTSRVWVVFI 59
           M Q  +     S+   R  E+ +  R    +  A ++ P +  Q VEAL+   R+W    
Sbjct: 6   MAQRAYAENATSTRTDRATEYDLFARVTHRIKAAAEAGPKAYPQLVEALYDNRRLWTTLA 65

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
            D+    N LPQE++  +  +  +V     ++   K+     +++V + +  GL
Sbjct: 66  VDVADPSNKLPQELRAQIFYLSEFVQLHTGKVLARKAR-LAPLLEVNAAIMRGL 118


>gi|295689336|ref|YP_003593029.1| flagellar FlaF family protein [Caulobacter segnis ATCC 21756]
 gi|295431239|gb|ADG10411.1| flagellar FlaF family protein [Caulobacter segnis ATCC 21756]
          Length = 120

 Score = 87.3 bits (215), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 52/114 (45%), Gaps = 2/114 (1%)

Query: 1   MRQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQ-AVEALFYTSRVWVVFI 59
           M    ++     +   R+ E+ +  +    L  A ++  +     ++AL +  +VW    
Sbjct: 1   MSLRAYQQAATRAENPREMEYRLFGQVTRALMEASQAPADDFAKRIDALDWNRKVWSALA 60

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
            D    DN LP E++ ++IS+ LWV +    +   K   ++ +I++  I+  GL
Sbjct: 61  TDCSLPDNQLPMELRASIISLSLWVSRHSSAV-MRKEEEFEPLIEINRIIMQGL 113


>gi|161485648|ref|NP_420272.2| flagellar biosynthesis regulatory protein FlaF [Caulobacter
           crescentus CB15]
 gi|221234463|ref|YP_002516899.1| flagellar biosynthesis regulatory protein FlaF [Caulobacter
           crescentus NA1000]
 gi|220963635|gb|ACL94991.1| flagellar biosynthesis regulatory protein flaF [Caulobacter
           crescentus NA1000]
          Length = 120

 Score = 87.3 bits (215), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 52/114 (45%), Gaps = 2/114 (1%)

Query: 1   MRQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQ-AVEALFYTSRVWVVFI 59
           M    ++     +   R+ E+ +  +    L  A ++  +     ++AL +  +VW    
Sbjct: 1   MSLRAYQQAATRAENPREMEYRLFGQVTRALMDASQAPADDIATRIDALDWNRKVWSALA 60

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
            D    +N LP E++ ++IS+ LWV +    +   K   ++ +I++  ++  GL
Sbjct: 61  TDCALPENQLPMELRASIISLSLWVGRHSSAV-MRKEEDFEPLIEINRMIMQGL 113


>gi|126738587|ref|ZP_01754292.1| flagellar protein FlaF, putative [Roseobacter sp. SK209-2-6]
 gi|126720386|gb|EBA17092.1| flagellar protein FlaF, putative [Roseobacter sp. SK209-2-6]
          Length = 128

 Score = 86.5 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 54/104 (51%), Gaps = 7/104 (6%)

Query: 17  RKREHWILDRSISLLSIAHK--SLPNSKQAV----EALFYTSRVWVVFIQDLVSEDNHLP 70
           +  E+ ++ R+   L  AHK  +  +  +       AL    ++W +F  DL++++N LP
Sbjct: 22  KDNEYEVVARATHKLLAAHKVANAKSGPEGFKVLASALHTNRKMWNIFEVDLLAKENQLP 81

Query: 71  QEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           QEVK NL+ +  +  +   ++   K+   + ++++ + +  GL+
Sbjct: 82  QEVKTNLLYLAEFTRQHTSKVLSRKA-GIKPLVEINTAIMRGLR 124


>gi|83858827|ref|ZP_00952349.1| flaF protein [Oceanicaulis alexandrii HTCC2633]
 gi|83853650|gb|EAP91502.1| flaF protein [Oceanicaulis alexandrii HTCC2633]
          Length = 118

 Score = 86.1 bits (212), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 3/113 (2%)

Query: 2   RQYYHETIQESSIECRKREHWILDRSI-SLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQ 60
            Q Y +T    + + R+ E+ +L      L+ +        +Q V AL    RVW  F  
Sbjct: 3   YQAY-KTASSRTEDPRQTEYRLLGEVTRGLMEVRDAPKSEIRQRVAALDRNRRVWSAFAA 61

Query: 61  DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
           D  S  N+LP  ++  +IS+ ++V KE     R ++   + +ID+   +  GL
Sbjct: 62  DCASSHNNLPDSLRAGIISLSIFVSKETSAAMRGET-DVETLIDINRTIMQGL 113


>gi|167646850|ref|YP_001684513.1| flagellar biosynthesis regulatory protein FlaF [Caulobacter sp.
           K31]
 gi|167349280|gb|ABZ72015.1| flagellar FlaF family protein [Caulobacter sp. K31]
          Length = 120

 Score = 85.0 bits (209), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 52/114 (45%), Gaps = 2/114 (1%)

Query: 1   MRQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQ-AVEALFYTSRVWVVFI 59
           M    ++     +   R+ E+ +  +    L  A ++  +     ++AL +  RVW    
Sbjct: 1   MSLRAYQQTATRTENPREMEYRLFGQVTRALMAASEAPADDIATRIDALDWNRRVWSALA 60

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
            D    +N LP +++ ++IS+ LWV +    +   K   ++ +I++  ++  GL
Sbjct: 61  TDCSLPENTLPVQLRASIISLSLWVGRHSSAV-MRKEEDFEPLIEINRMIMQGL 113


>gi|163738068|ref|ZP_02145484.1| flagellar protein FlaF, putative [Phaeobacter gallaeciensis BS107]
 gi|161388684|gb|EDQ13037.1| flagellar protein FlaF, putative [Phaeobacter gallaeciensis BS107]
          Length = 123

 Score = 85.0 bits (209), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 48/100 (48%), Gaps = 2/100 (2%)

Query: 16  CRKREHWILDRSISLLSIAHKSL-PNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVK 74
            +  E+ ++ R    +  A +   P   +   AL    ++W +F  ++ S  N LP E+K
Sbjct: 21  AKNLEYEVIARVTRRMVAAAQKGKPGFTELAAALTDNRKLWSIFSVEVASPGNPLPDELK 80

Query: 75  LNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
             L+S+G +  +   ++   K+   + ++++ + +  GL+
Sbjct: 81  AQLLSLGEFTHQHTSKVLARKA-DVRLLVEINTAIMRGLR 119


>gi|114798597|ref|YP_758996.1| putative flagellar biosynthesis regulatory protein [Hyphomonas
           neptunium ATCC 15444]
 gi|114738771|gb|ABI76896.1| putative flagellar biosynthesis regulatory protein [Hyphomonas
           neptunium ATCC 15444]
          Length = 128

 Score = 84.6 bits (208), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 52/113 (46%), Gaps = 3/113 (2%)

Query: 2   RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAV-EALFYTSRVWVVFIQ 60
            + Y +  Q +    R  E+ + ++    L   H     +  A  +A++   ++W +   
Sbjct: 6   YKAYGQVTQRT-ATGRALEYAVFEQITRDLQSVHDDGGANTGAWGDAIYRNLQLWTIIAT 64

Query: 61  DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
           DL+S +N LP E K  LIS+  +V +   +I    +   +DII+V   +  GL
Sbjct: 65  DLLSAENALPDETKAGLISLSEFVRRTSMKILSG-TEGLEDIIEVNRTIMAGL 116


>gi|254465480|ref|ZP_05078891.1| flagellar protein FlaF, putative [Rhodobacterales bacterium Y4I]
 gi|206686388|gb|EDZ46870.1| flagellar protein FlaF, putative [Rhodobacterales bacterium Y4I]
          Length = 123

 Score = 84.2 bits (207), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 48/100 (48%), Gaps = 2/100 (2%)

Query: 16  CRKREHWILDRSISLLSIAHKSLPNSK-QAVEALFYTSRVWVVFIQDLVSEDNHLPQEVK 74
            +  E+ ++ R    L  A +   +   +  +AL    ++W +F  DL  + N LP  +K
Sbjct: 21  AKNFEYEVVTRVTRRLITAAQKGSDGFNELAQALNDNRKLWSIFTADLAMKSNPLPDNLK 80

Query: 75  LNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
            NL  +  +  +   ++ + K+ + + ++++ + +  GL+
Sbjct: 81  QNLFELAEFTRQHTSKVLQRKA-NVRPLVEINTAILRGLR 119


>gi|120266|sp|P21295|FLAF_CAUCR RecName: Full=Protein flaF
 gi|40421|emb|CAA33231.1| unnamed protein product [Caulobacter crescentus CB15]
 gi|13422828|gb|AAK23440.1| flaF protein [Caulobacter crescentus CB15]
          Length = 102

 Score = 83.4 bits (205), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 46/95 (48%), Gaps = 2/95 (2%)

Query: 20  EHWILDRSISLLSIAHKSLPNSKQ-AVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLI 78
           E+ +  +    L  A ++  +     ++AL +  +VW     D    +N LP E++ ++I
Sbjct: 2   EYRLFGQVTRALMDASQAPADDIATRIDALDWNRKVWSALATDCALPENQLPMELRASII 61

Query: 79  SIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
           S+ LWV +    +   K   ++ +I++  ++  GL
Sbjct: 62  SLSLWVGRHSSAV-MRKEEDFEPLIEINRMIMQGL 95


>gi|99082813|ref|YP_614967.1| flagellar biosynthesis regulatory protein FlaF [Ruegeria sp.
           TM1040]
 gi|99039093|gb|ABF65705.1| FlaF protein [Ruegeria sp. TM1040]
          Length = 123

 Score = 82.7 bits (203), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 2/100 (2%)

Query: 16  CRKREHWILDRSISLLSIAHKSLPNS-KQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVK 74
            R  E+ IL R    + +A     +  K  V A+    ++W +F  DL  E N LP E+K
Sbjct: 21  ARNTEYEILARITHRMIVADSKGSDGFKDLVAAVSDNRKLWTLFTSDLAKEGNKLPTELK 80

Query: 75  LNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
             L  +  +  +   ++   K+ S Q ++++ + +  GL+
Sbjct: 81  QRLFHLARFTREHTSKVLARKA-SVQPLVEINTAIMRGLR 119


>gi|254500444|ref|ZP_05112595.1| Flagellar protein FlaF [Labrenzia alexandrii DFL-11]
 gi|222436515|gb|EEE43194.1| Flagellar protein FlaF [Labrenzia alexandrii DFL-11]
          Length = 125

 Score = 82.7 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 56/115 (48%), Gaps = 3/115 (2%)

Query: 3   QYYHETIQESSIECRKREHWILDRSISLLSIAHK--SLPNSKQAVEALFYTSRVWVVFIQ 60
           Q Y +T Q + +  R+ E  +L ++ + L +        +  +  +AL Y  ++W V + 
Sbjct: 7   QAYQKTSQAAPVSPRELEATLLMKAAARLQLIKDEWDDLSLAEVDDALIYNRKLWTVLVT 66

Query: 61  DLVSEDNHLPQEVKLNLISIGLWVLKEC-ERIRRNKSNSYQDIIDVISIVRDGLK 114
              SE++ LP E+K N+ S+G++V K+    I          +I +   + +GL+
Sbjct: 67  SATSEESSLPLEIKNNIGSLGVFVFKQTMTVITTQDPEKLGALISINRTIAEGLR 121


>gi|294679040|ref|YP_003579655.1| flagellar FlaF family protein [Rhodobacter capsulatus SB 1003]
 gi|294477860|gb|ADE87248.1| flagellar FlaF family protein [Rhodobacter capsulatus SB 1003]
          Length = 125

 Score = 82.3 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 2/99 (2%)

Query: 17  RKREHWILDRSISLLSIAHK-SLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKL 75
           R  E+ I  R    L  A      N    V AL+   R+W     D+   DN LP  ++ 
Sbjct: 22  RGTEYEIFARVTHRLKQAAGLDKSNFPAVVRALYDNRRLWTTLAVDVALPDNELPDTLRA 81

Query: 76  NLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
            +  +  +      ++ + ++ S   +ID+ + +  GL+
Sbjct: 82  RIFYLNQFTQAHSAKVLKGEA-SIDVLIDINTAIMRGLR 119


>gi|259418039|ref|ZP_05741958.1| flagellar biosynthesis regulatory protein FlaF [Silicibacter sp.
           TrichCH4B]
 gi|259346945|gb|EEW58759.1| flagellar biosynthesis regulatory protein FlaF [Silicibacter sp.
           TrichCH4B]
          Length = 123

 Score = 81.9 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 48/100 (48%), Gaps = 2/100 (2%)

Query: 16  CRKREHWILDRSISLLSIAHKSLPNS-KQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVK 74
            R  E+ IL R    + +A+    +  K  V A+    ++W +F  DL  + N LP E+K
Sbjct: 21  ARNTEYEILARITHRMIVANGKGSDGFKDLVAAVSDNRKLWTLFTSDLAKDGNKLPDELK 80

Query: 75  LNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
             L  +  +  +   ++   K+ S Q ++++ + +  GL+
Sbjct: 81  QRLFHLARFTREHSSKVLARKA-SVQPLVEINTAIMRGLR 119


>gi|218507949|ref|ZP_03505827.1| flagellar biosynthesis regulatory protein FlaF [Rhizobium etli
          Brasil 5]
          Length = 98

 Score = 81.5 bits (200), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 41/61 (67%), Gaps = 1/61 (1%)

Query: 1  MRQY-YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
          M Q+ Y E +Q+S  + ++RE  +LDRSI LL++A       ++A+E LFYT RVW+ FI
Sbjct: 1  MYQFSYAEVMQDSVADAKEREWQVLDRSIELLALARDKDTYGREAIEVLFYTRRVWISFI 60

Query: 60 Q 60
          +
Sbjct: 61 R 61


>gi|254418530|ref|ZP_05032254.1| Flagellar protein FlaF [Brevundimonas sp. BAL3]
 gi|196184707|gb|EDX79683.1| Flagellar protein FlaF [Brevundimonas sp. BAL3]
          Length = 121

 Score = 80.7 bits (198), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 46/112 (41%), Gaps = 3/112 (2%)

Query: 3   QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQ-AVEALFYTSRVWVVFIQD 61
           Q Y       +   R  E+ +  +    L  A           ++AL +  R+W     D
Sbjct: 4   QAYKA-ATSRAETPRDLEYRLFGQVTRALVHASTVDERDLATRIDALDWNRRLWSTLASD 62

Query: 62  LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
                N LP  ++  +IS+ L++ +    + R +   +QD+I++  ++  GL
Sbjct: 63  CGDPANVLPASLRAQIISLSLFINRHSSAVMRGEET-FQDLIEINRMMMQGL 113


>gi|146341919|ref|YP_001206967.1| flagellar biosynthesis regulatory protein FlaF [Bradyrhizobium sp.
           ORS278]
 gi|146194725|emb|CAL78750.1| conserved hypothetical protein; putative FlaF protein
           [Bradyrhizobium sp. ORS278]
          Length = 96

 Score = 80.7 bits (198), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 24  LDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLW 83
           L  +  L  +        +   +AL +  R+W +F+  + +EDN  P +++ N+ +IG++
Sbjct: 2   LKAARQLQEVQANWNGPDRNMYKALLFNRRLWTIFMSAMEAEDNPNPLDIRQNIANIGVF 61

Query: 84  VLKECERIRRNKSNS-YQDIIDVISIVRDGL 113
           V+K+   ++ +   +  + +ID+   +  GL
Sbjct: 62  VMKQTIEMQMDPDPAKLKSLIDINCHIAAGL 92


>gi|149912825|ref|ZP_01901359.1| flagellar protein FlaF, putative [Roseobacter sp. AzwK-3b]
 gi|149813231|gb|EDM73057.1| flagellar protein FlaF, putative [Roseobacter sp. AzwK-3b]
          Length = 124

 Score = 80.3 bits (197), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 48/103 (46%), Gaps = 1/103 (0%)

Query: 12  SSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQ 71
           ++   R  E+    R    L+ A K+  +  +   AL+   R+W++   D+  + N LP 
Sbjct: 17  ATNTPRDTEYDAFARVTRRLTAAAKTPGDVPELAAALYDNRRLWMILASDVALKSNPLPG 76

Query: 72  EVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           ++K  LI +  +      ++   K+ + + +I+V   V  GL+
Sbjct: 77  DLKARLIYLAEFAEVHGRKVLAGKATA-EPLIEVNRAVMQGLQ 118


>gi|114762155|ref|ZP_01441623.1| flagellar protein FlaF, putative [Pelagibaca bermudensis HTCC2601]
 gi|114545179|gb|EAU48182.1| flagellar protein FlaF, putative [Roseovarius sp. HTCC2601]
          Length = 125

 Score = 80.3 bits (197), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 51/114 (44%), Gaps = 2/114 (1%)

Query: 1   MRQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQA-VEALFYTSRVWVVFI 59
           M Q  +     S+   R  E+ +L R    +  A ++ P +    V AL+   R+W    
Sbjct: 6   MAQRAYTQPTTSTRTDRAIEYDLLARVTHRIKSAAEAGPKAYPRLVRALYDNRRLWTALA 65

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
            D+ S +N LPQE++  +  +  +V     ++   K+     +++V + +  GL
Sbjct: 66  VDVASTENALPQELRAQIFYLAEFVQLHTGKVLARKAR-LAPLLEVNAAILRGL 118


>gi|119384358|ref|YP_915414.1| flagellar FlaF family protein [Paracoccus denitrificans PD1222]
 gi|119374125|gb|ABL69718.1| flagellar FlaF family protein [Paracoccus denitrificans PD1222]
          Length = 121

 Score = 80.0 bits (196), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 47/98 (47%), Gaps = 2/98 (2%)

Query: 17  RKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLN 76
           R  E++   +    L  A +S       +EA   ++++W +   +L+  +N LP ++K  
Sbjct: 21  RDNEYFAFSQVTQTLKRACQSGDR-YLMIEAAHSSNQLWTIVATNLMHPENTLPSDIKAG 79

Query: 77  LISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           L+S+  + LK+   +  +   +   +I+V   +  GL+
Sbjct: 80  LLSLAFFSLKQGHHVISSGVPA-DPLIEVNMRIMRGLR 116


>gi|163742536|ref|ZP_02149922.1| flagellar protein FlaF, putative [Phaeobacter gallaeciensis 2.10]
 gi|161384121|gb|EDQ08504.1| flagellar protein FlaF, putative [Phaeobacter gallaeciensis 2.10]
          Length = 88

 Score = 80.0 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 44/85 (51%), Gaps = 1/85 (1%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECE 89
           +++ A K  P   +   AL    ++W +F  ++ S  N LP E+K  L+S+G +  +   
Sbjct: 1   MVAAAQKGKPGFTELAAALTDNRKLWSIFSVEVASPGNPLPDELKAQLLSLGEFTHQHTS 60

Query: 90  RIRRNKSNSYQDIIDVISIVRDGLK 114
           ++   K+   + ++++ + +  GL+
Sbjct: 61  KVLARKA-DVRLLVEINTAIMRGLR 84


>gi|27380953|ref|NP_772482.1| flagellar biosynthesis regulatory protein FlaF [Bradyrhizobium
           japonicum USDA 110]
 gi|27354119|dbj|BAC51107.1| bll5842 [Bradyrhizobium japonicum USDA 110]
          Length = 122

 Score = 79.6 bits (195), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 54/111 (48%), Gaps = 1/111 (0%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
            Y      ++         +L  +  L    + + P S+Q ++AL +  ++W +F+ + +
Sbjct: 8   AYARVATTTASPRDIEAQTLLKAANKLQDAVNNADPLSEQTMQALMFNRKLWTIFLSEAM 67

Query: 64  SEDNHLPQEVKLNLISIGLWVLKECERIRRNKS-NSYQDIIDVISIVRDGL 113
            ++N  P +V+  + +I ++VL +   ++ +   + ++ +I++   +  GL
Sbjct: 68  RDNNPQPIDVRQKIANISVFVLSQTAALQMSPQFDHFRPLIEINRNIAAGL 118


>gi|149203154|ref|ZP_01880125.1| flagellar protein FlaF, putative [Roseovarius sp. TM1035]
 gi|149143700|gb|EDM31736.1| flagellar protein FlaF, putative [Roseovarius sp. TM1035]
          Length = 125

 Score = 79.2 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 2/112 (1%)

Query: 3   QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVE-ALFYTSRVWVVFIQD 61
           Q  +     S    R  E+    R    L  A    P    ++  AL    R+W +   D
Sbjct: 8   QSAYRDQSRSVRTDRGLEYDAFARITQRLVHAAGQDPRDIASLAVALHDNRRLWTILATD 67

Query: 62  LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
           +    N LPQ ++  ++ +  +       +  N + S Q +ID+ + +  GL
Sbjct: 68  VADPQNPLPQSLRAQVVYLAQFCHHHSSAVL-NTNASLQPLIDINTAIMRGL 118


>gi|254475812|ref|ZP_05089198.1| flagellar protein FlaF, putative [Ruegeria sp. R11]
 gi|214030055|gb|EEB70890.1| flagellar protein FlaF, putative [Ruegeria sp. R11]
          Length = 123

 Score = 78.8 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 51/100 (51%), Gaps = 2/100 (2%)

Query: 16  CRKREHWILDRSISLLSIAHKSL-PNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVK 74
            +  E+ ++ R    +  A +   P  K+ VEAL    ++W +F  ++ + +N LP+++K
Sbjct: 21  AKNLEYEVIARITRRMVAAAQKGRPGFKELVEALKDNRKLWSIFADEVANPENPLPEDLK 80

Query: 75  LNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
             L+ +  +  +   ++   K+   + ++++ + +  GL+
Sbjct: 81  SQLLYLREFTNQHTSKVMARKA-DVRMLVEINTAIMRGLR 119


