BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780522|ref|YP_003064935.1| flagellar biosynthesis
regulatory protein FlaF [Candidatus Liberibacter asiaticus str. psy62]
         (114 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|222147592|ref|YP_002548549.1| flagellar biosynthesis regulatory protein FlaF [Agrobacterium vitis
           S4]
 gi|221734580|gb|ACM35543.1| FLAF protein [Agrobacterium vitis S4]
          Length = 115

 Score =  130 bits (328), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 58/115 (50%), Positives = 83/115 (72%), Gaps = 1/115 (0%)

Query: 1   MRQ-YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M Q  Y+E +++   + ++RE  +LDRSI LLS A  +    ++ +EAL+YT RVW+ FI
Sbjct: 1   MYQFSYNEIMEDGVADAKERERQVLDRSIDLLSQAKTAGKYGREGIEALYYTRRVWIRFI 60

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +DL   DN L  E++ NLISI LW+LKEC+RIR+ +S++YQ IIDV +I+RDGLK
Sbjct: 61  EDLKQPDNQLGTELRANLISIALWILKECDRIRKRESDNYQGIIDVTTIIRDGLK 115


>gi|116250503|ref|YP_766341.1| flagellar biosynthesis regulatory protein FlaF [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115255151|emb|CAK06225.1| putative flagellar synthesis related protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 115

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 60/111 (54%), Positives = 83/111 (74%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
            Y E +Q+S  + ++RE  +LDRSI LLS+A +     ++A+EALFYT RVW+ FI+DL 
Sbjct: 5   SYAEVMQDSVADAKEREWQVLDRSIDLLSLAREKEKYGREAIEALFYTRRVWISFIEDLK 64

Query: 64  SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
             DN L  E++ NLISI +W+LKEC+RIR+ +SN+YQ IIDV +I+RDGLK
Sbjct: 65  HPDNQLEIELRANLISIAIWILKECDRIRKRQSNNYQGIIDVTTIIRDGLK 115


>gi|110632637|ref|YP_672845.1| flagellar biosynthesis regulatory protein FlaF [Mesorhizobium sp.
           BNC1]
 gi|110283621|gb|ABG61680.1| flagellar FlaF [Chelativorans sp. BNC1]
          Length = 115

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 45/111 (40%), Positives = 77/111 (69%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
            Y E + +S  + + RE  +L RSI LL+ A ++ P S++A+EA+ + +RVW   ++DL 
Sbjct: 5   SYSEVLSDSVADAKDRERQLLTRSIDLLTQAREAGPRSREAIEAILFMNRVWTSLVEDLG 64

Query: 64  SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
              N LP+E++ NLISIGLW+L+E E +R+ +S+++  +I++  I+RDGL+
Sbjct: 65  DPGNALPKELRANLISIGLWLLREGEEVRQGRSDNFDGLIEISQIIRDGLR 115


>gi|254780522|ref|YP_003064935.1| flagellar biosynthesis regulatory protein FlaF [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254040199|gb|ACT56995.1| flagellar biosynthesis regulatory protein FlaF [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 114

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 114/114 (100%), Positives = 114/114 (100%)

Query: 1   MRQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQ 60
           MRQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQ
Sbjct: 1   MRQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQ 60

Query: 61  DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK
Sbjct: 61  DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114


>gi|241203127|ref|YP_002974223.1| flagellar biosynthesis regulatory protein FlaF [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240857017|gb|ACS54684.1| flagellar FlaF family protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 115

 Score =  128 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 58/111 (52%), Positives = 81/111 (72%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
            Y E +Q+S  + ++RE  +LDRSI LL+ A +     ++A+EALFYT RVW+ FI+DL 
Sbjct: 5   SYAEVMQDSVADAKEREWQVLDRSIDLLAAAREKEKYGREAIEALFYTRRVWISFIEDLK 64

Query: 64  SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
             DN L   ++ NLISI +W+LKEC+RIR+ +SN+YQ IIDV +I+RDGLK
Sbjct: 65  HPDNQLEIGLRANLISIAIWILKECDRIRKRQSNNYQGIIDVTTIIRDGLK 115


>gi|209547949|ref|YP_002279866.1| flagellar biosynthesis regulatory protein FlaF [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209533705|gb|ACI53640.1| flagellar FlaF family protein [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 115

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 60/111 (54%), Positives = 82/111 (73%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
            Y E +Q+S  + ++RE  +LDRSI LLS+A +     ++A+EALFYT RVW+ FI+DL 
Sbjct: 5   SYAEVMQDSVADAKEREWQVLDRSIDLLSLAREKEKYGREAIEALFYTRRVWISFIEDLK 64

Query: 64  SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
             DN L  E++ NLISI +W+LKEC+RIR+  SN+YQ IIDV +I+RDGLK
Sbjct: 65  HPDNQLEIELRANLISIAIWILKECDRIRKRLSNNYQGIIDVTTIIRDGLK 115


>gi|222084888|ref|YP_002543417.1| flagellin synthesis regulator protein [Agrobacterium radiobacter
           K84]
 gi|221722336|gb|ACM25492.1| flagellin synthesis regulator protein [Agrobacterium radiobacter
           K84]
          Length = 115

 Score =  127 bits (320), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 61/111 (54%), Positives = 82/111 (73%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
            Y E +Q++  + ++RE  +LDRSI+LL+ A       ++A+EALFYT RVWV FI+DL 
Sbjct: 5   SYAEVMQDAVADAKERERQVLDRSITLLAAARDKEKYGREAIEALFYTRRVWVSFIEDLK 64

Query: 64  SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           S DN L  E++ NLISI LW+LKEC+RIRR +S +YQ IIDV +I+RDGLK
Sbjct: 65  SPDNQLNVELRANLISIALWILKECDRIRRRQSENYQGIIDVTTIIRDGLK 115


>gi|86356333|ref|YP_468225.1| flagellar biosynthesis regulatory protein FlaF [Rhizobium etli CFN
           42]
 gi|218671598|ref|ZP_03521268.1| flagellar biosynthesis regulatory protein FlaF [Rhizobium etli
           GR56]
 gi|86280435|gb|ABC89498.1| flagellin synthesis regulator protein [Rhizobium etli CFN 42]
          Length = 115

 Score =  127 bits (320), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 59/111 (53%), Positives = 81/111 (72%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
            Y E +Q+S  + ++RE  +LDRSI LLS+A       ++A+EALFYT RVW+ FI+DL 
Sbjct: 5   SYAEVMQDSVADAKEREWQVLDRSIELLSLARDKEKYGREAIEALFYTRRVWISFIEDLK 64

Query: 64  SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
             DN L  +++ NLISI +W+LKEC+RIR+  SN+YQ IIDV +I+RDGLK
Sbjct: 65  HPDNQLDVQLRANLISIAIWILKECDRIRKRLSNNYQGIIDVTTIIRDGLK 115


>gi|114706625|ref|ZP_01439526.1| flagellar protein flaF [Fulvimarina pelagi HTCC2506]
 gi|114538017|gb|EAU41140.1| flagellar protein flaF [Fulvimarina pelagi HTCC2506]
          Length = 115

 Score =  127 bits (320), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 47/110 (42%), Positives = 75/110 (68%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
            Y E  Q+++++ R+RE    D SI+LL  A KS P S+ A+EA++ T  +W + ++DL 
Sbjct: 5   SYAEVAQDTAVDARERERQAFDHSIALLEKAEKSGPRSRDAIEAIYITRSLWSILVEDLG 64

Query: 64  SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
           S DN LP+E++  LISIGLW++ E E IR  KS +++ I+++  ++RDGL
Sbjct: 65  SADNGLPEELRAELISIGLWIMSEAEAIRVGKSTNFKGIVEITRLIRDGL 114


>gi|190890385|ref|YP_001976927.1| flagellin synthesis regulator protein [Rhizobium etli CIAT 652]
 gi|190695664|gb|ACE89749.1| flagellin synthesis regulator protein [Rhizobium etli CIAT 652]
 gi|327193062|gb|EGE59974.1| flagellin synthesis regulator protein [Rhizobium etli CNPAF512]
          Length = 115

 Score =  127 bits (320), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 58/111 (52%), Positives = 81/111 (72%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
            Y E +Q+S  + ++RE  +LDRSI LL++A       ++A+EALFYT RVW+ FI+DL 
Sbjct: 5   SYAEVMQDSVADAKEREWQVLDRSIELLALARDKDKYGREAIEALFYTRRVWISFIEDLK 64

Query: 64  SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
             DN L  +++ NLISI +W+LKEC+RIR+  SN+YQ IIDV +I+RDGLK
Sbjct: 65  HPDNQLDVQLRANLISIAIWILKECDRIRKRLSNNYQGIIDVTTIIRDGLK 115


>gi|254473396|ref|ZP_05086793.1| flagellar FlaF [Pseudovibrio sp. JE062]
 gi|211957512|gb|EEA92715.1| flagellar FlaF [Pseudovibrio sp. JE062]
          Length = 115

 Score =  126 bits (318), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 40/112 (35%), Positives = 69/112 (61%)

Query: 2   RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQD 61
           +  Y ET+++SS + R +E  +    ++ L  A +    S +A +AL    R+W + I D
Sbjct: 3   QMSYAETLEDSSEDRRGQERELFSLVVAQLQAADEHGSASSEAAQALTSVHRLWSILISD 62

Query: 62  LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
           L S +N LP E++ +LISIG+W +K+ + IR  KS+ ++ +I++  +VRDGL
Sbjct: 63  LGSPENGLPAELRADLISIGIWCVKQADLIREGKSDDFKSLIEINELVRDGL 114


>gi|315500093|ref|YP_004088896.1| flagellar flaf family protein [Asticcacaulis excentricus CB 48]
 gi|315418105|gb|ADU14745.1| flagellar FlaF family protein [Asticcacaulis excentricus CB 48]
          Length = 136

 Score =  126 bits (318), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 52/112 (46%), Gaps = 3/112 (2%)

Query: 3   QYYHETIQESSIECRKREHWILDRSISLLSIAHK-SLPNSKQAVEALFYTSRVWVVFIQD 61
           Q Y +T Q S  + R+ E+ +  +    L  A +       + ++AL +  R+W V   D
Sbjct: 4   QAYQKTAQRS-EDPRQTEYRLFGQVTRALMEAAELDRSEVSRRMDALDWNRRLWSVLGTD 62

Query: 62  LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
                N LP+ ++  ++S+ +WV +    + R +      +I+V  ++  GL
Sbjct: 63  CALPGNGLPETLRAQIVSLSIWVNRHTSAVMRGQEE-IAPLIEVNRLIMQGL 113


>gi|218462422|ref|ZP_03502513.1| flagellar biosynthesis regulatory protein FlaF [Rhizobium etli Kim
           5]
          Length = 115

 Score =  126 bits (318), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 58/111 (52%), Positives = 81/111 (72%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
            Y E +Q+S  + ++RE  +LDRSI LL++A       ++A+EALFYT RVW+ FI+DL 
Sbjct: 5   SYAEVMQDSVADAKEREWQVLDRSIELLALARDKEKYGREAIEALFYTRRVWISFIEDLK 64

Query: 64  SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
             DN L  +++ NLISI +W+LKEC+RIR+  SN+YQ IIDV +I+RDGLK
Sbjct: 65  HPDNQLDVQLRANLISIAIWILKECDRIRKRLSNNYQGIIDVTTIIRDGLK 115


>gi|296445193|ref|ZP_06887153.1| flagellar FlaF family protein [Methylosinus trichosporium OB3b]
 gi|296257367|gb|EFH04434.1| flagellar FlaF family protein [Methylosinus trichosporium OB3b]
          Length = 115

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 43/112 (38%), Positives = 73/112 (65%)

Query: 2   RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQD 61
           R  Y +T Q+SS   R RE  +L+R+I LL++A    P S+++ EA     R+W++F+ D
Sbjct: 3   RHLYAQTAQDSSAVARGRERDVLERAIRLLAVAKVKGPRSRESFEATDNLRRLWLLFVDD 62

Query: 62  LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
           L S+ N LP+ ++ +LISIGLWV++E + I   K +++  +I++  ++ DGL
Sbjct: 63  LSSDGNALPEALRASLISIGLWVMREVDAIDSGKCDNFDGLIEINQMIADGL 114


>gi|302383513|ref|YP_003819336.1| flagellar FlaF family protein [Brevundimonas subvibrioides ATCC
           15264]
 gi|302194141|gb|ADL01713.1| flagellar FlaF family protein [Brevundimonas subvibrioides ATCC
           15264]
          Length = 120

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 3/114 (2%)

Query: 1   MRQYYHETIQESSIECRKREHWILDRSISLLSIAHK-SLPNSKQAVEALFYTSRVWVVFI 59
           M + Y +     +   R+ E+ +  +    L  A      + K  ++AL +  R+W V  
Sbjct: 1   MLKAYAQ-ASTRTETPREMEYRLFGQVTRALMHAATVDPSDVKTRIDALDWNRRLWSVLA 59

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
            D     N L   ++  +ISI L+V +    I R +   ++ +ID+   +  GL
Sbjct: 60  TDCSDPSNQLNTPLRAQIISISLFVGRHSSAIMRGE-EDFEALIDINRSIMQGL 112


>gi|239834424|ref|ZP_04682752.1| flagellar biosynthesis regulatory protein FlaF [Ochrobactrum
           intermedium LMG 3301]
 gi|239822487|gb|EEQ94056.1| flagellar biosynthesis regulatory protein FlaF [Ochrobactrum
           intermedium LMG 3301]
          Length = 114

 Score =  124 bits (312), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 43/109 (39%), Positives = 75/109 (68%)

Query: 5   YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64
           Y + + +     R+RE  + DRSI++L +A ++   S++ ++A ++T+++W   I DL S
Sbjct: 6   YEDVMTDDMASARERERTLFDRSIAMLELAKENGSGSREGIDATYFTTKLWTTIIDDLGS 65

Query: 65  EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
           E+N LP+E+K  +IS+G++VLKE ERIR+ +SN Y  +I++   +RDGL
Sbjct: 66  EENVLPKELKAAIISVGIFVLKEIERIRQGESNDYATLIEITQSIRDGL 114


>gi|153011505|ref|YP_001372719.1| flagellar biosynthesis regulatory protein FlaF [Ochrobactrum
           anthropi ATCC 49188]
 gi|151563393|gb|ABS16890.1| flagellar FlaF family protein [Ochrobactrum anthropi ATCC 49188]
          Length = 114

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 43/109 (39%), Positives = 74/109 (67%)

Query: 5   YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64
           Y + + +     ++RE  + DRSI++L  A  +   S++A++A ++T+++W   I DL S
Sbjct: 6   YEDVMNDDMASAKERERALFDRSIAMLEAAKANGSGSREAIDAAYFTTKLWTTIIDDLGS 65

Query: 65  EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
           E+N LP+E+K  +IS+G++VLKE ERIR+ +SN Y  +I++   +RDGL
Sbjct: 66  EENVLPKELKAAIISVGIFVLKEIERIRQGESNDYATLIEITQSIRDGL 114


>gi|260466600|ref|ZP_05812788.1| flagellar FlaF family protein [Mesorhizobium opportunistum WSM2075]
 gi|259029606|gb|EEW30894.1| flagellar FlaF family protein [Mesorhizobium opportunistum WSM2075]
          Length = 115

 Score =  122 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 49/111 (44%), Positives = 78/111 (70%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
            Y +    S  + + RE  +L RSI +LS A  +  +S +AVEAL +T+RVW  F++DL 
Sbjct: 5   SYADVQSTSVSDAKDRERELLTRSIDMLSAAAAAGQDSMEAVEALHFTNRVWTTFVEDLG 64

Query: 64  SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           S DN LP+E++ NLISIGLW+L+E E IR+ ++++++ +I+V  I+RDG++
Sbjct: 65  SSDNALPKELRANLISIGLWLLREAEDIRQGRTDNFEGLIEVSQIIRDGIQ 115


>gi|83858827|ref|ZP_00952349.1| flaF protein [Oceanicaulis alexandrii HTCC2633]
 gi|83853650|gb|EAP91502.1| flaF protein [Oceanicaulis alexandrii HTCC2633]
          Length = 118

 Score =  122 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 3/113 (2%)

Query: 2   RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSL-PNSKQAVEALFYTSRVWVVFIQ 60
            Q Y +T    + + R+ E+ +L      L     +     +Q V AL    RVW  F  
Sbjct: 3   YQAY-KTASSRTEDPRQTEYRLLGEVTRGLMEVRDAPKSEIRQRVAALDRNRRVWSAFAA 61

Query: 61  DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
           D  S  N+LP  ++  +IS+ ++V KE     R ++   + +ID+   +  GL
Sbjct: 62  DCASSHNNLPDSLRAGIISLSIFVSKETSAAMRGET-DVETLIDINRTIMQGL 113


>gi|217976243|ref|YP_002360390.1| flagellar biosynthesis regulatory protein FlaF [Methylocella
           silvestris BL2]
 gi|217501619|gb|ACK49028.1| flagellar FlaF family protein [Methylocella silvestris BL2]
          Length = 115

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 43/111 (38%), Positives = 72/111 (64%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
            Y E+++ S  ECR+RE   LD ++ LL  A      S  A EAL +  R+W   I+DL+
Sbjct: 5   SYAESLESSPGECRERERRALDHALQLLEKARHDGVGSAAAAEALHFLCRLWKALIEDLI 64

Query: 64  SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           S +N LP  ++ +L+S+G+WVL+E + IR  KS++++ +I++ S +R+GL+
Sbjct: 65  SPENDLPDVLRGDLVSVGIWVLREADSIREEKSSNFRGLIEICSAIRNGLR 115


>gi|225628426|ref|ZP_03786460.1| Protein flaF [Brucella ceti str. Cudo]
 gi|254706499|ref|ZP_05168327.1| flagellar biosynthesis regulatory protein FlaF [Brucella
           pinnipedialis M163/99/10]
 gi|254711216|ref|ZP_05173027.1| flagellar biosynthesis regulatory protein FlaF [Brucella
           pinnipedialis B2/94]
 gi|254711815|ref|ZP_05173626.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti
           M644/93/1]
 gi|254714884|ref|ZP_05176695.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti
           M13/05/1]
 gi|256030155|ref|ZP_05443769.1| flagellar biosynthesis regulatory protein FlaF [Brucella
           pinnipedialis M292/94/1]
 gi|256158334|ref|ZP_05456238.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti
           M490/95/1]
 gi|256252732|ref|ZP_05458268.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti
           B1/94]
 gi|260166793|ref|ZP_05753604.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. F5/99]
 gi|261216574|ref|ZP_05930855.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti
           M13/05/1]
 gi|261219810|ref|ZP_05934091.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti
           B1/94]
 gi|261313953|ref|ZP_05953150.1| flagellar biosynthesis regulatory protein FlaF [Brucella
           pinnipedialis M163/99/10]
 gi|261318807|ref|ZP_05958004.1| flagellar biosynthesis regulatory protein FlaF [Brucella
           pinnipedialis B2/94]
 gi|261319444|ref|ZP_05958641.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti
           M644/93/1]
 gi|261756170|ref|ZP_05999879.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. F5/99]
 gi|265987186|ref|ZP_06099743.1| flagellar biosynthesis regulatory protein FlaF [Brucella
           pinnipedialis M292/94/1]
 gi|265996849|ref|ZP_06109406.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti
           M490/95/1]
 gi|225616272|gb|EEH13320.1| Protein flaF [Brucella ceti str. Cudo]
 gi|260918394|gb|EEX85047.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti
           B1/94]
 gi|260921663|gb|EEX88231.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti
           M13/05/1]
 gi|261292134|gb|EEX95630.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti
           M644/93/1]
 gi|261298030|gb|EEY01527.1| flagellar biosynthesis regulatory protein FlaF [Brucella
           pinnipedialis B2/94]
 gi|261302979|gb|EEY06476.1| flagellar biosynthesis regulatory protein FlaF [Brucella
           pinnipedialis M163/99/10]
 gi|261736154|gb|EEY24150.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. F5/99]
 gi|262551146|gb|EEZ07307.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti
           M490/95/1]
 gi|264659383|gb|EEZ29644.1| flagellar biosynthesis regulatory protein FlaF [Brucella
           pinnipedialis M292/94/1]
          Length = 114

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 43/109 (39%), Positives = 74/109 (67%)

Query: 5   YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64
           Y + + +     ++RE  + DRSI++L +A  +   S++ ++A ++TS++W   I DL S
Sbjct: 6   YEDVMNDDMASAKERERMLFDRSIAMLEVARANGAESREGIDAAYFTSKLWTTIIDDLGS 65

Query: 65  EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
           E+N LP+E++  +ISIG++VLKE ERIR+ +SN Y  +I++   +RDGL
Sbjct: 66  EENALPKELRAAIISIGIFVLKEIERIRQGESNDYATLIEITQSIRDGL 114


>gi|170748122|ref|YP_001754382.1| flagellar biosynthesis regulatory protein FlaF [Methylobacterium
           radiotolerans JCM 2831]
 gi|170654644|gb|ACB23699.1| flagellar FlaF family protein [Methylobacterium radiotolerans JCM
           2831]
          Length = 119

 Score =  121 bits (303), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 67/112 (59%)

Query: 3   QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDL 62
           + Y ET+ +S    R+RE    DR+I L+  A  +  +++   EA  +  R+W + I DL
Sbjct: 8   EAYRETMGDSPAIGREREREAFDRAIELMKRADAAEASAELRWEATSFLQRLWSMLIDDL 67

Query: 63  VSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
            +  N LP +++ +LISIGLW +   ++I R  ++ ++ +I V +++RDGL+
Sbjct: 68  ANPANSLPPQLRADLISIGLWNMSRSDQILRGDASGFEPLIYVNTLIRDGLR 119


>gi|23500851|ref|NP_700291.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis 1330]
 gi|62317954|ref|YP_223807.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
           bv. 1 str. 9-941]
 gi|83269931|ref|YP_419222.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis
           biovar Abortus 2308]
 gi|148558679|ref|YP_001258001.1| flagellar biosynthesis regulatory protein FlaF [Brucella ovis ATCC
           25840]
 gi|161621179|ref|YP_001595065.1| flagellar biosynthesis regulatory protein FlaF [Brucella canis ATCC
           23365]
 gi|163845454|ref|YP_001623109.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis ATCC
           23445]
 gi|189023205|ref|YP_001932946.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
           S19]
 gi|225686882|ref|YP_002734854.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis
           ATCC 23457]
 gi|237817499|ref|ZP_04596490.1| Protein flaF [Brucella abortus str. 2308 A]
 gi|254691614|ref|ZP_05154868.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
           bv. 6 str. 870]
 gi|254695090|ref|ZP_05156918.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
           bv. 3 str. Tulya]
 gi|254698186|ref|ZP_05160014.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|254699259|ref|ZP_05161087.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis bv. 5
           str. 513]
 gi|254702380|ref|ZP_05164208.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis bv. 3
           str. 686]
 gi|254720776|ref|ZP_05182587.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. 83/13]
 gi|254731631|ref|ZP_05190209.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
           bv. 4 str. 292]
 gi|256015895|ref|YP_003105904.1| flagellar biosynthesis regulatory protein FlaF [Brucella microti
           CCM 4915]
 gi|256059807|ref|ZP_05450002.1| flagellar biosynthesis regulatory protein FlaF [Brucella neotomae
           5K33]
 gi|256112179|ref|ZP_05453100.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis
           bv. 3 str. Ether]
 gi|256256801|ref|ZP_05462337.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
           bv. 9 str. C68]
 gi|256261981|ref|ZP_05464513.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis
           bv. 2 str. 63/9]
 gi|260544139|ref|ZP_05819960.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
           NCTC 8038]
 gi|260568717|ref|ZP_05839186.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis bv. 4
           str. 40]
 gi|260757245|ref|ZP_05869593.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
           bv. 6 str. 870]
 gi|260759390|ref|ZP_05871738.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
           bv. 4 str. 292]
 gi|260762633|ref|ZP_05874965.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260883049|ref|ZP_05894663.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
           bv. 9 str. C68]
 gi|261215441|ref|ZP_05929722.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
           bv. 3 str. Tulya]
 gi|261323787|ref|ZP_05962984.1| flagellar biosynthesis regulatory protein FlaF [Brucella neotomae
           5K33]
 gi|261749699|ref|ZP_05993408.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis bv. 5
           str. 513]
 gi|261752943|ref|ZP_05996652.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis bv. 3
           str. 686]
 gi|265985834|ref|ZP_06098569.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. 83/13]
 gi|265993606|ref|ZP_06106163.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis
           bv. 3 str. Ether]
 gi|294852965|ref|ZP_06793637.1| flagellar protein FlaF [Brucella sp. NVSL 07-0026]
 gi|297250154|ref|ZP_06933855.1| flaF, flagellar biosynthesis regulatory protein FlaF [Brucella
           abortus bv. 5 str. B3196]
 gi|306840133|ref|ZP_07472918.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. NF
           2653]
 gi|306841279|ref|ZP_07473990.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. BO2]
 gi|23464515|gb|AAN34296.1| flagellar protein FlaF, putative [Brucella suis 1330]
 gi|62198147|gb|AAX76446.1| hypothetical FlaF [Brucella abortus bv. 1 str. 9-941]
 gi|82940205|emb|CAJ13261.1| flagellar protein FlaF, putative [Brucella melitensis biovar
           Abortus 2308]
 gi|148369964|gb|ABQ62836.1| putative flagellar protein FlaF [Brucella ovis ATCC 25840]
 gi|161337990|gb|ABX64294.1| flagellar FlaF family protein [Brucella canis ATCC 23365]
 gi|163676177|gb|ABY40287.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
 gi|189021779|gb|ACD74500.1| flagellar protein FlaF, putative [Brucella abortus S19]
 gi|225642987|gb|ACO02900.1| Protein flaF [Brucella melitensis ATCC 23457]
 gi|237787334|gb|EEP61551.1| Protein flaF [Brucella abortus str. 2308 A]
 gi|255998555|gb|ACU50242.1| flagellar biosynthesis regulatory protein FlaF [Brucella microti
           CCM 4915]
 gi|260097410|gb|EEW81284.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
           NCTC 8038]
 gi|260155382|gb|EEW90463.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis bv. 4
           str. 40]
 gi|260669708|gb|EEX56648.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
           bv. 4 str. 292]
 gi|260673054|gb|EEX59875.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260677353|gb|EEX64174.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
           bv. 6 str. 870]
 gi|260872577|gb|EEX79646.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
           bv. 9 str. C68]
 gi|260917048|gb|EEX83909.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
           bv. 3 str. Tulya]
 gi|261299767|gb|EEY03264.1| flagellar biosynthesis regulatory protein FlaF [Brucella neotomae
           5K33]
 gi|261739452|gb|EEY27378.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis bv. 5
           str. 513]
 gi|261742696|gb|EEY30622.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis bv. 3
           str. 686]
 gi|262764476|gb|EEZ10508.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis
           bv. 3 str. Ether]
 gi|263091465|gb|EEZ16001.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis
           bv. 2 str. 63/9]
 gi|264664426|gb|EEZ34687.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. 83/13]
 gi|294818620|gb|EFG35620.1| flagellar protein FlaF [Brucella sp. NVSL 07-0026]
 gi|297174023|gb|EFH33387.1| flaF, flagellar biosynthesis regulatory protein FlaF [Brucella
           abortus bv. 5 str. B3196]
 gi|306288681|gb|EFM60012.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. BO2]
 gi|306404778|gb|EFM61072.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. NF
           2653]
 gi|326411300|gb|ADZ68364.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis
           M28]
 gi|326554589|gb|ADZ89228.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis
           M5-90]
          Length = 114