>gi|197104849|ref|YP_002130226.1| Flagellar biosynthesis regulator FlaF [Phenylobacterium zucineum
           HLK1]
 gi|196478269|gb|ACG77797.1| Flagellar biosynthesis regulator FlaF [Phenylobacterium zucineum
           HLK1]
          Length = 104

 Score = 78.8 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 48/95 (50%), Gaps = 2/95 (2%)

Query: 20  EHWILDRSI-SLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLI 78
           E+ +  +   +L+  A     + K  ++AL +  RVW V   D     N LP+E++ ++I
Sbjct: 2   EYRLFAQVTRALMEAAKLPADDLKGRMDALDWNRRVWSVLGADCQQTGNGLPRELRASII 61

Query: 79  SIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
           S+ +WV K    + R +    + +I++  ++  GL
Sbjct: 62  SLSIWVGKHTSLVIRQQEE-IEPLIEINRMIMQGL 95


>gi|209967004|ref|YP_002299919.1| flagellar protein FlaF, putative [Rhodospirillum centenum SW]
 gi|209960470|gb|ACJ01107.1| flagellar protein FlaF, putative [Rhodospirillum centenum SW]
          Length = 138

 Score = 78.4 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 47/112 (41%), Gaps = 6/112 (5%)

Query: 2   RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQD 61
            Q    T +      +  E          L  A  S P+    + AL    ++W+  + D
Sbjct: 6   YQQRAATQET----AQSLELRAFGFVTQGLRQASTS-PDPTARIRALHRNHQLWLTLVSD 60

Query: 62  LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
           L + +N LP+E+K  LIS+G+W ++   R           +IDV + +  G+
Sbjct: 61  LATPENPLPEELKGRLISLGMWSMRYSLRAMEEDIP-VDPLIDVNTEIAGGI 111


>gi|90423003|ref|YP_531373.1| flagellar biosynthesis regulatory protein FlaF [Rhodopseudomonas
           palustris BisB18]
 gi|90105017|gb|ABD87054.1| flagellar FlaF [Rhodopseudomonas palustris BisB18]
          Length = 121

 Score = 78.4 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 47/112 (41%), Gaps = 1/112 (0%)

Query: 3   QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDL 62
           Q Y  T Q+ +         +L  +  L         +      AL +  ++W +F+ D 
Sbjct: 6   QAYARTAQQIASPRDIEAQALLKAARQLQDAVTNWNESDSGLNAALIFNRKLWSIFVSDA 65

Query: 63  VSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNS-YQDIIDVISIVRDGL 113
           +S+ N     ++ N+ +IG++VL +C  ++          +I++   +  GL
Sbjct: 66  ISDANPEAIAIRQNIANIGIFVLTQCAALQVKPERDRLHALIEINRNIATGL 117


>gi|329889088|ref|ZP_08267431.1| protein flaF [Brevundimonas diminuta ATCC 11568]
 gi|328844389|gb|EGF93953.1| protein flaF [Brevundimonas diminuta ATCC 11568]
          Length = 120

 Score = 78.4 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 50/114 (43%), Gaps = 2/114 (1%)

Query: 1   MRQYYHETIQESSIECRKREHWILDRSI-SLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M    ++T    +   R+ E+ +  +   +L+  A     +    ++AL +  R+W    
Sbjct: 1   MSLQAYKTAATRAESPREMEYRLFGQVTRALMHAATLDKSDVAGRMDALDWNRRLWSTLA 60

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
                  N +PQ ++   IS+ L+V +    + R + + +  +ID+  ++  GL
Sbjct: 61  TACSDSANAMPQAMRAQFISLSLFVNRNTSEVMRGE-DDFSTLIDINRMIMQGL 113


>gi|110677571|ref|YP_680578.1| flagellar biosynthesis regulatory protein FlaF [Roseobacter
           denitrificans OCh 114]
 gi|109453687|gb|ABG29892.1| flagellar protein, putative [Roseobacter denitrificans OCh 114]
          Length = 123

 Score = 77.7 bits (190), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 49/112 (43%), Gaps = 2/112 (1%)

Query: 3   QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDL 62
           Q  +   Q      R  E+ ++ R    +  A +   +     EAL   +++W     D+
Sbjct: 8   QRAYAPTQAPIKTARSTEYEVIARISHRMKRAMQQD-DFPALAEALHENNKLWTTLAIDV 66

Query: 63  VSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
            + DN LP E++  ++ +  +  +   ++   K+ +   ++++ + +  GLK
Sbjct: 67  GNPDNLLPDELRARIVYLADFTRQHSHKV-MRKTETAVPLLEINAAILKGLK 117


>gi|85706200|ref|ZP_01037295.1| flagellar protein FlaF, putative [Roseovarius sp. 217]
 gi|85669364|gb|EAQ24230.1| flagellar protein FlaF, putative [Roseovarius sp. 217]
          Length = 124

 Score = 77.7 bits (190), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 2/99 (2%)

Query: 16  CRKREHWILDRSISLLSIAHKSLPNS-KQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVK 74
            R  E+    R    L +A             AL    R+W +   D+   DN LP+E++
Sbjct: 21  ERGLEYDAFARITHRLGLAAAKGREDIHNLAAALHDNRRLWTILATDVADPDNPLPKELR 80

Query: 75  LNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
             ++ +  +       +    + S Q +ID+ + +  GL
Sbjct: 81  ARIVYLAQFSHHHSTMVLNGDA-SIQPLIDINTAMMRGL 118


>gi|115523546|ref|YP_780457.1| flagellar biosynthesis regulatory protein FlaF [Rhodopseudomonas
           palustris BisA53]
 gi|115517493|gb|ABJ05477.1| flagellar FlaF family protein [Rhodopseudomonas palustris BisA53]
          Length = 121

 Score = 77.7 bits (190), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 50/112 (44%), Gaps = 1/112 (0%)

Query: 3   QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDL 62
           Q Y  T Q+ +         +L  +  L  +            EAL +  ++W +F+ D 
Sbjct: 6   QAYARTAQKVATPRDIEAQALLKAARKLQDVMATWPEGDVDFNEALMFNRKLWSLFVSDA 65

Query: 63  VSEDNHLPQEVKLNLISIGLWVLKECERI-RRNKSNSYQDIIDVISIVRDGL 113
           + ++N    E++ N+ +IG++VL +   +  + +    Q +ID+   +  GL
Sbjct: 66  LRDENPESIEIRQNIANIGIFVLTQSAALALKPEVERLQALIDINRNIAAGL 117


>gi|89056693|ref|YP_512144.1| flagellar biosynthesis regulatory protein FlaF [Jannaschia sp.
           CCS1]
 gi|88866242|gb|ABD57119.1| flagellar protein FlaF putative [Jannaschia sp. CCS1]
          Length = 124

 Score = 77.7 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 43/98 (43%), Gaps = 1/98 (1%)

Query: 16  CRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKL 75
            R  E+       + L+ + ++     +   AL    ++W +   DL   DN LPQ ++ 
Sbjct: 21  ERGTEYAAFQSVTARLNKSRRADAPMSERAAALHDNRKLWTILASDLADSDNGLPQSLRA 80

Query: 76  NLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
            L  +  + L +  +    ++++   +++V + V  GL
Sbjct: 81  QLFYLAEFSLLQSRKALS-EADALTALVEVNTAVMRGL 117


>gi|222053750|ref|YP_002536112.1| flagellar FlaF family protein [Geobacter sp. FRC-32]
 gi|221563039|gb|ACM19011.1| flagellar FlaF family protein [Geobacter sp. FRC-32]
          Length = 128

 Score = 77.3 bits (189), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 56/113 (49%), Gaps = 4/113 (3%)

Query: 6   HETIQESSIECRKREHWILDRSISLLSIAH-KSLPNSKQAV--EALFYTSRVWVVFIQDL 62
           +  IQ+ ++  R+ E  +L R+  +L           ++    EAL +  ++W  F  +L
Sbjct: 9   YANIQKEALTGRELEASVLTRAAQMLKHCQDNWNAPDREKKLQEALKFNQKIWSFFQAEL 68

Query: 63  VSEDNHLPQEVKLNLISIGLWVLKEC-ERIRRNKSNSYQDIIDVISIVRDGLK 114
              DN LP++++ +++S+ L+V K   E I   +S     +ID+   +  GL+
Sbjct: 69  SVPDNPLPKKLREDILSLSLFVDKRIFEIIAFPESEKLTIVIDINMNIAAGLR 121


>gi|56698281|ref|YP_168654.1| flagellar biosynthesis regulatory protein FlaF [Ruegeria pomeroyi
           DSS-3]
 gi|56680018|gb|AAV96684.1| flagellar protein FlaF, putative [Ruegeria pomeroyi DSS-3]
          Length = 125

 Score = 77.3 bits (189), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 52/114 (45%), Gaps = 3/114 (2%)

Query: 2   RQYYHETIQESSIECRKREHWILDRSISLL-SIAHKSLPNSKQAVEALFYTSRVWVVFIQ 60
           RQ Y       +   R  E+ +L R    + S A +      + VEAL   +R+W V   
Sbjct: 8   RQAYSA-ASAPTRTPRNMEYEVLSRITHRMHSAAKRGRAGFGELVEALHENNRLWGVLAA 66

Query: 61  DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           ++   +N LP +++  L  +  +      ++ R ++ S + ++++ + V  GL+
Sbjct: 67  NVAEGENALPPDLRARLFYLAEFTQVHTSKVLRREA-SPRPLLEINTAVLRGLR 119


>gi|310816822|ref|YP_003964786.1| flagellar biosynthesis regulatory protein FlaF [Ketogulonicigenium
           vulgare Y25]
 gi|308755557|gb|ADO43486.1| flagellar biosynthesis regulatory protein FlaF [Ketogulonicigenium
           vulgare Y25]
          Length = 123

 Score = 76.5 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 3/99 (3%)

Query: 15  ECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVK 74
           + R  E  I  R  + L  A     N    V+AL    R+W     D+ S  N LP +++
Sbjct: 20  DTRSTEQAIFSRITAALIAAE--GANFPTKVKALHDNRRLWTWLAADVASAQNQLPADLR 77

Query: 75  LNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
             L  +  + L    ++ R +      +ID+   +  GL
Sbjct: 78  ARLFYLAEFTLDHSSKVLR-EGADLAPLIDINRAMLLGL 115


>gi|307945681|ref|ZP_07661017.1| protein FlaF [Roseibium sp. TrichSKD4]
 gi|307771554|gb|EFO30779.1| protein FlaF [Roseibium sp. TrichSKD4]
          Length = 97

 Score = 76.5 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 1/86 (1%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKEC- 88
            L        +  Q  +AL Y  ++W + +    + +N LPQE+K N+ S+G++V K+  
Sbjct: 8   QLVKDEWQQTSLAQRDDALTYNRKLWTILVTSATNGENPLPQEIKNNIASLGVFVFKQTM 67

Query: 89  ERIRRNKSNSYQDIIDVISIVRDGLK 114
           E +   + N    +I +   + +GL+
Sbjct: 68  EAMTDEEGNKLNSLISINRAIAEGLR 93


>gi|86750907|ref|YP_487403.1| flagellar biosynthesis regulatory protein FlaF [Rhodopseudomonas
           palustris HaA2]
 gi|86573935|gb|ABD08492.1| Flagellar FlaF [Rhodopseudomonas palustris HaA2]
          Length = 122

 Score = 76.1 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 50/113 (44%), Gaps = 2/113 (1%)

Query: 3   QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEA-LFYTSRVWVVFIQD 61
           Q Y  T Q ++         +L  +  L  +           ++A L +  ++W +F+ D
Sbjct: 6   QAYARTAQRTASPREIEAQALLKAARQLQDVVTSWDERGAIGLDAALMFNRKLWSIFVSD 65

Query: 62  LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKS-NSYQDIIDVISIVRDGL 113
            + +DN    E++ N+ +IG++VL +   ++ +        +I++   +  GL
Sbjct: 66  AMRDDNPQTLEIRQNIANIGVFVLSQSTALQMSPQVEPLNALIEINRNIAAGL 118


>gi|254294686|ref|YP_003060709.1| flagellar FlaF family protein [Hirschia baltica ATCC 49814]
 gi|254043217|gb|ACT60012.1| flagellar FlaF family protein [Hirschia baltica ATCC 49814]
          Length = 134

 Score = 76.1 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 46/112 (41%), Gaps = 3/112 (2%)

Query: 3   QYYHETIQESSIECRKREHWILDRSI-SLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQD 61
           Q Y +T    + + R  E  +       L+           + V++L    +VW     D
Sbjct: 4   QAYQKTA-NRTADPRDVEFRLFAEVTRDLMEATKAEKHEISKVVKSLDKNRQVWNAMAMD 62

Query: 62  LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
                N LP +++  +IS+ L+V +      RN+S   + +ID+   +  GL
Sbjct: 63  CAQPGNALPDDLRAGIISLSLFVNRHTSEASRNRSE-IETLIDINRNIMQGL 113


>gi|299131798|ref|ZP_07024993.1| flagellar FlaF family protein [Afipia sp. 1NLS2]
 gi|298591935|gb|EFI52135.1| flagellar FlaF family protein [Afipia sp. 1NLS2]
          Length = 121

 Score = 76.1 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 44/111 (39%), Gaps = 1/111 (0%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
            Y    Q +S         +L  +  L  +             AL +  ++W + +  + 
Sbjct: 7   AYARVAQTTSSPREIEAQALLKAARQLQDVMSNWGKAGTDVSGALLFNRKLWSILLSAVT 66

Query: 64  SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNS-YQDIIDVISIVRDGL 113
           S+++    E++ N+ +IG +VL +   ++        + +I++   +  GL
Sbjct: 67  SDESPQSIEIRQNIANIGTFVLSQTAEMQIAPKPELLKPLIEINCNLAAGL 117


>gi|163733163|ref|ZP_02140607.1| flagellar protein, putative [Roseobacter litoralis Och 149]
 gi|161393698|gb|EDQ18023.1| flagellar protein, putative [Roseobacter litoralis Och 149]
          Length = 123

 Score = 75.7 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 48/112 (42%), Gaps = 2/112 (1%)

Query: 3   QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDL 62
           Q  +   Q      R  E+ ++ R    +  A +   +     EAL   +++W     D+
Sbjct: 8   QRAYAPTQAPIKTARSTEYEVIARISHRMKRAMQQD-DFPALAEALHENNKLWTTLAIDV 66

Query: 63  VSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
            + DN LP E++  ++ +  +      ++   K+ +   ++++ + +  GLK
Sbjct: 67  GNPDNLLPDELRARIVYLADFTRLHSHKV-MRKTETAVPLLEINAAILKGLK 117


>gi|114765256|ref|ZP_01444388.1| flaF protein [Pelagibaca bermudensis HTCC2601]
 gi|114542391|gb|EAU45419.1| flaF protein [Roseovarius sp. HTCC2601]
          Length = 145

 Score = 75.7 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 50/121 (41%), Gaps = 13/121 (10%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAV-----------EALFYTS 52
            Y +TI+ES    ++ E  +  R    +     +   ++              +A+    
Sbjct: 5   AYKQTIRES-ASPKQIEARVFARITGSMEQHRANWLAARDKFARTAVLAHGLRDAVAENR 63

Query: 53  RVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDG 112
            +W     DL  E+N LP E++ NL+SI +WV + C  +     +    +IDV   +  G
Sbjct: 64  VLWSRLRTDLTDENNQLPAELRANLLSIAMWVDRTCGVVI-GGGDGLPALIDVNQNILGG 122

Query: 113 L 113
           L
Sbjct: 123 L 123


>gi|209884515|ref|YP_002288372.1| flagellar FlaF [Oligotropha carboxidovorans OM5]
 gi|209872711|gb|ACI92507.1| flagellar FlaF [Oligotropha carboxidovorans OM5]
          Length = 121

 Score = 75.3 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 17/111 (15%), Positives = 44/111 (39%), Gaps = 1/111 (0%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
            Y    Q +S         +L  +  L  +             AL +  ++W + +  + 
Sbjct: 7   AYARVAQTTSSPREIEAQALLKAARQLQDVMSNWGKADVDVSGALLFNRKLWSILLSAVT 66

Query: 64  SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNS-YQDIIDVISIVRDGL 113
           S+++    E++ N+ +IG +V+ +   ++        + +I++   +  GL
Sbjct: 67  SDESPQSIEIRQNIANIGTFVMTQTAEMQIAPKPELLKPLIEINCNLAAGL 117


>gi|91976151|ref|YP_568810.1| flagellar biosynthesis regulatory protein FlaF [Rhodopseudomonas
           palustris BisB5]
 gi|91682607|gb|ABE38909.1| flagellar FlaF [Rhodopseudomonas palustris BisB5]
          Length = 122

 Score = 75.0 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 51/113 (45%), Gaps = 2/113 (1%)

Query: 3   QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSK-QAVEALFYTSRVWVVFIQD 61
           Q Y  T Q ++         +L  +  L  I             EAL +  ++W +F+ D
Sbjct: 6   QAYARTAQRTASPREIEAQALLKAARQLQDIVTNWSERGAIGLNEALMFNRKLWSIFVSD 65

Query: 62  LVSEDNHLPQEVKLNLISIGLWVLKECERIR-RNKSNSYQDIIDVISIVRDGL 113
            + +DN    E++ N+ +IG++VL +   ++ + +    + +I++   +  GL
Sbjct: 66  AMRDDNPQSIEIRQNIANIGVFVLSQSAALQMKAEVEPLKALIEINRNIAAGL 118


>gi|114570513|ref|YP_757193.1| flagellar biosynthesis regulatory protein FlaF [Maricaulis maris
           MCS10]
 gi|114340975|gb|ABI66255.1| flagellar FlaF family protein [Maricaulis maris MCS10]
          Length = 126

 Score = 75.0 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 6/113 (5%)

Query: 2   RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNS-KQAVEALFYTSRVWVVFIQ 60
            Q      ++     R  E+ +  +    L  A      S +   +A+ +  RVW     
Sbjct: 6   YQKSAARAED----PRATEYRLFAQVTRSLMNAKSLPIESLQDRAQAIDWNRRVWSNLAL 61

Query: 61  DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
           D  S+DN LP+ ++  +IS+ ++V K+     RN   +  D++D+   V  GL
Sbjct: 62  DCASQDNKLPEALRAAIISLSIFVSKQGSHAMRNP-EAIDDLVDINRTVMQGL 113


>gi|83944194|ref|ZP_00956650.1| flaF protein [Sulfitobacter sp. EE-36]
 gi|83845061|gb|EAP82942.1| flaF protein [Sulfitobacter sp. EE-36]
          Length = 133

 Score = 74.6 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 13/121 (10%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAV-----------EALFYTS 52
            Y  TI  +  + R+ E  IL    S L    ++   + +             + L+   
Sbjct: 5   AYKRTISHT-EDPRQIERRILASVTSKLENKFEAFDGAAEKSQKLQMLADGLRDTLWENQ 63

Query: 53  RVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDG 112
           RVW+ F  DL  +DN L  +++  LIS+ LWV    + +    S + + +ID+   + DG
Sbjct: 64  RVWLTFKADLAEKDNGLTADLRAALISLALWVENHTKAVLSG-SKNVKPLIDINRSIIDG 122

Query: 113 L 113
           L
Sbjct: 123 L 123


>gi|288962698|ref|YP_003452992.1| FliL protein [Azospirillum sp. B510]
 gi|288914964|dbj|BAI76448.1| FliL protein [Azospirillum sp. B510]
          Length = 132

 Score = 74.6 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 50/111 (45%), Gaps = 2/111 (1%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
            YH+TI E   + RK E+ +  R    L     +   S    +AL+    +W     DL+
Sbjct: 5   AYHQTIAE-CDDPRKIEYRVFLRITLALEQNRDADWRSAALKDALWRNLELWNALRADLL 63

Query: 64  SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
            + N LP+ ++  L+S+   V +  +R+ R +      ++ +   V  GL+
Sbjct: 64  EDGNALPEALRAGLVSLSFAVNRNTQRVLRGEG-GIDLLLHINRSVMQGLQ 113


>gi|148256807|ref|YP_001241392.1| flagellar biosynthesis regulatory protein FlaF [Bradyrhizobium sp.
           BTAi1]
 gi|146408980|gb|ABQ37486.1| hypothetical protein BBta_5526 [Bradyrhizobium sp. BTAi1]
          Length = 96

 Score = 74.2 bits (181), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 44/91 (48%), Gaps = 1/91 (1%)

Query: 24  LDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLW 83
           L  +  L  +        +   +AL +  R+W +F+  +   DN    E++ N+ +IG++
Sbjct: 2   LKAARQLQDVQANWNGPDRNMYKALLFNRRLWTIFMSAVEMNDNPNSIEIRQNIANIGVF 61

Query: 84  VLKECERIRRNKSNS-YQDIIDVISIVRDGL 113
           V+K+   ++ +   +  + +ID+   +  GL
Sbjct: 62  VMKQTIEMQMDPDPAKLKSLIDINCHIAAGL 92


>gi|328543142|ref|YP_004303251.1| flagellar protein FlaF [polymorphum gilvum SL003B-26A1]
 gi|326412888|gb|ADZ69951.1| Flagellar protein FlaF [Polymorphum gilvum SL003B-26A1]
          Length = 97

 Score = 74.2 bits (181), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 1/86 (1%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECE 89
            L        +  +  +AL Y  ++W V +      ++HLPQ++K NL S+G++V K   
Sbjct: 8   QLIKDEWDGSSFAEKDDALAYNRKLWTVLVTSATGAESHLPQDLKNNLASLGVFVFKHTI 67

Query: 90  RIRRNKS-NSYQDIIDVISIVRDGLK 114
            +  + +      +I +   + +GL+
Sbjct: 68  NVLIDPAPEKLDTLIFINRSIAEGLR 93


>gi|39936974|ref|NP_949250.1| flagellar biosynthesis regulatory protein FlaF [Rhodopseudomonas
           palustris CGA009]
 gi|192292802|ref|YP_001993407.1| flagellar biosynthesis regulatory protein FlaF [Rhodopseudomonas
           palustris TIE-1]
 gi|39650831|emb|CAE29354.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009]
 gi|192286551|gb|ACF02932.1| flagellar FlaF family protein [Rhodopseudomonas palustris TIE-1]
          Length = 122

 Score = 74.2 bits (181), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 52/113 (46%), Gaps = 2/113 (1%)

Query: 3   QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAV-EALFYTSRVWVVFIQD 61
           Q Y  T Q ++         +L  +  L  +           + EAL +  ++W +F+ +
Sbjct: 6   QAYARTAQRTASPREIEAQALLKAAKQLQDVVTNWEEKGAIGLQEALLFNRKLWSIFVTE 65

Query: 62  LVSEDNHLPQEVKLNLISIGLWVLKECERIR-RNKSNSYQDIIDVISIVRDGL 113
            + +DN    E++ N+ +IG++V+ +   ++ + +    Q +ID+   +  GL
Sbjct: 66  AMRDDNPQSIEIRQNIANIGVFVMSQSSALQIKPEVERLQALIDINRNIAAGL 118


>gi|83594188|ref|YP_427940.1| putative flagellar protein FlaF [Rhodospirillum rubrum ATCC 11170]
 gi|83577102|gb|ABC23653.1| putative flagellar protein FlaF [Rhodospirillum rubrum ATCC 11170]
          Length = 104

 Score = 73.8 bits (180), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 42/93 (45%), Gaps = 1/93 (1%)

Query: 23  ILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGL 82
              ++  +L  A     +     +AL +   +W +   D+    N LP E+K N++S+ L
Sbjct: 2   AFTKAAVMLEEARTKPNDKTAFSQALRFNHLLWTIIQADITEPANTLPPELKANIMSLSL 61

Query: 83  WVLKECER-IRRNKSNSYQDIIDVISIVRDGLK 114
           +V ++    +R  +    + +I +   +  GL+
Sbjct: 62  FVDRQTTASLRSGEVGELEILISINRNLAAGLR 94


>gi|163744337|ref|ZP_02151697.1| flaF protein [Oceanibulbus indolifex HEL-45]
 gi|161381155|gb|EDQ05564.1| flaF protein [Oceanibulbus indolifex HEL-45]
          Length = 134

 Score = 73.4 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 48/121 (39%), Gaps = 13/121 (10%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVE-----------ALFYTS 52
            Y  TI+ES    R+ E  IL R    L+   +    ++   E           AL+   
Sbjct: 5   AYKRTIRESETP-RQIERRILSRVTHDLAEKGQGFDATEDKSERLNILSTGLRDALYENQ 63

Query: 53  RVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDG 112
           R W     DL    N +P  +K +LISI LWV +    +   +      ++++   +  G
Sbjct: 64  RFWSALRYDLAEPGNTMPDALKASLISIALWVERHSTALMAGEGR-LAGLVEINGNIAAG 122

Query: 113 L 113
           L
Sbjct: 123 L 123


>gi|254509559|ref|ZP_05121626.1| flagellar FlaF family protein [Rhodobacteraceae bacterium KLH11]
 gi|221533270|gb|EEE36258.1| flagellar FlaF family protein [Rhodobacteraceae bacterium KLH11]
          Length = 124

 Score = 73.4 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 40/100 (40%), Gaps = 2/100 (2%)

Query: 16  CRKREHWILDRSISLLSIAHK-SLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVK 74
            R  E+  + +    L  A      +    V+AL    R+W V    +   +N LP  ++
Sbjct: 21  PRDTEYEAISKITHRLKAAAARKGTDFGGFVQALHENRRLWNVLATGVADTENALPSALR 80

Query: 75  LNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
             +  +  +      ++  NK+   + ++++   V  GL+
Sbjct: 81  ARIFYLAEFTEHHSSQVLGNKA-GVEPLLEINMAVLRGLR 119


>gi|83955106|ref|ZP_00963762.1| flaF protein [Sulfitobacter sp. NAS-14.1]
 gi|83840435|gb|EAP79608.1| flaF protein [Sulfitobacter sp. NAS-14.1]
          Length = 133

 Score = 73.0 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 13/121 (10%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAV-----------EALFYTS 52
            Y  TI  +  + R+ E  IL    S L    ++   + +             + L+   
Sbjct: 5   AYKRTISHT-EDPRQIERRILASVTSKLENKFEAFDGAAEKSQKLQMLADGLRDTLWENQ 63

Query: 53  RVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDG 112
           RVW+ F  DL  +DN L  +++  LIS+ LWV    + +    S + + +ID+   + +G
Sbjct: 64  RVWLTFKADLAEKDNGLTADLRAALISLALWVENHTKAVLSG-SKNVKPLIDINRSIING 122

Query: 113 L 113
           L
Sbjct: 123 L 123


>gi|126464888|ref|YP_001041864.1| flagellar biosynthesis regulatory protein FlaF [Rhodobacter
           sphaeroides ATCC 17029]
 gi|126106703|gb|ABN79228.1| flagellar FlaF family protein [Rhodobacter sphaeroides ATCC 17029]
          Length = 121

 Score = 73.0 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 49/113 (43%), Gaps = 2/113 (1%)

Query: 2   RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLP-NSKQAVEALFYTSRVWVVFIQ 60
           R  Y    Q S+   R  E+ +L +  +LL    +          +A+    ++W+ F  
Sbjct: 3   RTAYSAASQGSARTPRSTEYALLAKVTALLKETDRHDALAFPALAQAIEQNRKLWLRFAL 62

Query: 61  DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
           D+   DN LP++++  +  +   V +   R+  +++     ++D+   V  GL
Sbjct: 63  DVAHPDNELPRDLRARIFYLYEIVQQHSARVLAHRA-DTGLLVDINRAVMRGL 114


>gi|316932810|ref|YP_004107792.1| flagellar FlaF family protein [Rhodopseudomonas palustris DX-1]
 gi|315600524|gb|ADU43059.1| flagellar FlaF family protein [Rhodopseudomonas palustris DX-1]
          Length = 122

 Score = 72.6 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 52/113 (46%), Gaps = 2/113 (1%)

Query: 3   QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAV-EALFYTSRVWVVFIQD 61
           Q Y  T Q ++         +L  +  L  +           + EAL +  ++W +F+ +
Sbjct: 6   QAYARTAQRTASPREIEAQALLKAAKQLQDVVTNWDEKGAIGLQEALMFNRKLWSIFVSE 65

Query: 62  LVSEDNHLPQEVKLNLISIGLWVLKECERIR-RNKSNSYQDIIDVISIVRDGL 113
            + +DN    E++ N+ +IG++VL +   ++ + +    Q +ID+   +  GL
Sbjct: 66  AMRDDNPQSIEIRQNIANIGVFVLSQSSALQIKPEVERLQALIDINRNIAAGL 118


>gi|221634510|ref|YP_002523198.1| FlaF protein [Rhodobacter sphaeroides KD131]
 gi|221163383|gb|ACM04345.1| FlaF protein [Rhodobacter sphaeroides KD131]
          Length = 126

 Score = 72.3 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 49/113 (43%), Gaps = 2/113 (1%)

Query: 2   RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLP-NSKQAVEALFYTSRVWVVFIQ 60
           R  Y    Q S+   R  E+ +L +  +LL    +          +A+    ++W+ F  
Sbjct: 8   RTAYSAARQGSARTPRSTEYALLAKVTALLKETDRHDALAFPALAQAIEQNRKLWLRFAL 67

Query: 61  DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
           D+   DN LP++++  +  +   V +   R+  +++     ++D+   V  GL
Sbjct: 68  DVAHPDNELPRDLRARIFYLYEIVQQHSARVLAHRA-DTGLLVDINRAVMRGL 119


>gi|84502365|ref|ZP_01000501.1| hypothetical protein OB2597_20156 [Oceanicola batsensis HTCC2597]
 gi|84389177|gb|EAQ01974.1| hypothetical protein OB2597_20156 [Oceanicola batsensis HTCC2597]
          Length = 132

 Score = 72.3 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 45/121 (37%), Gaps = 13/121 (10%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLS-----------IAHKSLPNSKQAVEALFYTS 52
            Y  TI+ES    R+ E  +  R    L             A ++   +      L    
Sbjct: 5   AYKRTIRES-ESPRQIERRVFLRVTGELEKKSTPFDKAASRADRADLLAGGLRSHLAENL 63

Query: 53  RVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDG 112
           ++W     DL   +N LP ++K  LIS+ L+V ++        S     ++ +   +  G
Sbjct: 64  KLWSTIKHDLSQPENGLPVQLKAGLISLALFVERQTANCL-GGSAGLGVLVQINQNLISG 122

Query: 113 L 113
           L
Sbjct: 123 L 123


>gi|125654645|ref|YP_001033839.1| flagellar biosynthesis regulatory protein FlaF [Rhodobacter
           sphaeroides 2.4.1]
 gi|332561332|ref|ZP_08415647.1| flagellar biosynthesis regulatory protein FlaF [Rhodobacter
           sphaeroides WS8N]
 gi|77386305|gb|ABA81734.1| possible FlaF protein [Rhodobacter sphaeroides 2.4.1]
 gi|332274131|gb|EGJ19448.1| flagellar biosynthesis regulatory protein FlaF [Rhodobacter
           sphaeroides WS8N]
          Length = 121

 Score = 72.3 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 49/113 (43%), Gaps = 2/113 (1%)

Query: 2   RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLP-NSKQAVEALFYTSRVWVVFIQ 60
           R  Y    Q S+   R  E+ +L +  +LL    +          +A+    ++W+ F  
Sbjct: 3   RTAYSAARQGSARTPRSTEYALLAKVTALLKETDRHDALAFPALAQAIEQNRKLWLRFAL 62

Query: 61  DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
           D+   DN LP++++  +  +   V +   R+  +++     ++D+   V  GL
Sbjct: 63  DVAHPDNELPRDLRARIFYLYEIVQQHSARVLAHRA-DTGLLVDINRAVMRGL 114


>gi|253702413|ref|YP_003023602.1| flagellar biosynthesis regulatory protein FlaF [Geobacter sp. M21]
 gi|251777263|gb|ACT19844.1| flagellar FlaF family protein [Geobacter sp. M21]
          Length = 129

 Score = 70.7 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 54/110 (49%), Gaps = 4/110 (3%)

Query: 9   IQESSIECRKREHWILDRSISLLSI-AHKSLPNSKQA--VEALFYTSRVWVVFIQDLVSE 65
           IQ+ S+  R+ E  +L ++  +L           ++A  +EA+ Y  +VW  F  +L   
Sbjct: 13  IQKESMSGRELEASVLTKAGLMLKAVQDNWDAPDREAKMLEAIKYNQKVWSFFQAELSEP 72

Query: 66  DNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDI-IDVISIVRDGLK 114
            + +P++++ +L+++ L+V K    +    S     I ID+   +  GL+
Sbjct: 73  GHPMPKKLREDLLNLSLFVDKRFFEVMAFPSPEKLGIVIDINFNIAAGLR 122


>gi|89068720|ref|ZP_01156106.1| hypothetical protein OG2516_06766 [Oceanicola granulosus HTCC2516]
 gi|89045683|gb|EAR51745.1| hypothetical protein OG2516_06766 [Oceanicola granulosus HTCC2516]
          Length = 132

 Score = 70.3 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 53/121 (43%), Gaps = 13/121 (10%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLSIAHKS---LPNSKQAV--------EALFYTS 52
            Y  TI+ES    R+ E  +L +  + L  A ++      + + +        +AL    
Sbjct: 5   AYKRTIRESETP-RQIERRVLAQLTARLEDAAQAYDTAATAPERIAILAGGLRDALAENV 63

Query: 53  RVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDG 112
            VW+ F  DL S  N LP  +++ LIS+ LW+ K+  RI          +  V   V DG
Sbjct: 64  TVWLHFRYDLSSPANELPPALRVQLISLSLWIEKQTNRIL-GGGQGLVQLAAVNRSVVDG 122

Query: 113 L 113
           L
Sbjct: 123 L 123


>gi|154252991|ref|YP_001413815.1| flagellar FlaF family protein [Parvibaculum lavamentivorans DS-1]
 gi|154156941|gb|ABS64158.1| flagellar FlaF family protein [Parvibaculum lavamentivorans DS-1]
          Length = 125

 Score = 69.6 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 52/115 (45%), Gaps = 5/115 (4%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPN--SKQAVEALFYTSRVWVVFIQD 61
            Y    + ++ + R+ E  IL R+   L     +  N  +    +AL Y  R+W VF   
Sbjct: 7   AYANASRMATKDPREFEATILTRAAGQLQRIRDNWTNETASALRDALLYNRRIWTVFAAS 66

Query: 62  LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNS---YQDIIDVISIVRDGL 113
              +++ LP+E+K N+ ++ +++ K    I  ++  +      +I +   +  GL
Sbjct: 67  AAEKEHPLPREIKQNIANLAIFIFKRTSEIESSREPAPQLLDTLIMINREIAAGL 121


>gi|118588728|ref|ZP_01546136.1| putative flagellar protein FlaF [Stappia aggregata IAM 12614]
 gi|118438714|gb|EAV45347.1| putative flagellar protein FlaF [Stappia aggregata IAM 12614]
          Length = 94

 Score = 69.2 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 42/86 (48%), Gaps = 1/86 (1%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECE 89
            L     +  +  +  +AL Y  ++W + +    S ++ LPQ++K N+ ++G++V K+  
Sbjct: 8   QLIKDEWANSSLAEKDDALVYNRKLWTILVTSATSAESELPQDIKNNIATLGVFVFKQTM 67

Query: 90  RIRRNKSNS-YQDIIDVISIVRDGLK 114
            +      +    +I +   + +GL+
Sbjct: 68  TVMTTDDENKLDTLISINRSIAEGLR 93


>gi|189426400|ref|YP_001953577.1| flagellar biosynthesis regulatory protein FlaF [Geobacter lovleyi
           SZ]
 gi|189422659|gb|ACD97057.1| flagellar FlaF family protein [Geobacter lovleyi SZ]
          Length = 125

 Score = 68.8 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 54/113 (47%), Gaps = 4/113 (3%)

Query: 6   HETIQESSIECRKREHWILDRSISLL-SIAHKSLPNSKQ--AVEALFYTSRVWVVFIQDL 62
           + ++Q+ ++  R+ E  +L R+  +L  +        +    +EA+ +  +VW  F  +L
Sbjct: 9   YTSMQKETLSGRELEASVLTRAGLMLKQVQENWAAPDRDEKLLEAIKFNQKVWSFFQAEL 68

Query: 63  VSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNS-YQDIIDVISIVRDGLK 114
              +N LP  +K +++++ L++ K    +  +        ++D+   +  GL+
Sbjct: 69  SDPENPLPTALKQDILNLSLFIDKRLFEVMADPDKDKLTIVVDIDFNIAAGLR 121


>gi|197120104|ref|YP_002140531.1| flagellar biosynthesis regulatory protein FlaF [Geobacter
           bemidjiensis Bem]
 gi|197089464|gb|ACH40735.1| flagellar biogenesis regulator FlaF [Geobacter bemidjiensis Bem]
          Length = 129

 Score = 68.8 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 54/110 (49%), Gaps = 4/110 (3%)

Query: 9   IQESSIECRKREHWILDRSISLLSI-AHKSLPNSKQA--VEALFYTSRVWVVFIQDLVSE 65
           IQ+ S+  R+ E  +L ++  +L           ++A  +EA+ Y  +VW  F  +L   
Sbjct: 13  IQKESMSGRELEASVLTKAGLMLKAVQDNWDAPDREAKMLEAIKYNQKVWSFFQAELSEP 72

Query: 66  DNHLPQEVKLNLISIGLWVLKECERIRRNKS-NSYQDIIDVISIVRDGLK 114
            + +P++++ +L+++ L+V K    +    S      ++D+   +  GL+
Sbjct: 73  GHPMPKKLREDLLNLSLFVDKRFFEVMAFPSAEKLGIVVDINFNIAAGLR 122


>gi|322421644|ref|YP_004200867.1| flagellar FlaF family protein [Geobacter sp. M18]
 gi|320128031|gb|ADW15591.1| flagellar FlaF family protein [Geobacter sp. M18]
          Length = 131

 Score = 68.4 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 54/110 (49%), Gaps = 4/110 (3%)

Query: 9   IQESSIECRKREHWILDRSISLLSIAHK-SLPNSKQA--VEALFYTSRVWVVFIQDLVSE 65
           IQ+ S+  R+ E  +L ++  +L    +      ++   ++A+ Y  +VW  F  +L   
Sbjct: 13  IQKESMSGRELEASVLTKAGLMLKAVQESWDAPDRETKMLDAIKYNQKVWSFFQAELTEP 72

Query: 66  DNHLPQEVKLNLISIGLWVLKECERIRRNKS-NSYQDIIDVISIVRDGLK 114
            + +P++++ +L+++ L+V K    +    +      +ID+   +  GL+
Sbjct: 73  GHPMPKKLREDLLNLSLFVDKRFFEVMAFPTPEKLSIVIDINFNIAAGLR 122


>gi|159045900|ref|YP_001534694.1| flagellar biosynthesis regulatory protein FlaF [Dinoroseobacter
           shibae DFL 12]
 gi|157913660|gb|ABV95093.1| flagellar biosynthesis regulatory protein FlaF [Dinoroseobacter
           shibae DFL 12]
          Length = 123

 Score = 68.4 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 40/94 (42%), Gaps = 2/94 (2%)

Query: 20  EHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLIS 79
           E+ +  +  S L  + KS    +   +A+    R+W+    D+  + N+LP E++  +  
Sbjct: 25  EYELFAKMTSALVQSSKSG-KFEAIAKAVHDNRRLWLALAADVSDDANNLPVELRAQVFY 83

Query: 80  IGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
           +  +      ++   K      ++++   +  GL
Sbjct: 84  LAEFTQHHSSKVLTEKVP-VDPLVEINRSIMSGL 116


>gi|304321142|ref|YP_003854785.1| flagellar protein FlaF [Parvularcula bermudensis HTCC2503]
 gi|303300044|gb|ADM09643.1| flagellar protein FlaF, putative [Parvularcula bermudensis
           HTCC2503]
          Length = 127

 Score = 67.6 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 55/111 (49%), Gaps = 3/111 (2%)

Query: 5   YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNS-KQAVEALFYTSRVWVVFIQDLV 63
           Y +  ++S+   R+ E  +L +  + ++ A  S P   ++ V A+     +W   I DL+
Sbjct: 9   YAQV-RKSTASGREVEIQLLTKIAAEMANADPSTPEGFRELVTAVHRNMEMWTALIVDLL 67

Query: 64  SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
            E+N + Q +K+ L+ +G + L    ++   ++   + +I +   +  GLK
Sbjct: 68  QEENKIDQTLKVGLLKLGQFSLVHSRKVVCRQAE-PEVLISINRQIAAGLK 117


>gi|144897700|emb|CAM74564.1| Flagellar FlaF [Magnetospirillum gryphiswaldense MSR-1]
          Length = 145

 Score = 67.3 bits (163), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 51/110 (46%), Gaps = 3/110 (2%)

Query: 5   YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64
           Y+   Q      R+ E W L  +   +S+A K    ++  + A+    R+W +F  +L  
Sbjct: 11  YNSVPQ--PGNPRQTEAWALTEAARRMSLAQKEGVATEDLLVAVRLNWRLWTIFQAELSG 68

Query: 65  EDNHLPQEVKLNLISIGLWVLKECERIRRNK-SNSYQDIIDVISIVRDGL 113
           E++ LP +++++++S+  ++ K    I           +I++   +  GL
Sbjct: 69  EESALPDQMRMDMLSLCNFIDKRSVDIIAEPLPEKLDVLININRQIAAGL 118


>gi|170751769|ref|YP_001758029.1| flagellar FlaF family protein [Methylobacterium radiotolerans JCM
           2831]
 gi|170658291|gb|ACB27346.1| flagellar FlaF family protein [Methylobacterium radiotolerans JCM
           2831]
          Length = 123

 Score = 66.9 bits (162), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 53/114 (46%), Gaps = 4/114 (3%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQA--VEALFYTSRVWVVFIQD 61
            Y +T   S++  R+ E  +L ++   L  A + L +       EAL +  RVW +   +
Sbjct: 7   AYAKT-SHSALSPREAESAVLLKAAQKLIGASQGLASGDAGRINEALTFNQRVWTLLTSE 65

Query: 62  LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKS-NSYQDIIDVISIVRDGLK 114
             S+ N LP +VK  +  +G++VL+ C       +      ++ + + +  GL+
Sbjct: 66  ATSDVNPLPADVKQGVGRLGVFVLQSCIDTMIAPTPEKIATLVSINNHIAAGLQ 119


>gi|220921350|ref|YP_002496651.1| flagellar FlaF family protein [Methylobacterium nodulans ORS 2060]
 gi|219945956|gb|ACL56348.1| flagellar FlaF family protein [Methylobacterium nodulans ORS 2060]
          Length = 121

 Score = 66.9 bits (162), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 18/113 (15%), Positives = 40/113 (35%), Gaps = 1/113 (0%)

Query: 3   QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDL 62
             Y +  Q +          ++  +  L ++            EAL +  +VW +     
Sbjct: 6   HAYAKVSQVALTPREAEAAVLIKAAARLQAVQDNWAEQQAGLNEALTFNQKVWTLLSTAA 65

Query: 63  VSEDNHLPQEVKLNLISIGLWVLKEC-ERIRRNKSNSYQDIIDVISIVRDGLK 114
              D  LP E+K ++  +G +V     + +    +     +I +   +  GL+
Sbjct: 66  TEPDAPLPPELKQSMARLGAFVFTRTFDAMVEPAAEKLTALIRINREIASGLR 118