 Score =  121 bits (303), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 43/109 (39%), Positives = 73/109 (66%)

Query: 5   YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64
           Y + + +     ++RE  + DRSI++L  A  +   S++ ++A ++TS++W   I DL S
Sbjct: 6   YEDVMNDDMASAKERERMLFDRSIAMLEAARANGAESREGIDAAYFTSKLWTTIIDDLGS 65

Query: 65  EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
           E+N LP+E++  +ISIG++VLKE ERIR+ +SN Y  +I++   +RDGL
Sbjct: 66  EENALPKELRAAIISIGIFVLKEIERIRQGESNDYATLIEITQSIRDGL 114


>gi|167646850|ref|YP_001684513.1| flagellar biosynthesis regulatory protein FlaF [Caulobacter sp.
           K31]
 gi|167349280|gb|ABZ72015.1| flagellar FlaF family protein [Caulobacter sp. K31]
          Length = 120

 Score =  120 bits (302), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 53/111 (47%), Gaps = 3/111 (2%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQ-AVEALFYTSRVWVVFIQDL 62
            Y +T   +    R+ E+ +  +    L  A ++  +     ++AL +  RVW     D 
Sbjct: 5   AYQQTATRT-ENPREMEYRLFGQVTRALMAASEAPADDIATRIDALDWNRRVWSALATDC 63

Query: 63  VSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
              +N LP +++ ++IS+ LWV +    + R K   ++ +I++  ++  GL
Sbjct: 64  SLPENTLPVQLRASIISLSLWVGRHSSAVMR-KEEDFEPLIEINRMIMQGL 113


>gi|17988506|ref|NP_541139.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis
           bv. 1 str. 16M]
 gi|256042863|ref|ZP_05445809.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|260564100|ref|ZP_05834585.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis
           bv. 1 str. 16M]
 gi|265989298|ref|ZP_06101855.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|17984298|gb|AAL53403.1| flaf protein [Brucella melitensis bv. 1 str. 16M]
 gi|260151743|gb|EEW86836.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis
           bv. 1 str. 16M]
 gi|262999967|gb|EEZ12657.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis
           bv. 1 str. Rev.1]
          Length = 114

 Score =  120 bits (301), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 42/109 (38%), Positives = 73/109 (66%)

Query: 5   YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64
           Y + + +     ++RE  + DR+I++L  A  +   S++ ++A ++TS++W   I DL S
Sbjct: 6   YEDVMNDDMASAKERERMLFDRTIAMLEAARANGAESREGIDAAYFTSKLWTTIIDDLGS 65

Query: 65  EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
           E+N LP+E++  +ISIG++VLKE ERIR+ +SN Y  +I++   +RDGL
Sbjct: 66  EENALPKELRAAIISIGIFVLKEIERIRQGESNDYATLIEITQSIRDGL 114


>gi|319781662|ref|YP_004141138.1| flagellar FlaF family protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317167550|gb|ADV11088.1| flagellar FlaF family protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 115

 Score =  120 bits (301), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 48/111 (43%), Positives = 77/111 (69%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
            Y +    S  + + RE  +L RSI +L+ A  +   S +A+EAL +T+RVW  F++DL 
Sbjct: 5   SYADIQSNSVADAKDRERELLTRSIDMLAAAAVAGHGSMEAIEALHFTNRVWTAFVEDLG 64

Query: 64  SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           S DN LP+E++ NLISIGLW+L+E E IR+ ++N+++ +I+V  I+RDG++
Sbjct: 65  SSDNALPKELRANLISIGLWLLREAEDIRQGRTNNFEGLIEVSQIIRDGIQ 115


>gi|319409166|emb|CBI82810.1| Flaf protein [Bartonella schoenbuchensis R1]
          Length = 122

 Score =  120 bits (301), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 35/109 (32%), Positives = 65/109 (59%)

Query: 5   YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64
           Y + +++ ++  R+RE  + DR I L   A    P S +  EA+ +  ++W++ I+DL  
Sbjct: 6   YEDVMEDDAMSARERERSLFDRCIKLFLDAKAKGPGSHEVNEAVQFARKLWIILIEDLGQ 65

Query: 65  EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
            +N LP E+K +LISIG ++LKE +++   K   +  ++++   +RDGL
Sbjct: 66  AENALPPELKASLISIGFFILKEIQKLDEGKVADFDVLVEISESIRDGL 114


>gi|306845416|ref|ZP_07477990.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. BO1]
 gi|306274159|gb|EFM55975.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. BO1]
          Length = 114

 Score =  120 bits (301), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 42/109 (38%), Positives = 73/109 (66%)

Query: 5   YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64
           Y + + +     ++RE  + DRSI++L  A  +   S++ ++A ++TS++W   I DL S
Sbjct: 6   YEDVMNDDMASAKERERMLFDRSIAMLEAARANGAESREGIDAAYFTSKLWTTIIDDLGS 65

Query: 65  EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
           E+N LP+E++  +ISIG++VLKE ERIR+ +SN Y  +I++   ++DGL
Sbjct: 66  EENALPKELRAAIISIGIFVLKEIERIRQGESNDYATLIEITQSIQDGL 114


>gi|328545488|ref|YP_004305597.1| flagellar protein flaF [polymorphum gilvum SL003B-26A1]
 gi|326415229|gb|ADZ72292.1| Flagellar protein flaF [Polymorphum gilvum SL003B-26A1]
          Length = 116

 Score =  120 bits (301), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 45/111 (40%), Positives = 71/111 (63%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
            Y +TI +  ++ R  E   +D  I+ L  A +    S++AVEA+F T R+W  FI+ L 
Sbjct: 5   SYAQTIDDLCVDQRSDERQAMDIVIAQLERAREKGLKSREAVEAIFNTRRLWSFFIESLA 64

Query: 64  SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
            + N LP  ++ +LISIG+WV+KE ER+R+ ++ +   +IDV ++VRDGLK
Sbjct: 65  DDANELPPSLRADLISIGIWVIKEVERVRQRETETLDALIDVNAMVRDGLK 115


>gi|315122287|ref|YP_004062776.1| flagellar biosynthesis regulatory protein FlaF [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313495689|gb|ADR52288.1| flagellar biosynthesis regulatory protein FlaF [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 114

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 86/114 (75%), Positives = 102/114 (89%)

Query: 1   MRQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQ 60
           MRQYY+E +QESS+E RKRE WIL++SISLLS A +S PNS++ VEAL+YT+RVWVVFIQ
Sbjct: 1   MRQYYNEIVQESSVESRKREFWILNKSISLLSSAQQSKPNSREVVEALYYTNRVWVVFIQ 60

Query: 61  DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           DLVSE N L +EVKLNLISIGLW+L+ECERIRRN+SN+YQ IIDV S+VRDGLK
Sbjct: 61  DLVSESNQLTEEVKLNLISIGLWILEECERIRRNESNNYQAIIDVTSVVRDGLK 114


>gi|13472595|ref|NP_104162.1| flagellar biosynthesis regulatory protein FlaF [Mesorhizobium loti
           MAFF303099]
 gi|14023341|dbj|BAB49948.1| flagellar protein; FlaF [Mesorhizobium loti MAFF303099]
          Length = 115

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 49/111 (44%), Positives = 79/111 (71%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
            Y +    S  + + RE  +L RSI +LS A  +  +S +A+EAL +T+RVW +F++DL 
Sbjct: 5   SYADVQSTSVSDAKDRERELLTRSIDMLSAAAAAGQDSMEAIEALNFTNRVWTIFVEDLG 64

Query: 64  SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           S DN LP+E++ NLISIGLW+L+E E IR+ ++N+++ +I+V  I+RDG++
Sbjct: 65  SSDNALPKELRANLISIGLWLLREAEDIRQGRTNNFEGLIEVSQIIRDGIQ 115


>gi|295689336|ref|YP_003593029.1| flagellar FlaF family protein [Caulobacter segnis ATCC 21756]
 gi|295431239|gb|ADG10411.1| flagellar FlaF family protein [Caulobacter segnis ATCC 21756]
          Length = 120

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 53/111 (47%), Gaps = 3/111 (2%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLSIAHKSL-PNSKQAVEALFYTSRVWVVFIQDL 62
            Y +     +   R+ E+ +  +    L  A ++   +  + ++AL +  +VW     D 
Sbjct: 5   AYQQAA-TRAENPREMEYRLFGQVTRALMEASQAPADDFAKRIDALDWNRKVWSALATDC 63

Query: 63  VSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
              DN LP E++ ++IS+ LWV +    + R K   ++ +I++  I+  GL
Sbjct: 64  SLPDNQLPMELRASIISLSLWVSRHSSAVMR-KEEEFEPLIEINRIIMQGL 113


>gi|325291965|ref|YP_004277829.1| flagellar biosynthesis regulatory protein FlaF [Agrobacterium sp.
           H13-3]
 gi|325059818|gb|ADY63509.1| flagellar biosynthesis regulatory protein FlaF [Agrobacterium sp.
           H13-3]
          Length = 114

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 52/111 (46%), Positives = 74/111 (66%), Gaps = 1/111 (0%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
            Y E +++   + + RE   L +SI LL  A  S  + +  +EALFYT RVW+ FI+DL 
Sbjct: 5   SYAEIMEDGVADAKDRERQALTKSIDLLVEAKDS-SSQRHTIEALFYTRRVWIRFIEDLK 63

Query: 64  SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
             +N L  E++ NLISI +W+LKECE IR+ +S ++Q IIDV +I+RDGLK
Sbjct: 64  QPENQLAMELRANLISIAIWILKECELIRKRQSTNFQGIIDVTTIIRDGLK 114


>gi|170744546|ref|YP_001773201.1| flagellar biosynthesis regulatory protein FlaF [Methylobacterium
           sp. 4-46]
 gi|168198820|gb|ACA20767.1| flagellar FlaF family protein [Methylobacterium sp. 4-46]
          Length = 115

 Score =  118 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 39/113 (34%), Positives = 68/113 (60%)

Query: 2   RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQD 61
           R  Y+E ++++   CR+RE    DR+++LL  A  +    +   EA+ +  R+W V I+D
Sbjct: 3   RFSYNEILEDAPDLCRERERAAFDRALALLRKADAADAKFEDRGEAVSFLQRLWDVLIED 62

Query: 62  LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           L++ +N LP+ ++ +L+SIGLW ++E     R    S   +IDV + +RDGL+
Sbjct: 63  LLNPENGLPEPLRTDLVSIGLWSMREASEALRLPERSLAPLIDVNTAIRDGLR 115


>gi|90418362|ref|ZP_01226274.1| flagellar protein FlaF [Aurantimonas manganoxydans SI85-9A1]
 gi|90338034|gb|EAS51685.1| flagellar protein FlaF [Aurantimonas manganoxydans SI85-9A1]
          Length = 115

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 46/111 (41%), Positives = 72/111 (64%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
            Y E  Q+  ++ R+RE   LD SI  L  A    P S+ A+EA++ T  +W + I+DL 
Sbjct: 5   SYAEVAQDIEVDARERERQALDHSIEQLKKADAEGPRSRAAIEAIYTTRSLWALVIEDLA 64

Query: 64  SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           S DN LP+ ++  LISIGLW+++E E IR  KS +++ II++ +++R+GLK
Sbjct: 65  SADNGLPEALRAELISIGLWIMREAEAIRLGKSENFKGIIEITTLIREGLK 115


>gi|15887922|ref|NP_353603.1| flagellar biosynthesis regulatory protein FlaF [Agrobacterium
           tumefaciens str. C58]
 gi|15155518|gb|AAK86388.1| FLAF protein [Agrobacterium tumefaciens str. C58]
          Length = 114

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 53/111 (47%), Positives = 74/111 (66%), Gaps = 1/111 (0%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
            Y E +++     + RE   L +SI LL  A  S  + + ++EALFYT RVW+ FI+DL 
Sbjct: 5   SYAEIMEDGVANAKDRERQALTKSIDLLVEARDS-SSQRHSIEALFYTRRVWIRFIEDLK 63

Query: 64  SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
             DN L  E++ NLISI +W+LKECE IR+ +S ++Q IIDV +I+RDGLK
Sbjct: 64  QPDNQLAMELRANLISIAIWILKECELIRKRQSTNFQGIIDVTTIIRDGLK 114


>gi|118589963|ref|ZP_01547367.1| flagellar protein flaF [Stappia aggregata IAM 12614]
 gi|118437460|gb|EAV44097.1| flagellar protein flaF [Stappia aggregata IAM 12614]
          Length = 116

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 45/112 (40%), Positives = 66/112 (58%)

Query: 2   RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQD 61
              Y E + +   + R  EH  +   I  L++A +    S +AV+ALFYT R+W  F++ 
Sbjct: 3   NLSYAEVMDDLCSDQRLNEHEAMTIVIGKLNVAKERGVKSPEAVDALFYTRRLWSYFLEH 62

Query: 62  LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
           L  E N LP E + NLIS+G+WVLKE E +R+ +   + DII + SI+RD L
Sbjct: 63  LADEANELPIETRANLISVGIWVLKEVEALRQWEQEDFSDIIQINSIIRDSL 114


>gi|161485648|ref|NP_420272.2| flagellar biosynthesis regulatory protein FlaF [Caulobacter
           crescentus CB15]
 gi|221234463|ref|YP_002516899.1| flagellar biosynthesis regulatory protein FlaF [Caulobacter
           crescentus NA1000]
 gi|220963635|gb|ACL94991.1| flagellar biosynthesis regulatory protein flaF [Caulobacter
           crescentus NA1000]
          Length = 120

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 52/111 (46%), Gaps = 3/111 (2%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQ-AVEALFYTSRVWVVFIQDL 62
            Y +     +   R+ E+ +  +    L  A ++  +     ++AL +  +VW     D 
Sbjct: 5   AYQQAA-TRAENPREMEYRLFGQVTRALMDASQAPADDIATRIDALDWNRKVWSALATDC 63

Query: 63  VSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
              +N LP E++ ++IS+ LWV +    + R K   ++ +I++  ++  GL
Sbjct: 64  ALPENQLPMELRASIISLSLWVGRHSSAVMR-KEEDFEPLIEINRMIMQGL 113


>gi|300024585|ref|YP_003757196.1| flagellar FlaF family protein [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299526406|gb|ADJ24875.1| flagellar FlaF family protein [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 114

 Score =  117 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 43/112 (38%), Positives = 76/112 (67%)

Query: 2   RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQD 61
           +  Y ET+ +S+   R+ E   +++S+S+L  A K+  NS++AV+A+ + +R+W   ++D
Sbjct: 3   KFSYEETLSDSAGRKRENERLAIEQSVSMLRSAEKAGANSREAVDAICFLNRLWSFLLED 62

Query: 62  LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
           LV  +N LP +++ NLISIG+W+LKE + I   KS ++  +IDV S++ +GL
Sbjct: 63  LVKPENALPDDIRANLISIGIWMLKEADAISSGKSKNFAGLIDVSSVIAEGL 114


>gi|115523196|ref|YP_780107.1| flagellar biosynthesis regulatory protein FlaF [Rhodopseudomonas
           palustris BisA53]
 gi|115517143|gb|ABJ05127.1| flagellar FlaF family protein [Rhodopseudomonas palustris BisA53]
          Length = 115

 Score =  117 bits (294), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 44/110 (40%), Positives = 64/110 (58%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
            Y   I++S+ E R RE+  LD  I LL           +  EAL +  ++W  F+QDL 
Sbjct: 5   SYDNMIEDSAHEARAREYQALDHGIDLLKRLQNGDLQPFEQTEALLFMRKLWTFFVQDLS 64

Query: 64  SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
           S  N LP+ ++  LISIGLWV+KE +RIR+ K+    D+I + +I+RD L
Sbjct: 65  SPKNGLPESLRAELISIGLWVIKEADRIRQEKATDIDDLIAINTIIRDSL 114


>gi|254505115|ref|ZP_05117266.1| Flagellar protein FlaF [Labrenzia alexandrii DFL-11]
 gi|222441186|gb|EEE47865.1| Flagellar protein FlaF [Labrenzia alexandrii DFL-11]
          Length = 116

 Score =  117 bits (293), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 47/112 (41%), Positives = 69/112 (61%)

Query: 2   RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQD 61
              Y E +    I+ R  EH  +   I+ L+ AH+    S +AV+ALFYT RVW  F+++
Sbjct: 3   NLSYAEVMDNLCIDDRLNEHKAMCIIIAKLTAAHEKGVRSPEAVDALFYTRRVWGFFMEN 62

Query: 62  LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
           L  + N LP E + NLIS+G+WVLKE E +R+ +   + DII++ SI+RD L
Sbjct: 63  LADDANQLPDETRANLISVGIWVLKEAEALRQWEREDFSDIIEINSIIRDSL 114


>gi|121602017|ref|YP_989380.1| flagellar biosynthesis regulatory protein FlaF [Bartonella
           bacilliformis KC583]
 gi|120614194|gb|ABM44795.1| Flaf protein [Bartonella bacilliformis KC583]
          Length = 122

 Score =  117 bits (293), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 37/109 (33%), Positives = 68/109 (62%)

Query: 5   YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64
           Y + +++ ++  R+RE  + DR I LL  A +  P + +A EA+ +  ++WV+ I+DL  
Sbjct: 6   YEDVMEDDAMSARERERSLFDRCIKLLQDAKEKGPGTYEANEAVQFARKLWVILIEDLGQ 65

Query: 65  EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
            +N LPQ +K +LISIG ++LKE +R+   +   +  ++++   +RDGL
Sbjct: 66  AENALPQTLKASLISIGFFILKEIQRLDEGEIADFDVLVEISESIRDGL 114


>gi|329889088|ref|ZP_08267431.1| protein flaF [Brevundimonas diminuta ATCC 11568]
 gi|328844389|gb|EGF93953.1| protein flaF [Brevundimonas diminuta ATCC 11568]
          Length = 120

 Score =  116 bits (292), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 48/112 (42%), Gaps = 3/112 (2%)

Query: 3   QYYHETIQESSIECRKREHWILDRSISLLSIAHK-SLPNSKQAVEALFYTSRVWVVFIQD 61
           Q Y +T    +   R+ E+ +  +    L  A      +    ++AL +  R+W      
Sbjct: 4   QAY-KTAATRAESPREMEYRLFGQVTRALMHAATLDKSDVAGRMDALDWNRRLWSTLATA 62

Query: 62  LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
                N +PQ ++   IS+ L+V +    + R + + +  +ID+  ++  GL
Sbjct: 63  CSDSANAMPQAMRAQFISLSLFVNRNTSEVMRGE-DDFSTLIDINRMIMQGL 113


>gi|92116893|ref|YP_576622.1| flagellar biosynthesis regulatory protein FlaF [Nitrobacter
           hamburgensis X14]
 gi|91799787|gb|ABE62162.1| flagellar FlaF [Nitrobacter hamburgensis X14]
          Length = 121

 Score =  116 bits (292), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 3/113 (2%)

Query: 3   QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQ-AVEALFYTSRVWVVFIQD 61
           Q Y  T Q SS   R+ E   L ++   L     +     +    AL +  R+W +F+  
Sbjct: 6   QAYARTAQTSS-SPREIEAQALLKAARQLQEIQNNWTGPDKNMHNALLFNRRLWSIFMSA 64

Query: 62  LVSEDNHLPQEVKLNLISIGLWVLKECERI-RRNKSNSYQDIIDVISIVRDGL 113
             S+DN  P EV+ N+ +IG++V+K+   +         + +ID+   +  GL
Sbjct: 65  ADSDDNQQPLEVRQNIANIGVFVMKQTIDMQMNPDPAKLKSLIDINCNLAAGL 117


>gi|75675299|ref|YP_317720.1| flagellar biosynthesis regulatory protein FlaF [Nitrobacter
           winogradskyi Nb-255]
 gi|74420169|gb|ABA04368.1| putative flagellar protein FlaF [Nitrobacter winogradskyi Nb-255]
          Length = 121

 Score =  116 bits (292), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 3/113 (2%)

Query: 3   QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSK-QAVEALFYTSRVWVVFIQD 61
           Q Y  T Q SS   R+ E   L ++   L               +AL +  R+W +F+  
Sbjct: 6   QAYARTAQTSS-SPREIEAQALLKAARQLREVQDKWEGPDNDMHKALLFNRRLWSIFMSA 64

Query: 62  LVSEDNHLPQEVKLNLISIGLWVLKEC-ERIRRNKSNSYQDIIDVISIVRDGL 113
             S+ N  P EV+ N+ +IG++V+K+  +            +ID+   +  GL
Sbjct: 65  ADSDSNPQPLEVRQNIANIGVFVMKQTVDMQLNPDPAKLTALIDINCNLAAGL 117


>gi|222053750|ref|YP_002536112.1| flagellar FlaF family protein [Geobacter sp. FRC-32]
 gi|221563039|gb|ACM19011.1| flagellar FlaF family protein [Geobacter sp. FRC-32]
          Length = 128

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 56/114 (49%), Gaps = 5/114 (4%)

Query: 5   YHETIQESSIECRKREHWILDRSISLLSIAHKSL---PNSKQAVEALFYTSRVWVVFIQD 61
           Y   IQ+ ++  R+ E  +L R+  +L     +       K+  EAL +  ++W  F  +
Sbjct: 9   YAN-IQKEALTGRELEASVLTRAAQMLKHCQDNWNAPDREKKLQEALKFNQKIWSFFQAE 67

Query: 62  LVSEDNHLPQEVKLNLISIGLWVLKECERIRR-NKSNSYQDIIDVISIVRDGLK 114
           L   DN LP++++ +++S+ L+V K    I    +S     +ID+   +  GL+
Sbjct: 68  LSVPDNPLPKKLREDILSLSLFVDKRIFEIIAFPESEKLTIVIDINMNIAAGLR 121


>gi|85715037|ref|ZP_01046022.1| putative flagellar protein FlaF [Nitrobacter sp. Nb-311A]
 gi|85698234|gb|EAQ36106.1| putative flagellar protein FlaF [Nitrobacter sp. Nb-311A]
          Length = 121

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 3/113 (2%)

Query: 3   QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSK-QAVEALFYTSRVWVVFIQD 61
           Q Y  T Q SS   R+ E   L ++   L    +          +AL +  R+W +F+  
Sbjct: 6   QAYARTAQTSS-SPREIEAQALLKAARQLREIQEHWKGPDNDMHKALLFNRRLWSIFMSA 64

Query: 62  LVSEDNHLPQEVKLNLISIGLWVLKEC-ERIRRNKSNSYQDIIDVISIVRDGL 113
             SE N  P EV+ N+ +IG++V+K+  +            +ID+   +  GL
Sbjct: 65  ADSESNPQPLEVRQNIANIGVFVMKQTVDMQLNPDPAKLTALIDINCNLAAGL 117


>gi|27381966|ref|NP_773495.1| flagellar biosynthesis regulatory protein FlaF [Bradyrhizobium
           japonicum USDA 110]
 gi|27355136|dbj|BAC52120.1| fliC [Bradyrhizobium japonicum USDA 110]
          Length = 117

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 39/111 (35%), Positives = 64/111 (57%)

Query: 3   QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDL 62
           + Y   ++ES  + R RE   L   I  L    K   + +  V++L Y  R+W +FI+DL
Sbjct: 7   EAYEAVVEESGYQERGRERQALSLGIDRLERIEKGPFSFEDLVQSLLYVRRLWTIFIEDL 66

Query: 63  VSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
              +N LP +++ ++ISIGLWV+KE +R+R  KS     +I++  ++RD L
Sbjct: 67  SHPENGLPDKLRADIISIGLWVIKEADRLREEKSGDVMQLIEINRLIRDAL 117


>gi|254294686|ref|YP_003060709.1| flagellar FlaF family protein [Hirschia baltica ATCC 49814]
 gi|254043217|gb|ACT60012.1| flagellar FlaF family protein [Hirschia baltica ATCC 49814]
          Length = 134

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 46/112 (41%), Gaps = 3/112 (2%)

Query: 3   QYYHETIQESSIECRKREHWILDRSISLLSIA-HKSLPNSKQAVEALFYTSRVWVVFIQD 61
           Q Y +T    + + R  E  +       L  A         + V++L    +VW     D
Sbjct: 4   QAYQKTA-NRTADPRDVEFRLFAEVTRDLMEATKAEKHEISKVVKSLDKNRQVWNAMAMD 62

Query: 62  LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
                N LP +++  +IS+ L+V +      RN+S   + +ID+   +  GL
Sbjct: 63  CAQPGNALPDDLRAGIISLSLFVNRHTSEASRNRSE-IETLIDINRNIMQGL 113


>gi|260429492|ref|ZP_05783469.1| flagellar biosynthesis regulatory protein FlaF [Citreicella sp.
           SE45]
 gi|260420115|gb|EEX13368.1| flagellar biosynthesis regulatory protein FlaF [Citreicella sp.
           SE45]
          Length = 125