>gi|118581735|ref|YP_902985.1| flagellar biosynthesis regulatory protein FlaF [Pelobacter
           propionicus DSM 2379]
 gi|118504445|gb|ABL00928.1| flagellar FlaF family protein [Pelobacter propionicus DSM 2379]
          Length = 127

 Score = 65.7 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 51/106 (48%), Gaps = 5/106 (4%)

Query: 14  IECRKREHWILDRS-ISLLSIAHKSLPNSKQAV--EALFYTSRVWVVFIQDLVSEDNHLP 70
           +  R+ E  +L ++ + L     K     + A+  EA+ Y  +VW  F  +L   DN LP
Sbjct: 16  MSPRELEASVLTKAGLKLKQCQEKWNTPERNALLDEAIRYNQKVWSFFQSELSMPDNPLP 75

Query: 71  QEVKLNLISIGLWVLKECERIRRNKS--NSYQDIIDVISIVRDGLK 114
           Q+++ +++++ L++ K    +    +       +ID+   +  GL+
Sbjct: 76  QKLREDILNLSLFIDKRLFEVLAFPNAPERLTIVIDINFNIAAGLR 121


>gi|170739223|ref|YP_001767878.1| flagellar FlaF family protein [Methylobacterium sp. 4-46]
 gi|168193497|gb|ACA15444.1| flagellar FlaF family protein [Methylobacterium sp. 4-46]
          Length = 121

 Score = 63.4 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 45/113 (39%), Gaps = 3/113 (2%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLSI-AHKSLPNSKQAVEALFYTSRVWVVFIQDL 62
            Y +  Q +++  R+ E  +L ++ + L               EAL +  +VW +     
Sbjct: 7   AYAKVAQ-AALTPREAEAAVLIKAAARLQAIQDNWTDQQAGLNEALTFNQKVWTLLSTAA 65

Query: 63  VSEDNHLPQEVKLNLISIGLWVLKEC-ERIRRNKSNSYQDIIDVISIVRDGLK 114
              D  LP ++K ++  +G +V     + +    +     +I +   +  GL+
Sbjct: 66  TEPDAPLPADLKQSMAQLGAFVFTRTFDAMIEPHAEKLTALIRINRELASGLR 118


>gi|126730143|ref|ZP_01745955.1| flagellar protein FlaF, putative [Sagittula stellata E-37]
 gi|126709523|gb|EBA08577.1| flagellar protein FlaF, putative [Sagittula stellata E-37]
          Length = 81

 Score = 63.4 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 1/72 (1%)

Query: 42  KQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQD 101
            + VEAL    R+W     D+  E N LPQ+++  +  +  +V ++  ++   K      
Sbjct: 4   PKLVEALSDNQRLWTTLAIDVADEGNALPQDLRARIFYLAEFVQQQTSKVLTRKGR-ITP 62

Query: 102 IIDVISIVRDGL 113
           ++++ + +  GL
Sbjct: 63  LLEINAAILKGL 74


>gi|296533830|ref|ZP_06896366.1| conserved hypothetical protein [Roseomonas cervicalis ATCC 49957]
 gi|296265848|gb|EFH11937.1| conserved hypothetical protein [Roseomonas cervicalis ATCC 49957]
          Length = 123

 Score = 63.4 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 41/98 (41%), Gaps = 6/98 (6%)

Query: 16  CRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKL 75
            R+ E      + + L  A ++   ++   EAL    R+W   +  L + +N LP  ++ 
Sbjct: 28  PREEEAAAFRSAATTLLAAREAGHEARG--EALRLNRRLWQAVLIALAAPENALPMPLRQ 85

Query: 76  NLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
            L ++   +L+E +R R         +  +   +  GL
Sbjct: 86  GLATLATTMLREMDRNR----PDLAFLAAINQEIAAGL 119


>gi|260432288|ref|ZP_05786259.1| flagellar biosynthesis regulatory protein FlaF [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260416116|gb|EEX09375.1| flagellar biosynthesis regulatory protein FlaF [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 124

 Score = 63.0 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 47/114 (41%), Gaps = 3/114 (2%)

Query: 2   RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQA-VEALFYTSRVWVVFIQ 60
           ++ Y ++   +    R  E+  + +    L  A     +     V+AL    R+W V   
Sbjct: 8   QRAYAQSAAPTRTP-RDTEYEAISKITHRLKAAAARKASDYSGFVQALHDNRRLWSVLAN 66

Query: 61  DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
            +   DN LP +++  +  +  +  +   ++   K+   + ++++   V  GL+
Sbjct: 67  GVADSDNALPNDLRARIFYLSEFTEQHTGQVLAKKA-DVEPLLEINLAVLRGLR 119


>gi|260574410|ref|ZP_05842414.1| flagellar FlaF family protein [Rhodobacter sp. SW2]
 gi|259023306|gb|EEW26598.1| flagellar FlaF family protein [Rhodobacter sp. SW2]
          Length = 126

 Score = 62.6 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 45/101 (44%), Gaps = 6/101 (5%)

Query: 17  RKREHWILDRSISLLSIA---HKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEV 73
           R  E+ +L R+   L  +    K   +      AL    R+W     D+   +N LP  +
Sbjct: 23  RGIEYDLLARTTHQLKESWTRRKEDFSGFAT--ALNDNLRLWSALAADVAEPENGLPAPL 80

Query: 74  KLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  L  +  +  +   + R++++ S + ++D+ + V  GL+
Sbjct: 81  RAQLFYLYEFTAEHSRKARQDQA-SVEVLVDINTAVMRGLR 120


>gi|126734098|ref|ZP_01749845.1| flagellar protein FlaF, putative [Roseobacter sp. CCS2]
 gi|126716964|gb|EBA13828.1| flagellar protein FlaF, putative [Roseobacter sp. CCS2]
          Length = 74

 Score = 62.2 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 45  VEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIID 104
           + A+    R+W     D+  + N LP+E++  +  +  +     +++ R K+     +ID
Sbjct: 1   MAAIHDNRRMWTTMAVDVADKGNALPKELRAQIFYLAEFTDHHSQQVIRGKA-DPAALID 59

Query: 105 VISIVRDGL 113
           +   V  GL
Sbjct: 60  INMAVLKGL 68


>gi|188580879|ref|YP_001924324.1| flagellar FlaF family protein [Methylobacterium populi BJ001]
 gi|179344377|gb|ACB79789.1| flagellar FlaF family protein [Methylobacterium populi BJ001]
          Length = 124

 Score = 62.2 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 43/112 (38%), Gaps = 2/112 (1%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
            Y +  +  ++  R+ E  +L ++   L      +       EAL +  RVW +      
Sbjct: 7   AYAKVAR-VALSPREAEAAVLLKAAGRLQALGAGVEAGPALNEALGFNQRVWTILASAAT 65

Query: 64  SEDNHLPQEVKLNLISIGLWVLKEC-ERIRRNKSNSYQDIIDVISIVRDGLK 114
              N LP +V+  +  +  +V     + +        + ++ + + +  GL+
Sbjct: 66  DPANPLPVDVRHGMAQLSAYVFHTIMDTMIEPTREKIESLVSLNNHIAAGLQ 117


>gi|254488350|ref|ZP_05101555.1| flagellar protein, putative [Roseobacter sp. GAI101]
 gi|214045219|gb|EEB85857.1| flagellar protein, putative [Roseobacter sp. GAI101]
          Length = 88

 Score = 61.9 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 1/70 (1%)

Query: 45  VEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIID 104
           +EAL    ++W     ++   DN LP+E++  L  +  +       + RNK ++   +++
Sbjct: 14  LEALHENRKLWRTLALNVSQSDNGLPEELRARLYYLSEFTNHHTSEVIRNKISAI-PLVE 72

Query: 105 VISIVRDGLK 114
           V + +  GLK
Sbjct: 73  VNTAILRGLK 82


>gi|23005490|ref|ZP_00048277.1| hypothetical protein Magn03001225 [Magnetospirillum
          magnetotacticum MS-1]
          Length = 64

 Score = 58.4 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 2  RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSL-PNSKQAVEALFYTSRVWVVFIQ 60
          R  Y E ++++    R RE    DR++ LL  A         +   A+ Y   +W + I 
Sbjct: 3  RMSYSEIMEDAPDLGRAREREAFDRALGLLQSAEARGVTAGHERTAAISYIQDLWNLLIA 62


>gi|163851039|ref|YP_001639082.1| flagellar FlaF family protein [Methylobacterium extorquens PA1]
 gi|218529868|ref|YP_002420684.1| flagellar FlaF family protein [Methylobacterium chloromethanicum
           CM4]
 gi|240138172|ref|YP_002962644.1| putative flagellar protein FlaF [Methylobacterium extorquens AM1]
 gi|254560732|ref|YP_003067827.1| flagellar protein FlaF [Methylobacterium extorquens DM4]
 gi|163662644|gb|ABY30011.1| flagellar FlaF family protein [Methylobacterium extorquens PA1]
 gi|218522171|gb|ACK82756.1| flagellar FlaF family protein [Methylobacterium chloromethanicum
           CM4]
 gi|240008141|gb|ACS39367.1| putative flagellar protein FlaF [Methylobacterium extorquens AM1]
 gi|254268010|emb|CAX23878.1| putative flagellar protein FlaF [Methylobacterium extorquens DM4]
          Length = 124

 Score = 55.7 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/101 (15%), Positives = 40/101 (39%), Gaps = 1/101 (0%)

Query: 15  ECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVK 74
             R+ E  +L ++   L      +       +AL +  RVW +         + LP EV+
Sbjct: 17  SPREAEAAVLLKAAGRLQSLGSQVEAGPALNDALTFNQRVWTILASAATEPSSPLPVEVR 76

Query: 75  LNLISIGLWVLKEC-ERIRRNKSNSYQDIIDVISIVRDGLK 114
            ++  +  +V     + +    +   + ++ + + +  GL+
Sbjct: 77  TSMAQLSAYVFHTILDTMIEPTAQKIESLVSLNNHIAAGLQ 117


>gi|254469993|ref|ZP_05083397.1| flagellar FlaF [Pseudovibrio sp. JE062]
 gi|211960304|gb|EEA95500.1| flagellar FlaF [Pseudovibrio sp. JE062]
          Length = 99

 Score = 55.3 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 43/93 (46%), Gaps = 2/93 (2%)

Query: 24  LDRSISLLSIAHKSLPNSKQ-AVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGL 82
           +  +  L  +  +    S++   E L +   +W +F+ +  +  + LP E++ N+ ++ L
Sbjct: 1   MKAAARLSVLQREWDTVSREERNETLIFNRTLWTIFVTEATASHSELPLELQNNIANLAL 60

Query: 83  WVLKECERIRRNKS-NSYQDIIDVISIVRDGLK 114
           ++      +   +   + + +I++   +  GL+
Sbjct: 61  FMFNRTIEMMGGEEPEALETMININKSLAAGLR 93


>gi|144897636|emb|CAM74500.1| Flagellar FlaF [Magnetospirillum gryphiswaldense MSR-1]
          Length = 122

 Score = 55.3 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 48/107 (44%), Gaps = 4/107 (3%)

Query: 9   IQESSIECRKREHWILDRSISLLSIA-HKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDN 67
            Q S +  R+ +     ++ +LL      +    ++A  AL    R+W    + L   D+
Sbjct: 16  AQGSVLPLRQADALAFTQAANLLEDCLRSADRTQREA--ALKRNQRLWTQVQRLLSRSDH 73

Query: 68  HLPQEVKLNLISIGLWVLKEC-ERIRRNKSNSYQDIIDVISIVRDGL 113
            LP +V+ NL+ +  ++ ++  + +    ++  + ++ +   V  GL
Sbjct: 74  PLPADVRANLLDLSHFIDRQTVKALISGAADDLRPLVKINREVAAGL 120


>gi|167043519|gb|ABZ08215.1| putative flagellar protein FlaF [uncultured marine microorganism
           HF4000_APKG2J17]
          Length = 125

 Score = 55.3 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 43/100 (43%), Gaps = 1/100 (1%)

Query: 15  ECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVK 74
             R  E     ++  LL+ A     +      AL +   +  +   DL  + +HLP  ++
Sbjct: 18  PPRAAEAEAFIKAARLLNQASAGPFDYDAYASALRFNQTLRTIIQADLGRDGSHLPAGLR 77

Query: 75  LNLISIGLWVLKECERIRRNKSNSYQD-IIDVISIVRDGL 113
            +++++ L+V K+  +   +    Y   ++++   +  GL
Sbjct: 78  SDILNLSLYVDKQTLKALSDPKAEYLGELMEIDRAIARGL 117


>gi|288962053|ref|YP_003452363.1| hypothetical protein AZL_c05260 [Azospirillum sp. B510]
 gi|288914333|dbj|BAI75819.1| hypothetical protein AZL_c05260 [Azospirillum sp. B510]
          Length = 181

 Score = 54.9 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 2/103 (1%)

Query: 12  SSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQ 71
           +S   R  E W L  +     IA     + K   EAL    R+W +F   +  ED   P 
Sbjct: 20  TSDNPRDVEAWALAEAARR-IIAASHAKDEKAFREALQLNQRLWTIFQAAITEEDCGHPP 78

Query: 72  EVKLNLISIGLWVLKE-CERIRRNKSNSYQDIIDVISIVRDGL 113
           EV+ N+ ++ L V +E   R+          ++++   V  GL
Sbjct: 79  EVRTNIAALSLLVDRETTNRLVDLDFGKIDTLVNINRNVASGL 121


>gi|46200759|ref|ZP_00056440.2| hypothetical protein Magn03011141 [Magnetospirillum magnetotacticum
           MS-1]
          Length = 124

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 44/110 (40%), Gaps = 3/110 (2%)

Query: 6   HETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSE 65
            E    SS+   ++E   L  +   L  A  S   + + V AL +   VWV       S 
Sbjct: 3   EEIGDLSSLPLPEQEALSLAEAAIALDRARSSKDRAAELVAALNHNLEVWVAIRSLARSP 62

Query: 66  DNHLPQEVKLNLISIGLWVLKE--CERIRRNKSNSYQDIIDVISIVRDGL 113
            + LP ++K NLI +  +V             S S   +I++   + +GL
Sbjct: 63  GSPLPPDLKANLIRLSEFVAHTTFTNGATIGDS-SLNTLININMQLAEGL 111


>gi|83309788|ref|YP_420052.1| hypothetical protein amb0689 [Magnetospirillum magneticum AMB-1]
 gi|82944629|dbj|BAE49493.1| hypothetical protein [Magnetospirillum magneticum AMB-1]
          Length = 124

 Score = 48.4 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 43/109 (39%), Gaps = 1/109 (0%)

Query: 6   HETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSE 65
            E    SS+   ++E   L  +   L  A      + + V AL +   VWV       S 
Sbjct: 3   EEIGDLSSLPLPEQEALSLAEAAIALDRARSGENRAAELVAALNHNLEVWVAIRSLARSP 62

Query: 66  DNHLPQEVKLNLISIGLWVLKEC-ERIRRNKSNSYQDIIDVISIVRDGL 113
            + LP ++K NLI +  +V             ++   +I++   + +GL
Sbjct: 63  GSALPPDLKANLIRLSEFVAHTTFTNGASIGDSALNTLININMQLAEGL 111


>gi|46200761|ref|ZP_00056442.2| hypothetical protein Magn03011143 [Magnetospirillum magnetotacticum
           MS-1]
          Length = 161

 Score = 48.4 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 42/102 (41%), Gaps = 4/102 (3%)

Query: 15  ECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDL-VSEDNHLPQEV 73
             R+ E W L  +   ++ A +  P      +AL    ++W +F  DL    +     E 
Sbjct: 18  NPRETEAWALTEAARRMASASRGEPEG--MRDALRLNWKLWTIFQADLIGKVEAGETTET 75

Query: 74  KLNLISIGLWV-LKECERIRRNKSNSYQDIIDVISIVRDGLK 114
            +N++S+  +V       +    +   + ++++   +  GL+
Sbjct: 76  VVNMLSLCQFVDFHTVAALTEPDAPKLEVLVNINRNIASGLR 117


>gi|83309790|ref|YP_420054.1| hypothetical protein amb0691 [Magnetospirillum magneticum AMB-1]
 gi|82944631|dbj|BAE49495.1| hypothetical protein [Magnetospirillum magneticum AMB-1]
          Length = 165

 Score = 47.2 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 42/102 (41%), Gaps = 4/102 (3%)

Query: 15  ECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDL-VSEDNHLPQEV 73
             R+ E W L  +   ++ A +  P      E+L    ++W +F  DL    +     E 
Sbjct: 22  NPRETEAWALTEAARRMASASRGEPEG--MRESLRLNWKLWTIFQADLIGKAEAGEATET 79

Query: 74  KLNLISIGLWV-LKECERIRRNKSNSYQDIIDVISIVRDGLK 114
            +N++S+  +V       +    +   + ++++   +  GL+
Sbjct: 80  VVNMLSLCQFVDFHTVAALTEPDAAKLEVLVNINRNIASGLR 121


>gi|58039254|ref|YP_191218.1| flagellin assembly protein [Gluconobacter oxydans 621H]
 gi|58001668|gb|AAW60562.1| Flagellin assembly protein [Gluconobacter oxydans 621H]
          Length = 140

 Score = 44.9 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 5/99 (5%)

Query: 15  ECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVK 74
             R+ E        +LL+ A          V AL    ++W +    +   D  LP  ++
Sbjct: 17  SSREVEVMAFRHVNALLTQASDHEAK----VAALAANLKLWSLLSLSVERVDCPLPPVLR 72

Query: 75  LNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
            +LI +G W ++             Q +ID+ + + +GL
Sbjct: 73  DDLIKVGSWAMRYSNSAFNAP-KDLQPLIDINNDMIEGL 110


>gi|239948270|ref|ZP_04700023.1| tetratricopeptide repeat-containing protein [Rickettsia
           endosymbiont of Ixodes scapularis]
 gi|239922546|gb|EER22570.1| tetratricopeptide repeat-containing protein [Rickettsia
           endosymbiont of Ixodes scapularis]
          Length = 689

 Score = 41.1 bits (95), Expect = 0.047,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 6/91 (6%)

Query: 3   QYYHETIQ--ESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQ 60
           + Y++ +Q  +     +K +H +  R  + +S A   L N+K   EAL Y  +   +FI 
Sbjct: 515 EAYNQVMQLYDMHKPVKKEDHEVFGRIFTQMSRAQLGLGNAK---EALDYARKARTIFIN 571

Query: 61  DLVSEDNHLPQEVKLNLISIGLWVLKECERI 91
           D    +N     V  + I +    + E + +
Sbjct: 572 DPSRPNNSRDIAVSPD-IYLAKACVAEADAL 601


>gi|222428594|gb|ACM50205.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 850

 Score = 41.1 bits (95), Expect = 0.049,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y    W + +        +  QE+K + IS+     + V 
Sbjct: 769 LLIAARGLEHLGRRGWEALKYC---WNLLL--------YWSQELKSSAISLLNTTAIVVA 817

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI      +++  I +   +R GL+
Sbjct: 818 EGTDRILEGLQTAFRAFIHIPRRIRQGLE 846


>gi|89069827|ref|ZP_01157162.1| flagellar protein FlaF, putative [Oceanicola granulosus HTCC2516]
 gi|89044628|gb|EAR50744.1| flagellar protein FlaF, putative [Oceanicola granulosus HTCC2516]
          Length = 62

 Score = 40.7 bits (94), Expect = 0.065,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
            ++   +N L ++++  L  +  +V  +  +  + +      +I+V + V  GL
Sbjct: 3   AEVADRNNALSEDLRARLFYLSEFVGYQTRKALKGQG-GVASLIEVNTAVMRGL 55


>gi|295239063|gb|ADF84323.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 864

 Score = 40.7 bits (94), Expect = 0.066,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y    W +          +  QE+K + +S+     + V 
Sbjct: 783 LLIAARIVGLLGRRGWEALKY---WWNLL--------QYWSQELKNSAVSLXXXXAIAVA 831

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +R+      +Y+ I ++   +R GL+
Sbjct: 832 EGTDRVIEGLQRAYRGICNIPRRIRQGLE 860


>gi|225348169|gb|ACN87123.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 848

 Score = 40.7 bits (94), Expect = 0.068,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A    P  ++  EAL Y   +W +          +  QE++ + +++     + V 
Sbjct: 767 LLIAARIVEPLGRRGWEALKY---LWNLL--------QYWIQELRNSAVNLLNTTAIAVA 815

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI       ++ II +   +R GL+
Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGLE 844


>gi|7799886|emb|CAB91080.1| Env protein [Human immunodeficiency virus 1]
          Length = 847

 Score = 40.7 bits (94), Expect = 0.078,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y   +W +          +  QE+K   IS+     + V 
Sbjct: 766 LLIAARSVDLLGRRGWEALKY---LWNLL--------QYWSQELKNRAISLLDATAIAVA 814

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI      +++ I+++   +R GL+
Sbjct: 815 EGTDRIIEIIQRTFRAILNIPRRIRQGLE 843


>gi|91176537|gb|ABE26658.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 861

 Score = 40.3 bits (93), Expect = 0.088,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 39/89 (43%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLIS----IGLWVL 85
           LL +        ++  EAL Y   +W +          +  QE+K + +S    I + V 
Sbjct: 780 LLIVTRLVELLGRRGWEALKY---LWNLL--------QYWSQELKNSAVSLLDAIAIAVA 828

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +R+      +++ I+++   +R GL+
Sbjct: 829 EGTDRVLEGLQRAFRAILNIPRRIRQGLE 857