 Score =  114 bits (286), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 3/111 (2%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNS-KQAVEALFYTSRVWVVFIQDL 62
            Y E    S+   R  E+ +  R    +  A ++ P +  Q VEAL+   R+W     D+
Sbjct: 10  AYAENA-TSTRTDRATEYDLFARVTHRIKAAAEAGPKAYPQLVEALYDNRRLWTTLAVDV 68

Query: 63  VSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
               N LPQE++  +  +  +V     ++   K+     +++V + +  GL
Sbjct: 69  ADPSNKLPQELRAQIFYLSEFVQLHTGKVLARKAR-LAPLLEVNAAIMRGL 118


>gi|319403981|emb|CBI77569.1| Flaf protein [Bartonella rochalimae ATCC BAA-1498]
          Length = 122

 Score =  114 bits (285), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 36/109 (33%), Positives = 67/109 (61%)

Query: 5   YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64
           Y + +++ ++  R+RE ++ DR I LL  A    P S +A +A+ +  ++WV+ I+DL  
Sbjct: 6   YEDVMEDDAMSARERERFLFDRCIKLLLAAKAKGPGSCEAKDAVQFARKLWVILIEDLGQ 65

Query: 65  EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
             N LPQ +K +LISIG ++LKE +++   +   +  ++++   +RDGL
Sbjct: 66  AANALPQALKASLISIGFFILKEIQKLDEGEITDFDVLVEISESIRDGL 114


>gi|163794166|ref|ZP_02188139.1| flagellar FlaF family protein [alpha proteobacterium BAL199]
 gi|159180780|gb|EDP65299.1| flagellar FlaF family protein [alpha proteobacterium BAL199]
          Length = 124

 Score =  114 bits (285), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 2/112 (1%)

Query: 4   YYHETIQE-SSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDL 62
            Y  T    ++   R  E+ +L +    L  A   +   ++ + A+    +VW VF+ DL
Sbjct: 6   AYRRTQGAVATQNGRDLEYRLLAQVTGALIKARDGMATLQERLNAILRNEKVWGVFLADL 65

Query: 63  VSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
              DN LPQ++K  + S+ L+V+KE + +    +    D+I +   +  GLK
Sbjct: 66  NHPDNGLPQQLKGGIASLALFVMKETQLVIDTNA-PLDDLILINRQIMAGLK 116


>gi|294679040|ref|YP_003579655.1| flagellar FlaF family protein [Rhodobacter capsulatus SB 1003]
 gi|294477860|gb|ADE87248.1| flagellar FlaF family protein [Rhodobacter capsulatus SB 1003]
          Length = 125

 Score =  114 bits (285), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 45/114 (39%), Gaps = 3/114 (2%)

Query: 2   RQYYHETIQESSIECRKREHWILDRSISLLSIAHK-SLPNSKQAVEALFYTSRVWVVFIQ 60
           +  Y    Q +    R  E+ I  R    L  A      N    V AL+   R+W     
Sbjct: 8   KTAYANPGQPT-RTLRGTEYEIFARVTHRLKQAAGLDKSNFPAVVRALYDNRRLWTTLAV 66

Query: 61  DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           D+   DN LP  ++  +  +  +      ++ + ++ S   +ID+ + +  GL+
Sbjct: 67  DVALPDNELPDTLRARIFYLNQFTQAHSAKVLKGEA-SIDVLIDINTAIMRGLR 119


>gi|149912825|ref|ZP_01901359.1| flagellar protein FlaF, putative [Roseobacter sp. AzwK-3b]
 gi|149813231|gb|EDM73057.1| flagellar protein FlaF, putative [Roseobacter sp. AzwK-3b]
          Length = 124

 Score =  113 bits (284), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 48/104 (46%), Gaps = 1/104 (0%)

Query: 11  ESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLP 70
            ++   R  E+    R    L+ A K+  +  +   AL+   R+W++   D+  + N LP
Sbjct: 16  RATNTPRDTEYDAFARVTRRLTAAAKTPGDVPELAAALYDNRRLWMILASDVALKSNPLP 75

Query: 71  QEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
            ++K  LI +  +      ++   K+ + + +I+V   V  GL+
Sbjct: 76  GDLKARLIYLAEFAEVHGRKVLAGKATA-EPLIEVNRAVMQGLQ 118


>gi|319406997|emb|CBI80634.1| Flaf protein [Bartonella sp. 1-1C]
          Length = 122

 Score =  113 bits (284), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 35/109 (32%), Positives = 67/109 (61%)

Query: 5   YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64
           Y + +++ ++  R+RE ++ DR I LL  A    P + +A +A+ +  ++WV+ I+DL  
Sbjct: 6   YEDVMEDDAMSARERERFLFDRCIKLLLAAKAKGPGTCEAKDAVQFARKLWVILIEDLGQ 65

Query: 65  EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
             N LPQ +K +LISIG ++LKE +++   +   +  ++++   +RDGL
Sbjct: 66  AANALPQALKASLISIGFFILKEIQKLDEGEITDFDVLVEISESIRDGL 114


>gi|319898659|ref|YP_004158752.1| Flaf protein [Bartonella clarridgeiae 73]
 gi|319402623|emb|CBI76168.1| Flaf protein [Bartonella clarridgeiae 73]
          Length = 122

 Score =  113 bits (284), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 36/109 (33%), Positives = 67/109 (61%)

Query: 5   YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64
           Y + +++ ++  R+RE ++ DR I LL  A    P + +A EA+ +  ++WV+ I+DL  
Sbjct: 6   YEDVMEDDAMSARERERFLFDRCIKLLLDAKMKGPGTCEAKEAVQFARKLWVILIEDLGQ 65

Query: 65  EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
             N LPQ +K +LISIG ++LKE +++   +   +  ++++   +RDGL
Sbjct: 66  AANALPQALKASLISIGFFILKEIQKLDEGEITDFDVLVEISESIRDGL 114


>gi|158422274|ref|YP_001523566.1| flagellar biosynthesis regulatory protein FlaF [Azorhizobium
           caulinodans ORS 571]
 gi|158329163|dbj|BAF86648.1| flagellar FlaF protein [Azorhizobium caulinodans ORS 571]
          Length = 115

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 36/113 (31%), Positives = 68/113 (60%)

Query: 2   RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQD 61
           +  Y E +++SS E R RE    DR++ LL  A  +  ++ +   A+ +  R+W + I+D
Sbjct: 3   KFSYAEILEDSSTESRARERDAFDRALELLVSAESAGLDTPECRAAMLFLQRLWGLLIRD 62

Query: 62  LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           L   +N L  E++ +L+SIGLW ++E +R+    S+++  +I++   +RDGL+
Sbjct: 63  LTDANNELAPELRADLVSIGLWNIREADRVLEQSSSNFSGLININRTIRDGLQ 115


>gi|163738068|ref|ZP_02145484.1| flagellar protein FlaF, putative [Phaeobacter gallaeciensis BS107]
 gi|161388684|gb|EDQ13037.1| flagellar protein FlaF, putative [Phaeobacter gallaeciensis BS107]
          Length = 123

 Score =  113 bits (283), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 49/103 (47%), Gaps = 2/103 (1%)

Query: 13  SIECRKREHWILDRSISLLSIAHKSL-PNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQ 71
           +   +  E+ ++ R    +  A +   P   +   AL    ++W +F  ++ S  N LP 
Sbjct: 18  TRTAKNLEYEVIARVTRRMVAAAQKGKPGFTELAAALTDNRKLWSIFSVEVASPGNPLPD 77

Query: 72  EVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           E+K  L+S+G +  +   ++   K+   + ++++ + +  GL+
Sbjct: 78  ELKAQLLSLGEFTHQHTSKVLARKA-DVRLLVEINTAIMRGLR 119


>gi|322421644|ref|YP_004200867.1| flagellar FlaF family protein [Geobacter sp. M18]
 gi|320128031|gb|ADW15591.1| flagellar FlaF family protein [Geobacter sp. M18]
          Length = 131

 Score =  113 bits (283), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 53/110 (48%), Gaps = 4/110 (3%)

Query: 9   IQESSIECRKREHWILDRSISLLSIAHKSLPNSK---QAVEALFYTSRVWVVFIQDLVSE 65
           IQ+ S+  R+ E  +L ++  +L    +S        + ++A+ Y  +VW  F  +L   
Sbjct: 13  IQKESMSGRELEASVLTKAGLMLKAVQESWDAPDRETKMLDAIKYNQKVWSFFQAELTEP 72

Query: 66  DNHLPQEVKLNLISIGLWVLKECERIRR-NKSNSYQDIIDVISIVRDGLK 114
            + +P++++ +L+++ L+V K    +           +ID+   +  GL+
Sbjct: 73  GHPMPKKLREDLLNLSLFVDKRFFEVMAFPTPEKLSIVIDINFNIAAGLR 122


>gi|209963551|ref|YP_002296466.1| flagellar protein FlaF, putative [Rhodospirillum centenum SW]
 gi|209957017|gb|ACI97653.1| flagellar protein FlaF, putative [Rhodospirillum centenum SW]
          Length = 124

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 3/110 (2%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
            Y ++++++    R+ EH +  +  + L +  +        + A+    R+W   + DL 
Sbjct: 10  AYRQSMRDTV-SPRQLEHRVFSQVTAELEVCTRQPDAF-ATIRAVDRNRRLWGALVTDLA 67

Query: 64  SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
             DN LP  +K  LIS+GLWV +    +   +      +I+V   V  GL
Sbjct: 68  QPDNLLPDALKAGLISLGLWVNRYSSEVLT-EGRPLNPLIEVNRTVMQGL 116


>gi|115523546|ref|YP_780457.1| flagellar biosynthesis regulatory protein FlaF [Rhodopseudomonas
           palustris BisA53]
 gi|115517493|gb|ABJ05477.1| flagellar FlaF family protein [Rhodopseudomonas palustris BisA53]
          Length = 121

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 51/113 (45%), Gaps = 3/113 (2%)

Query: 3   QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSK-QAVEALFYTSRVWVVFIQD 61
           Q Y  T Q+     R  E   L ++   L     + P       EAL +  ++W +F+ D
Sbjct: 6   QAYARTAQK-VATPRDIEAQALLKAARKLQDVMATWPEGDVDFNEALMFNRKLWSLFVSD 64

Query: 62  LVSEDNHLPQEVKLNLISIGLWVLKECER-IRRNKSNSYQDIIDVISIVRDGL 113
            + ++N    E++ N+ +IG++VL +      + +    Q +ID+   +  GL
Sbjct: 65  ALRDENPESIEIRQNIANIGIFVLTQSAALALKPEVERLQALIDINRNIAAGL 117


>gi|254500444|ref|ZP_05112595.1| Flagellar protein FlaF [Labrenzia alexandrii DFL-11]
 gi|222436515|gb|EEE43194.1| Flagellar protein FlaF [Labrenzia alexandrii DFL-11]
          Length = 125

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 56/115 (48%), Gaps = 3/115 (2%)

Query: 3   QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNS--KQAVEALFYTSRVWVVFIQ 60
           Q Y +T Q + +  R+ E  +L ++ + L +      +    +  +AL Y  ++W V + 
Sbjct: 7   QAYQKTSQAAPVSPRELEATLLMKAAARLQLIKDEWDDLSLAEVDDALIYNRKLWTVLVT 66

Query: 61  DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRN-KSNSYQDIIDVISIVRDGLK 114
              SE++ LP E+K N+ S+G++V K+   +           +I +   + +GL+
Sbjct: 67  SATSEESSLPLEIKNNIGSLGVFVFKQTMTVITTQDPEKLGALISINRTIAEGLR 121


>gi|254418530|ref|ZP_05032254.1| Flagellar protein FlaF [Brevundimonas sp. BAL3]
 gi|196184707|gb|EDX79683.1| Flagellar protein FlaF [Brevundimonas sp. BAL3]
          Length = 121

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 48/112 (42%), Gaps = 3/112 (2%)

Query: 3   QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQ-AVEALFYTSRVWVVFIQD 61
           Q Y +     +   R  E+ +  +    L  A           ++AL +  R+W     D
Sbjct: 4   QAY-KAATSRAETPRDLEYRLFGQVTRALVHASTVDERDLATRIDALDWNRRLWSTLASD 62

Query: 62  LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
                N LP  ++  +IS+ L++ +    + R +  ++QD+I++  ++  GL
Sbjct: 63  CGDPANVLPASLRAQIISLSLFINRHSSAVMRGE-ETFQDLIEINRMMMQGL 113


>gi|319405424|emb|CBI79043.1| Flaf protein [Bartonella sp. AR 15-3]
          Length = 122

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 35/109 (32%), Positives = 67/109 (61%)

Query: 5   YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64
           Y + +++ ++  R+RE ++ DR I LL  A    P + +A +A+ +  ++WV+ I+DL  
Sbjct: 6   YEDIMEDDAMSARERERFLFDRCIKLLLAAKAKGPGTCEAKDAVQFARKLWVILIEDLGQ 65

Query: 65  EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
             N LPQ +K +LISIG ++LKE +++   +   +  ++++   +RDGL
Sbjct: 66  AANALPQALKASLISIGFFILKEIQKLDEGEITDFDVLVEISESIRDGL 114


>gi|323136998|ref|ZP_08072078.1| flagellar FlaF family protein [Methylocystis sp. ATCC 49242]
 gi|322397759|gb|EFY00281.1| flagellar FlaF family protein [Methylocystis sp. ATCC 49242]
          Length = 115

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 39/112 (34%), Positives = 67/112 (59%)

Query: 2   RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQD 61
           +Q Y E   ES    R +E   L+ +I  L++A    P + +A EA  Y  R+W +F++D
Sbjct: 3   QQRYAEIASESGKNARAKEREALEIAIKKLAVAKTRGPLTPEAFEATNYLRRLWAIFMED 62

Query: 62  LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
           L +++N LP+ ++ +LISIGLW+ +E + I    S ++  +I+V  ++ DGL
Sbjct: 63  LSNDENGLPESLRASLISIGLWIRREADLIDTGGSVNFDGLIEVNQLIADGL 114


>gi|253702413|ref|YP_003023602.1| flagellar biosynthesis regulatory protein FlaF [Geobacter sp. M21]
 gi|251777263|gb|ACT19844.1| flagellar FlaF family protein [Geobacter sp. M21]
          Length = 129

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 52/110 (47%), Gaps = 4/110 (3%)

Query: 9   IQESSIECRKREHWILDRSISLLSIAHKSLP---NSKQAVEALFYTSRVWVVFIQDLVSE 65
           IQ+ S+  R+ E  +L ++  +L     +        + +EA+ Y  +VW  F  +L   
Sbjct: 13  IQKESMSGRELEASVLTKAGLMLKAVQDNWDAPDREAKMLEAIKYNQKVWSFFQAELSEP 72

Query: 66  DNHLPQEVKLNLISIGLWVLKECERIRR-NKSNSYQDIIDVISIVRDGLK 114
            + +P++++ +L+++ L+V K    +           +ID+   +  GL+
Sbjct: 73  GHPMPKKLREDLLNLSLFVDKRFFEVMAFPSPEKLGIVIDINFNIAAGLR 122


>gi|85706200|ref|ZP_01037295.1| flagellar protein FlaF, putative [Roseovarius sp. 217]
 gi|85669364|gb|EAQ24230.1| flagellar protein FlaF, putative [Roseovarius sp. 217]
          Length = 124

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 43/111 (38%), Gaps = 3/111 (2%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLSIAHKSL-PNSKQAVEALFYTSRVWVVFIQDL 62
            Y    Q +    R  E+    R    L +A      +      AL    R+W +   D+
Sbjct: 10  AYRNQAQ-TIRTERGLEYDAFARITHRLGLAAAKGREDIHNLAAALHDNRRLWTILATDV 68

Query: 63  VSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
              DN LP+E++  ++ +  +       +    + S Q +ID+ + +  GL
Sbjct: 69  ADPDNPLPKELRARIVYLAQFSHHHSTMVLNGDA-SIQPLIDINTAMMRGL 118


>gi|120266|sp|P21295|FLAF_CAUCR RecName: Full=Protein flaF
 gi|40421|emb|CAA33231.1| unnamed protein product [Caulobacter crescentus CB15]
 gi|13422828|gb|AAK23440.1| flaF protein [Caulobacter crescentus CB15]
          Length = 102

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 47/96 (48%), Gaps = 2/96 (2%)

Query: 19  REHWILDRSISLLSIAHKSLPNSKQ-AVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNL 77
            E+ +  +    L  A ++  +     ++AL +  +VW     D    +N LP E++ ++
Sbjct: 1   MEYRLFGQVTRALMDASQAPADDIATRIDALDWNRKVWSALATDCALPENQLPMELRASI 60

Query: 78  ISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
           IS+ LWV +    + R K   ++ +I++  ++  GL
Sbjct: 61  ISLSLWVGRHSSAVMR-KEEDFEPLIEINRMIMQGL 95


>gi|39936974|ref|NP_949250.1| flagellar biosynthesis regulatory protein FlaF [Rhodopseudomonas
           palustris CGA009]
 gi|192292802|ref|YP_001993407.1| flagellar biosynthesis regulatory protein FlaF [Rhodopseudomonas
           palustris TIE-1]
 gi|39650831|emb|CAE29354.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009]
 gi|192286551|gb|ACF02932.1| flagellar FlaF family protein [Rhodopseudomonas palustris TIE-1]
          Length = 122

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 52/114 (45%), Gaps = 4/114 (3%)

Query: 3   QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQ--AVEALFYTSRVWVVFIQ 60
           Q Y  T Q +    R+ E   L ++   L     +          EAL +  ++W +F+ 
Sbjct: 6   QAYARTAQRT-ASPREIEAQALLKAAKQLQDVVTNWEEKGAIGLQEALLFNRKLWSIFVT 64

Query: 61  DLVSEDNHLPQEVKLNLISIGLWVLKECERI-RRNKSNSYQDIIDVISIVRDGL 113
           + + +DN    E++ N+ +IG++V+ +   +  + +    Q +ID+   +  GL
Sbjct: 65  EAMRDDNPQSIEIRQNIANIGVFVMSQSSALQIKPEVERLQALIDINRNIAAGL 118


>gi|197120104|ref|YP_002140531.1| flagellar biosynthesis regulatory protein FlaF [Geobacter
           bemidjiensis Bem]
 gi|197089464|gb|ACH40735.1| flagellar biogenesis regulator FlaF [Geobacter bemidjiensis Bem]
          Length = 129

 Score =  110 bits (276), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 53/110 (48%), Gaps = 4/110 (3%)

Query: 9   IQESSIECRKREHWILDRSISLLSIAHKSLP---NSKQAVEALFYTSRVWVVFIQDLVSE 65
           IQ+ S+  R+ E  +L ++  +L     +        + +EA+ Y  +VW  F  +L   
Sbjct: 13  IQKESMSGRELEASVLTKAGLMLKAVQDNWDAPDREAKMLEAIKYNQKVWSFFQAELSEP 72

Query: 66  DNHLPQEVKLNLISIGLWVLKECERIRR-NKSNSYQDIIDVISIVRDGLK 114
            + +P++++ +L+++ L+V K    +     +     ++D+   +  GL+
Sbjct: 73  GHPMPKKLREDLLNLSLFVDKRFFEVMAFPSAEKLGIVVDINFNIAAGLR 122


>gi|99082813|ref|YP_614967.1| flagellar biosynthesis regulatory protein FlaF [Ruegeria sp.
           TM1040]
 gi|99039093|gb|ABF65705.1| FlaF protein [Ruegeria sp. TM1040]
          Length = 123

 Score =  110 bits (275), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 48/103 (46%), Gaps = 2/103 (1%)

Query: 13  SIECRKREHWILDRSISLLSIAHKSLPN-SKQAVEALFYTSRVWVVFIQDLVSEDNHLPQ 71
           +   R  E+ IL R    + +A     +  K  V A+    ++W +F  DL  E N LP 
Sbjct: 18  TRTARNTEYEILARITHRMIVADSKGSDGFKDLVAAVSDNRKLWTLFTSDLAKEGNKLPT 77

Query: 72  EVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           E+K  L  +  +  +   ++   K+ S Q ++++ + +  GL+
Sbjct: 78  ELKQRLFHLARFTREHTSKVLARKA-SVQPLVEINTAIMRGLR 119


>gi|86750907|ref|YP_487403.1| flagellar biosynthesis regulatory protein FlaF [Rhodopseudomonas
           palustris HaA2]
 gi|86573935|gb|ABD08492.1| Flagellar FlaF [Rhodopseudomonas palustris HaA2]
          Length = 122

 Score =  109 bits (274), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 49/114 (42%), Gaps = 4/114 (3%)

Query: 3   QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQ--AVEALFYTSRVWVVFIQ 60
           Q Y  T Q +    R+ E   L ++   L     S           AL +  ++W +F+ 
Sbjct: 6   QAYARTAQRT-ASPREIEAQALLKAARQLQDVVTSWDERGAIGLDAALMFNRKLWSIFVS 64

Query: 61  DLVSEDNHLPQEVKLNLISIGLWVLKECERI-RRNKSNSYQDIIDVISIVRDGL 113
           D + +DN    E++ N+ +IG++VL +   +    +      +I++   +  GL
Sbjct: 65  DAMRDDNPQTLEIRQNIANIGVFVLSQSTALQMSPQVEPLNALIEINRNIAAGL 118


>gi|90422627|ref|YP_530997.1| flagellar biosynthesis regulatory protein FlaF [Rhodopseudomonas
           palustris BisB18]
 gi|90104641|gb|ABD86678.1| flagellar FlaF [Rhodopseudomonas palustris BisB18]
          Length = 115

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 44/110 (40%), Positives = 62/110 (56%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
            Y   I++S  E R RE   L   I LL+        S   VEAL Y  R+W  F+ DL 
Sbjct: 5   SYDTVIEDSGQEARARERLALSHGIDLLTRLQSGDLRSPDDVEALLYIRRLWTFFVLDLS 64

Query: 64  SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
           S  N LP++++ +LISIG WV+KE +RIR+ K+    ++I V  ++RD L
Sbjct: 65  SPRNGLPEKLRADLISIGFWVIKEADRIRQEKATDIAELIAVNVVIRDSL 114


>gi|259418039|ref|ZP_05741958.1| flagellar biosynthesis regulatory protein FlaF [Silicibacter sp.
           TrichCH4B]
 gi|259346945|gb|EEW58759.1| flagellar biosynthesis regulatory protein FlaF [Silicibacter sp.
           TrichCH4B]
          Length = 123

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 2/103 (1%)

Query: 13  SIECRKREHWILDRSISLLSIAHKSLPN-SKQAVEALFYTSRVWVVFIQDLVSEDNHLPQ 71
           +   R  E+ IL R    + +A+    +  K  V A+    ++W +F  DL  + N LP 
Sbjct: 18  TRTARNTEYEILARITHRMIVANGKGSDGFKDLVAAVSDNRKLWTLFTSDLAKDGNKLPD 77

Query: 72  EVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           E+K  L  +  +  +   ++   K+ S Q ++++ + +  GL+
Sbjct: 78  ELKQRLFHLARFTREHSSKVLARKA-SVQPLVEINTAIMRGLR 119


>gi|316932810|ref|YP_004107792.1| flagellar FlaF family protein [Rhodopseudomonas palustris DX-1]
 gi|315600524|gb|ADU43059.1| flagellar FlaF family protein [Rhodopseudomonas palustris DX-1]
          Length = 122

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 52/114 (45%), Gaps = 4/114 (3%)

Query: 3   QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQ--AVEALFYTSRVWVVFIQ 60
           Q Y  T Q +    R+ E   L ++   L     +          EAL +  ++W +F+ 
Sbjct: 6   QAYARTAQRT-ASPREIEAQALLKAAKQLQDVVTNWDEKGAIGLQEALMFNRKLWSIFVS 64

Query: 61  DLVSEDNHLPQEVKLNLISIGLWVLKECERI-RRNKSNSYQDIIDVISIVRDGL 113
           + + +DN    E++ N+ +IG++VL +   +  + +    Q +ID+   +  GL
Sbjct: 65  EAMRDDNPQSIEIRQNIANIGVFVLSQSSALQIKPEVERLQALIDINRNIAAGL 118


>gi|220921350|ref|YP_002496651.1| flagellar FlaF family protein [Methylobacterium nodulans ORS 2060]
 gi|219945956|gb|ACL56348.1| flagellar FlaF family protein [Methylobacterium nodulans ORS 2060]
          Length = 121

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 46/114 (40%), Gaps = 3/114 (2%)

Query: 3   QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQ-AVEALFYTSRVWVVFIQD 61
             Y +  Q  ++  R+ E  +L ++ + L     +    +    EAL +  +VW +    
Sbjct: 6   HAYAKVSQ-VALTPREAEAAVLIKAAARLQAVQDNWAEQQAGLNEALTFNQKVWTLLSTA 64

Query: 62  LVSEDNHLPQEVKLNLISIGLWVLKEC-ERIRRNKSNSYQDIIDVISIVRDGLK 114
               D  LP E+K ++  +G +V     + +    +     +I +   +  GL+
Sbjct: 65  ATEPDAPLPPELKQSMARLGAFVFTRTFDAMVEPAAEKLTALIRINREIASGLR 118


>gi|91976151|ref|YP_568810.1| flagellar biosynthesis regulatory protein FlaF [Rhodopseudomonas
           palustris BisB5]
 gi|91682607|gb|ABE38909.1| flagellar FlaF [Rhodopseudomonas palustris BisB5]
          Length = 122

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 52/114 (45%), Gaps = 4/114 (3%)

Query: 3   QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQ--AVEALFYTSRVWVVFIQ 60
           Q Y  T Q +    R+ E   L ++   L     +          EAL +  ++W +F+ 
Sbjct: 6   QAYARTAQRT-ASPREIEAQALLKAARQLQDIVTNWSERGAIGLNEALMFNRKLWSIFVS 64

Query: 61  DLVSEDNHLPQEVKLNLISIGLWVLKECERI-RRNKSNSYQDIIDVISIVRDGL 113
           D + +DN    E++ N+ +IG++VL +   +  + +    + +I++   +  GL
Sbjct: 65  DAMRDDNPQSIEIRQNIANIGVFVLSQSAALQMKAEVEPLKALIEINRNIAAGL 118


>gi|254475812|ref|ZP_05089198.1| flagellar protein FlaF, putative [Ruegeria sp. R11]
 gi|214030055|gb|EEB70890.1| flagellar protein FlaF, putative [Ruegeria sp. R11]
          Length = 123

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 52/103 (50%), Gaps = 2/103 (1%)

Query: 13  SIECRKREHWILDRSISLLSIAHKSL-PNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQ 71
           +   +  E+ ++ R    +  A +   P  K+ VEAL    ++W +F  ++ + +N LP+
Sbjct: 18  TRTAKNLEYEVIARITRRMVAAAQKGRPGFKELVEALKDNRKLWSIFADEVANPENPLPE 77

Query: 72  EVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           ++K  L+ +  +  +   ++   K+   + ++++ + +  GL+
Sbjct: 78  DLKSQLLYLREFTNQHTSKVMARKA-DVRMLVEINTAIMRGLR 119


>gi|118581735|ref|YP_902985.1| flagellar biosynthesis regulatory protein FlaF [Pelobacter
           propionicus DSM 2379]
 gi|118504445|gb|ABL00928.1| flagellar FlaF family protein [Pelobacter propionicus DSM 2379]
          Length = 127

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 51/118 (43%), Gaps = 6/118 (5%)

Query: 2   RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSL---PNSKQAVEALFYTSRVWVVF 58
           R  Y +   +  +  R+ E  +L ++   L    +       +    EA+ Y  +VW  F
Sbjct: 5   RTAYEQ-QSKQFMSPRELEASVLTKAGLKLKQCQEKWNTPERNALLDEAIRYNQKVWSFF 63

Query: 59  IQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNK--SNSYQDIIDVISIVRDGLK 114
             +L   DN LPQ+++ +++++ L++ K    +            +ID+   +  GL+
Sbjct: 64  QSELSMPDNPLPQKLREDILNLSLFIDKRLFEVLAFPNAPERLTIVIDINFNIAAGLR 121


>gi|149203154|ref|ZP_01880125.1| flagellar protein FlaF, putative [Roseovarius sp. TM1035]
 gi|149143700|gb|EDM31736.1| flagellar protein FlaF, putative [Roseovarius sp. TM1035]
          Length = 125

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 2/114 (1%)

Query: 1   MRQYYHETIQESSIECRKREHWILDRSISLLS-IAHKSLPNSKQAVEALFYTSRVWVVFI 59
           + Q  +     S    R  E+    R    L   A +   +      AL    R+W +  
Sbjct: 6   LAQSAYRDQSRSVRTDRGLEYDAFARITQRLVHAAGQDPRDIASLAVALHDNRRLWTILA 65

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
            D+    N LPQ ++  ++ +  +       +    + S Q +ID+ + +  GL
Sbjct: 66  TDVADPQNPLPQSLRAQVVYLAQFCHHHSSAVLNTNA-SLQPLIDINTAIMRGL 118


>gi|189426400|ref|YP_001953577.1| flagellar biosynthesis regulatory protein FlaF [Geobacter lovleyi
           SZ]
 gi|189422659|gb|ACD97057.1| flagellar FlaF family protein [Geobacter lovleyi SZ]
          Length = 125

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 54/110 (49%), Gaps = 4/110 (3%)

Query: 9   IQESSIECRKREHWILDRSISLLSIAHKSL---PNSKQAVEALFYTSRVWVVFIQDLVSE 65
           +Q+ ++  R+ E  +L R+  +L    ++       ++ +EA+ +  +VW  F  +L   
Sbjct: 12  MQKETLSGRELEASVLTRAGLMLKQVQENWAAPDRDEKLLEAIKFNQKVWSFFQAELSDP 71

Query: 66  DNHLPQEVKLNLISIGLWVLKECERIR-RNKSNSYQDIIDVISIVRDGLK 114
           +N LP  +K +++++ L++ K    +      +    ++D+   +  GL+
Sbjct: 72  ENPLPTALKQDILNLSLFIDKRLFEVMADPDKDKLTIVVDIDFNIAAGLR 121


>gi|254509559|ref|ZP_05121626.1| flagellar FlaF family protein [Rhodobacteraceae bacterium KLH11]
 gi|221533270|gb|EEE36258.1| flagellar FlaF family protein [Rhodobacteraceae bacterium KLH11]
          Length = 124

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 44/112 (39%), Gaps = 3/112 (2%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLSIAHK-SLPNSKQAVEALFYTSRVWVVFIQDL 62
            Y ++   +    R  E+  + +    L  A      +    V+AL    R+W V    +
Sbjct: 10  AYAQSAVPT-RTPRDTEYEAISKITHRLKAAAARKGTDFGGFVQALHENRRLWNVLATGV 68

Query: 63  VSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
              +N LP  ++  +  +  +      ++  NK+   + ++++   V  GL+
Sbjct: 69  ADTENALPSALRARIFYLAEFTEHHSSQVLGNKA-GVEPLLEINMAVLRGLR 119


>gi|126738587|ref|ZP_01754292.1| flagellar protein FlaF, putative [Roseobacter sp. SK209-2-6]
 gi|126720386|gb|EBA17092.1| flagellar protein FlaF, putative [Roseobacter sp. SK209-2-6]
          Length = 128

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 51/108 (47%), Gaps = 7/108 (6%)

Query: 13  SIECRKREHWILDRSISLLSIA------HKSLPNSKQAVEALFYTSRVWVVFIQDLVSED 66
           +   +  E+ ++ R+   L  A             K    AL    ++W +F  DL++++
Sbjct: 18  TRTTKDNEYEVVARATHKLLAAHKVANAKSGPEGFKVLASALHTNRKMWNIFEVDLLAKE 77

Query: 67  NHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           N LPQEVK NL+ +  +  +   ++   K+   + ++++ + +  GL+
Sbjct: 78  NQLPQEVKTNLLYLAEFTRQHTSKVLSRKA-GIKPLVEINTAIMRGLR 124


>gi|144897700|emb|CAM74564.1| Flagellar FlaF [Magnetospirillum gryphiswaldense MSR-1]
          Length = 145

 Score =  107 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 52/113 (46%), Gaps = 4/113 (3%)

Query: 5   YHETIQES---SIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQD 61
           Y +T   S       R+ E W L  +   +S+A K    ++  + A+    R+W +F  +
Sbjct: 6   YGQTPYNSVPQPGNPRQTEAWALTEAARRMSLAQKEGVATEDLLVAVRLNWRLWTIFQAE 65

Query: 62  LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNK-SNSYQDIIDVISIVRDGL 113
           L  E++ LP +++++++S+  ++ K    I           +I++   +  GL
Sbjct: 66  LSGEESALPDQMRMDMLSLCNFIDKRSVDIIAEPLPEKLDVLININRQIAAGL 118


>gi|254465480|ref|ZP_05078891.1| flagellar protein FlaF, putative [Rhodobacterales bacterium Y4I]
 gi|206686388|gb|EDZ46870.1| flagellar protein FlaF, putative [Rhodobacterales bacterium Y4I]
          Length = 123

 Score =  107 bits (268), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 51/112 (45%), Gaps = 3/112 (2%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPN-SKQAVEALFYTSRVWVVFIQDL 62
            Y    +  +   +  E+ ++ R    L  A +   +   +  +AL    ++W +F  DL
Sbjct: 10  AYS-AAKTPTRTAKNFEYEVVTRVTRRLITAAQKGSDGFNELAQALNDNRKLWSIFTADL 68

Query: 63  VSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
             + N LP  +K NL  +  +  +   ++ + K+ + + ++++ + +  GL+
Sbjct: 69  AMKSNPLPDNLKQNLFELAEFTRQHTSKVLQRKA-NVRPLVEINTAILRGLR 119


>gi|12330683|gb|AAG52880.1| FlaF [Brucella abortus]
          Length = 104

 Score =  107 bits (267), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 39/99 (39%), Positives = 66/99 (66%)

Query: 5   YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64
           Y + + +     ++RE  + DRSI++L  A  +   S++ ++A ++TS++W   I DL S
Sbjct: 6   YEDVMNDDMASAKERERMLFDRSIAMLEAARANGAESREGIDAAYFTSKLWTTIIDDLGS 65

Query: 65  EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDII 103
           E+N LP+E++  +ISIG++VLKE ERIR+ +SN Y  +I
Sbjct: 66  EENALPKELRAAIISIGIFVLKEIERIRQGESNDYATLI 104


>gi|110677571|ref|YP_680578.1| flagellar biosynthesis regulatory protein FlaF [Roseobacter
           denitrificans OCh 114]
 gi|109453687|gb|ABG29892.1| flagellar protein, putative [Roseobacter denitrificans OCh 114]
          Length = 123

 Score =  107 bits (267), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 50/111 (45%), Gaps = 3/111 (2%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
            Y  T Q      R  E+ ++ R    +  A +   +     EAL   +++W     D+ 
Sbjct: 10  AYAPT-QAPIKTARSTEYEVIARISHRMKRAMQQ-DDFPALAEALHENNKLWTTLAIDVG 67

Query: 64  SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           + DN LP E++  ++ +  +  +   ++ R K+ +   ++++ + +  GLK
Sbjct: 68  NPDNLLPDELRARIVYLADFTRQHSHKVMR-KTETAVPLLEINAAILKGLK 117


>gi|114798597|ref|YP_758996.1| putative flagellar biosynthesis regulatory protein [Hyphomonas
           neptunium ATCC 15444]
 gi|114738771|gb|ABI76896.1| putative flagellar biosynthesis regulatory protein [Hyphomonas
           neptunium ATCC 15444]
          Length = 128

 Score =  106 bits (266), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 3/113 (2%)

Query: 2   RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAV-EALFYTSRVWVVFIQ 60
            + Y +  Q +    R  E+ + ++    L   H     +  A  +A++   ++W +   
Sbjct: 6   YKAYGQVTQRT-ATGRALEYAVFEQITRDLQSVHDDGGANTGAWGDAIYRNLQLWTIIAT 64

Query: 61  DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
           DL+S +N LP E K  LIS+  +V +   +I        +DII+V   +  GL
Sbjct: 65  DLLSAENALPDETKAGLISLSEFVRRTSMKILSGT-EGLEDIIEVNRTIMAGL 116


>gi|209884515|ref|YP_002288372.1| flagellar FlaF [Oligotropha carboxidovorans OM5]
 gi|209872711|gb|ACI92507.1| flagellar FlaF [Oligotropha carboxidovorans OM5]
          Length = 121

 Score =  106 bits (266), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 48/112 (42%), Gaps = 3/112 (2%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSK-QAVEALFYTSRVWVVFIQDL 62
            Y    Q ++   R+ E   L ++   L     +   +      AL +  ++W + +  +
Sbjct: 7   AYARVAQ-TTSSPREIEAQALLKAARQLQDVMSNWGKADVDVSGALLFNRKLWSILLSAV 65

Query: 63  VSEDNHLPQEVKLNLISIGLWVLKECERI-RRNKSNSYQDIIDVISIVRDGL 113
            S+++    E++ N+ +IG +V+ +   +    K    + +I++   +  GL
Sbjct: 66  TSDESPQSIEIRQNIANIGTFVMTQTAEMQIAPKPELLKPLIEINCNLAAGL 117


>gi|15964435|ref|NP_384788.1| flagellar biosynthesis regulatory protein FlaF [Sinorhizobium
           meliloti 1021]
 gi|307318932|ref|ZP_07598363.1| flagellar FlaF family protein [Sinorhizobium meliloti AK83]
 gi|10998531|gb|AAG25961.1|AF300968_3 FlaF [Sinorhizobium meliloti]
 gi|15073612|emb|CAC45254.1| Putative flagellin synthesis regulator [Sinorhizobium meliloti
           1021]
 gi|306895346|gb|EFN26101.1| flagellar FlaF family protein [Sinorhizobium meliloti AK83]
          Length = 115

 Score =  106 bits (266), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 50/111 (45%), Positives = 81/111 (72%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
            Y E ++E     + RE  +LDRSI+LL  A +    +++A+EA+++T R+W+ FI+DL 
Sbjct: 5   AYAEIMEEGVAVSKDREKQVLDRSIALLQAAKEKDGYTREAIEAVYFTRRLWIRFIEDLR 64

Query: 64  SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           + DN L +E++ NLISIG+W+L E E+IR+ +S+++Q IID+ +I+RDGLK
Sbjct: 65  APDNQLNEELRANLISIGIWILNETEKIRKRESSNFQGIIDITTIIRDGLK 115


>gi|163794169|ref|ZP_02188142.1| flagellar FlaF family protein [alpha proteobacterium BAL199]
 gi|159180783|gb|EDP65302.1| flagellar FlaF family protein [alpha proteobacterium BAL199]
          Length = 143

 Score =  106 bits (266), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 59/119 (49%), Gaps = 9/119 (7%)

Query: 2   RQYYHETIQESSIECRKREHWILDRSISLLSIAHK-------SLPNSKQAVEALFYTSRV 54
              Y  TI++++   R  E+ +L +  S L  + +             Q ++AL + ++V
Sbjct: 4   YDAYKRTIKQTAA-PRDVEYRLLAQVTSGLMKSKELREGSNRDPRRMAQIMDALNWNNQV 62

Query: 55  WVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
           W  F++D+ +E N LP+E++  ++S+G+WV +E   +   +      +I V   +  GL
Sbjct: 63  WDAFVEDVGTEGNMLPRELRAAIVSLGIWVTRETALVTSGEG-DIDALIAVNRAIMRGL 120


>gi|299131798|ref|ZP_07024993.1| flagellar FlaF family protein [Afipia sp. 1NLS2]
 gi|298591935|gb|EFI52135.1| flagellar FlaF family protein [Afipia sp. 1NLS2]
          Length = 121

 Score =  106 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 47/112 (41%), Gaps = 3/112 (2%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLSIAHKSL-PNSKQAVEALFYTSRVWVVFIQDL 62
            Y    Q ++   R+ E   L ++   L     +          AL +  ++W + +  +
Sbjct: 7   AYARVAQ-TTSSPREIEAQALLKAARQLQDVMSNWGKAGTDVSGALLFNRKLWSILLSAV 65

Query: 63  VSEDNHLPQEVKLNLISIGLWVLKECERI-RRNKSNSYQDIIDVISIVRDGL 113
            S+++    E++ N+ +IG +VL +   +    K    + +I++   +  GL
Sbjct: 66  TSDESPQSIEIRQNIANIGTFVLSQTAEMQIAPKPELLKPLIEINCNLAAGL 117


>gi|304392490|ref|ZP_07374430.1| flagellar biosynthesis regulatory protein FlaF [Ahrensia sp.
           R2A130]
 gi|303295120|gb|EFL89480.1| flagellar biosynthesis regulatory protein FlaF [Ahrensia sp.
           R2A130]
          Length = 117

 Score =  106 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/111 (39%), Positives = 66/111 (59%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
            Y ET   S    R  E  +L +SI LL +A +    SK AVEA+++T+R+W  FI+DL 
Sbjct: 7   GYAETNANSGKAARAGERALLRQSIDLLKLAKEQGTQSKAAVEAVYFTNRLWTAFIEDLG 66

Query: 64  SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
            E+N L   ++ NLISIG+ +L+   RIR     +  +I++V  I+ DGL+
Sbjct: 67  GEENRLEPTLRANLISIGISILRSTGRIREGDETAIDEIVEVSGIILDGLR 117


>gi|296531759|ref|ZP_06894581.1| possible flaF protein [Roseomonas cervicalis ATCC 49957]
 gi|296267898|gb|EFH13703.1| possible flaF protein [Roseomonas cervicalis ATCC 49957]
          Length = 141

 Score =  106 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/111 (31%), Positives = 49/111 (44%), Gaps = 2/111 (1%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
            Y   I+ +  + R  E+ +L R+ SLL  A +         EA+     VW  F  DL 
Sbjct: 23  AYGSVIRGT-EDPRDIEYRVLARATSLLEAAQRPNAGPSALPEAIHENRMVWTAFAADLA 81

Query: 64  SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +E+N      K  L+S+  WV  E ER+ R    S   + DV   V  GLK
Sbjct: 82  AEENGWDMVTKGRLLSLARWVFAESERVLRG-GRSPHALCDVNRAVMAGLK 131


>gi|150395506|ref|YP_001325973.1| flagellar biosynthesis regulatory protein FlaF [Sinorhizobium
           medicae WSM419]
 gi|150027021|gb|ABR59138.1| flagellar FlaF family protein [Sinorhizobium medicae WSM419]
          Length = 115

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 50/111 (45%), Positives = 81/111 (72%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
            Y E ++E     + RE  +LDRSI+LL  A +    +++A+EA+++T R+W+ FI+DL 
Sbjct: 5   AYAEIMEEGVAVSKDREKQVLDRSIALLQAAKEKNGYTREAIEAVYFTRRLWIRFIEDLR 64

Query: 64  SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           + DN L +E++ NLISIG+W+L E E+IR+ +S+++Q IID+ +I+RDGLK
Sbjct: 65  APDNQLNEELRANLISIGIWILNETEKIRKRESSNFQGIIDITTIIRDGLK 115


>gi|163744337|ref|ZP_02151697.1| flaF protein [Oceanibulbus indolifex HEL-45]
 gi|161381155|gb|EDQ05564.1| flaF protein [Oceanibulbus indolifex HEL-45]
          Length = 134

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 48/121 (39%), Gaps = 13/121 (10%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQ-----------AVEALFYTS 52
            Y  TI+ES    R+ E  IL R    L+   +    ++              +AL+   
Sbjct: 5   AYKRTIRES-ETPRQIERRILSRVTHDLAEKGQGFDATEDKSERLNILSTGLRDALYENQ 63

Query: 53  RVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDG 112
           R W     DL    N +P  +K +LISI LWV +    +   +      ++++   +  G
Sbjct: 64  RFWSALRYDLAEPGNTMPDALKASLISIALWVERHSTALMAGEGR-LAGLVEINGNIAAG 122

Query: 113 L 113
           L
Sbjct: 123 L 123


>gi|114765256|ref|ZP_01444388.1| flaF protein [Pelagibaca bermudensis HTCC2601]
 gi|114542391|gb|EAU45419.1| flaF protein [Roseovarius sp. HTCC2601]
          Length = 145

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 50/121 (41%), Gaps = 13/121 (10%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQ-----------AVEALFYTS 52
            Y +TI+ES    ++ E  +  R    +     +   ++              +A+    
Sbjct: 5   AYKQTIRES-ASPKQIEARVFARITGSMEQHRANWLAARDKFARTAVLAHGLRDAVAENR 63

Query: 53  RVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDG 112
            +W     DL  E+N LP E++ NL+SI +WV + C  +     +    +IDV   +  G
Sbjct: 64  VLWSRLRTDLTDENNQLPAELRANLLSIAMWVDRTCGVVIGG-GDGLPALIDVNQNILGG 122

Query: 113 L 113
           L
Sbjct: 123 L 123


>gi|163733163|ref|ZP_02140607.1| flagellar protein, putative [Roseobacter litoralis Och 149]
 gi|161393698|gb|EDQ18023.1| flagellar protein, putative [Roseobacter litoralis Och 149]
          Length = 123

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 49/111 (44%), Gaps = 3/111 (2%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
            Y  T Q      R  E+ ++ R    +  A +   +     EAL   +++W     D+ 
Sbjct: 10  AYAPT-QAPIKTARSTEYEVIARISHRMKRAMQQ-DDFPALAEALHENNKLWTTLAIDVG 67

Query: 64  SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           + DN LP E++  ++ +  +      ++ R K+ +   ++++ + +  GLK
Sbjct: 68  NPDNLLPDELRARIVYLADFTRLHSHKVMR-KTETAVPLLEINAAILKGLK 117


>gi|227820878|ref|YP_002824848.1| flagellar biosynthesis regulatory protein FlaF [Sinorhizobium
           fredii NGR234]
 gi|227339877|gb|ACP24095.1| predicted flagellar protein FlaF [Sinorhizobium fredii NGR234]
          Length = 115

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 52/111 (46%), Positives = 79/111 (71%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
            Y E ++E     + RE  +L+RSI+LL  A +    S++A+EA++YT RVW+ FI+DL 
Sbjct: 5   AYAEIMEEGVAVSKDREWQVLNRSIALLEAAKQQKGYSREAIEAIYYTRRVWIRFIEDLR 64

Query: 64  SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           + DN L  E++ NLISIG+W+L E E+IR+  S+++Q IID+ +I+RDGLK
Sbjct: 65  APDNQLNDELRANLISIGIWILNETEKIRKRDSSNFQGIIDITTIIRDGLK 115


>gi|27380953|ref|NP_772482.1| flagellar biosynthesis regulatory protein FlaF [Bradyrhizobium
           japonicum USDA 110]
 gi|27354119|dbj|BAC51107.1| bll5842 [Bradyrhizobium japonicum USDA 110]
          Length = 122

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 53/112 (47%), Gaps = 3/112 (2%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQA-VEALFYTSRVWVVFIQDL 62
            Y      ++   R  E   L ++ + L  A  +     +  ++AL +  ++W +F+ + 
Sbjct: 8   AYARVA-TTTASPRDIEAQTLLKAANKLQDAVNNADPLSEQTMQALMFNRKLWTIFLSEA 66

Query: 63  VSEDNHLPQEVKLNLISIGLWVLKECERI-RRNKSNSYQDIIDVISIVRDGL 113
           + ++N  P +V+  + +I ++VL +   +    + + ++ +I++   +  GL
Sbjct: 67  MRDNNPQPIDVRQKIANISVFVLSQTAALQMSPQFDHFRPLIEINRNIAAGL 118


>gi|197104849|ref|YP_002130226.1| Flagellar biosynthesis regulator FlaF [Phenylobacterium zucineum
           HLK1]
 gi|196478269|gb|ACG77797.1| Flagellar biosynthesis regulator FlaF [Phenylobacterium zucineum
           HLK1]
          Length = 104

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 2/96 (2%)

Query: 19  REHWILDRSISLLSIAHK-SLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNL 77
            E+ +  +    L  A K    + K  ++AL +  RVW V   D     N LP+E++ ++
Sbjct: 1   MEYRLFAQVTRALMEAAKLPADDLKGRMDALDWNRRVWSVLGADCQQTGNGLPRELRASI 60

Query: 78  ISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
           IS+ +WV K    + R +    + +I++  ++  GL
Sbjct: 61  ISLSIWVGKHTSLVIRQQEE-IEPLIEINRMIMQGL 95


>gi|307311577|ref|ZP_07591218.1| flagellar FlaF family protein [Sinorhizobium meliloti BL225C]
 gi|306899594|gb|EFN30223.1| flagellar FlaF family protein [Sinorhizobium meliloti BL225C]
          Length = 115

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/111 (44%), Positives = 80/111 (72%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
            Y E ++E     + RE  +LDRSI+LL  A +    +++A+ A+++T R+W+ FI+DL 
Sbjct: 5   AYAEIMEEGVAVSKDREKQVLDRSIALLQAAKEKDGYTREAIAAVYFTRRLWIRFIEDLR 64

Query: 64  SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           + DN L +E++ NLISIG+W+L E E+IR+ +S+++Q IID+ +I+RDGLK
Sbjct: 65  APDNQLNEELRANLISIGIWILNETEKIRKRESSNFQGIIDITTIIRDGLK 115


>gi|188579928|ref|YP_001923373.1| flagellar biosynthesis regulatory protein FlaF [Methylobacterium
           populi BJ001]
 gi|179343426|gb|ACB78838.1| flagellar FlaF family protein [Methylobacterium populi BJ001]
          Length = 116

 Score =  105 bits (262), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 59/114 (51%), Gaps = 1/114 (0%)

Query: 2   RQYYHETIQESSIECRKREHWILDRSISLLS-IAHKSLPNSKQAVEALFYTSRVWVVFIQ 60
           R  Y E ++++    R+RE    DR++ LL     +      +   A+     +W V I 
Sbjct: 3   RLSYSEIMEDAPDLGREREREAFDRALGLLRTAEAQGAGAGAERNSAVGSIQELWNVLIS 62

Query: 61  DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           DL+  +N LP+ ++ +L++IGLW ++E   +      S   +I+V + +RDGL+
Sbjct: 63  DLLDPENGLPEGLRADLVAIGLWNMREAGEVLSTPERSLSALIEVNTSIRDGLR 116


>gi|84502365|ref|ZP_01000501.1| hypothetical protein OB2597_20156 [Oceanicola batsensis HTCC2597]
 gi|84389177|gb|EAQ01974.1| hypothetical protein OB2597_20156 [Oceanicola batsensis HTCC2597]
          Length = 132

 Score =  105 bits (262), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 45/121 (37%), Gaps = 13/121 (10%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLS-----------IAHKSLPNSKQAVEALFYTS 52
            Y  TI+ES    R+ E  +  R    L             A ++   +      L    
Sbjct: 5   AYKRTIRES-ESPRQIERRVFLRVTGELEKKSTPFDKAASRADRADLLAGGLRSHLAENL 63

Query: 53  RVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDG 112
           ++W     DL   +N LP ++K  LIS+ L+V ++        S     ++ +   +  G
Sbjct: 64  KLWSTIKHDLSQPENGLPVQLKAGLISLALFVERQTANCLGG-SAGLGVLVQINQNLISG 122

Query: 113 L 113
           L
Sbjct: 123 L 123


>gi|170751769|ref|YP_001758029.1| flagellar FlaF family protein [Methylobacterium radiotolerans JCM
           2831]
 gi|170658291|gb|ACB27346.1| flagellar FlaF family protein [Methylobacterium radiotolerans JCM
           2831]
          Length = 123

 Score =  104 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 54/114 (47%), Gaps = 4/114 (3%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAV--EALFYTSRVWVVFIQD 61
            Y +T   S++  R+ E  +L ++   L  A + L +       EAL +  RVW +   +
Sbjct: 7   AYAKT-SHSALSPREAESAVLLKAAQKLIGASQGLASGDAGRINEALTFNQRVWTLLTSE 65

Query: 62  LVSEDNHLPQEVKLNLISIGLWVLKEC-ERIRRNKSNSYQDIIDVISIVRDGLK 114
             S+ N LP +VK  +  +G++VL+ C + +          ++ + + +  GL+
Sbjct: 66  ATSDVNPLPADVKQGVGRLGVFVLQSCIDTMIAPTPEKIATLVSINNHIAAGLQ 119