>gi|83594178|ref|YP_427930.1| hypothetical protein Rru_A2846 [Rhodospirillum rubrum ATCC 11170]
 gi|83577092|gb|ABC23643.1| hypothetical protein Rru_A2846 [Rhodospirillum rubrum ATCC 11170]
          Length = 118

 Score = 40.3 bits (93), Expect = 0.089,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 39/107 (36%), Gaps = 7/107 (6%)

Query: 8   TIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDN 67
               +  +        +  S +L      +  +      AL    ++WV     +   DN
Sbjct: 10  IASSAGDDAFALTEAAVALSRAL------ATADKPALAAALEGNFQLWVGIRTLVSRSDN 63

Query: 68  HLPQEVKLNLISIGLWVLKECERIRRNKSNS-YQDIIDVISIVRDGL 113
            LPQ+VK NLI +  +  ++   +         + +I+    + +GL
Sbjct: 64  PLPQDVKDNLIRLSQYTAQKTFELHDGVDEDTVESLINTNLQIAEGL 110


>gi|222428545|gb|ACM50166.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 867

 Score = 40.3 bits (93), Expect = 0.091,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 15/87 (17%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL +        ++  EAL Y   +W +          +  QE+K + IS+     + V 
Sbjct: 786 LLIVTRTVELLGRRGWEALKY---LWNLL--------QYWIQELKNSAISLLNATAIAVA 834

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDG 112
           +  +RI      +++ II +   +R G
Sbjct: 835 EGTDRILEGLQRAFRAIIHIPRRIRQG 861


>gi|116518678|gb|ABJ99563.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 867

 Score = 40.3 bits (93), Expect = 0.091,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 15/87 (17%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL +        ++  EAL Y   +W +          +  QE+K + IS+     + V 
Sbjct: 786 LLIVTRTVELLGRRGWEALKY---LWNLL--------QYWIQELKNSAISLLNATAIAVA 834

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDG 112
           +  +RI      +++ II +   +R G
Sbjct: 835 EGTDRILEGLQRAFRAIIHIPRRIRQG 861


>gi|288962913|ref|YP_003453207.1| hypothetical protein AZL_e03180 [Azospirillum sp. B510]
 gi|288915179|dbj|BAI76663.1| hypothetical protein AZL_e03180 [Azospirillum sp. B510]
          Length = 193

 Score = 40.3 bits (93), Expect = 0.10,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 40/91 (43%), Gaps = 4/91 (4%)

Query: 27  SISLLSIAHKS-LPNSKQAVE-ALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWV 84
           SI LL  A       S + V  AL    ++W+     L+++D  +  EVK NL ++  +V
Sbjct: 59  SIVLLQAAGSLLDSESPEKVNVALDQNLKLWIAIKTVLLNDDCPVEPEVKANLRNLAQYV 118

Query: 85  LKECERIRRN--KSNSYQDIIDVISIVRDGL 113
           +       +   +++    +  +   + +GL
Sbjct: 119 VSTTMLATQGAIETSKLVSLARLNMNIAEGL 149


>gi|313511193|gb|ADR66761.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 850

 Score = 39.1 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLIS----IGLWVL 85
           LL +A       ++  E L Y   +W +          +  QE++ + IS    I + V 
Sbjct: 769 LLIVARIVELVGRRGWETLKY---LWNIL--------QYWGQELRNSAISLFNAIAIAVA 817

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI      +++  I +   +R GL+
Sbjct: 818 EGTDRIIEIGQRAFRAFIHIPRRIRQGLE 846


>gi|225348165|gb|ACN87121.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 848

 Score = 39.1 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 36/89 (40%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       +   EAL Y   +W +          +  QE++ + +++     + V 
Sbjct: 767 LLIAARIVELLGRGGWEALKY---LWNLL--------QYWIQELRNSAVNLLNTTAIAVA 815

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI       ++ II +   +R GL+
Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGLE 844


>gi|225348175|gb|ACN87126.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 848

 Score = 38.7 bits (89), Expect = 0.26,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y   +W +          +  QE++ + +++     + V 
Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLL--------QYWIQELRNSAVNLLNTTAIAVA 815

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI       ++ II +   +R GL+
Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGLE 844


>gi|225348177|gb|ACN87127.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 848

 Score = 38.7 bits (89), Expect = 0.26,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y   +W +          +  QE++ + +++     + V 
Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLL--------QYWIQELRNSAVNLLNTTAIAVA 815

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI       ++ II +   +R GL+
Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGLE 844


>gi|225348211|gb|ACN87144.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 848

 Score = 38.7 bits (89), Expect = 0.26,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y   +W +          +  QE++ + +++     + V 
Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLL--------QYWIQELRNSAVNLLNTTAIAVA 815

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI       ++ II +   +R GL+
Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGLE 844


>gi|225348181|gb|ACN87129.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 848

 Score = 38.7 bits (89), Expect = 0.26,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y   +W +          +  QE++ + +++     + V 
Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLL--------QYWIQELRNSAVNLLNTTAIAVA 815

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI       ++ II +   +R GL+
Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGLE 844


>gi|225348185|gb|ACN87131.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 848

 Score = 38.7 bits (89), Expect = 0.27,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y   +W +          +  QE++ + +++     + V 
Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLL--------QYWIQELRNSAVNLLNTTAIAVA 815

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI       ++ II +   +R GL+
Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGLE 844


>gi|225348167|gb|ACN87122.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 848

 Score = 38.7 bits (89), Expect = 0.27,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y   +W +          +  QE++ + +++     + V 
Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLL--------QYWIQELRNSAVNLLNTTAIAVA 815

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI       ++ II +   +R GL+
Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGLE 844


>gi|225348205|gb|ACN87141.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 848

 Score = 38.7 bits (89), Expect = 0.28,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y   +W +          +  QE++ + +++     + V 
Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLL--------QYWIQELRNSAVNLLNTTAIAVA 815

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI       ++ II +   +R GL+
Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGLE 844


>gi|225348189|gb|ACN87133.1| envelope glycoprotein [Human immunodeficiency virus 1]
 gi|225348191|gb|ACN87134.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 848

 Score = 38.7 bits (89), Expect = 0.28,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y   +W +          +  QE++ + +++     + V 
Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLL--------QYWIQELRNSAVNLLNTTAIAVA 815

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI       ++ II +   +R GL+
Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGLE 844


>gi|225348209|gb|ACN87143.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 848

 Score = 38.7 bits (89), Expect = 0.28,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y   +W +          +  QE++ + +++     + V 
Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLL--------QYWIQELRNSAVNLLNTTAIAVA 815

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI       ++ II +   +R GL+
Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGLE 844


>gi|225348207|gb|ACN87142.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 848

 Score = 38.7 bits (89), Expect = 0.28,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y   +W +          +  QE++ + +++     + V 
Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLL--------QYWIQELRNSAVNLLNTTAIAVA 815

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI       ++ II +   +R GL+
Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGLE 844


>gi|225348199|gb|ACN87138.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 848

 Score = 38.7 bits (89), Expect = 0.28,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y   +W +          +  QE++ + +++     + V 
Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLL--------QYWIQELRNSAVNLLNTTAIAVA 815

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI       ++ II +   +R GL+
Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGLE 844


>gi|225348193|gb|ACN87135.1| envelope glycoprotein [Human immunodeficiency virus 1]
 gi|225348195|gb|ACN87136.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 848

 Score = 38.7 bits (89), Expect = 0.28,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y   +W +          +  QE++ + +++     + V 
Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLL--------QYWIQELRNSAVNLLNTTAIAVA 815

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI       ++ II +   +R GL+
Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGLE 844


>gi|225348171|gb|ACN87124.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 843

 Score = 38.7 bits (89), Expect = 0.28,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y   +W +          +  QE++ + +++     + V 
Sbjct: 762 LLIAARIVELLGRRGWEALKY---LWNLL--------QYWIQELRNSAVNLLNTTAIAVA 810

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI       ++ II +   +R GL+
Sbjct: 811 EGTDRIIELVQRGFRAIIHIPRRIRQGLE 839


>gi|225348183|gb|ACN87130.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 848

 Score = 38.7 bits (89), Expect = 0.28,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y   +W +          +  QE++ + +++     + V 
Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLL--------QYWIQELRNSAVNLLNTTAIAVA 815

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI       ++ II +   +R GL+
Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGLE 844


>gi|225348179|gb|ACN87128.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 843

 Score = 38.7 bits (89), Expect = 0.28,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y   +W +          +  QE++ + +++     + V 
Sbjct: 762 LLIAARIVELLGRRGWEALKY---LWNLL--------QYWIQELRNSAVNLLNTTAIAVA 810

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI       ++ II +   +R GL+
Sbjct: 811 EGTDRIIELVQRGFRAIIHIPRRIRQGLE 839


>gi|225348173|gb|ACN87125.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 848

 Score = 38.7 bits (89), Expect = 0.28,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y   +W +          +  QE++ + +++     + V 
Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLL--------QYWIQELRNSAVNLLNTTAIAVA 815

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI       ++ II +   +R GL+
Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGLE 844


>gi|225348203|gb|ACN87140.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 848

 Score = 38.7 bits (89), Expect = 0.29,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y   +W +          +  QE++ + +++     + V 
Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLL--------QYWIQELRNSAVNLLNTTAIAVA 815

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI       ++ II +   +R GL+
Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGLE 844


>gi|225348201|gb|ACN87139.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 848

 Score = 38.7 bits (89), Expect = 0.29,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 15/88 (17%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y   +W +          +  QE++ + +++     + V 
Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLL--------QYWIQELRNSAVNLLNTTAIAVA 815

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGL 113
           +  +RI       ++ II +   +R GL
Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGL 843


>gi|225348197|gb|ACN87137.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 848

 Score = 38.7 bits (89), Expect = 0.29,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y   +W +          +  QE++ + +++     + V 
Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLL--------QYWIQELRNSAVNLLNTTAIAVA 815

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI       ++ II +   +R GL+
Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGLE 844


>gi|300113840|ref|YP_003760415.1| response regulator receiver modulated diguanylate
            cyclase/phosphodiesterase [Nitrosococcus watsonii C-113]
 gi|299539777|gb|ADJ28094.1| response regulator receiver modulated diguanylate
            cyclase/phosphodiesterase [Nitrosococcus watsonii C-113]
          Length = 1500

 Score = 38.4 bits (88), Expect = 0.30,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 12/118 (10%)

Query: 2    RQYYHETIQESSIECRKRE---HWILDRSISLLSIAHKSLPNSKQ--AVEALFYTSRVWV 56
             Q+Y   ++ ++++    E      L+++   L    +    + +   +EAL      W 
Sbjct: 1212 YQFYERGMETAAVKRLGLEAELRRALEKNEFTLYYQPQIDLGTGEITTLEALIR----WD 1267

Query: 57   VFIQDLVSEDNHLPQEVKLNLI-SIGLWVLKE-CERIRRNKSNSYQDI-IDVISIVRD 111
                 L+     +P   +  LI SIG+WVL+E C ++R      +    I V    R+
Sbjct: 1268 HPEHGLIPPSEFIPLAEETGLIASIGVWVLREACTQMRSWLQREFGPFRIAVNVSGRE 1325


>gi|297242447|gb|ADI24887.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 842

 Score = 38.4 bits (88), Expect = 0.31,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL +A       ++  EAL Y   +W +          +  QE+K + IS+     + V 
Sbjct: 761 LLIVARIVELLGRRGWEALKY---LWNLL--------QYWGQELKNSAISLLNATAIAVA 809

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI      +++ I+ +   +R GL+
Sbjct: 810 EGTDRIIEIGQRAFRAILHIPRRIRQGLE 838


>gi|222428535|gb|ACM50158.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 874

 Score = 38.4 bits (88), Expect = 0.35,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y    W   +Q       +  QE+K + +S+     + V 
Sbjct: 793 LLIAARIVELLGRRGWEALKY----WWSLLQ-------YWSQELKNSAVSLLNATAIAVA 841

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI      +++ II + + +R GL+
Sbjct: 842 EGTDRIIEVAQRAFRAIIHIPTRIRQGLE 870


>gi|186969217|gb|ACC97467.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 845

 Score = 38.0 bits (87), Expect = 0.43,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       +   EAL Y   +W +         ++  QE+K + IS+     + V 
Sbjct: 764 LLIAARTVGLLGRNGWEALKY---LWNLL--------SYWGQELKNSAISLFDTLAIAVA 812

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
              +R+      + + I+++ + +R GL+
Sbjct: 813 NWTDRVIEIGQRAGRAILNIPARIRQGLE 841


>gi|298205617|gb|ADI62034.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 855

 Score = 38.0 bits (87), Expect = 0.44,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 38/88 (43%), Gaps = 15/88 (17%)

Query: 31  LSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVLK 86
           L  A       ++  EA+ Y   +W +          +  QE+K + IS+     + V +
Sbjct: 775 LIAARTVELLGRRGWEAIKY---LWNLL--------QYWIQELKSSAISLFDTTAIAVAE 823

Query: 87  ECERIRRNKSNSYQDIIDVISIVRDGLK 114
             +RI       ++ I+++ + +R GL+
Sbjct: 824 GTDRIIEIIQRGFRAILNIPTRIRQGLE 851


>gi|126309957|ref|XP_001379424.1| PREDICTED: similar to dynein, axonemal, heavy chain 8 [Monodelphis
            domestica]
          Length = 4730

 Score = 37.6 bits (86), Expect = 0.52,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 44/97 (45%), Gaps = 24/97 (24%)

Query: 35   HKSLPNSKQAVEALFYTSRVWVVFIQDLVS--EDNHLPQEVKLNLISIG------LWVLK 86
             +S   + +  EA+ Y         +D++S    N++P EVK  L+ +G      +++ +
Sbjct: 4447 KESGGGAGETREAIVY------RLAEDMLSKLPPNYIPHEVKARLVKMGHLNSMNIFLRQ 4500

Query: 87   ECERIRR---NKSNSYQDI-------IDVISIVRDGL 113
            E +R+++      +S  D+       I +   +RD L
Sbjct: 4501 EIDRMQKVITRLRSSLSDLKLAIEGTIIMSENLRDAL 4537


>gi|295238825|gb|ADF84207.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 857

 Score = 37.6 bits (86), Expect = 0.56,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLIS----IGLWVL 85
           LL  A       ++  EAL Y    W + +        +  QE+K + +S    I + V 
Sbjct: 776 LLIAARIVELLGRRGWEALKY---WWNLLL--------YWXQELKNSAVSLFNAIAIAVA 824

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +R+      + + I ++   +R GL+
Sbjct: 825 EGTDRVIEGVQRACRAICNIPRRIRQGLE 853


>gi|50556310|ref|XP_505563.1| YALI0F18106p [Yarrowia lipolytica]
 gi|49651433|emb|CAG78372.1| YALI0F18106p [Yarrowia lipolytica]
          Length = 696

 Score = 37.6 bits (86), Expect = 0.57,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 2/73 (2%)

Query: 10  QESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHL 69
           Q+S  E  +RE   + ++  LL          K+++E  F     W   I+D  +     
Sbjct: 229 QDSLSEKEERERQAVLQAGELLQ-EDFRQLRQKESLENPFIDWDFWSRVIEDYATVAKEH 287

Query: 70  PQEVKLNLISIGL 82
           P+++K   IS G 
Sbjct: 288 PKQLKEA-ISAGF 299


>gi|226914996|gb|ACO90840.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 870

 Score = 37.6 bits (86), Expect = 0.58,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL +A       ++  EAL Y    W +          +  QE++ + IS+     + V 
Sbjct: 789 LLIVARIVELLGRRGWEALKY---WWNLL--------QYWGQEIRNSAISLFNATAITVA 837

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI      +Y+ II +   +R GL+
Sbjct: 838 EGTDRILEVLQRAYRAIIHIPRRIRQGLE 866


>gi|298205609|gb|ADI62028.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 851

 Score = 37.6 bits (86), Expect = 0.62,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 38/88 (43%), Gaps = 15/88 (17%)

Query: 31  LSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVLK 86
           L  A       ++  EA+ Y   +W +          +  QE+K + IS+     + V +
Sbjct: 771 LIAARTVEILGRRGWEAIKY---LWNLL--------QYWIQELKSSAISLFDTTAIAVAE 819

Query: 87  ECERIRRNKSNSYQDIIDVISIVRDGLK 114
             +RI       ++ I+++ + +R GL+
Sbjct: 820 GTDRIIEIIQRGFRAILNIPTRIRQGLE 847


>gi|45357380|gb|AAS58770.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 844

 Score = 37.6 bits (86), Expect = 0.65,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLIS----IGLWVL 85
           LL +A       ++  EAL Y   +W +          +  QE+K + +S    I + V 
Sbjct: 763 LLIVARIVELLGRRGWEALKY---LWNLL--------QYWSQELKKSAVSLFNAIAIAVA 811

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI      +Y+ I+ +   +R GL+
Sbjct: 812 EGTDRIIEVIQRAYRAILHIPRRIRQGLE 840


>gi|61381178|gb|AAX45241.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 845

 Score = 37.6 bits (86), Expect = 0.65,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL +A       ++  EAL Y   +W +          +  QE+K + IS+     + V 
Sbjct: 764 LLIVARTLELLGRRGWEALKY---LWNLL--------QYWIQELKNSAISLLNATAIAVA 812

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +R+      +Y+ I+++ + +R GL+
Sbjct: 813 EGTDRVIEIVQRAYRAILNIPTRIRQGLE 841


>gi|157782976|gb|ABV72402.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 848

 Score = 37.6 bits (86), Expect = 0.67,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 39/89 (43%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL +A       ++  EAL Y   +W +          +  QE+K + IS+     + V 
Sbjct: 767 LLIVARTVELLGRRGWEALKY---LWNLL--------QYWIQELKNSAISLLNATAIAVA 815

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI      +++  + + + +R GL+
Sbjct: 816 EGTDRIIEVAQRAFRAFLHIPTRIRQGLE 844


>gi|190181970|gb|ACE71848.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 866

 Score = 37.2 bits (85), Expect = 0.70,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 47/133 (35%), Gaps = 35/133 (26%)

Query: 6   HETIQESSIECRKREHWILD-------------------RSISLLSIAHK-SLPNSKQAV 45
            E  +E     R R   + D                   R   LL IA + +    ++  
Sbjct: 741 EEIEEEGGDRDRDRSRILADGFLAIIWVDLRSLFLFSYHRLRDLLLIATRIAGLLGRRGW 800

Query: 46  EALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVLKECERIRRNKSNSYQD 101
           EAL Y    W + +        +  QE+K + +S+     + V +  +RI        + 
Sbjct: 801 EALKY---WWNLLL--------YWSQELKNSAVSLLNATAIAVAEGTDRIIEILQTILRA 849

Query: 102 IIDVISIVRDGLK 114
           II +   +R GL+
Sbjct: 850 IIHIPRRIRQGLE 862


>gi|190181935|gb|ACE71820.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 866

 Score = 37.2 bits (85), Expect = 0.71,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 47/133 (35%), Gaps = 35/133 (26%)

Query: 6   HETIQESSIECRKREHWILD-------------------RSISLLSIAHK-SLPNSKQAV 45
            E  +E     R R   + D                   R   LL IA + +    ++  
Sbjct: 741 EEIEEEGGDRDRDRSRILADGFLAIIWVDLRSLFLFNYHRLRDLLLIATRIAGLLGRRGW 800

Query: 46  EALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVLKECERIRRNKSNSYQD 101
           EAL Y    W + +        +  QE+K + +S+     + V +  +RI        + 
Sbjct: 801 EALKY---WWNLLL--------YWSQELKNSAVSLLNATAIAVAEGTDRIIEILQTILRA 849

Query: 102 IIDVISIVRDGLK 114
           II +   +R GL+
Sbjct: 850 IIHIPRRIRQGLE 862


>gi|190180650|gb|ACE70835.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 874

 Score = 37.2 bits (85), Expect = 0.71,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLIS----IGLWVL 85
           LL +A       ++  EAL Y    W +          +  QE++ + IS    I + V 
Sbjct: 793 LLIVARIVETLGRRGWEALKY---WWNLL--------QYWSQELRNSAISLLDAIAIAVS 841

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI      +++ I+++ + +R GL+
Sbjct: 842 EGTDRIIEVVRRAFRAILNIPTRIRQGLE 870


>gi|153946606|gb|ABS53242.1| envelope glycoprotein [Human immunodeficiency virus 1]
 gi|190181930|gb|ACE71816.1| envelope glycoprotein [Human immunodeficiency virus 1]
 gi|190181950|gb|ACE71832.1| envelope glycoprotein [Human immunodeficiency virus 1]
 gi|190181955|gb|ACE71836.1| envelope glycoprotein [Human immunodeficiency virus 1]
 gi|190181965|gb|ACE71844.1| envelope glycoprotein [Human immunodeficiency virus 1]
 gi|190181975|gb|ACE71852.1| envelope glycoprotein [Human immunodeficiency virus 1]
 gi|190181980|gb|ACE71856.1| envelope glycoprotein [Human immunodeficiency virus 1]
 gi|190181985|gb|ACE71860.1| envelope glycoprotein [Human immunodeficiency virus 1]
 gi|190181990|gb|ACE71864.1| envelope glycoprotein [Human immunodeficiency virus 1]
 gi|190181995|gb|ACE71868.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 866

 Score = 37.2 bits (85), Expect = 0.72,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 47/133 (35%), Gaps = 35/133 (26%)

Query: 6   HETIQESSIECRKREHWILD-------------------RSISLLSIAHK-SLPNSKQAV 45
            E  +E     R R   + D                   R   LL IA + +    ++  
Sbjct: 741 EEIEEEGGDRDRDRSRILADGFLAIIWVDLRSLFLFSYHRLRDLLLIATRIAGLLGRRGW 800

Query: 46  EALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVLKECERIRRNKSNSYQD 101
           EAL Y    W + +        +  QE+K + +S+     + V +  +RI        + 
Sbjct: 801 EALKY---WWNLLL--------YWSQELKNSAVSLLNATAIAVAEGTDRIIEILQTILRA 849