>gi|83944194|ref|ZP_00956650.1| flaF protein [Sulfitobacter sp. EE-36]
 gi|83845061|gb|EAP82942.1| flaF protein [Sulfitobacter sp. EE-36]
          Length = 133

 Score =  104 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 13/121 (10%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQ-----------AVEALFYTS 52
            Y  TI  +  + R+ E  IL    S L    ++   + +             + L+   
Sbjct: 5   AYKRTISHT-EDPRQIERRILASVTSKLENKFEAFDGAAEKSQKLQMLADGLRDTLWENQ 63

Query: 53  RVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDG 112
           RVW+ F  DL  +DN L  +++  LIS+ LWV    + +    S + + +ID+   + DG
Sbjct: 64  RVWLTFKADLAEKDNGLTADLRAALISLALWVENHTKAVLSG-SKNVKPLIDINRSIIDG 122

Query: 113 L 113
           L
Sbjct: 123 L 123


>gi|170739223|ref|YP_001767878.1| flagellar FlaF family protein [Methylobacterium sp. 4-46]
 gi|168193497|gb|ACA15444.1| flagellar FlaF family protein [Methylobacterium sp. 4-46]
          Length = 121

 Score =  104 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 48/113 (42%), Gaps = 3/113 (2%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQ-AVEALFYTSRVWVVFIQDL 62
            Y +  Q +++  R+ E  +L ++ + L     +  + +    EAL +  +VW +     
Sbjct: 7   AYAKVAQ-AALTPREAEAAVLIKAAARLQAIQDNWTDQQAGLNEALTFNQKVWTLLSTAA 65

Query: 63  VSEDNHLPQEVKLNLISIGLWVLKEC-ERIRRNKSNSYQDIIDVISIVRDGLK 114
              D  LP ++K ++  +G +V     + +    +     +I +   +  GL+
Sbjct: 66  TEPDAPLPADLKQSMAQLGAFVFTRTFDAMIEPHAEKLTALIRINRELASGLR 118


>gi|182680454|ref|YP_001834600.1| flagellar biosynthesis regulatory protein FlaF [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|182636337|gb|ACB97111.1| flagellar FlaF family protein [Beijerinckia indica subsp. indica
           ATCC 9039]
          Length = 91

 Score =  104 bits (260), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 61/91 (67%)

Query: 24  LDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLW 83
           +D ++ LL  A     +S   +EAL Y  R+W + ++DL + DN LP+ ++ +L+S+G+W
Sbjct: 1   MDHALDLLENARNKGASSIACIEALSYLCRLWTLLMEDLANPDNDLPEVLRADLLSVGIW 60

Query: 84  VLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +LKE + I++  S++   +I++ +++RDGLK
Sbjct: 61  ILKETDAIQKGTSDNLVGLIEICTLIRDGLK 91


>gi|90423003|ref|YP_531373.1| flagellar biosynthesis regulatory protein FlaF [Rhodopseudomonas
           palustris BisB18]
 gi|90105017|gb|ABD87054.1| flagellar FlaF [Rhodopseudomonas palustris BisB18]
          Length = 121

 Score =  104 bits (260), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 52/113 (46%), Gaps = 3/113 (2%)

Query: 3   QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNS-KQAVEALFYTSRVWVVFIQD 61
           Q Y  T Q+     R  E   L ++   L  A  +   S      AL +  ++W +F+ D
Sbjct: 6   QAYARTAQQ-IASPRDIEAQALLKAARQLQDAVTNWNESDSGLNAALIFNRKLWSIFVSD 64

Query: 62  LVSEDNHLPQEVKLNLISIGLWVLKECERI-RRNKSNSYQDIIDVISIVRDGL 113
            +S+ N     ++ N+ +IG++VL +C  +  + + +    +I++   +  GL
Sbjct: 65  AISDANPEAIAIRQNIANIGIFVLTQCAALQVKPERDRLHALIEINRNIATGL 117


>gi|56698281|ref|YP_168654.1| flagellar biosynthesis regulatory protein FlaF [Ruegeria pomeroyi
           DSS-3]
 gi|56680018|gb|AAV96684.1| flagellar protein FlaF, putative [Ruegeria pomeroyi DSS-3]
          Length = 125

 Score =  104 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 52/114 (45%), Gaps = 3/114 (2%)

Query: 2   RQYYHETIQESSIECRKREHWILDRSISLL-SIAHKSLPNSKQAVEALFYTSRVWVVFIQ 60
           RQ Y       +   R  E+ +L R    + S A +      + VEAL   +R+W V   
Sbjct: 8   RQAYS-AASAPTRTPRNMEYEVLSRITHRMHSAAKRGRAGFGELVEALHENNRLWGVLAA 66

Query: 61  DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           ++   +N LP +++  L  +  +      ++ R +++  + ++++ + V  GL+
Sbjct: 67  NVAEGENALPPDLRARLFYLAEFTQVHTSKVLRREASP-RPLLEINTAVLRGLR 119


>gi|114570513|ref|YP_757193.1| flagellar biosynthesis regulatory protein FlaF [Maricaulis maris
           MCS10]
 gi|114340975|gb|ABI66255.1| flagellar FlaF family protein [Maricaulis maris MCS10]
          Length = 126

 Score =  104 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 3/112 (2%)

Query: 3   QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNS-KQAVEALFYTSRVWVVFIQD 61
           Q Y ++    + + R  E+ +  +    L  A      S +   +A+ +  RVW     D
Sbjct: 4   QAYQKSAAR-AEDPRATEYRLFAQVTRSLMNAKSLPIESLQDRAQAIDWNRRVWSNLALD 62

Query: 62  LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
             S+DN LP+ ++  +IS+ ++V K+     RN   +  D++D+   V  GL
Sbjct: 63  CASQDNKLPEALRAAIISLSIFVSKQGSHAMRNP-EAIDDLVDINRTVMQGL 113


>gi|312115277|ref|YP_004012873.1| flagellar FlaF family protein [Rhodomicrobium vannielii ATCC 17100]
 gi|311220406|gb|ADP71774.1| flagellar FlaF family protein [Rhodomicrobium vannielii ATCC 17100]
          Length = 115

 Score =  103 bits (258), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 46/110 (41%), Positives = 64/110 (58%)

Query: 5   YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64
           Y E +       R  E   + RSI+LL    ++   S +A+EAL YT R+WV FI+ L  
Sbjct: 6   YQEALATDVRMARSTERASILRSINLLQRGAEAGSRSAEAIEALLYTKRLWVFFIEQLGL 65

Query: 65  EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
            DN LP +++ +LISIG+ VL+  E IRR +S  +  IIDV   V +GLK
Sbjct: 66  PDNRLPHKLRADLISIGIAVLRRIEAIRRGESKDFGFIIDVSRSVAEGLK 115


>gi|83955106|ref|ZP_00963762.1| flaF protein [Sulfitobacter sp. NAS-14.1]
 gi|83840435|gb|EAP79608.1| flaF protein [Sulfitobacter sp. NAS-14.1]
          Length = 133

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 13/121 (10%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQ-----------AVEALFYTS 52
            Y  TI  +  + R+ E  IL    S L    ++   + +             + L+   
Sbjct: 5   AYKRTISHT-EDPRQIERRILASVTSKLENKFEAFDGAAEKSQKLQMLADGLRDTLWENQ 63

Query: 53  RVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDG 112
           RVW+ F  DL  +DN L  +++  LIS+ LWV    + +    S + + +ID+   + +G
Sbjct: 64  RVWLTFKADLAEKDNGLTADLRAALISLALWVENHTKAVLSG-SKNVKPLIDINRSIING 122

Query: 113 L 113
           L
Sbjct: 123 L 123


>gi|188580879|ref|YP_001924324.1| flagellar FlaF family protein [Methylobacterium populi BJ001]
 gi|179344377|gb|ACB79789.1| flagellar FlaF family protein [Methylobacterium populi BJ001]
          Length = 124

 Score =  103 bits (257), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 43/112 (38%), Gaps = 2/112 (1%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
            Y +  +  ++  R+ E  +L ++   L      +       EAL +  RVW +      
Sbjct: 7   AYAKVAR-VALSPREAEAAVLLKAAGRLQALGAGVEAGPALNEALGFNQRVWTILASAAT 65

Query: 64  SEDNHLPQEVKLNLISIGLWVLKEC-ERIRRNKSNSYQDIIDVISIVRDGLK 114
              N LP +V+  +  +  +V     + +        + ++ + + +  GL+
Sbjct: 66  DPANPLPVDVRHGMAQLSAYVFHTIMDTMIEPTREKIESLVSLNNHIAAGLQ 117


>gi|126464888|ref|YP_001041864.1| flagellar biosynthesis regulatory protein FlaF [Rhodobacter
           sphaeroides ATCC 17029]
 gi|126106703|gb|ABN79228.1| flagellar FlaF family protein [Rhodobacter sphaeroides ATCC 17029]
          Length = 121

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 51/113 (45%), Gaps = 2/113 (1%)

Query: 2   RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLP-NSKQAVEALFYTSRVWVVFIQ 60
           R  Y    Q S+   R  E+ +L +  +LL    +          +A+    ++W+ F  
Sbjct: 3   RTAYSAASQGSARTPRSTEYALLAKVTALLKETDRHDALAFPALAQAIEQNRKLWLRFAL 62

Query: 61  DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
           D+   DN LP++++  +  +   V +   R+  +++++   ++D+   V  GL
Sbjct: 63  DVAHPDNELPRDLRARIFYLYEIVQQHSARVLAHRADT-GLLVDINRAVMRGL 114


>gi|154252991|ref|YP_001413815.1| flagellar FlaF family protein [Parvibaculum lavamentivorans DS-1]
 gi|154156941|gb|ABS64158.1| flagellar FlaF family protein [Parvibaculum lavamentivorans DS-1]
          Length = 125

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 50/116 (43%), Gaps = 5/116 (4%)

Query: 3   QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPN--SKQAVEALFYTSRVWVVFIQ 60
             Y    + ++ + R+ E  IL R+   L     +  N  +    +AL Y  R+W VF  
Sbjct: 6   DAYANASRMATKDPREFEATILTRAAGQLQRIRDNWTNETASALRDALLYNRRIWTVFAA 65

Query: 61  DLVSEDNHLPQEVKLNLISIGLWVLKECERI---RRNKSNSYQDIIDVISIVRDGL 113
               +++ LP+E+K N+ ++ +++ K    I   R         +I +   +  GL
Sbjct: 66  SAAEKEHPLPREIKQNIANLAIFIFKRTSEIESSREPAPQLLDTLIMINREIAAGL 121


>gi|119384358|ref|YP_915414.1| flagellar FlaF family protein [Paracoccus denitrificans PD1222]
 gi|119374125|gb|ABL69718.1| flagellar FlaF family protein [Paracoccus denitrificans PD1222]
          Length = 121

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 2/98 (2%)

Query: 17  RKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLN 76
           R  E++   +    L  A +S       +EA   ++++W +   +L+  +N LP ++K  
Sbjct: 21  RDNEYFAFSQVTQTLKRACQSGDRYL-MIEAAHSSNQLWTIVATNLMHPENTLPSDIKAG 79

Query: 77  LISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           L+S+  + LK+   +          +I+V   +  GL+
Sbjct: 80  LLSLAFFSLKQGHHVIS-SGVPADPLIEVNMRIMRGLR 116


>gi|288962698|ref|YP_003452992.1| FliL protein [Azospirillum sp. B510]
 gi|288914964|dbj|BAI76448.1| FliL protein [Azospirillum sp. B510]
          Length = 132

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 50/111 (45%), Gaps = 2/111 (1%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
            YH+TI E   + RK E+ +  R    L     +   S    +AL+    +W     DL+
Sbjct: 5   AYHQTIAE-CDDPRKIEYRVFLRITLALEQNRDADWRSAALKDALWRNLELWNALRADLL 63

Query: 64  SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
            + N LP+ ++  L+S+   V +  +R+ R +      ++ +   V  GL+
Sbjct: 64  EDGNALPEALRAGLVSLSFAVNRNTQRVLRGEG-GIDLLLHINRSVMQGLQ 113


>gi|221634510|ref|YP_002523198.1| FlaF protein [Rhodobacter sphaeroides KD131]
 gi|221163383|gb|ACM04345.1| FlaF protein [Rhodobacter sphaeroides KD131]
          Length = 126

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 51/113 (45%), Gaps = 2/113 (1%)

Query: 2   RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLP-NSKQAVEALFYTSRVWVVFIQ 60
           R  Y    Q S+   R  E+ +L +  +LL    +          +A+    ++W+ F  
Sbjct: 8   RTAYSAARQGSARTPRSTEYALLAKVTALLKETDRHDALAFPALAQAIEQNRKLWLRFAL 67

Query: 61  DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
           D+   DN LP++++  +  +   V +   R+  +++++   ++D+   V  GL
Sbjct: 68  DVAHPDNELPRDLRARIFYLYEIVQQHSARVLAHRADT-GLLVDINRAVMRGL 119


>gi|114762155|ref|ZP_01441623.1| flagellar protein FlaF, putative [Pelagibaca bermudensis HTCC2601]
 gi|114545179|gb|EAU48182.1| flagellar protein FlaF, putative [Roseovarius sp. HTCC2601]
          Length = 125

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 49/104 (47%), Gaps = 2/104 (1%)

Query: 11  ESSIECRKREHWILDRSISLLSIAHKSLPNS-KQAVEALFYTSRVWVVFIQDLVSEDNHL 69
            S+   R  E+ +L R    +  A ++ P +  + V AL+   R+W     D+ S +N L
Sbjct: 16  TSTRTDRAIEYDLLARVTHRIKSAAEAGPKAYPRLVRALYDNRRLWTALAVDVASTENAL 75

Query: 70  PQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
           PQE++  +  +  +V     ++   K+     +++V + +  GL
Sbjct: 76  PQELRAQIFYLAEFVQLHTGKVLARKAR-LAPLLEVNAAILRGL 118


>gi|125654645|ref|YP_001033839.1| flagellar biosynthesis regulatory protein FlaF [Rhodobacter
           sphaeroides 2.4.1]
 gi|332561332|ref|ZP_08415647.1| flagellar biosynthesis regulatory protein FlaF [Rhodobacter
           sphaeroides WS8N]
 gi|77386305|gb|ABA81734.1| possible FlaF protein [Rhodobacter sphaeroides 2.4.1]
 gi|332274131|gb|EGJ19448.1| flagellar biosynthesis regulatory protein FlaF [Rhodobacter
           sphaeroides WS8N]
          Length = 121

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 51/113 (45%), Gaps = 2/113 (1%)

Query: 2   RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLP-NSKQAVEALFYTSRVWVVFIQ 60
           R  Y    Q S+   R  E+ +L +  +LL    +          +A+    ++W+ F  
Sbjct: 3   RTAYSAARQGSARTPRSTEYALLAKVTALLKETDRHDALAFPALAQAIEQNRKLWLRFAL 62

Query: 61  DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
           D+   DN LP++++  +  +   V +   R+  +++++   ++D+   V  GL
Sbjct: 63  DVAHPDNELPRDLRARIFYLYEIVQQHSARVLAHRADT-GLLVDINRAVMRGL 114


>gi|254559271|ref|YP_003066366.1| flagellar protein FlaF [Methylobacterium extorquens DM4]
 gi|254266549|emb|CAX22313.1| Flagellar protein FlaF [Methylobacterium extorquens DM4]
          Length = 116

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 34/114 (29%), Positives = 60/114 (52%), Gaps = 1/114 (0%)

Query: 2   RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEA-LFYTSRVWVVFIQ 60
           R  Y E ++++    R+RE    DR++S L  A      +  A  A +     +W V I 
Sbjct: 3   RLSYAEIMEDAPDLGRERERDAFDRALSQLRTAEAQGAAAGPARSAAVGSIQDLWNVLIA 62

Query: 61  DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           DL+  +N LP+ ++ +L++IGLW ++E   +      S   +I+V + +RDGL+
Sbjct: 63  DLLDPENALPESLRADLVAIGLWNMREAGEVLSTPDRSLAALIEVNTSIRDGLQ 116


>gi|163850126|ref|YP_001638169.1| flagellar biosynthesis regulatory protein FlaF [Methylobacterium
           extorquens PA1]
 gi|218528730|ref|YP_002419546.1| flagellar biosynthesis regulatory protein FlaF [Methylobacterium
           chloromethanicum CM4]
 gi|240137260|ref|YP_002961729.1| Flagellar protein FlaF [Methylobacterium extorquens AM1]
 gi|163661731|gb|ABY29098.1| flagellar FlaF family protein [Methylobacterium extorquens PA1]
 gi|218521033|gb|ACK81618.1| flagellar FlaF family protein [Methylobacterium chloromethanicum
           CM4]
 gi|240007226|gb|ACS38452.1| Flagellar protein FlaF [Methylobacterium extorquens AM1]
          Length = 116

 Score =  101 bits (251), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 34/114 (29%), Positives = 60/114 (52%), Gaps = 1/114 (0%)

Query: 2   RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEA-LFYTSRVWVVFIQ 60
           R  Y E ++++    R+RE    DR++S L  A      +  A  A +     +W V I 
Sbjct: 3   RLSYAEIMEDAPDLGRERERDAFDRALSQLRTAEAQGAAAGPARSAAVGSIQDLWNVLIA 62

Query: 61  DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           DL+  +N LP+ ++ +L++IGLW ++E   +      S   +I+V + +RDGL+
Sbjct: 63  DLLDPENALPESLRADLVAIGLWNMREAGEVLSAPDRSLAALIEVNTSIRDGLQ 116


>gi|163742536|ref|ZP_02149922.1| flagellar protein FlaF, putative [Phaeobacter gallaeciensis 2.10]
 gi|161384121|gb|EDQ08504.1| flagellar protein FlaF, putative [Phaeobacter gallaeciensis 2.10]
          Length = 88

 Score =  100 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 41/82 (50%), Gaps = 1/82 (1%)

Query: 33  IAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIR 92
            A K  P   +   AL    ++W +F  ++ S  N LP E+K  L+S+G +  +   ++ 
Sbjct: 4   AAQKGKPGFTELAAALTDNRKLWSIFSVEVASPGNPLPDELKAQLLSLGEFTHQHTSKVL 63

Query: 93  RNKSNSYQDIIDVISIVRDGLK 114
             K+   + ++++ + +  GL+
Sbjct: 64  ARKA-DVRLLVEINTAIMRGLR 84


>gi|159045900|ref|YP_001534694.1| flagellar biosynthesis regulatory protein FlaF [Dinoroseobacter
           shibae DFL 12]
 gi|157913660|gb|ABV95093.1| flagellar biosynthesis regulatory protein FlaF [Dinoroseobacter
           shibae DFL 12]
          Length = 123

 Score = 99.9 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 43/102 (42%), Gaps = 2/102 (1%)

Query: 12  SSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQ 71
           ++   +  E+ +  +  S L  + KS    +   +A+    R+W+    D+  + N+LP 
Sbjct: 17  ATRTEQSIEYELFAKMTSALVQSSKSG-KFEAIAKAVHDNRRLWLALAADVSDDANNLPV 75

Query: 72  EVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
           E++  +  +  +      ++   K      ++++   +  GL
Sbjct: 76  ELRAQVFYLAEFTQHHSSKVLTEKV-PVDPLVEINRSIMSGL 116


>gi|304321142|ref|YP_003854785.1| flagellar protein FlaF [Parvularcula bermudensis HTCC2503]
 gi|303300044|gb|ADM09643.1| flagellar protein FlaF, putative [Parvularcula bermudensis
           HTCC2503]
          Length = 127

 Score = 99.9 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 54/113 (47%), Gaps = 3/113 (2%)

Query: 3   QYYHETIQESSIECRKREHWILDRSISLLSIAH-KSLPNSKQAVEALFYTSRVWVVFIQD 61
             Y +  ++S+   R+ E  +L +  + ++ A   +    ++ V A+     +W   I D
Sbjct: 7   HGYAQV-RKSTASGREVEIQLLTKIAAEMANADPSTPEGFRELVTAVHRNMEMWTALIVD 65

Query: 62  LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           L+ E+N + Q +K+ L+ +G + L    ++   ++   + +I +   +  GLK
Sbjct: 66  LLQEENKIDQTLKVGLLKLGQFSLVHSRKVVCRQAEP-EVLISINRQIAAGLK 117


>gi|86139474|ref|ZP_01058043.1| flagellar protein FlaF, putative [Roseobacter sp. MED193]
 gi|85823977|gb|EAQ44183.1| flagellar protein FlaF, putative [Roseobacter sp. MED193]
          Length = 128

 Score = 98.7 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 7/103 (6%)

Query: 18  KREHWILDRSISLLSIAHKSLPNSKQ------AVEALFYTSRVWVVFIQDLVSEDNHLPQ 71
            +E+ I+ RS   L  AHK    +K         EAL    ++W +F  DL S DN LPQ
Sbjct: 23  DKEYDIVARSTQNLLAAHKVASANKGTEGFKVLTEALHKNRKMWNIFTADLASSDNQLPQ 82

Query: 72  EVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +VK NL  +  +  +   ++   K+ + + +I++   V  GL+
Sbjct: 83  DVKDNLFYLAEFTRQHTSKVLSRKA-NVRALIEINMAVLRGLR 124


>gi|83594188|ref|YP_427940.1| putative flagellar protein FlaF [Rhodospirillum rubrum ATCC 11170]
 gi|83577102|gb|ABC23653.1| putative flagellar protein FlaF [Rhodospirillum rubrum ATCC 11170]
          Length = 104

 Score = 98.3 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 42/94 (44%), Gaps = 1/94 (1%)

Query: 22  WILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIG 81
               ++  +L  A     +     +AL +   +W +   D+    N LP E+K N++S+ 
Sbjct: 1   MAFTKAAVMLEEARTKPNDKTAFSQALRFNHLLWTIIQADITEPANTLPPELKANIMSLS 60

Query: 82  LWVLKECER-IRRNKSNSYQDIIDVISIVRDGLK 114
           L+V ++    +R  +    + +I +   +  GL+
Sbjct: 61  LFVDRQTTASLRSGEVGELEILISINRNLAAGLR 94


>gi|163851039|ref|YP_001639082.1| flagellar FlaF family protein [Methylobacterium extorquens PA1]
 gi|218529868|ref|YP_002420684.1| flagellar FlaF family protein [Methylobacterium chloromethanicum
           CM4]
 gi|240138172|ref|YP_002962644.1| putative flagellar protein FlaF [Methylobacterium extorquens AM1]
 gi|254560732|ref|YP_003067827.1| flagellar protein FlaF [Methylobacterium extorquens DM4]
 gi|163662644|gb|ABY30011.1| flagellar FlaF family protein [Methylobacterium extorquens PA1]
 gi|218522171|gb|ACK82756.1| flagellar FlaF family protein [Methylobacterium chloromethanicum
           CM4]
 gi|240008141|gb|ACS39367.1| putative flagellar protein FlaF [Methylobacterium extorquens AM1]
 gi|254268010|emb|CAX23878.1| putative flagellar protein FlaF [Methylobacterium extorquens DM4]
          Length = 124

 Score = 98.3 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 44/112 (39%), Gaps = 2/112 (1%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
            Y +     ++  R+ E  +L ++   L      +       +AL +  RVW +      
Sbjct: 7   AYAK-ASRVALSPREAEAAVLLKAAGRLQSLGSQVEAGPALNDALTFNQRVWTILASAAT 65

Query: 64  SEDNHLPQEVKLNLISIGLWVLKEC-ERIRRNKSNSYQDIIDVISIVRDGLK 114
              + LP EV+ ++  +  +V     + +    +   + ++ + + +  GL+
Sbjct: 66  EPSSPLPVEVRTSMAQLSAYVFHTILDTMIEPTAQKIESLVSLNNHIAAGLQ 117


>gi|260432288|ref|ZP_05786259.1| flagellar biosynthesis regulatory protein FlaF [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260416116|gb|EEX09375.1| flagellar biosynthesis regulatory protein FlaF [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 124

 Score = 98.3 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 45/112 (40%), Gaps = 3/112 (2%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLSIAHKSL-PNSKQAVEALFYTSRVWVVFIQDL 62
            Y ++   +    R  E+  + +    L  A      +    V+AL    R+W V    +
Sbjct: 10  AYAQSAAPT-RTPRDTEYEAISKITHRLKAAAARKASDYSGFVQALHDNRRLWSVLANGV 68

Query: 63  VSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
              DN LP +++  +  +  +  +   ++   K+   + ++++   V  GL+
Sbjct: 69  ADSDNALPNDLRARIFYLSEFTEQHTGQVLAKKA-DVEPLLEINLAVLRGLR 119


>gi|209967004|ref|YP_002299919.1| flagellar protein FlaF, putative [Rhodospirillum centenum SW]
 gi|209960470|gb|ACJ01107.1| flagellar protein FlaF, putative [Rhodospirillum centenum SW]
          Length = 138

 Score = 98.0 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 3/109 (2%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
            Y +    +    +  E          L  A  S  +    + AL    ++W+  + DL 
Sbjct: 5   SYQQRAA-TQETAQSLELRAFGFVTQGLRQASTSP-DPTARIRALHRNHQLWLTLVSDLA 62

Query: 64  SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDG 112
           + +N LP+E+K  LIS+G+W ++   R           +IDV + +  G
Sbjct: 63  TPENPLPEELKGRLISLGMWSMRYSLRAMEEDI-PVDPLIDVNTEIAGG 110


>gi|89056693|ref|YP_512144.1| flagellar biosynthesis regulatory protein FlaF [Jannaschia sp.
           CCS1]
 gi|88866242|gb|ABD57119.1| flagellar protein FlaF putative [Jannaschia sp. CCS1]
          Length = 124

 Score = 97.2 bits (241), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 43/101 (42%), Gaps = 1/101 (0%)

Query: 13  SIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQE 72
               R  E+       + L+ + ++     +   AL    ++W +   DL   DN LPQ 
Sbjct: 18  VRTERGTEYAAFQSVTARLNKSRRADAPMSERAAALHDNRKLWTILASDLADSDNGLPQS 77