Query: 102 IIDVISIVRDGLK 114
           II +   +R GL+
Sbjct: 850 IIHIPRRIRQGLE 862


>gi|190182000|gb|ACE71872.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 866

 Score = 37.2 bits (85), Expect = 0.73,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 47/133 (35%), Gaps = 35/133 (26%)

Query: 6   HETIQESSIECRKREHWILD-------------------RSISLLSIAHK-SLPNSKQAV 45
            E  +E     R R   + D                   R   LL IA + +    ++  
Sbjct: 741 EEIEEEGGDRDRDRSRILADGFLAIIWVDLRSLFLFSYHRLRDLLLIATRIAGLLGRRGW 800

Query: 46  EALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVLKECERIRRNKSNSYQD 101
           EAL Y    W + +        +  QE+K + +S+     + V +  +RI        + 
Sbjct: 801 EALKY---WWNLLL--------YWSQELKNSAVSLLNATAIAVAEGTDRIIEILQTILRA 849

Query: 102 IIDVISIVRDGLK 114
           II +   +R GL+
Sbjct: 850 IIHIPRRIRQGLE 862


>gi|324035338|gb|ADY17400.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 870

 Score = 37.2 bits (85), Expect = 0.73,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLIS----IGLWVL 85
           LL  A       ++  EAL Y   +W +          +  QE++ + IS    I + V 
Sbjct: 789 LLIAARIVELLGRRGWEALKY---LWNLL--------QYWGQELRNSAISLLNAIAIAVA 837

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI      +   I+ + + +R GL+
Sbjct: 838 EGTDRIIEILQRTCGAILHIPTRIRQGLE 866


>gi|59710072|gb|AAW88565.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 837

 Score = 37.2 bits (85), Expect = 0.74,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL +A       ++  EAL Y   +W +          +  QE+K + IS+     + V 
Sbjct: 756 LLIVARTLELLGRRGWEALKY---LWSLL--------QYWIQELKNSAISLLNATAIAVA 804

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +R+      +Y+ I+++ + +R GL+
Sbjct: 805 EGTDRVIEIVQRAYRAILNIPTRIRQGLE 833


>gi|298205613|gb|ADI62031.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 855

 Score = 37.2 bits (85), Expect = 0.75,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 38/88 (43%), Gaps = 15/88 (17%)

Query: 31  LSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVLK 86
           L  A       ++  EA+ Y   +W +          +  QE+K + IS+     + + +
Sbjct: 775 LIAARTVEILGRRGWEAIKY---LWNLL--------QYWIQELKSSAISLFDTTAIAIAE 823

Query: 87  ECERIRRNKSNSYQDIIDVISIVRDGLK 114
             +RI       ++ I+++ + +R GL+
Sbjct: 824 GTDRIIEIIQRGFRAILNIPTRIRQGLE 851


>gi|238734209|gb|ACR55442.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 868

 Score = 37.2 bits (85), Expect = 0.83,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLIS----IGLWVL 85
           LL +A       ++  EAL Y    W + +        +  QE+K + +S    I + V 
Sbjct: 787 LLIVARIVELLGRRGWEALRY---WWNLLL--------YWSQELKNSAVSLYNAIAIAVA 835

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI      S++ I+ + + +R GL+
Sbjct: 836 EGTDRIIEIVQRSFRAILHIPTRIRQGLE 864


>gi|90993890|gb|ABE03508.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 846

 Score = 37.2 bits (85), Expect = 0.86,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLIS----IGLWVL 85
           LL  A       ++  EAL Y    W +          +  QE+K + +S    I + V 
Sbjct: 765 LLIAARIVEILGRRGWEALKY---WWNLL--------QYWSQELKNSAVSLLNAIAIAVA 813

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI      +++ I+ + + +R GL+
Sbjct: 814 EGTDRILEILQRAFRAILHIPTRIRQGLE 842


>gi|326370908|gb|ADZ56656.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 850

 Score = 37.2 bits (85), Expect = 0.87,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 37/89 (41%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  E L Y   +W +          +  QE+K + +S+     + V 
Sbjct: 769 LLIAARLVELLGRRGWEXLKY---LWNLL--------QYWSQELKNSAVSLLNTTAVAVA 817

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +R+      +++ +I +   +R GL+
Sbjct: 818 EGTDRVIEAVQRAFRALIHIPRRIRQGLE 846


>gi|157782974|gb|ABV72401.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 850

 Score = 37.2 bits (85), Expect = 0.88,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 15/87 (17%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL +A       ++  EAL Y   +W +          +  QE+K + IS+     + V 
Sbjct: 769 LLIVARTVELLGRRGWEALKY---LWNLL--------QYWIQELKNSAISLLNATAIAVA 817

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDG 112
           +  +RI      +Y+ I+++   +R G
Sbjct: 818 EGTDRIIEVAQRAYRAILNIPRRIRQG 844


>gi|90993907|gb|ABE03516.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 853

 Score = 36.8 bits (84), Expect = 0.92,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLIS----IGLWVL 85
           LL  A       ++  EAL Y    W +          +  QE+K + +S    I + V 
Sbjct: 772 LLIAARIVEILGRRGWEALKY---WWNLL--------QYWSQELKNSAVSLLNAIAIAVA 820

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI      +++ I+ + + +R GL+
Sbjct: 821 EGTDRILEILQRAFRAILHIPTRIRQGLE 849


>gi|325636076|gb|ADZ33849.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 861

 Score = 36.8 bits (84), Expect = 0.93,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y    W +          +  QE+K + +S+     + V 
Sbjct: 780 LLIAARIVELLGRRGWEALKY---WWNLL--------QYWSQELKNSAVSLLNTTAIVVA 828

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI      +++ II + + +R GL+
Sbjct: 829 EGTDRIVEVVQRAFRAIIHIPTRIRQGLE 857


>gi|325636005|gb|ADZ33787.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 861

 Score = 36.8 bits (84), Expect = 0.93,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y    W +          +  QE+K + +S+     + V 
Sbjct: 780 LLIAARIVELLGRRGWEALKY---WWNLL--------QYWSQELKNSAVSLLNTTAIVVA 828

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI      +++ II + + +R GL+
Sbjct: 829 EGTDRIVEVVQRAFRAIIHIPTRIRQGLE 857


>gi|325635967|gb|ADZ33754.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 861

 Score = 36.8 bits (84), Expect = 0.93,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y    W +          +  QE+K + +S+     + V 
Sbjct: 780 LLIAARIVELLGRRGWEALKY---WWNLL--------QYWSQELKNSAVSLLNTTAIVVA 828

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI      +++ II + + +R GL+
Sbjct: 829 EGTDRIVEVVQRAFRAIIHIPTRIRQGLE 857


>gi|325635836|gb|ADZ33640.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 861

 Score = 36.8 bits (84), Expect = 0.95,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y    W +          +  QE+K + +S+     + V 
Sbjct: 780 LLIAARIVELLGRRGWEALKY---WWNLL--------QYWSQELKNSAVSLLNTTAIVVA 828

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI      +++ II + + +R GL+
Sbjct: 829 EGTDRIVEVVQRAFRAIIHIPTRIRQGLE 857


>gi|325636052|gb|ADZ33828.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 861

 Score = 36.8 bits (84), Expect = 0.96,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y    W +          +  QE+K + +S+     + V 
Sbjct: 780 LLIAARIVELLGRRGWEALKY---WWNLL--------QYWSQELKNSAVSLLNTTAIVVA 828

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI      +++ II + + +R GL+
Sbjct: 829 EGTDRIVEVVQRAFRAIIHIPTRIRQGLE 857


>gi|61381163|gb|AAX45238.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 850

 Score = 36.8 bits (84), Expect = 0.99,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLIS----IGLWVL 85
           LL +A       ++  EA+ Y   +W +          +  QE+K + IS    I + V 
Sbjct: 769 LLIVARIVELLGRRGWEAIKY---LWNLL--------QYWIQELKNSAISLLNAIAIAVA 817

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +R+       Y+ I+++ + +R GL+
Sbjct: 818 EGTDRVIEIVQRVYRAILNIPTRIRQGLE 846


>gi|239787500|emb|CAX83970.1| conserved uncharacterized protein [uncultured bacterium]
          Length = 126

 Score = 36.8 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 7/94 (7%)

Query: 23  ILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGL 82
            L ++  LL  A  +  + +  V AL    ++WV         D +LP E K NL  +  
Sbjct: 24  ALVKAALLLDQAKMNRADKQAMVVALDNNLQLWVAIRTIARQPDYNLPDEAKENLAQLSH 83

Query: 83  WV----LKECERIRRNKSNSYQDIIDVISIVRDG 112
           +V     K    I      +   ++++   + +G
Sbjct: 84  FVSDLTFKHGLTIT---DAALDALVNINLRLAEG 114


>gi|170279728|gb|ACB11844.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 345

 Score = 36.8 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y   +W +          +  QE++ + IS+     + V 
Sbjct: 264 LLIAARIVELLGRRGWEALKY---LWNLL--------QYWSQELRNSAISLLNTTAIAVA 312

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI       ++ I ++   +R GL+
Sbjct: 313 EGTDRIIEVLQRIFRAICNIPRRIRQGLE 341


>gi|187758040|gb|ACD32473.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 865

 Score = 36.8 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLIS----IGLWVL 85
           LL +A       ++  EAL Y    W +          +  QE+K + IS    I + V 
Sbjct: 784 LLIVARTVELLGRRGWEALKY---WWNLL--------QYWSQELKNSAISLLNAIAIAVA 832

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI       ++ I+ + + +R GL+
Sbjct: 833 EGTDRIIEVLQRVFRAILHIPTRIRQGLE 861


>gi|307728681|ref|YP_003905905.1| glycoside hydrolase 15-related protein [Burkholderia sp. CCGE1003]
 gi|307583216|gb|ADN56614.1| glycoside hydrolase 15-related protein [Burkholderia sp. CCGE1003]
          Length = 591

 Score = 36.8 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 25/68 (36%)

Query: 32  SIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERI 91
             AH + P       AL  T R W  +I          PQ V+ +L+++   + +    I
Sbjct: 180 KRAHHAAPQPLDVQHALDETQRFWRNWIDSFDDSRTAWPQAVRRSLLTLKALMHRRTGAI 239

Query: 92  RRNKSNSY 99
               + S 
Sbjct: 240 VAAPTTSL 247


>gi|187760554|gb|ACD34460.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 853

 Score = 36.8 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 7/85 (8%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECE 89
           LL  A       ++  EA+ Y   + + +IQ+L +    L       L +I + V +  +
Sbjct: 772 LLIAARSVETLGRRVWEAIKYWWNLLLYWIQELRNSAVGL-------LDTIAIAVAEGTD 824

Query: 90  RIRRNKSNSYQDIIDVISIVRDGLK 114
           RI  +    ++ I+ + + +R GL+
Sbjct: 825 RIIESVRRIFRAILHIPTRIRQGLE 849


>gi|187758052|gb|ACD32481.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 865

 Score = 36.8 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLIS----IGLWVL 85
           LL +A       ++  EAL Y    W +          +  QE+K + IS    I + V 
Sbjct: 784 LLIVARTVELLGRRGWEALKY---WWNLL--------QYWSQELKNSAISLLNAIAIAVA 832

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI       ++ I+ + + +R GL+
Sbjct: 833 EGTDRIIEVLQRVFRAILHIPTRIRQGLE 861


>gi|187758043|gb|ACD32475.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 860

 Score = 36.8 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLIS----IGLWVL 85
           LL +A       ++  EAL Y    W +          +  QE+K + IS    I + V 
Sbjct: 779 LLIVARTVELLGRRGWEALKY---WWNLL--------QYWSQELKNSAISLLNAIAIAVA 827

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI       ++ I+ + + +R GL+
Sbjct: 828 EGTDRIIEVLQRVFRAILHIPTRIRQGLE 856


>gi|263200970|gb|ACY70072.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 847

 Score = 36.8 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 39/100 (39%), Gaps = 21/100 (21%)

Query: 19  REHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLI 78
           R   +L   I             ++  EAL Y   +W +          +  QE+K + +
Sbjct: 761 RLRDLLSIVI------RTVELLGRRGWEALKY---LWNIL--------QYWSQELKNSAV 803

Query: 79  SI----GLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           S+     + V +  +R+       ++ II + + +R GL+
Sbjct: 804 SLLNTVAIVVAEGTDRVIEALQRIFRAIIHIPTRIRQGLE 843


>gi|187760510|gb|ACD34425.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 853

 Score = 36.4 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 7/85 (8%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECE 89
           LL  A       ++  EA+ Y   + + +IQ+L +    L       L +I + V +  +
Sbjct: 772 LLIAARSVETLGRRVWEAIKYWWNLLLYWIQELRNSAVGL-------LDTIAIAVAEGTD 824

Query: 90  RIRRNKSNSYQDIIDVISIVRDGLK 114
           RI  +    ++ I+ + + +R GL+
Sbjct: 825 RIIESVRRIFRAILHIPTRIRQGLE 849


>gi|187760487|gb|ACD34407.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 853

 Score = 36.4 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLN----LISIGLWVL 85
           LL  A       ++  EA+ Y    W +          +  QE++ +    L +I + V 
Sbjct: 772 LLIAARTVGTLGRRVWEAIKY---WWNLL--------QYWSQELRNSAVGLLDTIAIAVA 820

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI  +    ++ I+ + + +R GL+
Sbjct: 821 EGTDRIIESVRRIFRAILHIPTRIRQGLE 849


>gi|298199679|gb|ADI59774.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 856

 Score = 36.4 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 38/88 (43%), Gaps = 15/88 (17%)

Query: 31  LSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVLK 86
           L  A       ++  EA+ Y   +W +          +  QE+K +++S+     + V +
Sbjct: 776 LIAARIVELLGRRGWEAIKY---LWNIL--------QYWIQELKNSVVSLFNATAIXVAE 824

Query: 87  ECERIRRNKSNSYQDIIDVISIVRDGLK 114
             +RI      +++ I ++   +R GL+
Sbjct: 825 GTDRIIEAIQAAFRAIXNIPRRIRQGLE 852


>gi|237736120|ref|ZP_04566601.1| sodium:dicarboxylate symporter [Fusobacterium mortiferum ATCC 9817]
 gi|229421831|gb|EEO36878.1| sodium:dicarboxylate symporter [Fusobacterium mortiferum ATCC 9817]
          Length = 415

 Score = 36.4 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 35/87 (40%), Gaps = 8/87 (9%)

Query: 28  ISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKE 87
           + L+  A +      + +  +        + +  + +  N L   +K N I I  W +  
Sbjct: 103 VELILKATEGSIAPPENIYGVLK-----GLLMNLVDNPMNAL---LKGNYIGILFWSILF 154

Query: 88  CERIRRNKSNSYQDIIDVISIVRDGLK 114
              +R  K ++ Q +ID+  ++   +K
Sbjct: 155 GGFLRDGKESTKQALIDISEVILKTVK 181


>gi|226914906|gb|ACO90771.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 726

 Score = 36.4 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL +A       ++  EAL Y    W +          +  QE++ + +S+     + V 
Sbjct: 645 LLIVARTVEILGRRGWEALKY---WWNLL--------QYWSQELRSSAVSLLNATAVAVA 693

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI       ++ II +   VR GL+
Sbjct: 694 EGTDRIIEVVQRGFRAIIHIPRRVRQGLE 722


>gi|269986102|gb|ACZ57355.1| envelope glycoprotein [Human immunodeficiency virus 1]
 gi|291603755|gb|ADE20148.1| envelope glycoprotein [Human immunodeficiency virus 1]
 gi|291603765|gb|ADE20157.1| envelope glycoprotein [Human immunodeficiency virus 1]
 gi|291603775|gb|ADE20166.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 849

 Score = 36.4 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL +A       ++  EAL Y    W +          +  QE+K + IS+     + V 
Sbjct: 768 LLIVARIVELLGRRGWEALRY---WWNIL--------QYWIQELKNSAISLLNTTAIAVA 816

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI      +Y+ II +   VR GL+
Sbjct: 817 EGTDRIIEVAQRAYRAIIHIPRRVRQGLE 845


>gi|295238842|gb|ADF84215.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 864

 Score = 36.4 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLIS----IGLWVL 85
           LL  A       ++  EAL Y    W +          +  QE+K + IS    I + V 
Sbjct: 783 LLIAARIVELLGRRGWEALKY---WWNLL--------QYWSQELKKSAISLFDTIAIAVA 831

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI      +++ I+ +   +R GL+
Sbjct: 832 EGTDRIIEXARRAFRAILHIPRRIRQGLE 860


>gi|90993905|gb|ABE03515.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 853

 Score = 36.4 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 15/88 (17%)

Query: 31  LSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLIS----IGLWVLK 86
           L  A       ++  EAL Y    W +          +  QE+K + IS    I + V +
Sbjct: 773 LVAARIVEILGRRGWEALKY---WWNLL--------QYWSQELKNSAISLFNAIAIAVAE 821

Query: 87  ECERIRRNKSNSYQDIIDVISIVRDGLK 114
             +RI      +++ I+ + + +R GL+
Sbjct: 822 GTDRILEILQRAFRAILHIPTRIRQGLE 849


>gi|2853998|gb|AAC02524.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 852

 Score = 36.4 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 39/89 (43%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL +        ++  EAL Y   +W +          +  QE+K + +S+     + V 
Sbjct: 771 LLIVTRIVELLGRRGWEALKY---LWNLL--------QYWSQELKNSAVSLLNATAIAVA 819

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +R+      +++ II + + +R GL+
Sbjct: 820 EGTDRVIEVIQRTFRAIIHIPTRIRQGLE 848


>gi|325656990|gb|ADZ38988.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 851

 Score = 36.4 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 21/92 (22%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRV---WVVFIQDLVSEDNHLPQEVKLNLISI----GL 82
           LL +A       +++ EAL Y   +   W               QE+K + IS+     +
Sbjct: 770 LLIVARVVELLGRRSWEALKYWRNLLQYWG--------------QELKNSAISLLNATAI 815

Query: 83  WVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
            V +  +RI       Y+ II + + +R GL+
Sbjct: 816 AVAEGTDRIIEIVIRVYRAIIHIPTRIRQGLE 847


>gi|187760870|gb|ACD34711.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 865

 Score = 36.4 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y    W +          +  QE+K + IS+     + V 
Sbjct: 784 LLIAARIVGTLGRRVWEALKY---WWNLL--------QYWSQELKNSAISLLNATAIAVA 832

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI       ++ I+ +   +R GL+
Sbjct: 833 EGTDRIIEIVQRGFRAILHIPVRIRQGLE 861


>gi|187760822|gb|ACD34673.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 865

 Score = 36.4 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y    W +          +  QE+K + IS+     + V 
Sbjct: 784 LLIAARIVGTLGRRVWEALKY---WWNLL--------QYWSQELKNSAISLLNATAIAVA 832

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI       ++ I+ +   +R GL+
Sbjct: 833 EGTDRIIEIVQRGFRAILHIPVRIRQGLE 861


>gi|187760788|gb|ACD34646.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 865

 Score = 36.4 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y    W +          +  QE+K + IS+     + V 
Sbjct: 784 LLIAARIVGTLGRRVWEALKY---WWNLL--------QYWSQELKNSAISLLNATAIAVA 832

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI       ++ I+ +   +R GL+
Sbjct: 833 EGTDRIIEIVQRGFRAILHIPVRIRQGLE 861


>gi|326370848|gb|ADZ56604.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 848

 Score = 36.4 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL +A       ++  EAL Y    W   +Q       +  QE+K + +S+     + V 
Sbjct: 767 LLIVARTVELLGRRGWEALKY----WGNLLQ-------YWNQELKNSAVSLLNATAIAVA 815

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI       ++ I ++   +R GL+
Sbjct: 816 EGTDRIIEIARGIFRAICNIPRRIRQGLE 844


>gi|157005060|gb|ABV00763.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 861

 Score = 36.4 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLIS----IGLWVL 85
           LL  A       ++  EAL Y    W +          +  QE+K + +S    I + V 
Sbjct: 780 LLIAARTVELLGRRGWEALKY---WWNLL--------QYWIQELKTSAVSLFNAIAIAVA 828

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI       ++ I+ + + +R GL+
Sbjct: 829 EGTDRILEVLQRIFRAILHIPTRIRQGLE 857


>gi|90993894|gb|ABE03510.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 854

 Score = 36.1 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 15/88 (17%)

Query: 31  LSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLIS----IGLWVLK 86
           L  A       ++  EAL Y    W +          +  QE+K + IS    I + V +
Sbjct: 774 LVAARIVEILGRRGWEALKY---WWNLL--------QYWSQELKNSAISLLNAIAIAVAE 822

Query: 87  ECERIRRNKSNSYQDIIDVISIVRDGLK 114
             +RI      +++ I+ + + +R GL+
Sbjct: 823 GTDRILEILQRAFRAILHIPTRIRQGLE 850


>gi|324035332|gb|ADY17397.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 867

 Score = 36.1 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y   +W +          +  QE++ + IS+     + V 
Sbjct: 786 LLIAARIVELLGRRGWEALKY---LWNLL--------QYWGQELRNSAISLLNATAIAVA 834

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI      + + I+ + + +R GL+
Sbjct: 835 EGTDRIIEILQRTCRAILRIPTRIRQGLE 863


>gi|324035320|gb|ADY17391.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 869

 Score = 36.1 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y   +W +          +  QE++ + IS+     + V 
Sbjct: 788 LLIAARIVELLGRRGWEALKY---LWNLL--------QYWGQELRNSAISLLNATAIAVA 836

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI      + + I+ + + +R GL+
Sbjct: 837 EGTDRIIEILQRTCRAILRIPTRIRQGLE 865


>gi|170279726|gb|ACB11843.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 345

 Score = 36.1 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y   +W +          +  QE++ + IS+     + V 
Sbjct: 264 LLIAARIVELLGRRGWEALKY---LWNLL--------QYWSQELRNSAISLLNTTAIAVA 312