Query: 73  VKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
           ++  L  +  + L +  +    ++++   +++V + V  GL
Sbjct: 78  LRAQLFYLAEFSLLQSRKALS-EADALTALVEVNTAVMRGL 117


>gi|167043519|gb|ABZ08215.1| putative flagellar protein FlaF [uncultured marine microorganism
           HF4000_APKG2J17]
          Length = 125

 Score = 97.2 bits (241), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 49/112 (43%), Gaps = 2/112 (1%)

Query: 3   QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDL 62
             Y  T  + ++  R  E     ++  LL+ A     +      AL +   +  +   DL
Sbjct: 7   DAYRRT-SKLALPPRAAEAEAFIKAARLLNQASAGPFDYDAYASALRFNQTLRTIIQADL 65

Query: 63  VSEDNHLPQEVKLNLISIGLWVLKECERIR-RNKSNSYQDIIDVISIVRDGL 113
             + +HLP  ++ +++++ L+V K+  +     K+    +++++   +  GL
Sbjct: 66  GRDGSHLPAGLRSDILNLSLYVDKQTLKALSDPKAEYLGELMEIDRAIARGL 117


>gi|260574410|ref|ZP_05842414.1| flagellar FlaF family protein [Rhodobacter sp. SW2]
 gi|259023306|gb|EEW26598.1| flagellar FlaF family protein [Rhodobacter sp. SW2]
          Length = 126

 Score = 97.2 bits (241), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 49/114 (42%), Gaps = 3/114 (2%)

Query: 2   RQYYHETIQESSIECRKREHWILDRSISLLSIA-HKSLPNSKQAVEALFYTSRVWVVFIQ 60
           R  Y    +  +   R  E+ +L R+   L  +  +   +      AL    R+W     
Sbjct: 9   RSAYAR-PEAPARTLRGIEYDLLARTTHQLKESWTRRKEDFSGFATALNDNLRLWSALAA 67

Query: 61  DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           D+   +N LP  ++  L  +  +  +   + R++++ S + ++D+ + V  GL+
Sbjct: 68  DVAEPENGLPAPLRAQLFYLYEFTAEHSRKARQDQA-SVEVLVDINTAVMRGLR 120


>gi|146341919|ref|YP_001206967.1| flagellar biosynthesis regulatory protein FlaF [Bradyrhizobium sp.
           ORS278]
 gi|146194725|emb|CAL78750.1| conserved hypothetical protein; putative FlaF protein
           [Bradyrhizobium sp. ORS278]
          Length = 96

 Score = 95.6 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 45/92 (48%), Gaps = 2/92 (2%)

Query: 24  LDRSISLLSIAHKSLPNS-KQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGL 82
           + ++   L     +     +   +AL +  R+W +F+  + +EDN  P +++ N+ +IG+
Sbjct: 1   MLKAARQLQEVQANWNGPDRNMYKALLFNRRLWTIFMSAMEAEDNPNPLDIRQNIANIGV 60

Query: 83  WVLKECERI-RRNKSNSYQDIIDVISIVRDGL 113
           +V+K+   +         + +ID+   +  GL
Sbjct: 61  FVMKQTIEMQMDPDPAKLKSLIDINCHIAAGL 92


>gi|148256807|ref|YP_001241392.1| flagellar biosynthesis regulatory protein FlaF [Bradyrhizobium sp.
           BTAi1]
 gi|146408980|gb|ABQ37486.1| hypothetical protein BBta_5526 [Bradyrhizobium sp. BTAi1]
          Length = 96

 Score = 95.3 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 42/92 (45%), Gaps = 2/92 (2%)

Query: 24  LDRSISLLSIAHKSLPNS-KQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGL 82
           + ++   L     +     +   +AL +  R+W +F+  +   DN    E++ N+ +IG+
Sbjct: 1   MLKAARQLQDVQANWNGPDRNMYKALLFNRRLWTIFMSAVEMNDNPNSIEIRQNIANIGV 60

Query: 83  WVLKECERI-RRNKSNSYQDIIDVISIVRDGL 113
           +V+K+   +         + +ID+   +  GL
Sbjct: 61  FVMKQTIEMQMDPDPAKLKSLIDINCHIAAGL 92


>gi|310816822|ref|YP_003964786.1| flagellar biosynthesis regulatory protein FlaF [Ketogulonicigenium
           vulgare Y25]
 gi|308755557|gb|ADO43486.1| flagellar biosynthesis regulatory protein FlaF [Ketogulonicigenium
           vulgare Y25]
          Length = 123

 Score = 94.9 bits (235), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 3/99 (3%)

Query: 15  ECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVK 74
           + R  E  I  R  + L  A     N    V+AL    R+W     D+ S  N LP +++
Sbjct: 20  DTRSTEQAIFSRITAALIAAE--GANFPTKVKALHDNRRLWTWLAADVASAQNQLPADLR 77

Query: 75  LNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
             L  +  + L    ++ R +      +ID+   +  GL
Sbjct: 78  ARLFYLAEFTLDHSSKVLR-EGADLAPLIDINRAMLLGL 115


>gi|163758035|ref|ZP_02165123.1| putative flagellin synthesis regulator protein [Hoeflea
           phototrophica DFL-43]
 gi|162284324|gb|EDQ34607.1| putative flagellin synthesis regulator protein [Hoeflea
           phototrophica DFL-43]
          Length = 115

 Score = 94.9 bits (235), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 53/115 (46%), Positives = 82/115 (71%), Gaps = 1/115 (0%)

Query: 1   MRQ-YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M Q  Y +  ++   E R+RE   ++ SISLL+ A      S++A+EA+++ SR+WV F+
Sbjct: 1   MYQFSYADVQEDGVAEAREREREAINHSISLLTAAKAKGVESREAIEAVYFVSRLWVRFV 60

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +DL S +N L +E++ NLISIG+W++KE ERIR+ +SN++Q IID+  I+RDGLK
Sbjct: 61  EDLASPENQLEEELRANLISIGIWIIKESERIRKRESNNFQGIIDISIIIRDGLK 115


>gi|89068720|ref|ZP_01156106.1| hypothetical protein OG2516_06766 [Oceanicola granulosus HTCC2516]
 gi|89045683|gb|EAR51745.1| hypothetical protein OG2516_06766 [Oceanicola granulosus HTCC2516]
          Length = 132

 Score = 93.7 bits (232), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 13/121 (10%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSK-----------QAVEALFYTS 52
            Y  TI+ES    R+ E  +L +  + L  A ++   +               +AL    
Sbjct: 5   AYKRTIRES-ETPRQIERRVLAQLTARLEDAAQAYDTAATAPERIAILAGGLRDALAENV 63

Query: 53  RVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDG 112
            VW+ F  DL S  N LP  +++ LIS+ LW+ K+  RI          +  V   V DG
Sbjct: 64  TVWLHFRYDLSSPANELPPALRVQLISLSLWIEKQTNRILGG-GQGLVQLAAVNRSVVDG 122

Query: 113 L 113
           L
Sbjct: 123 L 123


>gi|328543142|ref|YP_004303251.1| flagellar protein FlaF [polymorphum gilvum SL003B-26A1]
 gi|326412888|gb|ADZ69951.1| Flagellar protein FlaF [Polymorphum gilvum SL003B-26A1]
          Length = 97

 Score = 93.3 bits (231), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 42/92 (45%), Gaps = 3/92 (3%)

Query: 26  RSISLLSIAHKSLPN--SKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLW 83
           ++ + L +           +  +AL Y  ++W V +      ++HLPQ++K NL S+G++
Sbjct: 2   KAAARLQLIKDEWDGSSFAEKDDALAYNRKLWTVLVTSATGAESHLPQDLKNNLASLGVF 61

Query: 84  VLKECERIR-RNKSNSYQDIIDVISIVRDGLK 114
           V K    +           +I +   + +GL+
Sbjct: 62  VFKHTINVLIDPAPEKLDTLIFINRSIAEGLR 93


>gi|46200761|ref|ZP_00056442.2| hypothetical protein Magn03011143 [Magnetospirillum magnetotacticum
           MS-1]
          Length = 161

 Score = 92.2 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 43/102 (42%), Gaps = 4/102 (3%)

Query: 15  ECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSE-DNHLPQEV 73
             R+ E W L  +   ++ A +  P      +AL    ++W +F  DL+ + +     E 
Sbjct: 18  NPRETEAWALTEAARRMASASRGEPEG--MRDALRLNWKLWTIFQADLIGKVEAGETTET 75

Query: 74  KLNLISIGLWVLKECERIR-RNKSNSYQDIIDVISIVRDGLK 114
            +N++S+  +V            +   + ++++   +  GL+
Sbjct: 76  VVNMLSLCQFVDFHTVAALTEPDAPKLEVLVNINRNIASGLR 117


>gi|288962053|ref|YP_003452363.1| hypothetical protein AZL_c05260 [Azospirillum sp. B510]
 gi|288914333|dbj|BAI75819.1| hypothetical protein AZL_c05260 [Azospirillum sp. B510]
          Length = 181

 Score = 90.3 bits (223), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 2/103 (1%)

Query: 12  SSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQ 71
           +S   R  E W L  +     IA     + K   EAL    R+W +F   +  ED   P 
Sbjct: 20  TSDNPRDVEAWALAEAARR-IIAASHAKDEKAFREALQLNQRLWTIFQAAITEEDCGHPP 78

Query: 72  EVKLNLISIGLWVLKE-CERIRRNKSNSYQDIIDVISIVRDGL 113
           EV+ N+ ++ L V +E   R+          ++++   V  GL
Sbjct: 79  EVRTNIAALSLLVDRETTNRLVDLDFGKIDTLVNINRNVASGL 121


>gi|83309790|ref|YP_420054.1| hypothetical protein amb0691 [Magnetospirillum magneticum AMB-1]
 gi|82944631|dbj|BAE49495.1| hypothetical protein [Magnetospirillum magneticum AMB-1]
          Length = 165

 Score = 89.9 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 41/102 (40%), Gaps = 4/102 (3%)

Query: 15  ECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDL-VSEDNHLPQEV 73
             R+ E W L  +   ++ A +  P      E+L    ++W +F  DL    +     E 
Sbjct: 22  NPRETEAWALTEAARRMASASRGEPEG--MRESLRLNWKLWTIFQADLIGKAEAGEATET 79

Query: 74  KLNLISIGLWVLKECERIR-RNKSNSYQDIIDVISIVRDGLK 114
            +N++S+  +V            +   + ++++   +  GL+
Sbjct: 80  VVNMLSLCQFVDFHTVAALTEPDAAKLEVLVNINRNIASGLR 121


>gi|307945681|ref|ZP_07661017.1| protein FlaF [Roseibium sp. TrichSKD4]
 gi|307771554|gb|EFO30779.1| protein FlaF [Roseibium sp. TrichSKD4]
          Length = 97

 Score = 89.5 bits (221), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 3/92 (3%)

Query: 26  RSISLLSIAHKSL--PNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLW 83
           ++ + L +        +  Q  +AL Y  ++W + +    + +N LPQE+K N+ S+G++
Sbjct: 2   KAAARLQLVKDEWQQTSLAQRDDALTYNRKLWTILVTSATNGENPLPQEIKNNIASLGVF 61

Query: 84  VLKECERIR-RNKSNSYQDIIDVISIVRDGLK 114
           V K+        + N    +I +   + +GL+
Sbjct: 62  VFKQTMEAMTDEEGNKLNSLISINRAIAEGLR 93


>gi|118588728|ref|ZP_01546136.1| putative flagellar protein FlaF [Stappia aggregata IAM 12614]
 gi|118438714|gb|EAV45347.1| putative flagellar protein FlaF [Stappia aggregata IAM 12614]
          Length = 94

 Score = 89.5 bits (221), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 46/92 (50%), Gaps = 3/92 (3%)

Query: 26  RSISLLSIAHKSLPNS--KQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLW 83
           ++ + L +      NS   +  +AL Y  ++W + +    S ++ LPQ++K N+ ++G++
Sbjct: 2   KAAARLQLIKDEWANSSLAEKDDALVYNRKLWTILVTSATSAESELPQDIKNNIATLGVF 61

Query: 84  VLKECERIRRNKSNS-YQDIIDVISIVRDGLK 114
           V K+   +      +    +I +   + +GL+
Sbjct: 62  VFKQTMTVMTTDDENKLDTLISINRSIAEGLR 93


>gi|144897636|emb|CAM74500.1| Flagellar FlaF [Magnetospirillum gryphiswaldense MSR-1]
          Length = 122

 Score = 88.7 bits (219), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 48/111 (43%), Gaps = 3/111 (2%)

Query: 4   YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
            Y    Q S +  R+ +     ++ +LL    +S   ++    AL    R+W    + L 
Sbjct: 12  AYGR-AQGSVLPLRQADALAFTQAANLLEDCLRSADRTQ-REAALKRNQRLWTQVQRLLS 69

Query: 64  SEDNHLPQEVKLNLISIGLWVLKECERIR-RNKSNSYQDIIDVISIVRDGL 113
             D+ LP +V+ NL+ +  ++ ++  +      ++  + ++ +   V  GL
Sbjct: 70  RSDHPLPADVRANLLDLSHFIDRQTVKALISGAADDLRPLVKINREVAAGL 120


>gi|254488350|ref|ZP_05101555.1| flagellar protein, putative [Roseobacter sp. GAI101]
 gi|214045219|gb|EEB85857.1| flagellar protein, putative [Roseobacter sp. GAI101]
          Length = 88

 Score = 84.1 bits (207), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 38/84 (45%), Gaps = 2/84 (2%)

Query: 31  LSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECER 90
           +  A +        +EAL    ++W     ++   DN LP+E++  L  +  +       
Sbjct: 1   MKKAIEKKDLGP-LLEALHENRKLWRTLALNVSQSDNGLPEELRARLYYLSEFTNHHTSE 59

Query: 91  IRRNKSNSYQDIIDVISIVRDGLK 114
           + RNK ++   +++V + +  GLK
Sbjct: 60  VIRNKISAI-PLVEVNTAILRGLK 82


>gi|126730143|ref|ZP_01745955.1| flagellar protein FlaF, putative [Sagittula stellata E-37]
 gi|126709523|gb|EBA08577.1| flagellar protein FlaF, putative [Sagittula stellata E-37]
          Length = 81

 Score = 82.5 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 35/74 (47%), Gaps = 1/74 (1%)

Query: 40  NSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSY 99
              + VEAL    R+W     D+  E N LPQ+++  +  +  +V ++  ++   K    
Sbjct: 2   AYPKLVEALSDNQRLWTTLAIDVADEGNALPQDLRARIFYLAEFVQQQTSKVLTRKGR-I 60

Query: 100 QDIIDVISIVRDGL 113
             ++++ + +  GL
Sbjct: 61  TPLLEINAAILKGL 74


>gi|126734098|ref|ZP_01749845.1| flagellar protein FlaF, putative [Roseobacter sp. CCS2]
 gi|126716964|gb|EBA13828.1| flagellar protein FlaF, putative [Roseobacter sp. CCS2]
          Length = 74

 Score = 82.2 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 1/69 (1%)

Query: 45  VEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIID 104
           + A+    R+W     D+  + N LP+E++  +  +  +     +++ R K++    +ID
Sbjct: 1   MAAIHDNRRMWTTMAVDVADKGNALPKELRAQIFYLAEFTDHHSQQVIRGKADP-AALID 59

Query: 105 VISIVRDGL 113
           +   V  GL
Sbjct: 60  INMAVLKGL 68


>gi|46200759|ref|ZP_00056440.2| hypothetical protein Magn03011141 [Magnetospirillum magnetotacticum
           MS-1]
          Length = 124

 Score = 82.2 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 1/97 (1%)

Query: 18  KREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNL 77
           ++E   L  +   L  A  S   + + V AL +   VWV       S  + LP ++K NL
Sbjct: 15  EQEALSLAEAAIALDRARSSKDRAAELVAALNHNLEVWVAIRSLARSPGSPLPPDLKANL 74

Query: 78  ISIGLWVLKECERIRRNKSN-SYQDIIDVISIVRDGL 113
           I +  +V            + S   +I++   + +GL
Sbjct: 75  IRLSEFVAHTTFTNGATIGDSSLNTLININMQLAEGL 111


>gi|58039254|ref|YP_191218.1| flagellin assembly protein [Gluconobacter oxydans 621H]
 gi|58001668|gb|AAW60562.1| Flagellin assembly protein [Gluconobacter oxydans 621H]
          Length = 140

 Score = 79.1 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 6/109 (5%)

Query: 5   YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64
           Y +    S +  R+ E        +LL+ A       +  V AL    ++W +    +  
Sbjct: 8   YQK-QSGSYLSSREVEVMAFRHVNALLTQASDH----EAKVAALAANLKLWSLLSLSVER 62

Query: 65  EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
            D  LP  ++ +LI +G W ++             Q +ID+ + + +GL
Sbjct: 63  VDCPLPPVLRDDLIKVGSWAMRYSNSAFNAP-KDLQPLIDINNDMIEGL 110


>gi|254469993|ref|ZP_05083397.1| flagellar FlaF [Pseudovibrio sp. JE062]
 gi|211960304|gb|EEA95500.1| flagellar FlaF [Pseudovibrio sp. JE062]
          Length = 99

 Score = 76.0 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 14/92 (15%), Positives = 44/92 (47%), Gaps = 3/92 (3%)

Query: 26  RSISLLSIAHKSLPNS--KQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLW 83
           ++ + LS+  +       ++  E L +   +W +F+ +  +  + LP E++ N+ ++ L+
Sbjct: 2   KAAARLSVLQREWDTVSREERNETLIFNRTLWTIFVTEATASHSELPLELQNNIANLALF 61

Query: 84  VLKECERIRRN-KSNSYQDIIDVISIVRDGLK 114
           +      +    +  + + +I++   +  GL+
Sbjct: 62  MFNRTIEMMGGEEPEALETMININKSLAAGLR 93


>gi|83309788|ref|YP_420052.1| hypothetical protein amb0689 [Magnetospirillum magneticum AMB-1]
 gi|82944629|dbj|BAE49493.1| hypothetical protein [Magnetospirillum magneticum AMB-1]
          Length = 124

 Score = 76.0 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 1/97 (1%)

Query: 18  KREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNL 77
           ++E   L  +   L  A      + + V AL +   VWV       S  + LP ++K NL
Sbjct: 15  EQEALSLAEAAIALDRARSGENRAAELVAALNHNLEVWVAIRSLARSPGSALPPDLKANL 74

Query: 78  ISIGLWVLKECERIRRNKSNS-YQDIIDVISIVRDGL 113
           I +  +V         +  +S    +I++   + +GL
Sbjct: 75  IRLSEFVAHTTFTNGASIGDSALNTLININMQLAEGL 111


>gi|83594178|ref|YP_427930.1| hypothetical protein Rru_A2846 [Rhodospirillum rubrum ATCC 11170]
 gi|83577092|gb|ABC23643.1| hypothetical protein Rru_A2846 [Rhodospirillum rubrum ATCC 11170]
          Length = 118

 Score = 74.1 bits (181), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 2/95 (2%)

Query: 20  EHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLIS 79
           + + L  +   LS A  +  +      AL    ++WV     +   DN LPQ+VK NLI 
Sbjct: 17  DAFALTEAAVALSRALAT-ADKPALAAALEGNFQLWVGIRTLVSRSDNPLPQDVKDNLIR 75

Query: 80  IGLWVLKECERIRRN-KSNSYQDIIDVISIVRDGL 113
           +  +  ++   +      ++ + +I+    + +GL
Sbjct: 76  LSQYTAQKTFELHDGVDEDTVESLINTNLQIAEGL 110


>gi|162147450|ref|YP_001601911.1| hypothetical protein GDI_1666 [Gluconacetobacter diazotrophicus PAl
           5]
 gi|161786027|emb|CAP55609.1| hypothetical protein GDI1666 [Gluconacetobacter diazotrophicus PAl
           5]
          Length = 132

 Score = 74.1 bits (181), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 44/111 (39%), Gaps = 2/111 (1%)

Query: 3   QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDL 62
           + Y ++I  SS+  R+ +       I  L  A  S  +      AL  + R+W + +   
Sbjct: 8   KAY-QSIAGSSLTGREADAACFRMLIDELKAAEAS-SDHTVRRHALARSQRLWAMIMNAN 65

Query: 63  VSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
           V +    PQE +   +++         R   + +     +I +   VRDGL
Sbjct: 66  VQDSGLTPQEDRQLFVTLAHRSQLYGIRAMLDPALPLTPLIRIAENVRDGL 116


>gi|209545559|ref|YP_002277788.1| hypothetical protein Gdia_3448 [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209533236|gb|ACI53173.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 131

 Score = 74.1 bits (181), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 44/111 (39%), Gaps = 2/111 (1%)

Query: 3   QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDL 62
           + Y ++I  SS+  R+ +       I  L  A  S  +      AL  + R+W + +   
Sbjct: 7   KAY-QSIAGSSLTGREADAACFRMLIDELKAAEAS-SDHTVRRHALARSQRLWAMIMNAN 64

Query: 63  VSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
           V +    PQE +   +++         R   + +     +I +   VRDGL
Sbjct: 65  VQDSGLTPQEDRQLFVTLAHRSQLYGIRAMLDPALPLTPLIRIAENVRDGL 115


>gi|296533830|ref|ZP_06896366.1| conserved hypothetical protein [Roseomonas cervicalis ATCC 49957]
 gi|296265848|gb|EFH11937.1| conserved hypothetical protein [Roseomonas cervicalis ATCC 49957]
          Length = 123

 Score = 73.7 bits (180), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 41/98 (41%), Gaps = 6/98 (6%)

Query: 16  CRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKL 75
            R+ E      + + L  A ++   ++   EAL    R+W   +  L + +N LP  ++ 
Sbjct: 28  PREEEAAAFRSAATTLLAAREAGHEARG--EALRLNRRLWQAVLIALAAPENALPMPLRQ 85

Query: 76  NLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
            L ++   +L+E +R R         +  +   +  GL
Sbjct: 86  GLATLATTMLREMDRNRP----DLAFLAAINQEIAAGL 119


>gi|239787500|emb|CAX83970.1| conserved uncharacterized protein [uncultured bacterium]
          Length = 126

 Score = 69.8 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 38/96 (39%), Gaps = 1/96 (1%)

Query: 18  KREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNL 77
           + +   L ++  LL  A  +  + +  V AL    ++WV         D +LP E K NL
Sbjct: 19  EAKASALVKAALLLDQAKMNRADKQAMVVALDNNLQLWVAIRTIARQPDYNLPDEAKENL 78

Query: 78  ISIGLWVLKECER-IRRNKSNSYQDIIDVISIVRDG 112
             +  +V     +        +   ++++   + +G
Sbjct: 79  AQLSHFVSDLTFKHGLTITDAALDALVNINLRLAEG 114


>gi|46200769|ref|ZP_00056465.2| hypothetical protein Magn03011167 [Magnetospirillum magnetotacticum
           MS-1]
          Length = 114

 Score = 64.4 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 38/95 (40%), Gaps = 2/95 (2%)

Query: 20  EHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLIS 79
           E        + +++       ++    AL +  ++WV     +   ++ LP  VK NL  
Sbjct: 14  EQDAFGLVEAAITLDQSRGDKAR-LAAALDHNLQLWVAIRTLVTDTNSGLPDAVKTNLTR 72

Query: 80  IGLWVLKEC-ERIRRNKSNSYQDIIDVISIVRDGL 113
           +  +V     ++      N+   +++V   + +GL
Sbjct: 73  LSDFVADTTLKKGVDISDNTITTLVNVNLQISEGL 107


>gi|218507949|ref|ZP_03505827.1| flagellar biosynthesis regulatory protein FlaF [Rhizobium etli
          Brasil 5]
          Length = 98

 Score = 62.5 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/60 (45%), Positives = 39/60 (65%), Gaps = 1/60 (1%)

Query: 1  MRQ-YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
          M Q  Y E +Q+S  + ++RE  +LDRSI LL++A       ++A+E LFYT RVW+ FI
Sbjct: 1  MYQFSYAEVMQDSVADAKEREWQVLDRSIELLALARDKDTYGREAIEVLFYTRRVWISFI 60


>gi|83312910|ref|YP_423174.1| hypothetical protein amb3811 [Magnetospirillum magneticum AMB-1]
 gi|82947751|dbj|BAE52615.1| hypothetical protein [Magnetospirillum magneticum AMB-1]
          Length = 114

 Score = 61.7 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 36/95 (37%), Gaps = 2/95 (2%)

Query: 20  EHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLIS 79
           E        + +++       ++    AL    ++WV     +    + LP  VK NL  
Sbjct: 14  EQDAFGLVEAAITLDQSRGDKAR-LAAALEQNLQLWVAIRTLVSDATSGLPDAVKTNLTR 72

Query: 80  IGLWVLKEC-ERIRRNKSNSYQDIIDVISIVRDGL 113
           +  +V     ++      N+   +++V   + +GL
Sbjct: 73  LSDFVADTTLKKGVEISDNTITTLVNVNLQISEGL 107


>gi|288962913|ref|YP_003453207.1| hypothetical protein AZL_e03180 [Azospirillum sp. B510]
 gi|288915179|dbj|BAI76663.1| hypothetical protein AZL_e03180 [Azospirillum sp. B510]
          Length = 193

 Score = 61.0 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 50/113 (44%), Gaps = 6/113 (5%)

Query: 3   QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDL 62
           + + +TI  ++    +++  +L ++   L  +       ++   AL    ++W+     L
Sbjct: 41  ESWADTILRTNFASVEQDSIVLLQAAGSLLDSES----PEKVNVALDQNLKLWIAIKTVL 96

Query: 63  VSEDNHLPQEVKLNLISIGLWVLKECERIRRN--KSNSYQDIIDVISIVRDGL 113
           +++D  +  EVK NL ++  +V+       +   +++    +  +   + +GL
Sbjct: 97  LNDDCPVEPEVKANLRNLAQYVVSTTMLATQGAIETSKLVSLARLNMNIAEGL 149


>gi|296535171|ref|ZP_06897393.1| hypothetical protein HMPREF0731_2875 [Roseomonas cervicalis ATCC
           49957]
 gi|296264499|gb|EFH10902.1| hypothetical protein HMPREF0731_2875 [Roseomonas cervicalis ATCC
           49957]
          Length = 134

 Score = 60.6 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 16/105 (15%), Positives = 41/105 (39%), Gaps = 9/105 (8%)

Query: 11  ESSIECRKREHWILDRSISLLSIAHKSL--PNSKQAVEALFYTSRVWVVFIQDLVSEDNH 68
           +++   R++E  +       L +A +       +   +AL    R++      ++ E   
Sbjct: 18  KAARSLREQEAEVYALVSGRLRVAIEGSEIDRVRARADAL----RLFSTVRILVLHESCE 73

Query: 69  LPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
           LP  ++  ++S+    ++E E+     +     + D+      GL
Sbjct: 74  LPAPLRGQIVSLCRVAMREVEK---EDAADLGFLADLCDSFAGGL 115


>gi|144901296|emb|CAM78160.1| conserved hypothetical protein [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 110

 Score = 59.8 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 35/99 (35%), Gaps = 6/99 (6%)

Query: 18  KREHWIL--DRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKL 75
             E       R+  +L  A     +  +  EAL     VWV     + S+      +V  
Sbjct: 9   AIEEQAFQLSRAAIMLDQAKA---DRSKLEEALELNMAVWVALRTLITSDGCSASSQVVE 65

Query: 76  NLISIGLWV-LKECERIRRNKSNSYQDIIDVISIVRDGL 113
           NLI +  +V  K           S   +I+V   + +GL
Sbjct: 66  NLIRLANFVAEKTIAGAAAATDASIDALINVNLQISEGL 104


>gi|89069827|ref|ZP_01157162.1| flagellar protein FlaF, putative [Oceanicola granulosus HTCC2516]
 gi|89044628|gb|EAR50744.1| flagellar protein FlaF, putative [Oceanicola granulosus HTCC2516]
          Length = 62

 Score = 57.5 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 9/56 (16%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 58  FIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
              ++   +N L ++++  L  +  +V  +  +  + +      +I+V + V  GL
Sbjct: 1   MAAEVADRNNALSEDLRARLFYLSEFVGYQTRKALKGQG-GVASLIEVNTAVMRGL 55


>gi|23005490|ref|ZP_00048277.1| hypothetical protein Magn03001225 [Magnetospirillum
          magnetotacticum MS-1]
          Length = 64

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 2  RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSL-PNSKQAVEALFYTSRVWVVFIQ 60
          R  Y E ++++    R RE    DR++ LL  A         +   A+ Y   +W + I 
Sbjct: 3  RMSYSEIMEDAPDLGRAREREAFDRALGLLQSAEARGVTAGHERTAAISYIQDLWNLLIA 62


>gi|74316799|ref|YP_314539.1| hypothetical protein Tbd_0781 [Thiobacillus denitrificans ATCC
           25259]
 gi|74056294|gb|AAZ96734.1| hypothetical protein Tbd_0781 [Thiobacillus denitrificans ATCC
           25259]
          Length = 128

 Score = 43.3 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 34/100 (34%), Gaps = 4/100 (4%)

Query: 19  REHWILDRSISLLSIAHKSL---PNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKL 75
            E   LD   + L    +        +Q   AL  +   W      L      LP EV+ 
Sbjct: 23  AEVAQLDGIAAQLMRVQRHWHDDDRERQLAAALAASRSTWHAIQAALAEATLPLPLEVRQ 82

Query: 76  NLISIGLWVLKECERI-RRNKSNSYQDIIDVISIVRDGLK 114
           NL+ + ++   +         +++   +I +   +   LK
Sbjct: 83  NLLILSVYAESKIGACEAAPDADTLGSLIALTRTLAGSLK 122


>gi|7799886|emb|CAB91080.1| Env protein [Human immunodeficiency virus 1]
          Length = 847

 Score = 41.3 bits (96), Expect = 0.048,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 15/88 (17%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y   +W +             QE+K   IS+     + V 
Sbjct: 766 LLIAARSVDLLGRRGWEALKY---LWNLLQY--------WSQELKNRAISLLDATAIAVA 814

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGL 113
           +  +RI      +++ I+++   +R GL
Sbjct: 815 EGTDRIIEIIQRTFRAILNIPRRIRQGL 842


>gi|91176537|gb|ABE26658.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 861

 Score = 40.2 bits (93), Expect = 0.093,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 38/97 (39%), Gaps = 21/97 (21%)

Query: 21  HWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI 80
             +L     L+ +  +         EAL Y   +W +             QE+K + +S+
Sbjct: 777 RDLLLIVTRLVELLGRRG------WEALKY---LWNLLQY--------WSQELKNSAVSL 819

Query: 81  ----GLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
                + V +  +R+      +++ I+++   +R GL
Sbjct: 820 LDAIAIAVAEGTDRVLEGLQRAFRAILNIPRRIRQGL 856


>gi|225348169|gb|ACN87123.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 848

 Score = 39.0 bits (90), Expect = 0.21,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 15/88 (17%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A    P  ++  EAL Y   +W +    +        QE++ + +++     + V 
Sbjct: 767 LLIAARIVEPLGRRGWEALKY---LWNLLQYWI--------QELRNSAVNLLNTTAIAVA 815

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGL 113
           +  +RI       ++ II +   +R GL
Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGL 843


>gi|83312762|ref|YP_423026.1| hypothetical protein amb3663 [Magnetospirillum magneticum AMB-1]
 gi|82947603|dbj|BAE52467.1| hypothetical protein [Magnetospirillum magneticum AMB-1]
          Length = 173

 Score = 38.6 bits (89), Expect = 0.27,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 9/90 (10%)

Query: 27  SISLLSIAH--KSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWV 84
             +L+  A   ++  ++    +AL    RVW+V  +      N        +      +V
Sbjct: 17  IAALMEAADGIEAANDTAAFKDALNANFRVWLVVRE--CGVGNGWAVPTSRD----AEFV 70

Query: 85  LKECERIRRN-KSNSYQDIIDVISIVRDGL 113
           +       R    +    II +   V  GL
Sbjct: 71  IHGSSGQGRGVNDDDIGAIIPINRRVAHGL 100


>gi|225348165|gb|ACN87121.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 848

 Score = 38.2 bits (88), Expect = 0.33,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 15/88 (17%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       +   EAL Y   +W +    +        QE++ + +++     + V 
Sbjct: 767 LLIAARIVELLGRGGWEALKY---LWNLLQYWI--------QELRNSAVNLLNTTAIAVA 815

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGL 113
           +  +RI       ++ II +   +R GL
Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGL 843


>gi|256252473|dbj|BAH97593.1| Env [Human immunodeficiency virus 1]
 gi|256252483|dbj|BAH97602.1| Env [Human immunodeficiency virus 1]
          Length = 858

 Score = 38.2 bits (88), Expect = 0.34,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 15/87 (17%)

Query: 31  LSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVLK 86
           L  A       +   EAL Y   +W +             QE+K + IS+     + V +
Sbjct: 778 LIAARTVNRGLRGGWEALKY---LWNLTQY--------WSQELKNSAISLLNTIAIVVAE 826

Query: 87  ECERIRRNKSNSYQDIIDVISIVRDGL 113
             +R+          I+++   +R GL
Sbjct: 827 GTDRVIEALQGVLTAILNIPRRIRQGL 853


>gi|32189807|gb|AAP75718.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 843

 Score = 38.2 bits (88), Expect = 0.34,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 15/88 (17%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       +   EAL Y   +W +             QE+K + IS+     + V 
Sbjct: 762 LLIAARVVELLGRGGWEALKY---LWSLLQY--------WSQELKNSAISLLNTTAIVVA 810

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGL 113
           +  +R+        + I+++   +R GL
Sbjct: 811 EGTDRVLEALQRVGRAILNIPRRIRQGL 838


>gi|222428594|gb|ACM50205.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 850

 Score = 38.2 bits (88), Expect = 0.36,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 15/88 (17%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y    W + +           QE+K + IS+     + V 
Sbjct: 769 LLIAARGLEHLGRRGWEALKY---CWNLLLY--------WSQELKSSAISLLNTTAIVVA 817

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGL 113
           +  +RI      +++  I +   +R GL
Sbjct: 818 EGTDRILEGLQTAFRAFIHIPRRIRQGL 845


>gi|295239063|gb|ADF84323.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 864

 Score = 37.9 bits (87), Expect = 0.48,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 15/88 (17%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y    W +             QE+K + +S+     + V 
Sbjct: 783 LLIAARIVGLLGRRGWEALKY---WWNLLQY--------WSQELKNSAVSLXXXXAIAVA 831

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGL 113
           +  +R+      +Y+ I ++   +R GL
Sbjct: 832 EGTDRVIEGLQRAYRGICNIPRRIRQGL 859


>gi|225348175|gb|ACN87126.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 848

 Score = 37.9 bits (87), Expect = 0.49,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 15/88 (17%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y   +W +    +        QE++ + +++     + V 
Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLLQYWI--------QELRNSAVNLLNTTAIAVA 815

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGL 113
           +  +RI       ++ II +   +R GL
Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGL 843


>gi|326370908|gb|ADZ56656.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 850

 Score = 37.9 bits (87), Expect = 0.50,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 35/88 (39%), Gaps = 15/88 (17%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  E L Y   +W +             QE+K + +S+     + V 
Sbjct: 769 LLIAARLVELLGRRGWEXLKY---LWNLLQY--------WSQELKNSAVSLLNTTAVAVA 817

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGL 113
           +  +R+      +++ +I +   +R GL
Sbjct: 818 EGTDRVIEAVQRAFRALIHIPRRIRQGL 845


>gi|225348177|gb|ACN87127.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 848

 Score = 37.9 bits (87), Expect = 0.50,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 15/88 (17%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y   +W +    +        QE++ + +++     + V 
Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLLQYWI--------QELRNSAVNLLNTTAIAVA 815

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGL 113
           +  +RI       ++ II +   +R GL
Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGL 843


>gi|225348185|gb|ACN87131.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 848

 Score = 37.9 bits (87), Expect = 0.52,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 15/88 (17%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y   +W +    +        QE++ + +++     + V 
Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLLQYWI--------QELRNSAVNLLNTTAIAVA 815

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGL 113
           +  +RI       ++ II +   +R GL
Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGL 843


>gi|225348171|gb|ACN87124.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 843

 Score = 37.9 bits (87), Expect = 0.52,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 15/88 (17%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y   +W +    +        QE++ + +++     + V 
Sbjct: 762 LLIAARIVELLGRRGWEALKY---LWNLLQYWI--------QELRNSAVNLLNTTAIAVA 810

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGL 113
           +  +RI       ++ II +   +R GL
Sbjct: 811 EGTDRIIELVQRGFRAIIHIPRRIRQGL 838


>gi|225348181|gb|ACN87129.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 848

 Score = 37.9 bits (87), Expect = 0.52,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 15/88 (17%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y   +W +    +        QE++ + +++     + V 
Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLLQYWI--------QELRNSAVNLLNTTAIAVA 815

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGL 113
           +  +RI       ++ II +   +R GL
Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGL 843


>gi|225348211|gb|ACN87144.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 848

 Score = 37.9 bits (87), Expect = 0.53,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 15/88 (17%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y   +W +    +        QE++ + +++     + V 
Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLLQYWI--------QELRNSAVNLLNTTAIAVA 815

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGL 113
           +  +RI       ++ II +   +R GL
Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGL 843


>gi|225348167|gb|ACN87122.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 848

 Score = 37.9 bits (87), Expect = 0.53,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 15/88 (17%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y   +W +    +        QE++ + +++     + V 
Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLLQYWI--------QELRNSAVNLLNTTAIAVA 815

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGL 113
           +  +RI       ++ II +   +R GL
Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGL 843


>gi|225348205|gb|ACN87141.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 848

 Score = 37.9 bits (87), Expect = 0.54,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 15/88 (17%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y   +W +    +        QE++ + +++     + V 
Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLLQYWI--------QELRNSAVNLLNTTAIAVA 815

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGL 113
           +  +RI       ++ II +   +R GL
Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGL 843


>gi|225348209|gb|ACN87143.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 848

 Score = 37.9 bits (87), Expect = 0.54,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 15/88 (17%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y   +W +    +        QE++ + +++     + V 
Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLLQYWI--------QELRNSAVNLLNTTAIAVA 815

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGL 113
           +  +RI       ++ II +   +R GL
Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGL 843


>gi|330829383|ref|YP_004392335.1| ABC transporter periplasmic binding protein [Aeromonas veronii
           B565]
 gi|328804519|gb|AEB49718.1| ABC transporter, periplasmic binding protein [Aeromonas veronii
           B565]
          Length = 339

 Score = 37.9 bits (87), Expect = 0.55,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 3/86 (3%)

Query: 18  KREHWILDRSISLLSIAHKSLP-NSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLN 76
             E   + +    L  A + L   + +   AL Y     VV I D+       P ++K  
Sbjct: 249 DMEAAAIIKGTPKLEAAKQLLDFAATEQANAL-YNKSFAVVAIPDVAQPRAGYPADIKGQ 307

Query: 77  LI-SIGLWVLKECERIRRNKSNSYQD 101
           +I +   W  +E   I    S S+  
Sbjct: 308 MIDNDFSWAARERNAILAQWSASFDG 333


>gi|225348199|gb|ACN87138.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 848

 Score = 37.9 bits (87), Expect = 0.55,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 15/88 (17%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y   +W +    +        QE++ + +++     + V 
Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLLQYWI--------QELRNSAVNLLNTTAIAVA 815

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGL 113
           +  +RI       ++ II +   +R GL
Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGL 843


>gi|225348193|gb|ACN87135.1| envelope glycoprotein [Human immunodeficiency virus 1]
 gi|225348195|gb|ACN87136.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 848

 Score = 37.9 bits (87), Expect = 0.55,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 15/88 (17%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y   +W +    +        QE++ + +++     + V 
Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLLQYWI--------QELRNSAVNLLNTTAIAVA 815

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGL 113
           +  +RI       ++ II +   +R GL
Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGL 843


>gi|225348207|gb|ACN87142.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 848

 Score = 37.5 bits (86), Expect = 0.61,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 15/88 (17%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y   +W +    +        QE++ + +++     + V 
Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLLQYWI--------QELRNSAVNLLNTTAIAVA 815

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGL 113
           +  +RI       ++ II +   +R GL
Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGL 843


>gi|225348203|gb|ACN87140.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 848

 Score = 37.5 bits (86), Expect = 0.61,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 15/88 (17%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y   +W +    +        QE++ + +++     + V 
Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLLQYWI--------QELRNSAVNLLNTTAIAVA 815

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGL 113
           +  +RI       ++ II +   +R GL
Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGL 843


>gi|225348197|gb|ACN87137.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 848

 Score = 37.5 bits (86), Expect = 0.61,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 15/88 (17%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y   +W +    +        QE++ + +++     + V 
Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLLQYWI--------QELRNSAVNLLNTTAIAVA 815

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGL 113
           +  +RI       ++ II +   +R GL
Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGL 843


>gi|225348189|gb|ACN87133.1| envelope glycoprotein [Human immunodeficiency virus 1]
 gi|225348191|gb|ACN87134.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 848

 Score = 37.5 bits (86), Expect = 0.61,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 15/88 (17%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y   +W +    +        QE++ + +++     + V 
Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLLQYWI--------QELRNSAVNLLNTTAIAVA 815

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGL 113
           +  +RI       ++ II +   +R GL
Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGL 843


>gi|225348183|gb|ACN87130.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 848

 Score = 37.5 bits (86), Expect = 0.61,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 15/88 (17%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y   +W +    +        QE++ + +++     + V 
Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLLQYWI--------QELRNSAVNLLNTTAIAVA 815

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGL 113
           +  +RI       ++ II +   +R GL
Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGL 843


>gi|225348179|gb|ACN87128.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 843

 Score = 37.5 bits (86), Expect = 0.61,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 15/88 (17%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y   +W +    +        QE++ + +++     + V 
Sbjct: 762 LLIAARIVELLGRRGWEALKY---LWNLLQYWI--------QELRNSAVNLLNTTAIAVA 810

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGL 113
           +  +RI       ++ II +   +R GL
Sbjct: 811 EGTDRIIELVQRGFRAIIHIPRRIRQGL 838


>gi|225348173|gb|ACN87125.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 848

 Score = 37.5 bits (86), Expect = 0.61,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 15/88 (17%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y   +W +    +        QE++ + +++     + V 
Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLLQYWI--------QELRNSAVNLLNTTAIAVA 815

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGL 113
           +  +RI       ++ II +   +R GL
Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGL 843


>gi|225348201|gb|ACN87139.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 848

 Score = 37.5 bits (86), Expect = 0.61,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 15/88 (17%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y   +W +    +        QE++ + +++     + V 
Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLLQYWI--------QELRNSAVNLLNTTAIAVA 815

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGL 113
           +  +RI       ++ II +   +R GL
Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGL 843


>gi|317408014|gb|ADV17540.1| envelope glycoprotein [Human immunodeficiency virus 1]
 gi|317408030|gb|ADV17548.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 847

 Score = 37.5 bits (86), Expect = 0.62,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 15/88 (17%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y   +W +             QE+K + IS+     + V 
Sbjct: 766 LLIAARIVELLGRRGWEALKY---LWNLLQY--------WSQELKNSAISLLNTTAIAVG 814

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGL 113
           +  +RI      + + I+++   +R GL
Sbjct: 815 EGTDRIIEALQRAGRAILNIPRRIRQGL 842


>gi|317408010|gb|ADV17538.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 849

 Score = 37.5 bits (86), Expect = 0.65,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 15/88 (17%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y   +W +             QE+K + IS+     + V 
Sbjct: 768 LLIAARIVELLGRRGWEALKY---LWNLLQY--------WSQELKNSAISLLNTTAIVVG 816

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGL 113
           +  +R+      + + I+++   +R GL
Sbjct: 817 EGTDRVIEALQRAGRAILNIPRRIRQGL 844


>gi|317407992|gb|ADV17529.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 849

 Score = 37.5 bits (86), Expect = 0.65,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 15/88 (17%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y   +W +             QE+K + IS+     + V 
Sbjct: 768 LLIAARIVELLGRRGWEALKY---LWNLLQY--------WSQELKNSAISLLNTTAIVVG 816

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGL 113
           +  +R+      + + I+++   +R GL
Sbjct: 817 EGTDRVIEALQRAGRAILNIPRRIRQGL 844


>gi|317407986|gb|ADV17526.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 849

 Score = 37.5 bits (86), Expect = 0.65,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 15/88 (17%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y   +W +             QE+K + IS+     + V 
Sbjct: 768 LLIAARIVELLGRRGWEALKY---LWNLLQY--------WSQELKNSAISLLNTTAIVVG 816

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGL 113
           +  +R+      + + I+++   +R GL
Sbjct: 817 EGTDRVIEALQRAGRAILNIPRRIRQGL 844


>gi|317408024|gb|ADV17545.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 853

 Score = 37.5 bits (86), Expect = 0.71,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 15/88 (17%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y   +W +             QE+K + IS+     + V 
Sbjct: 772 LLIAARIVELLGRRGWEALKY---LWNLLQY--------WSQELKNSAISLLNTTAIVVG 820

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGL 113
           +  +RI      + + I+++   +R GL
Sbjct: 821 EGTDRIIEALQRTGRAILNIPRRIRQGL 848


>gi|317408028|gb|ADV17547.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 849

 Score = 37.5 bits (86), Expect = 0.73,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 15/88 (17%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y   +W +             QE+K + IS+     + V 
Sbjct: 768 LLIAARIVELLGRRGWEALKY---LWNLLQY--------WSQELKNSAISLLNTTAIVVG 816

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGL 113
           +  +RI      + + I+++   +R GL
Sbjct: 817 EGTDRIIEALQRAGRAILNIPRRIRQGL 844


>gi|317408022|gb|ADV17544.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 849

 Score = 37.5 bits (86), Expect = 0.73,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 15/88 (17%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y   +W +             QE+K + IS+     + V 
Sbjct: 768 LLIAARIVELLGRRGWEALKY---LWNLLQY--------WSQELKNSAISLLNTTAIVVG 816

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGL 113
           +  +RI      + + I+++   +R GL
Sbjct: 817 EGTDRIIEALQRAGRAILNIPRRIRQGL 844


>gi|317408020|gb|ADV17543.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 853

 Score = 37.5 bits (86), Expect = 0.73,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 15/88 (17%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y   +W +             QE+K + IS+     + V 
Sbjct: 772 LLIAARIVELLGRRGWEALKY---LWNLLQY--------WSQELKNSAISLLNTTAIVVG 820

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGL 113
           +  +RI      + + I+++   +R GL
Sbjct: 821 EGTDRIIEALQRAGRAILNIPRRIRQGL 848


>gi|317408018|gb|ADV17542.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 847

 Score = 37.5 bits (86), Expect = 0.73,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 15/88 (17%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y   +W +             QE+K + IS+     + V 
Sbjct: 766 LLIAARIVELLGRRGWEALKY---LWNLLQY--------WSQELKNSAISLLNTTAIVVG 814

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGL 113
           +  +RI      + + I+++   +R GL
Sbjct: 815 EGTDRIIEALQRAGRAILNIPRRIRQGL 842


>gi|317408012|gb|ADV17539.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 853

 Score = 37.5 bits (86), Expect = 0.73,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 15/88 (17%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y   +W +             QE+K + IS+     + V 
Sbjct: 772 LLIAARIVELLGRRGWEALKY---LWNLLQY--------WSQELKNSAISLLNTTAIVVG 820

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGL 113
           +  +RI      + + I+++   +R GL
Sbjct: 821 EGTDRIIEALQRAGRAILNIPRRIRQGL 848


>gi|317408006|gb|ADV17536.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 849

 Score = 37.5 bits (86), Expect = 0.73,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 15/88 (17%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y   +W +             QE+K + IS+     + V 
Sbjct: 768 LLIAARIVELLGRRGWEALKY---LWNLLQY--------WSQELKNSAISLLNTTAIVVG 816

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGL 113
           +  +RI      + + I+++   +R GL
Sbjct: 817 EGTDRIIEALQRAGRAILNIPRRIRQGL 844


>gi|317408000|gb|ADV17533.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 849

 Score = 37.5 bits (86), Expect = 0.73,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 15/88 (17%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y   +W +             QE+K + IS+     + V 
Sbjct: 768 LLIAARIVELLGRRGWEALKY---LWNLLQY--------WSQELKNSAISLLNTTAIVVG 816

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGL 113
           +  +RI      + + I+++   +R GL
Sbjct: 817 EGTDRIIEALQRAGRAILNIPRRIRQGL 844


>gi|317407998|gb|ADV17532.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 849

 Score = 37.5 bits (86), Expect = 0.73,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 15/88 (17%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y   +W +             QE+K + IS+     + V 
Sbjct: 768 LLIAARIVELLGRRGWEALKY---LWNLLQY--------WSQELKNSAISLLNTTAIVVG 816

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGL 113
           +  +RI      + + I+++   +R GL
Sbjct: 817 EGTDRIIEALQRAGRAILNIPRRIRQGL 844


>gi|317407996|gb|ADV17531.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 848

 Score = 37.5 bits (86), Expect = 0.73,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 15/88 (17%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y   +W +             QE+K + IS+     + V 
Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLLQY--------WSQELKNSAISLLNTTAIVVG 815

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGL 113
           +  +RI      + + I+++   +R GL
Sbjct: 816 EGTDRIIEALQRAGRAILNIPRRIRQGL 843


>gi|317407994|gb|ADV17530.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 849

 Score = 37.5 bits (86), Expect = 0.73,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 15/88 (17%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y   +W +             QE+K + IS+     + V 
Sbjct: 768 LLIAARIVELLGRRGWEALKY---LWNLLQY--------WSQELKNSAISLLNTTAIVVG 816

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGL 113
           +  +RI      + + I+++   +R GL
Sbjct: 817 EGTDRIIEALQRAGRAILNIPRRIRQGL 844


>gi|317408032|gb|ADV17549.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 849

 Score = 37.1 bits (85), Expect = 0.77,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 15/88 (17%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y   +W +             QE+K + IS+     + V 
Sbjct: 768 LLIAARIVELLGRRGWEALKY---LWNLLQY--------WSQELKNSAISLLNTTAIVVG 816

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGL 113
           +  +RI      + + I+++   +R GL
Sbjct: 817 EGTDRIIEALQRAGRAILNIPRRIRQGL 844


>gi|222428535|gb|ACM50158.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 874

 Score = 37.1 bits (85), Expect = 0.81,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 15/88 (17%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y    W +             QE+K + +S+     + V 
Sbjct: 793 LLIAARIVELLGRRGWEALKY---WWSLLQY--------WSQELKNSAVSLLNATAIAVA 841

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGL 113
           +  +RI      +++ II + + +R GL
Sbjct: 842 EGTDRIIEVAQRAFRAIIHIPTRIRQGL 869


>gi|239948270|ref|ZP_04700023.1| tetratricopeptide repeat-containing protein [Rickettsia
           endosymbiont of Ixodes scapularis]
 gi|239922546|gb|EER22570.1| tetratricopeptide repeat-containing protein [Rickettsia
           endosymbiont of Ixodes scapularis]
          Length = 689

 Score = 37.1 bits (85), Expect = 0.82,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 40/91 (43%), Gaps = 6/91 (6%)

Query: 3   QYYHETIQ--ESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQ 60
           + Y++ +Q  +     +K +H +  R  + +S A   L N+K   EAL Y  +   +FI 
Sbjct: 515 EAYNQVMQLYDMHKPVKKEDHEVFGRIFTQMSRAQLGLGNAK---EALDYARKARTIFIN 571

Query: 61  DLVSEDNHLPQEVKLNLISIGLWVLKECERI 91
           D    +N     V  ++  +    + E + +
Sbjct: 572 DPSRPNNSRDIAVSPDI-YLAKACVAEADAL 601


>gi|317407990|gb|ADV17528.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 849

 Score = 37.1 bits (85), Expect = 0.83,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 15/88 (17%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y   +W +             QE+K + IS+     + V 
Sbjct: 768 LLIAARIVELLGRRGWEALKY---LWNLLQY--------WSQELKNSAISLLNTTAIVVG 816

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGL 113
           +  +RI      + + I+++   +R GL
Sbjct: 817 EGTDRIIEALQRAGRAILNIPRRIRQGL 844