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI       ++ I ++   +R GL+
Sbjct: 313 EGTDRIIEVLQRIFRAICNIPRRIRQGLE 341


>gi|157783012|gb|ABV72420.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 849

 Score = 36.1 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y    W +          +  QE+K + IS+     + V 
Sbjct: 768 LLIAARIVELLGRRGWEALKY---WWNLL--------QYWIQELKNSAISLLNATAIAVA 816

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI       Y+ II++ + +R GL+
Sbjct: 817 EGTDRIIEVVQRIYRAIINIPTRIRQGLE 845


>gi|325657046|gb|ADZ39016.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 851

 Score = 36.1 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL +A       +++ EAL Y    W +          +  QE+K + IS+     + V 
Sbjct: 770 LLIVARVVELLGRRSWEALKY---WWNLL--------QYWGQELKNSAISLLNATAIAVA 818

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI       Y+ II + + +R GL+
Sbjct: 819 EGTDRIIEIVIRVYRAIIHIPTRIRQGLE 847


>gi|325657042|gb|ADZ39014.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 851

 Score = 36.1 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL +A       +++ EAL Y    W +          +  QE+K + IS+     + V 
Sbjct: 770 LLIVARVVELLGRRSWEALKY---WWNLL--------QYWGQELKNSAISLLNATAIAVA 818

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI       Y+ II + + +R GL+
Sbjct: 819 EGTDRIIEIVIRVYRAIIHIPTRIRQGLE 847


>gi|325657036|gb|ADZ39011.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 851

 Score = 36.1 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL +A       +++ EAL Y    W +          +  QE+K + IS+     + V 
Sbjct: 770 LLIVARVVELLGRRSWEALKY---WWNLL--------QYWGQELKNSAISLLNATAIAVA 818

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI       Y+ II + + +R GL+
Sbjct: 819 EGTDRIIEIVIRVYRAIIHIPTRIRQGLE 847


>gi|325656996|gb|ADZ38991.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 851

 Score = 36.1 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL +A       +++ EAL Y    W +          +  QE+K + IS+     + V 
Sbjct: 770 LLIVARVVELLGRRSWEALKY---WWNLL--------QYWGQELKNSAISLLNATAIAVA 818

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI       Y+ II + + +R GL+
Sbjct: 819 EGTDRIIEIVIRVYRAIIHIPTRIRQGLE 847


>gi|325656992|gb|ADZ38989.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 851

 Score = 36.1 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL +A       +++ EAL Y    W +          +  QE+K + IS+     + V 
Sbjct: 770 LLIVARVVELLGRRSWEALKY---WWNLL--------QYWGQELKNSAISLLNATAIAVA 818

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI       Y+ II + + +R GL+
Sbjct: 819 EGTDRIIEIVIRVYRAIIHIPTRIRQGLE 847


>gi|325657006|gb|ADZ38996.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 851

 Score = 36.1 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL +A       +++ EAL Y    W +          +  QE+K + IS+     + V 
Sbjct: 770 LLIVARVVELLGRRSWEALKY---WWNLL--------QYWGQELKNSAISLLNATAIAVA 818

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI       Y+ II + + +R GL+
Sbjct: 819 EGTDRIIEIVIRVYRAIIHIPTRIRQGLE 847


>gi|325656988|gb|ADZ38987.1| envelope glycoprotein [Human immunodeficiency virus 1]
 gi|325656998|gb|ADZ38992.1| envelope glycoprotein [Human immunodeficiency virus 1]
 gi|325657002|gb|ADZ38994.1| envelope glycoprotein [Human immunodeficiency virus 1]
 gi|325657004|gb|ADZ38995.1| envelope glycoprotein [Human immunodeficiency virus 1]
 gi|325657008|gb|ADZ38997.1| envelope glycoprotein [Human immunodeficiency virus 1]
 gi|325657010|gb|ADZ38998.1| envelope glycoprotein [Human immunodeficiency virus 1]
 gi|325657012|gb|ADZ38999.1| envelope glycoprotein [Human immunodeficiency virus 1]
 gi|325657014|gb|ADZ39000.1| envelope glycoprotein [Human immunodeficiency virus 1]
 gi|325657016|gb|ADZ39001.1| envelope glycoprotein [Human immunodeficiency virus 1]
 gi|325657018|gb|ADZ39002.1| envelope glycoprotein [Human immunodeficiency virus 1]
 gi|325657022|gb|ADZ39004.1| envelope glycoprotein [Human immunodeficiency virus 1]
 gi|325657024|gb|ADZ39005.1| envelope glycoprotein [Human immunodeficiency virus 1]
 gi|325657026|gb|ADZ39006.1| envelope glycoprotein [Human immunodeficiency virus 1]
 gi|325657030|gb|ADZ39008.1| envelope glycoprotein [Human immunodeficiency virus 1]
 gi|325657032|gb|ADZ39009.1| envelope glycoprotein [Human immunodeficiency virus 1]
 gi|325657034|gb|ADZ39010.1| envelope glycoprotein [Human immunodeficiency virus 1]
 gi|325657038|gb|ADZ39012.1| envelope glycoprotein [Human immunodeficiency virus 1]
 gi|325657040|gb|ADZ39013.1| envelope glycoprotein [Human immunodeficiency virus 1]
 gi|325657044|gb|ADZ39015.1| envelope glycoprotein [Human immunodeficiency virus 1]
 gi|325657048|gb|ADZ39017.1| envelope glycoprotein [Human immunodeficiency virus 1]
 gi|325657050|gb|ADZ39018.1| envelope glycoprotein [Human immunodeficiency virus 1]
 gi|325657052|gb|ADZ39019.1| envelope glycoprotein [Human immunodeficiency virus 1]
 gi|325657054|gb|ADZ39020.1| envelope glycoprotein [Human immunodeficiency virus 1]
 gi|325657058|gb|ADZ39022.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 851

 Score = 36.1 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL +A       +++ EAL Y    W +          +  QE+K + IS+     + V 
Sbjct: 770 LLIVARVVELLGRRSWEALKY---WWNLL--------QYWGQELKNSAISLLNATAIAVA 818

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI       Y+ II + + +R GL+
Sbjct: 819 EGTDRIIEIVIRVYRAIIHIPTRIRQGLE 847


>gi|190182879|gb|ACE72574.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 869

 Score = 36.1 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y    W   +Q       +  QE+K + IS+     + V 
Sbjct: 788 LLIAARVVELLGRRGWEALKY----WWSLLQ-------YWSQEIKNSAISLLNTTAIAVA 836

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI       ++ I  + + +R GL+
Sbjct: 837 EGTDRIIEAARRIFRAICHIPTRIRQGLE 865


>gi|190182874|gb|ACE72570.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 868

 Score = 36.1 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y    W   +Q       +  QE+K + IS+     + V 
Sbjct: 787 LLIAARVVELLGRRGWEALKY----WWSLLQ-------YWSQEIKNSAISLLNTTAIAVA 835

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI       ++ I  + + +R GL+
Sbjct: 836 EGTDRIIEAARRIFRAICHIPTRIRQGLE 864


>gi|190182869|gb|ACE72566.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 868

 Score = 36.1 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y    W   +Q       +  QE+K + IS+     + V 
Sbjct: 787 LLIAARVVELLGRRGWEALKY----WWSLLQ-------YWSQEIKNSAISLLNTTAIAVA 835

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI       ++ I  + + +R GL+
Sbjct: 836 EGTDRIIEAARRIFRAICHIPTRIRQGLE 864


>gi|190182844|gb|ACE72546.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 879

 Score = 36.1 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y    W   +Q       +  QE+K + IS+     + V 
Sbjct: 798 LLIAARVVELLGRRGWEALKY----WWSLLQ-------YWSQEIKNSAISLLNTTAIAVA 846

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI       ++ I  + + +R GL+
Sbjct: 847 EGTDRIIEAARRIFRAICHIPTRIRQGLE 875


>gi|325656994|gb|ADZ38990.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 851

 Score = 36.1 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL +A       +++ EAL Y    W +          +  QE+K + IS+     + V 
Sbjct: 770 LLIVARVVELLGRRSWEALKY---WWNLL--------QYWGQELKNSAISLLNATAIAVA 818

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI       Y+ II + + +R GL+
Sbjct: 819 EGTDRIIEIVIRVYRAIIHIPTRIRQGLE 847


>gi|187760559|gb|ACD34464.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 853

 Score = 36.1 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 38/89 (42%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLIS----IGLWVL 85
           LL  A       ++  E + Y    W +          +  QE++ +++S    I + V 
Sbjct: 772 LLIAARIVGTLGRRVWEVIKY---WWNLL--------QYWSQELRNSVVSLLDTIAIAVA 820

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI  +    ++ I+ + + +R GL+
Sbjct: 821 EGTDRIIESVRRIFRAILHIPTRIRQGLE 849


>gi|325657020|gb|ADZ39003.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 851

 Score = 36.1 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL +A       +++ EAL Y    W +          +  QE+K + IS+     + V 
Sbjct: 770 LLIVARVVELLGRRSWEALKY---WWNLL--------QYWGQELKNSAISLLNATAIAVA 818

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI       Y+ II + + +R GL+
Sbjct: 819 EGTDRIIEIVIRVYRAIIHIPTRIRQGLE 847


>gi|325657000|gb|ADZ38993.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 851

 Score = 36.1 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL +A       +++ EAL Y    W +          +  QE+K + IS+     + V 
Sbjct: 770 LLIVARVVELLGRRSWEALKY---WWNLL--------QYWGQELKNSAISLLNATAIAVA 818

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI       Y+ II + + +R GL+
Sbjct: 819 EGTDRIIEIVIRVYRAIIHIPTRIRQGLE 847


>gi|324035328|gb|ADY17395.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 871

 Score = 36.1 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y   +W +          +  QE++ + IS+     + V 
Sbjct: 790 LLIAARIVELLGRRGWEALKY---LWNLL--------QYWGQELRNSAISLLNATAIAVA 838

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI      +   I+ + + +R GL+
Sbjct: 839 EGTDRIIEILQRTCGAILHIPTRIRQGLE 867


>gi|325657028|gb|ADZ39007.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 851

 Score = 36.1 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL +A       +++ EAL Y    W +          +  QE+K + IS+     + V 
Sbjct: 770 LLIVARVVELLGRRSWEALKY---WWNLL--------QYWGQELKNSAISLLNATAIAVA 818

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI       Y+ II + + +R GL+
Sbjct: 819 EGTDRIIEIVIRVYRAIIHIPTRIRQGLE 847


>gi|190182908|gb|ACE72597.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 867

 Score = 36.1 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y    W +          +  QE+K + IS+     + V 
Sbjct: 786 LLIAARVVELLGRRGWEALKY---WWNLL--------QYWSQEIKNSTISLLNTTAIAVA 834

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI       ++ I  + + +R GL+
Sbjct: 835 EGTDRIIEAARRIFRAICHIPTRIRQGLE 863


>gi|190182893|gb|ACE72585.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 868

 Score = 36.1 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y    W +          +  QE+K + IS+     + V 
Sbjct: 787 LLIAARVVELLGRRGWEALKY---WWNLL--------QYWSQEIKNSTISLLNTTAIAVA 835

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI       ++ I  + + +R GL+
Sbjct: 836 EGTDRIIEAARRIFRAICHIPTRIRQGLE 864


>gi|190182864|gb|ACE72562.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 868

 Score = 36.1 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y    W +          +  QE+K + IS+     + V 
Sbjct: 787 LLIAARVVELLGRRGWEALKY---WWNLL--------QYWSQEIKNSTISLLNTTAIAVA 835

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI       ++ I  + + +R GL+
Sbjct: 836 EGTDRIIEAARRIFRAICHIPTRIRQGLE 864


>gi|190182859|gb|ACE72558.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 879

 Score = 36.1 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y    W +          +  QE+K + IS+     + V 
Sbjct: 798 LLIAARVVELLGRRGWEALKY---WWNLL--------QYWSQEIKNSTISLLNTTAIAVA 846

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI       ++ I  + + +R GL+
Sbjct: 847 EGTDRIIEAARRIFRAICHIPTRIRQGLE 875


>gi|190182854|gb|ACE72554.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 879

 Score = 36.1 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y    W +          +  QE+K + IS+     + V 
Sbjct: 798 LLIAARVVELLGRRGWEALKY---WWNLL--------QYWSQEIKNSTISLLNTTAIAVA 846

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI       ++ I  + + +R GL+
Sbjct: 847 EGTDRIIEAARRIFRAICHIPTRIRQGLE 875


>gi|153946469|gb|ABS53176.1| envelope glycoprotein [Human immunodeficiency virus 1]
 gi|190174856|gb|ACE66413.1| envelope glycoprotein [Human immunodeficiency virus 1]
 gi|190174861|gb|ACE66417.1| envelope glycoprotein [Human immunodeficiency virus 1]
 gi|190174866|gb|ACE66421.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 857

 Score = 36.1 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 7/85 (8%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECE 89
           LL  A       ++  EAL Y   +   +IQ+L +    L       L +I + V +  +
Sbjct: 776 LLIAARIVELLGRRGWEALKYWWNLLQYWIQELKNSAVSL-------LNAIAIAVAEGTD 828

Query: 90  RIRRNKSNSYQDIIDVISIVRDGLK 114
           RI      ++  I+ +   +R GL+
Sbjct: 829 RIIEVLQRAFGAILHIPRRIRQGLE 853


>gi|74273398|gb|ABA01387.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 852

 Score = 35.7 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL +A       ++  EAL Y    W   +Q       +  QE+K + IS+     + V 
Sbjct: 771 LLIVARIVELLGRRGWEALKY----WGNLLQ-------YWSQELKNSAISLFNATAIAVA 819

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI       ++ II +   +R GL+
Sbjct: 820 EGTDRIIEIAQIIFRAIIHIPRRIRQGLE 848


>gi|295883792|gb|ADG57029.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 865

 Score = 35.7 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL +A       ++  EAL Y    W +          +  QE+K + IS+     + V 
Sbjct: 784 LLIVARIVELLGRRGWEALKY---WWNLL--------QYWSQELKNSAISLLNATAIAVA 832

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI      +++ I+ + + +R GL+
Sbjct: 833 EGTDRIIEIGQRTFRAILHIPTRIRQGLE 861


>gi|162147450|ref|YP_001601911.1| hypothetical protein GDI_1666 [Gluconacetobacter diazotrophicus PAl
           5]
 gi|161786027|emb|CAP55609.1| hypothetical protein GDI1666 [Gluconacetobacter diazotrophicus PAl
           5]
          Length = 132

 Score = 35.7 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 46/109 (42%), Gaps = 1/109 (0%)

Query: 6   HETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSE 65
           +++I  SS+  R+ +       I  L  A  S  ++ +   AL  + R+W + +   V +
Sbjct: 10  YQSIAGSSLTGREADAACFRMLIDELKAAEASSDHTVRRH-ALARSQRLWAMIMNANVQD 68

Query: 66  DNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
               PQE +   +++         R   + +     +I +   VRDGL+
Sbjct: 69  SGLTPQEDRQLFVTLAHRSQLYGIRAMLDPALPLTPLIRIAENVRDGLE 117


>gi|157783014|gb|ABV72421.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 852

 Score = 35.7 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 7/85 (8%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECE 89
           LL +A       ++  EAL Y   +   +IQ+L +    L       L S  + V +  +
Sbjct: 771 LLIVARIVEILGRRGWEALKYWWNLLQYWIQELKNSATSL-------LNSTAIAVAEGTD 823

Query: 90  RIRRNKSNSYQDIIDVISIVRDGLK 114
           R+      +++ I+++ + +R GL+
Sbjct: 824 RVIEIAQRAFRAILNIPTRIRQGLE 848


>gi|74273408|gb|ABA01396.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 852

 Score = 35.7 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL +A       ++  EAL Y    W   +Q       +  QE+K + IS+     + V 
Sbjct: 771 LLIVARIVELLGRRGWEALKY----WGNLLQ-------YWSQELKNSAISLFNATAIAVA 819

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI       ++ II +   +R GL+
Sbjct: 820 EGTDRIIEIAQIIFRAIIHIPRRIRQGLE 848


>gi|209545559|ref|YP_002277788.1| hypothetical protein Gdia_3448 [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209533236|gb|ACI53173.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 131

 Score = 35.7 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 46/109 (42%), Gaps = 1/109 (0%)

Query: 6   HETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSE 65
           +++I  SS+  R+ +       I  L  A  S  ++ +   AL  + R+W + +   V +
Sbjct: 9   YQSIAGSSLTGREADAACFRMLIDELKAAEASSDHTVRRH-ALARSQRLWAMIMNANVQD 67

Query: 66  DNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
               PQE +   +++         R   + +     +I +   VRDGL+
Sbjct: 68  SGLTPQEDRQLFVTLAHRSQLYGIRAMLDPALPLTPLIRIAENVRDGLE 116


>gi|253999281|ref|YP_003051344.1| methyl-accepting chemotaxis sensory transducer [Methylovorus sp.
           SIP3-4]
 gi|253985960|gb|ACT50817.1| methyl-accepting chemotaxis sensory transducer [Methylovorus sp.
           SIP3-4]
          Length = 1011

 Score = 35.7 bits (81), Expect = 2.3,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 14/91 (15%)

Query: 9   IQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNH 68
           + ES++  R++   ILDR++    +  ++   +  A++A    SR          + DN 
Sbjct: 49  VDESALVGREQAQEILDRAV----VTARANARTMLAMKATHQESR---------AAVDNL 95

Query: 69  LPQEVKLNLISIGLWVLKECERIRRNKSNSY 99
           L   ++ NL  +G W L E       K   +
Sbjct: 96  LANSLRQNLDLVGAWTLWEPNAFD-GKDKDF 125


>gi|187757762|gb|ACD32268.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 863

 Score = 35.7 bits (81), Expect = 2.3,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 15/87 (17%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL +A       ++  EAL Y    W +          +  QE+K + +S+     + V 
Sbjct: 782 LLIVARTVELLGRRGWEALKY---WWNLL--------QYWSQELKNSAVSLLNATAIAVA 830

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDG 112
           +  +RI       ++ II +   +R G
Sbjct: 831 EGTDRILEILQRIFRAIIHIPRRIRQG 857


>gi|74273418|gb|ABA01405.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 852

 Score = 35.7 bits (81), Expect = 2.3,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL +A       ++  EAL Y    W   +Q       +  QE+K + IS+     + V 
Sbjct: 771 LLIVARIVELLGRRGWEALKY----WGNLLQ-------YWSQELKNSAISLFNATAIAVA 819

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI       ++ II +   +R GL+
Sbjct: 820 EGTDRIIEIAQLIFRAIIHIPRRIRQGLE 848


>gi|295238793|gb|ADF84191.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 857

 Score = 35.7 bits (81), Expect = 2.4,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLIS----IGLWVL 85
           LL  A       ++  EAL Y    W   +Q       +  QE+K + IS    I + V 
Sbjct: 776 LLIAARIVGLLGRRGWEALKY----WWSLLQ-------YWSQELKNSAISLLNAIAIAVA 824

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI      + + I+ + + +R GL+
Sbjct: 825 EGTDRIIEXLQRAGRAILHIPTRIRQGLE 853


>gi|312434202|gb|ADQ74858.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 846

 Score = 35.7 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL +A       ++  EAL Y    W +          +  QE+K + +S+     + V 
Sbjct: 765 LLIVARIVELLGRRGWEALKY---WWNLL--------QYWSQELKNSAVSLLNATAIAVA 813

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI       ++ II + + +R GL+
Sbjct: 814 EGTDRIIEVLQRIFRAIIHIPTRIRQGLE 842


>gi|190182903|gb|ACE72593.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 868

 Score = 35.3 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL +A       ++  EAL Y    W +          +  QE+K + IS+     + V 
Sbjct: 787 LLIVARVVELLGRRGWEALKY---WWNLL--------QYWSQEIKNSAISLLNTTAIAVA 835

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI       ++ I  + + +R GL+
Sbjct: 836 EGTDRIIEAARRIFRAICHIPTRIRQGLE 864


>gi|190182898|gb|ACE72589.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 868

 Score = 35.3 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL +A       ++  EAL Y    W +          +  QE+K + IS+     + V 
Sbjct: 787 LLIVARVVELLGRRGWEALKY---WWNLL--------QYWSQEIKNSAISLLNTTAIAVA 835

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI       ++ I  + + +R GL+
Sbjct: 836 EGTDRIIEAARRIFRAICHIPTRIRQGLE 864


>gi|153946622|gb|ABS53250.1| envelope glycoprotein [Human immunodeficiency virus 1]
 gi|190182839|gb|ACE72542.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 868

 Score = 35.3 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL +A       ++  EAL Y    W +          +  QE+K + IS+     + V 
Sbjct: 787 LLIVARVVELLGRRGWEALKY---WWNLL--------QYWSQEIKNSAISLLNTTAIAVA 835

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI       ++ I  + + +R GL+
Sbjct: 836 EGTDRIIEAARRIFRAICHIPTRIRQGLE 864


>gi|297194175|ref|ZP_06911573.1| DNA-cytosine methyltransferase [Streptomyces pristinaespiralis
          ATCC 25486]
 gi|297152146|gb|EFH31551.1| DNA-cytosine methyltransferase [Streptomyces pristinaespiralis
          ATCC 25486]
          Length = 328

 Score = 35.3 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 3/58 (5%)

Query: 42 KQAVEALFYTSRVWVVFIQDLVS--EDNHLPQEVKLNLISIGLWVLKECERIRRNKSN 97
          +QA E L      W V  +DLV    D+H P+ + ++L+S GL  +K    +RR  S 
Sbjct: 36 RQACETLLANRPHWNVVCEDLVDFLPDDH-PETLDVDLLSAGLPRVKASAAVRRTDSE 92


>gi|219127423|ref|XP_002183935.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217404658|gb|EEC44604.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 521

 Score = 35.3 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 7/79 (8%)

Query: 2  RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSL------PNSKQAVEALFYTSRVW 55
          ++Y+ E   +++      E   L  +I  L +           P SK+ +EA    SRV 
Sbjct: 11 QEYFDEVCLDNAGIFELNEVDALQETIDQLRVQGSLDHLSLTFPTSKEGLEARDERSRV- 69

Query: 56 VVFIQDLVSEDNHLPQEVK 74
          +  I+DL    NHL + ++
Sbjct: 70 LTLIEDLNVSRNHLDKALR 88


>gi|190182884|gb|ACE72578.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 868

 Score = 35.3 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y    W +          +  QE+K + IS+     + V 
Sbjct: 787 LLIAARVVELLGRRGWEALKY---WWNLL--------QYWSQEIKNSTISLLNTTAIAVA 835

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI       ++ I  + + +R GL+
Sbjct: 836 EGTDRIIEVARRIFRAICHIPTRIRQGLE 864


>gi|187760534|gb|ACD34444.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 853

 Score = 35.3 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 7/85 (8%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECE 89
           LL  A       ++  EA+ Y   + + +IQ+L +    L       L +I + V +  +
Sbjct: 772 LLIAARIVETLGRRVWEAIKYWWNLLLYWIQELRNSAVGL-------LDTIAIAVAEGTD 824

Query: 90  RIRRNKSNSYQDIIDVISIVRDGLK 114
           RI  +    ++ I+ + + +R GL+
Sbjct: 825 RIIESVRRIFRAILHIPTRIRQGLE 849


>gi|187760505|gb|ACD34421.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 853

 Score = 35.3 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 7/85 (8%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECE 89
           LL  A       ++  EA+ Y   +   +IQ+L +    L       L +I + V +  +
Sbjct: 772 LLIAARIVETLGRRVWEAIKYWWNLLQYWIQELRNSAVGL-------LDTIAIAVAEGTD 824

Query: 90  RIRRNKSNSYQDIIDVISIVRDGLK 114
           RI  +    ++ I+ + + +R GL+
Sbjct: 825 RIIESVRRIFRAILHIPTRIRQGLE 849


>gi|187760539|gb|ACD34448.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 853

 Score = 35.3 bits (80), Expect = 3.0,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 7/85 (8%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECE 89
           LL  A       ++  EA+ Y   +   +IQ+L +    L       L +I + V +  +
Sbjct: 772 LLIAARIVETLGRRVWEAIKYWWNLLQYWIQELRNSAVGL-------LDTIAIAVAEGTD 824

Query: 90  RIRRNKSNSYQDIIDVISIVRDGLK 114
           RI  +    ++ I+ + + +R GL+
Sbjct: 825 RIIESVRRIFRAILHIPTRIRQGLE 849


>gi|295239044|gb|ADF84314.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 867

 Score = 35.3 bits (80), Expect = 3.0,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 39/89 (43%), Gaps = 15/89 (16%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL +A       ++  E L Y    W +          +  QE+K + +S+     + V 
Sbjct: 786 LLIVARTVELLGRRGWETLKY---WWNLL--------QYWSQELKNSAVSLLNATAIAVG 834

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +  +RI      +++ II++ + +R GL+
Sbjct: 835 EGTDRIIEVAQRTFRAIINIPTRIRQGLE 863


>gi|77164777|ref|YP_343302.1| hybrid signal transduction histidine kinase and diguanylate
            cyclase/phosphodiesterase [Nitrosococcus oceani ATCC
            19707]
 gi|76883091|gb|ABA57772.1| response regulator receiver modulated diguanylate
            cyclase/phosphodiesterase [Nitrosococcus oceani ATCC
            19707]
          Length = 1499

 Score = 34.9 bits (79), Expect = 3.6,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 46/116 (39%), Gaps = 8/116 (6%)

Query: 2    RQYYHETIQESSIECRKRE---HWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVF 58
             Q+Y + ++ ++++    E      L+++   L    +    + +   A   T   W   
Sbjct: 1211 YQFYEKGMETAAVKRLGLEAELRRALEQNELALYYQPQINLGTGEI--ATLETLIRWHHP 1268

Query: 59   IQDLVSEDNHLPQEVKLNLI-SIGLWVLKE-CERIRRNKSNSYQDI-IDVISIVRD 111
               L+     +P   +  LI SIG W+L+E C +++      +    I V    R+
Sbjct: 1269 EHGLIPPSEFIPLAEETGLIASIGAWILREACTQMQSWLQRGFGPFHIAVNVSGRE 1324


>gi|260776227|ref|ZP_05885122.1| putative virulence-mediating protein VirC [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260607450|gb|EEX33715.1| putative virulence-mediating protein VirC [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 634

 Score = 34.9 bits (79), Expect = 3.9,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 50/118 (42%), Gaps = 18/118 (15%)

Query: 4   YYHETIQESSIECR-KREHWILDRSISLLSIA---HKSLPNSKQAVEALFYT-------- 51
           +Y +T  +  +  +   E  +  R I LL       ++   S++  E LF T        
Sbjct: 391 FYRQTYDDEILSEKNALERQLNKREIELLEAQNELQQTKLRSQRTREILFITLFFALAYL 450

Query: 52  --SRVWVV--FIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDV 105
              R+W +    ++L S++   P     N   I  W L + + ++++KS +   +ID+
Sbjct: 451 VIRRLWKMKRITKELESQNTTDPLTGLANRRYIENW-LSQSDNVQQHKSYAL-SVIDI 506


>gi|148546196|ref|YP_001266298.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida F1]
 gi|148510254|gb|ABQ77114.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida F1]
          Length = 694

 Score = 34.5 bits (78), Expect = 5.0,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 41/108 (37%), Gaps = 11/108 (10%)

Query: 2   RQYYHETIQESSIECRKRE---HWILDRSISLLSIAHKSLPNSKQ--AVEALFYTSRVWV 56
            Q+Y  ++       R+ E      L R+   L    +      +   VEAL      W 
Sbjct: 419 YQFYIASVDSEMRRRRELEKDLREALPRNQLYLVYQPQISYRDHRVVGVEALLR----WQ 474

Query: 57  VFIQDLVSEDNHLPQ-EVKLNLISIGLWVLKECER-IRRNKSNSYQDI 102
                +V  D  +P  E   ++ISIG WVL +  R +R      + D+
Sbjct: 475 HPELGMVPPDQFIPLAEQNGSIISIGEWVLDQACRQLREWHDQGFSDL 522


>gi|26987650|ref|NP_743075.1| GGDEF domain-containing protein [Pseudomonas putida KT2440]
 gi|24982332|gb|AAN66539.1|AE016282_7 GGDEF domain protein [Pseudomonas putida KT2440]
          Length = 693

 Score = 34.5 bits (78), Expect = 5.3,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 11/108 (10%)

Query: 2   RQYYHETIQESSIECRKRE---HWILDRSISLLSIAHKSLPNSKQ--AVEALFYTSRVWV 56
            Q+Y  ++       R+ E      L R+   L    +      +   VEAL      W 
Sbjct: 418 YQFYIASVDSEMRRRRELEKDLREALPRNQLYLVYQPQISYRDHRVVGVEALLR----WQ 473

Query: 57  VFIQDLVSEDNHLPQ-EVKLNLISIGLWVLKE-CERIRRNKSNSYQDI 102
                +V  D  +P  E   ++ISIG WVL + C ++R      + D+
Sbjct: 474 HPELGMVPPDQFIPLAEQNGSIISIGEWVLDQACRQLREWHDQGFSDL 521


>gi|167035467|ref|YP_001670698.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida GB-1]
 gi|166861955|gb|ABZ00363.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida GB-1]
          Length = 683

 Score = 34.5 bits (78), Expect = 5.4,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 11/108 (10%)

Query: 2   RQYYHETIQESSIECRKRE---HWILDRSISLLSIAHKSLPNSKQ--AVEALFYTSRVWV 56
            Q+Y  ++       R+ E      L R+   L    +      +   VEAL      W 
Sbjct: 408 YQFYIASVDSEMRRRRELEKDLREALPRNQLYLVYQPQISYRDHRVVGVEALLR----WQ 463

Query: 57  VFIQDLVSEDNHLPQ-EVKLNLISIGLWVLKE-CERIRRNKSNSYQDI 102
                +V  D  +P  E   ++ISIG WVL + C ++R      + D+
Sbjct: 464 HPELGMVPPDQFIPLAEQNGSIISIGEWVLDQACRQLREWHDQGFSDL 511


>gi|46200769|ref|ZP_00056465.2| hypothetical protein Magn03011167 [Magnetospirillum magnetotacticum
           MS-1]
          Length = 114

 Score = 34.5 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 42/101 (41%), Gaps = 8/101 (7%)

Query: 17  RKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLN 76
           +  E        + +++       ++ A  AL +  ++WV     +   ++ LP  VK N
Sbjct: 11  KIGEQDAFGLVEAAITLDQSRGDKARLAA-ALDHNLQLWVAIRTLVTDTNSGLPDAVKTN 69

Query: 77  LISIGLWV----LKECERIRRNKSNSYQDIIDVISIVRDGL 113
           L  +  +V    LK+   I     N+   +++V   + +GL
Sbjct: 70  LTRLSDFVADTTLKKGVDI---SDNTITTLVNVNLQISEGL 107


>gi|313497283|gb|ADR58649.1| Diguanylate cyclase/phosphodiesterase [Pseudomonas putida BIRD-1]
          Length = 683

 Score = 34.1 bits (77), Expect = 5.8,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 11/108 (10%)

Query: 2   RQYYHETIQESSIECRKRE---HWILDRSISLLSIAHKSLPNSKQ--AVEALFYTSRVWV 56
            Q+Y  ++       R+ E      L R+   L    +      +   VEAL      W 
Sbjct: 408 YQFYIASVDSEMRRRRELEKDLREALPRNQLYLVYQPQISYRDHRVVGVEALLR----WQ 463

Query: 57  VFIQDLVSEDNHLPQ-EVKLNLISIGLWVLKE-CERIRRNKSNSYQDI 102
                +V  D  +P  E   ++ISIG WVL + C ++R      + D+
Sbjct: 464 HPELGMVPPDQFIPLAEQNGSIISIGEWVLDQACRQLREWHDQGFSDL 511


>gi|90420690|ref|ZP_01228596.1| putative sensory box/response regulator [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90334981|gb|EAS48742.1| putative sensory box/response regulator [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 766

 Score = 34.1 bits (77), Expect = 5.9,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 47/132 (35%), Gaps = 26/132 (19%)

Query: 2   RQYYHETIQESSIECRKR--------EHWILDRSISLLSIAHKSLPNSKQAVEALFYTSR 53
            ++Y   + E   ECR          E          L  A  +   + +  E L     
Sbjct: 493 FRFYEAQMDEQIEECRALTGELRGALERREFILHFQPLVSARAA---TIEGFEVLLR--- 546

Query: 54  VWVVFIQDLVSEDNHLPQ-EVKLNLISIGLWVLKECERIRRNKSNSYQDII--------- 103
            W    + LV  D  +P  E    +I +G WV++E  RI     +     +         
Sbjct: 547 -WQHPTRGLVPPDEFIPLAEQSGAIIPLGQWVIREACRIAAAWPSKLTVAVNLSPIQFRH 605

Query: 104 -DVISIVRDGLK 114
            DV++IVRD L+
Sbjct: 606 SDVVAIVRDALQ 617


>gi|298290785|ref|YP_003692724.1| resolvase [Starkeya novella DSM 506]
 gi|296927296|gb|ADH88105.1| Resolvase domain protein [Starkeya novella DSM 506]
          Length = 575

 Score = 34.1 bits (77), Expect = 6.7,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 34/72 (47%), Gaps = 3/72 (4%)

Query: 22  WILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIG 81
            +  R +  LS A     +  +A++A+    ++    +    ++   +   +  ++++I 
Sbjct: 471 ELYRRKVERLSEALDHPEDRYEAIDAI---RQLVTRVVLTPGAKRGEVHAVLHGDIVAIA 527

Query: 82  LWVLKECERIRR 93
            WVLKE ER R+
Sbjct: 528 DWVLKETERPRK 539


>gi|171854883|dbj|BAG16625.1| cyclase/phosphodiesterase homolog [Azotobacter vinelandii]
          Length = 627

 Score = 34.1 bits (77), Expect = 7.0,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 11/108 (10%)

Query: 2   RQYYHETIQESSIECRKRE---HWILDRS-ISLLSIAHKSLPNSK-QAVEALFYTSRVWV 56
            Q+Y  ++       R+ E   H  L R  + LL     +  N + + VEAL      W 
Sbjct: 350 YQFYIASVDREMRHRRELEKDLHEALARGELQLLYQPQLNYRNQRVEGVEALLR----WR 405

Query: 57  VFIQDLVSEDN-HLPQEVKLNLISIGLWVLKE-CERIRRNKSNSYQDI 102
                LV  D   L  E   ++I IG WVL++ C ++R      + ++
Sbjct: 406 HPRHGLVPPDQFVLLAEHSGSIIPIGEWVLEQACRQLREWHDQGFCEL 453


>gi|226945829|ref|YP_002800902.1| GGDEF domain-containing protein [Azotobacter vinelandii DJ]
 gi|226720756|gb|ACO79927.1| GGDEF domain-containing protein [Azotobacter vinelandii DJ]
          Length = 691

 Score = 33.7 bits (76), Expect = 7.8,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 11/108 (10%)

Query: 2   RQYYHETIQESSIECRKRE---HWILDRS-ISLLSIAHKSLPNSK-QAVEALFYTSRVWV 56
            Q+Y  ++       R+ E   H  L R  + LL     +  N + + VEAL      W 
Sbjct: 414 YQFYIASVDREMRHRRELEKDLHEALARGELQLLYQPQLNYRNQRVEGVEALLR----WR 469

Query: 57  VFIQDLVSEDN-HLPQEVKLNLISIGLWVLKECER-IRRNKSNSYQDI 102
                LV  D   L  E   ++I IG WVL++  R +R      + ++
Sbjct: 470 HPRHGLVPPDQFVLLAEHSGSIIPIGEWVLEQACRQLREWHDQGFCEL 517


>gi|328767572|gb|EGF77621.1| hypothetical protein BATDEDRAFT_13838 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 751

 Score = 33.7 bits (76), Expect = 8.0,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 41/105 (39%), Gaps = 17/105 (16%)

Query: 6   HETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI------ 59
            + +++ +   R+ +  +LDR    L I  +     ++AV       ++W +        
Sbjct: 462 AQELEDRARMQRELQRELLDRDEMNLQIEEEFSNLQEEAVSKTRKLKKLWNMMQQQKSEL 521

Query: 60  -----------QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRR 93
                      +DL+     L +E+KL  + IG +V  E + I  
Sbjct: 522 KDVQEEHQREREDLLETIRELTRELKLRNLVIGGFVPVEEQTIIE 566


>gi|104780333|ref|YP_606831.1| diguanylate cyclase/phosphodiesterase [Pseudomonas entomophila L48]
 gi|95109320|emb|CAK14020.1| putative diguanylate cyclase/phosphodiesterase (GGDEF and EAL
           domain) [Pseudomonas entomophila L48]
          Length = 683

 Score = 33.7 bits (76), Expect = 9.2,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 11/108 (10%)

Query: 2   RQYYHETIQESSIECRKRE---HWILDRSISLLSIAHKSLPNSKQ--AVEALFYTSRVWV 56
            Q+Y  ++       R+ E      L R+   L    +      +   VEAL      W 
Sbjct: 408 YQFYIASVDSEMRRRRELEKDLREALPRNQLYLVYQPQISYRDHRVVGVEALLR----WQ 463

Query: 57  VFIQDLVSEDNHLPQ-EVKLNLISIGLWVLKE-CERIRRNKSNSYQDI 102
                +V  D  +P  E   N+ISIG WVL + C ++R      + ++
Sbjct: 464 HPELGMVPPDQFIPLAEQNGNIISIGEWVLDQACRQLREWHDLGFGEL 511


>gi|107100049|ref|ZP_01363967.1| hypothetical protein PaerPA_01001070 [Pseudomonas aeruginosa PACS2]
          Length = 699

 Score = 33.7 bits (76), Expect = 9.2,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 40/108 (37%), Gaps = 11/108 (10%)

Query: 2   RQYYHETIQESSIECRKRE---HWILDRSISLLSIAHKSLPNSKQ--AVEALFYTSRVWV 56
            Q+Y  ++       R+ E      L R    L    +      +   VEAL      W 
Sbjct: 420 YQFYIASVDSEMRRRRELEKDLRDALQRHELHLVYQPQVDYRDHRVVGVEALLR----WQ 475

Query: 57  VFIQDLVSEDNHLPQ-EVKLNLISIGLWVLKE-CERIRRNKSNSYQDI 102
             +   V  D  +P  E   ++ SIG WVL + C ++R      + D+
Sbjct: 476 HPLHGFVPPDLFIPLAEQNGSIFSIGEWVLDQACRQLREWHDQGFDDL 523


>gi|254244823|ref|ZP_04938145.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|126198201|gb|EAZ62264.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
          Length = 687

 Score = 33.7 bits (76), Expect = 9.6,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 40/108 (37%), Gaps = 11/108 (10%)

Query: 2   RQYYHETIQESSIECRKRE---HWILDRSISLLSIAHKSLPNSKQ--AVEALFYTSRVWV 56
            Q+Y  ++       R+ E      L R    L    +      +   VEAL      W 
Sbjct: 408 YQFYIASVDSEMRRRRELEKDLRDALQRHELHLVYQPQVDYRDHRVVGVEALLR----WQ 463

Query: 57  VFIQDLVSEDNHLPQ-EVKLNLISIGLWVLKE-CERIRRNKSNSYQDI 102
             +   V  D  +P  E   ++ SIG WVL + C ++R      + D+
Sbjct: 464 HPLHGFVPPDLFIPLAEQNGSIFSIGEWVLDQACRQLREWHDQGFDDL 511


>gi|152985064|ref|YP_001350274.1| putative lipoprotein [Pseudomonas aeruginosa PA7]
 gi|150960222|gb|ABR82247.1| lipoprotein, putative [Pseudomonas aeruginosa PA7]
          Length = 686

 Score = 33.4 bits (75), Expect = 9.8,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 40/108 (37%), Gaps = 11/108 (10%)

Query: 2   RQYYHETIQESSIECRKRE---HWILDRSISLLSIAHKSLPNSKQ--AVEALFYTSRVWV 56
            Q+Y  ++       R+ E      L R    L    +      +   VEAL      W 
Sbjct: 408 YQFYIASVDSEMRRRRELEKDLRDALQRHELHLVYQPQVDYRDHRVVGVEALLR----WQ 463

Query: 57  VFIQDLVSEDNHLPQ-EVKLNLISIGLWVLKE-CERIRRNKSNSYQDI 102
             +   V  D  +P  E   ++ SIG WVL + C ++R      + D+
Sbjct: 464 HPLHGFVPPDLFIPLAEQNGSIFSIGEWVLDQACRQLREWHDQGFDDL 511


>gi|15599563|ref|NP_253057.1| BifA [Pseudomonas aeruginosa PAO1]
 gi|116052401|ref|YP_792712.1| GGDEF domain/EAL domain-containing protein [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218893458|ref|YP_002442327.1| putative GGDEF domain/EAL domain protein [Pseudomonas aeruginosa
           LESB58]
 gi|254238970|ref|ZP_04932293.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|296391074|ref|ZP_06880549.1| putative GGDEF domain/EAL domain protein [Pseudomonas aeruginosa
           PAb1]
 gi|313106896|ref|ZP_07793100.1| putative GGDEF domain-containing/EAL domain-containing protein
           [Pseudomonas aeruginosa 39016]
 gi|9950595|gb|AAG07755.1|AE004852_8 BifA [Pseudomonas aeruginosa PAO1]
 gi|115587622|gb|ABJ13637.1| putative GGDEF domain/EAL domain protein [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126170901|gb|EAZ56412.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|218773686|emb|CAW29500.1| putative GGDEF domain/EAL domain protein [Pseudomonas aeruginosa
           LESB58]
 gi|310879602|gb|EFQ38196.1| putative GGDEF domain-containing/EAL domain-containing protein
           [Pseudomonas aeruginosa 39016]
          Length = 687

 Score = 33.4 bits (75), Expect = 9.8,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 40/108 (37%), Gaps = 11/108 (10%)

Query: 2   RQYYHETIQESSIECRKRE---HWILDRSISLLSIAHKSLPNSKQ--AVEALFYTSRVWV 56
            Q+Y  ++       R+ E      L R    L    +      +   VEAL      W 
Sbjct: 408 YQFYIASVDSEMRRRRELEKDLRDALQRHELHLVYQPQVDYRDHRVVGVEALLR----WQ 463

Query: 57  VFIQDLVSEDNHLPQ-EVKLNLISIGLWVLKE-CERIRRNKSNSYQDI 102
             +   V  D  +P  E   ++ SIG WVL + C ++R      + D+
Sbjct: 464 HPLHGFVPPDLFIPLAEQNGSIFSIGEWVLDQACRQLREWHDQGFDDL 511


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.307    0.148    0.424 

Lambda     K      H
   0.267   0.0464    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,247,750,209
Number of Sequences: 14124377
Number of extensions: 82385713
Number of successful extensions: 236842
Number of sequences better than 10.0: 331
Number of HSP's better than 10.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 184
Number of HSP's that attempted gapping in prelim test: 236446
Number of HSP's gapped (non-prelim): 451
length of query: 114
length of database: 4,842,793,630
effective HSP length: 81
effective length of query: 33
effective length of database: 3,698,719,093
effective search space: 122057730069
effective search space used: 122057730069
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.9 bits)
S2: 76 (33.7 bits)