>gi|307728681|ref|YP_003905905.1| glycoside hydrolase 15-related protein [Burkholderia sp. CCGE1003]
 gi|307583216|gb|ADN56614.1| glycoside hydrolase 15-related protein [Burkholderia sp. CCGE1003]
          Length = 591

 Score = 37.1 bits (85), Expect = 0.83,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 25/68 (36%)

Query: 32  SIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERI 91
             AH + P       AL  T R W  +I          PQ V+ +L+++   + +    I
Sbjct: 180 KRAHHAAPQPLDVQHALDETQRFWRNWIDSFDDSRTAWPQAVRRSLLTLKALMHRRTGAI 239

Query: 92  RRNKSNSY 99
               + S 
Sbjct: 240 VAAPTTSL 247


>gi|109828537|sp|Q9QBY2|ENV_HV196 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env
           polyprotein; Contains: RecName: Full=Surface protein
           gp120; Short=SU; AltName: Full=Glycoprotein 120;
           Short=gp120; Contains: RecName: Full=Transmembrane
           protein gp41; Short=TM; AltName: Full=Glycoprotein 41;
           Short=gp41; Flags: Precursor
          Length = 842

 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 35/97 (36%), Gaps = 21/97 (21%)

Query: 21  HWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI 80
             ++     +L          +   EAL Y   +W +             QE+K + IS+
Sbjct: 758 RNLILIVTRILER------GLRGGWEALKY---LWNLVQY--------WSQELKNSAISL 800

Query: 81  ----GLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
                + V    +RI      +++ ++ +   +R GL
Sbjct: 801 LNTTAIAVAGGTDRIIEIGQRAFRALLHIPRRIRQGL 837


>gi|6093159|emb|CAB58990.1| ENV protein [Human immunodeficiency virus 1]
          Length = 850

 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 35/97 (36%), Gaps = 21/97 (21%)

Query: 21  HWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI 80
             ++     +L          +   EAL Y   +W +             QE+K + IS+
Sbjct: 766 RNLILIVTRILER------GLRGGWEALKY---LWNLVQY--------WSQELKNSAISL 808

Query: 81  ----GLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
                + V    +RI      +++ ++ +   +R GL
Sbjct: 809 LNTTAIAVAGGTDRIIEIGQRAFRALLHIPRRIRQGL 845


>gi|282761919|gb|ADA84560.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 864

 Score = 36.3 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 15/87 (17%)

Query: 31  LSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVLK 86
           L +A       +   EAL Y   +W +             QE+K + IS+     + V +
Sbjct: 784 LIVARIVNRGLRGGWEALKY---LWNIIQY--------WSQELKNSAISLFNATAIAVAE 832

Query: 87  ECERIRRNKSNSYQDIIDVISIVRDGL 113
             +RI      + + I+++   +R GL
Sbjct: 833 GTDRIIEALQKAGRAILNIPRRIRQGL 859


>gi|269961613|ref|ZP_06175975.1| flagellar protein FliS [Vibrio harveyi 1DA3]
 gi|269833654|gb|EEZ87751.1| flagellar protein FliS [Vibrio harveyi 1DA3]
          Length = 136

 Score = 36.3 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 40/113 (35%), Gaps = 9/113 (7%)

Query: 3   QYYHETI---QESSIECRKREHWILDRSISLLSI--AHKSLPNSKQAVEALFYTSRVWVV 57
           Q Y +     Q S+    K    ++  +I  L    A     N     E L     + + 
Sbjct: 6   QAYKKVSVDSQLSAASPHKVIQMLMAGAIERLIQGKAAMQAGNIPAKGERLGKALDIIIA 65

Query: 58  FIQDLVSEDNHLPQEVKLNLISIGLWVLKECERI-RRNKSNSYQDIIDVISIV 109
               L  +D     ++  NL S+  +++ +      +N      D+ID+I  +
Sbjct: 66  LRSCLSMDDGG---DIASNLDSLYEFMITQISAANHQNDPQPIDDVIDIIREI 115


>gi|156602277|gb|ABU87036.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 863

 Score = 36.3 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 36/86 (41%), Gaps = 15/86 (17%)

Query: 31  LSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVLK 86
           L  A       ++  EAL Y   +W + +  +        QE+K + IS+     + V +
Sbjct: 783 LIAARTVGLLGRRGWEALKY---LWNLLLYWI--------QELKNSAISLLNTTAIAVAE 831

Query: 87  ECERIRRNKSNSYQDIIDVISIVRDG 112
             +R+      + + ++++   +R G
Sbjct: 832 ATDRVMDIVQRTIRAVLNIPRRIRQG 857


>gi|222428545|gb|ACM50166.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 867

 Score = 36.3 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 15/87 (17%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL +        ++  EAL Y   +W +    +        QE+K + IS+     + V 
Sbjct: 786 LLIVTRTVELLGRRGWEALKY---LWNLLQYWI--------QELKNSAISLLNATAIAVA 834

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDG 112
           +  +RI      +++ II +   +R G
Sbjct: 835 EGTDRILEGLQRAFRAIIHIPRRIRQG 861


>gi|116518678|gb|ABJ99563.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 867

 Score = 36.3 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 15/87 (17%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL +        ++  EAL Y   +W +    +        QE+K + IS+     + V 
Sbjct: 786 LLIVTRTVELLGRRGWEALKY---LWNLLQYWI--------QELKNSAISLLNATAIAVA 834

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDG 112
           +  +RI      +++ II +   +R G
Sbjct: 835 EGTDRILEGLQRAFRAIIHIPRRIRQG 861


>gi|296201235|ref|XP_002806838.1| PREDICTED: LOW QUALITY PROTEIN: dynein heavy chain 9, axonemal-like
            [Callithrix jacchus]
          Length = 4478

 Score = 36.3 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 20/63 (31%), Gaps = 2/63 (3%)

Query: 21   HWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSE--DNHLPQEVKLNLI 78
               L R+ + L+ A + L   K  +  L           +   ++        EV    I
Sbjct: 3278 RQALSRATADLTAAQEKLAAIKAKIAHLNENLAKLTAKFEKATADKLKCQQEAEVTAGTI 3337

Query: 79   SIG 81
            S+ 
Sbjct: 3338 SLA 3340


>gi|59710072|gb|AAW88565.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 837

 Score = 36.3 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 15/88 (17%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL +A       ++  EAL Y   +W +    +        QE+K + IS+     + V 
Sbjct: 756 LLIVARTLELLGRRGWEALKY---LWSLLQYWI--------QELKNSAISLLNATAIAVA 804

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGL 113
           +  +R+      +Y+ I+++ + +R GL
Sbjct: 805 EGTDRVIEIVQRAYRAILNIPTRIRQGL 832


>gi|73955910|ref|XP_863527.1| PREDICTED: similar to dynein, axonemal, heavy polypeptide 9 isoform 2
            isoform 2 [Canis familiaris]
          Length = 4359

 Score = 35.9 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 20/63 (31%), Gaps = 2/63 (3%)

Query: 21   HWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSE--DNHLPQEVKLNLI 78
               L R+ S L+ A + L   K  +  L           +   ++        EV    I
Sbjct: 3159 RQALSRATSDLTAAQEKLAAVKAKIAHLNENLAKLTAKFEKATADKLKCQQEAEVTAGTI 3218

Query: 79   SIG 81
            S+ 
Sbjct: 3219 SLA 3221


>gi|298199679|gb|ADI59774.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 856

 Score = 35.9 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 37/87 (42%), Gaps = 15/87 (17%)

Query: 31  LSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVLK 86
           L  A       ++  EA+ Y   +W +    +        QE+K +++S+     + V +
Sbjct: 776 LIAARIVELLGRRGWEAIKY---LWNILQYWI--------QELKNSVVSLFNATAIXVAE 824

Query: 87  ECERIRRNKSNSYQDIIDVISIVRDGL 113
             +RI      +++ I ++   +R GL
Sbjct: 825 GTDRIIEAIQAAFRAIXNIPRRIRQGL 851


>gi|323975220|gb|EGB70324.1| hypothetical protein ERFG_03922 [Escherichia coli TW10509]
          Length = 249

 Score = 35.9 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 9/73 (12%)

Query: 31  LSIAHKSLPNSKQAVEALFY-TSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECE 89
           L  A +   +        F     +W+    D        P E +  LI++   VLK   
Sbjct: 105 LQRATRGFHSPHALDNHTFSSNESLWISKQND--------PNEARAQLITLRRSVLKLTG 156

Query: 90  RIRRNKSNSYQDI 102
            +  +     Q +
Sbjct: 157 DVLNDDPRDLQLL 169


>gi|73955908|ref|XP_851319.1| PREDICTED: similar to dynein, axonemal, heavy polypeptide 9 isoform 2
            isoform 1 [Canis familiaris]
          Length = 4489

 Score = 35.9 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 20/63 (31%), Gaps = 2/63 (3%)

Query: 21   HWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSE--DNHLPQEVKLNLI 78
               L R+ S L+ A + L   K  +  L           +   ++        EV    I
Sbjct: 3289 RQALSRATSDLTAAQEKLAAVKAKIAHLNENLAKLTAKFEKATADKLKCQQEAEVTAGTI 3348

Query: 79   SIG 81
            S+ 
Sbjct: 3349 SLA 3351


>gi|312884917|ref|ZP_07744607.1| flagellar protein FliS [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309367394|gb|EFP94956.1| flagellar protein FliS [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 136

 Score = 35.9 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/117 (14%), Positives = 39/117 (33%), Gaps = 17/117 (14%)

Query: 3   QYYHETI---QESSIECRKREHWILDRSISLLSIAHKS------LPNSKQAVEALFYTSR 53
           Q Y +     Q S+    K    ++  +I  L     +          ++  +AL     
Sbjct: 6   QAYKKVSVDSQLSAASPHKIVQMLMAGAIERLIQGKAAMEAGNIPKKGERLGKALDIVIS 65

Query: 54  VWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKE-CERIRRNKSNSYQDIIDVISIV 109
           +      D   +       +  NL  +  +++ +  E   +N      D+I++I  +
Sbjct: 66  LRSCLSMDDGGD-------IAQNLDQLYEFMITQITEANHKNDPQPIDDVIEIIREI 115


>gi|301787127|ref|XP_002928979.1| PREDICTED: dynein heavy chain 9, axonemal-like, partial [Ailuropoda
            melanoleuca]
          Length = 3310

 Score = 35.9 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 4/68 (5%)

Query: 18   KRE--HWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSE--DNHLPQEV 73
            + E     L R+ S L+ A + L   K  +  L           +   ++        EV
Sbjct: 2162 EVEPKRQALSRATSDLTAAQEKLAAIKAKIAHLNENLAKLTAKFEKATADKLKCQQEAEV 2221

Query: 74   KLNLISIG 81
                IS+ 
Sbjct: 2222 TAGTISLA 2229


>gi|28899028|ref|NP_798633.1| flagellar protein FliS [Vibrio parahaemolyticus RIMD 2210633]
 gi|153834159|ref|ZP_01986826.1| flagellar protein FliS [Vibrio harveyi HY01]
 gi|153836938|ref|ZP_01989605.1| flagellar protein FliS [Vibrio parahaemolyticus AQ3810]
 gi|260365226|ref|ZP_05777783.1| flagellar protein FliS [Vibrio parahaemolyticus K5030]
 gi|260878776|ref|ZP_05891131.1| flagellar protein FliS [Vibrio parahaemolyticus AN-5034]
 gi|260897371|ref|ZP_05905867.1| flagellar protein FliS [Vibrio parahaemolyticus Peru-466]
 gi|260899930|ref|ZP_05908325.1| flagellar protein FliS [Vibrio parahaemolyticus AQ4037]
 gi|1254205|gb|AAC27805.1| essential polar flagellar protein [Vibrio parahaemolyticus]
 gi|28807247|dbj|BAC60517.1| polar flagellar protein FlaJ [Vibrio parahaemolyticus RIMD 2210633]
 gi|148869529|gb|EDL68527.1| flagellar protein FliS [Vibrio harveyi HY01]
 gi|149749711|gb|EDM60456.1| flagellar protein FliS [Vibrio parahaemolyticus AQ3810]
 gi|308088254|gb|EFO37949.1| flagellar protein FliS [Vibrio parahaemolyticus Peru-466]
 gi|308094208|gb|EFO43903.1| flagellar protein FliS [Vibrio parahaemolyticus AN-5034]
 gi|308107349|gb|EFO44889.1| flagellar protein FliS [Vibrio parahaemolyticus AQ4037]
 gi|308115435|gb|EFO52975.1| flagellar protein FliS [Vibrio parahaemolyticus K5030]
 gi|328474435|gb|EGF45240.1| flagellar protein FliS [Vibrio parahaemolyticus 10329]
          Length = 136

 Score = 35.9 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 9/113 (7%)

Query: 3   QYYHETI---QESSIECRKREHWILDRSISLLSI--AHKSLPNSKQAVEALFYTSRVWVV 57
           Q Y +     Q S+    K    ++  +I  L    A     N     E L     + + 
Sbjct: 6   QAYKKVSVDSQLSAASPHKVIQMLMAGAIERLIQGKAAMQAGNIPAKGERLGKALDIIIA 65

Query: 58  FIQDLVSEDNHLPQEVKLNLISIGLWVLKECERI-RRNKSNSYQDIIDVISIV 109
               L  ED     ++  NL S+  +++ +      +N      D+ID+I  +
Sbjct: 66  LRSCLSMEDGG---DIASNLDSLYEFMITQISAANHQNDPQPIDDVIDIIREI 115


>gi|323965780|gb|EGB61231.1| hypothetical protein ERJG_02852 [Escherichia coli M863]
 gi|327250864|gb|EGE62566.1| hypothetical protein ECSTEC7V_4407 [Escherichia coli STEC_7v]
          Length = 249

 Score = 35.9 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 9/73 (12%)

Query: 31  LSIAHKSLPNSKQAVEALFY-TSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECE 89
           L  A +   +        F     +W+    D        P E +  LI++   VLK   
Sbjct: 105 LQRATRGFHSPHALDNHTFSSNESLWISKQND--------PNEARAQLITLRRSVLKLTG 156

Query: 90  RIRRNKSNSYQDI 102
            +  +     Q +
Sbjct: 157 DVLNDDPRDLQLL 169


>gi|163801840|ref|ZP_02195737.1| flagellar protein FliS [Vibrio sp. AND4]
 gi|159174348|gb|EDP59152.1| flagellar protein FliS [Vibrio sp. AND4]
          Length = 136

 Score = 35.9 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 40/113 (35%), Gaps = 9/113 (7%)

Query: 3   QYYHETI---QESSIECRKREHWILDRSISLLSI--AHKSLPNSKQAVEALFYTSRVWVV 57
           Q Y +     Q S+    K    ++  +I  L    A     N     E L     + + 
Sbjct: 6   QAYKKVSVDSQLSAASPHKVIQMLMAGAIERLIQGKAAMQAGNIPAKGERLGKALDIIIA 65

Query: 58  FIQDLVSEDNHLPQEVKLNLISIGLWVLKECERI-RRNKSNSYQDIIDVISIV 109
               L  +D     ++  NL S+  +++ +      +N      D+ID+I  +
Sbjct: 66  LRSCLSMDDGG---DIASNLDSLYEFMITQISTANHQNDPKPIDDVIDIIREI 115


>gi|332227394|ref|XP_003262879.1| PREDICTED: dynein heavy chain 9, axonemal-like [Nomascus
           leucogenys]
          Length = 250

 Score = 35.9 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 20/63 (31%), Gaps = 2/63 (3%)

Query: 21  HWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSE--DNHLPQEVKLNLI 78
              L R+ + L+ A + L   K  +  L           +   ++        EV    I
Sbjct: 94  RQALSRATADLTAAQEKLAAIKAKIAHLNENLAKLTARFEKATADKLKCQQEAEVTAGTI 153

Query: 79  SIG 81
           S+ 
Sbjct: 154 SLA 156


>gi|119442|sp|P18799|ENV_HV1ND RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env
           polyprotein; Contains: RecName: Full=Surface protein
           gp120; Short=SU; AltName: Full=Glycoprotein 120;
           Short=gp120; Contains: RecName: Full=Transmembrane
           protein gp41; Short=TM; AltName: Full=Glycoprotein 41;
           Short=gp41; Flags: Precursor
 gi|328162|gb|AAA44873.1| env polyprotein [Human immunodeficiency virus 1]
          Length = 846

 Score = 35.6 bits (81), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 15/87 (17%)

Query: 31  LSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLN----LISIGLWVLK 86
           L  A       ++  EAL Y   +W +             QE++ +    L +I + V +
Sbjct: 766 LIAARIVELLGRRGWEALKY---LWNLLQY--------WSQELRNSASSLLDTIAIAVAE 814

Query: 87  ECERIRRNKSNSYQDIIDVISIVRDGL 113
             +R+      + + I++V   +R GL
Sbjct: 815 RTDRVIEVVQRACRAILNVPRRIRQGL 841


>gi|297271948|ref|XP_001118299.2| PREDICTED: dynein heavy chain 9, axonemal-like, partial [Macaca
            mulatta]
          Length = 2536

 Score = 35.6 bits (81), Expect = 2.4,   Method: Composition-based stats.
 Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 2/63 (3%)

Query: 21   HWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSE--DNHLPQEVKLNLI 78
               L ++ + L+ A + L   K  +  L           +   ++        EV  + I
Sbjct: 1336 RQALSKATADLTAAQEKLAAIKAKIAHLNENLAKLTARFEKATADKLKCQQEAEVTASTI 1395

Query: 79   SIG 81
            S+ 
Sbjct: 1396 SLA 1398


>gi|311268434|ref|XP_003132053.1| PREDICTED: dynein heavy chain 9, axonemal-like [Sus scrofa]
          Length = 385

 Score = 35.6 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 20/63 (31%), Gaps = 2/63 (3%)

Query: 21  HWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSE--DNHLPQEVKLNLI 78
              L ++ S L+ A + L   K  +  L           +   ++        EV    I
Sbjct: 219 RQALSKATSDLTAAQEKLAAVKAKIAHLNENLAKLTAKFEKATADKLKCQQEAEVTAGTI 278

Query: 79  SIG 81
           S+ 
Sbjct: 279 SLA 281


>gi|312948279|gb|ADR29106.1| putative phosphopantetheinyl transferase [Escherichia coli O83:H1
           str. NRG 857C]
          Length = 249

 Score = 35.2 bits (80), Expect = 3.0,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 9/73 (12%)

Query: 31  LSIAHKSLPNSKQAVEALFY-TSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECE 89
           L  A +   +        F     +W+    D        P E +  LI++   VLK  +
Sbjct: 105 LQRATRGFHSPHAPDNHTFSSNESLWISKQND--------PNEARAQLITLRRSVLKLTD 156

Query: 90  RIRRNKSNSYQDI 102
            +  +     Q +
Sbjct: 157 DVLNDDPRDLQLL 169


>gi|258623959|ref|ZP_05718912.1| hypothetical protein VMB_02130 [Vibrio mimicus VM603]
 gi|258583753|gb|EEW08549.1| hypothetical protein VMB_02130 [Vibrio mimicus VM603]
          Length = 442

 Score = 35.2 bits (80), Expect = 3.1,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 8/79 (10%)

Query: 29  SLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNL----ISIGLWV 84
            LL IA    P+  + ++AL +T R W   I+  V E++ L   +   L     S+  W 
Sbjct: 31  GLLIIASS--PDQDELLQALHHTRRYWSWLIK--VEEESALSGLLSDGLWEAETSLSEWH 86

Query: 85  LKECERIRRNKSNSYQDII 103
             +      +  N    ++
Sbjct: 87  ELQRRLALFHDPNDCDPLL 105


>gi|222035426|emb|CAP78171.1| Uncharacterized protein yieE [Escherichia coli LF82]
          Length = 253

 Score = 35.2 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 9/73 (12%)

Query: 31  LSIAHKSLPNSKQAVEALFY-TSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECE 89
           L  A +   +        F     +W+    D        P E +  LI++   VLK  +
Sbjct: 109 LQRATRGFHSPHAPDNHTFSSNESLWISKQND--------PNEARAQLITLRRSVLKLTD 160

Query: 90  RIRRNKSNSYQDI 102
            +  +     Q +
Sbjct: 161 DVLNDDPRDLQLL 173


>gi|26251225|ref|NP_757265.1| hypothetical protein c5419 [Escherichia coli CFT073]
 gi|26111658|gb|AAN83839.1|AE016772_17 Hypothetical protein yjiN [Escherichia coli CFT073]
          Length = 438

 Score = 35.2 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)

Query: 21  HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
               DR+   L    K+ P      +A+         +      +W    + L ++ N  
Sbjct: 270 RHAFDRATLALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 329

Query: 70  PQEVKLNLISIGLW 83
              VK  +   G W
Sbjct: 330 DSRVKERIARAGQW 343


>gi|170279728|gb|ACB11844.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 345

 Score = 35.2 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 15/88 (17%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y   +W +             QE++ + IS+     + V 
Sbjct: 264 LLIAARIVELLGRRGWEALKY---LWNLLQY--------WSQELRNSAISLLNTTAIAVA 312

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGL 113
           +  +RI       ++ I ++   +R GL
Sbjct: 313 EGTDRIIEVLQRIFRAICNIPRRIRQGL 340


>gi|15804914|ref|NP_290955.1| hypothetical protein Z5938 [Escherichia coli O157:H7 EDL933]
 gi|15834553|ref|NP_313326.1| hypothetical protein ECs5299 [Escherichia coli O157:H7 str. Sakai]
 gi|168749498|ref|ZP_02774520.1| putative membrane protein [Escherichia coli O157:H7 str. EC4113]
 gi|168754911|ref|ZP_02779918.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4401]
 gi|168760588|ref|ZP_02785595.1| putative membrane protein [Escherichia coli O157:H7 str. EC4501]
 gi|168766621|ref|ZP_02791628.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4486]
 gi|168773948|ref|ZP_02798955.1| putative membrane protein [Escherichia coli O157:H7 str. EC4196]
 gi|168781630|ref|ZP_02806637.1| putative membrane protein [Escherichia coli O157:H7 str. EC4076]
 gi|168784984|ref|ZP_02809991.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC869]
 gi|168797913|ref|ZP_02822920.1| putative membrane protein [Escherichia coli O157:H7 str. EC508]
 gi|195937351|ref|ZP_03082733.1| hypothetical protein EscherichcoliO157_13015 [Escherichia coli
           O157:H7 str. EC4024]
 gi|208805722|ref|ZP_03248059.1| putative membrane protein [Escherichia coli O157:H7 str. EC4206]
 gi|208813284|ref|ZP_03254613.1| putative membrane protein [Escherichia coli O157:H7 str. EC4045]
 gi|208819235|ref|ZP_03259555.1| putative membrane protein [Escherichia coli O157:H7 str. EC4042]
 gi|209400166|ref|YP_002273864.1| hypothetical protein ECH74115_5850 [Escherichia coli O157:H7 str.
           EC4115]
 gi|217324994|ref|ZP_03441078.1| putative membrane protein [Escherichia coli O157:H7 str. TW14588]
 gi|254796340|ref|YP_003081177.1| inner membrane protein [Escherichia coli O157:H7 str. TW14359]
 gi|261226698|ref|ZP_05940979.1| conserved inner membrane protein [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261256914|ref|ZP_05949447.1| conserved inner membrane protein [Escherichia coli O157:H7 str.
           FRIK966]
 gi|12519355|gb|AAG59521.1|AE005665_3 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|13364777|dbj|BAB38722.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|187770337|gb|EDU34181.1| putative membrane protein [Escherichia coli O157:H7 str. EC4196]
 gi|188016146|gb|EDU54268.1| putative membrane protein [Escherichia coli O157:H7 str. EC4113]
 gi|189000699|gb|EDU69685.1| putative membrane protein [Escherichia coli O157:H7 str. EC4076]
 gi|189357792|gb|EDU76211.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4401]
 gi|189364033|gb|EDU82452.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4486]
 gi|189368870|gb|EDU87286.1| putative membrane protein [Escherichia coli O157:H7 str. EC4501]
 gi|189374844|gb|EDU93260.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC869]
 gi|189379436|gb|EDU97852.1| putative membrane protein [Escherichia coli O157:H7 str. EC508]
 gi|208725523|gb|EDZ75124.1| putative membrane protein [Escherichia coli O157:H7 str. EC4206]
 gi|208734561|gb|EDZ83248.1| putative membrane protein [Escherichia coli O157:H7 str. EC4045]
 gi|208739358|gb|EDZ87040.1| putative membrane protein [Escherichia coli O157:H7 str. EC4042]
 gi|209161566|gb|ACI38999.1| putative membrane protein [Escherichia coli O157:H7 str. EC4115]
 gi|209747336|gb|ACI71975.1| hypothetical protein ECs5299 [Escherichia coli]
 gi|209747338|gb|ACI71976.1| hypothetical protein ECs5299 [Escherichia coli]
 gi|209747340|gb|ACI71977.1| hypothetical protein ECs5299 [Escherichia coli]
 gi|217321215|gb|EEC29639.1| putative  membrane protein [Escherichia coli O157:H7 str. TW14588]
 gi|254595740|gb|ACT75101.1| conserved inner membrane protein [Escherichia coli O157:H7 str.
           TW14359]
 gi|320190544|gb|EFW65194.1| Putative inner membrane protein [Escherichia coli O157:H7 str.
           EC1212]
 gi|326345346|gb|EGD69089.1| Putative inner membrane protein [Escherichia coli O157:H7 str.
           1125]
 gi|326346799|gb|EGD70533.1| Putative inner membrane protein [Escherichia coli O157:H7 str.
           1044]
          Length = 423

 Score = 35.2 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 8/71 (11%)

Query: 21  HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTSRVWVVFIQDLVSEDNHLPQE 72
               DR+   L    K+ P      +A+         + S +W    + L ++ N     
Sbjct: 258 RHAFDRATFALIDKLKNDPEMTARADAVKSYLKEDEAFLSELWGDLREWLKADINSEDSR 317

Query: 73  VKLNLISIGLW 83
           VK  +   G W
Sbjct: 318 VKERIARAGQW 328


>gi|254506859|ref|ZP_05118998.1| flagellar protein FliS [Vibrio parahaemolyticus 16]
 gi|219550144|gb|EED27130.1| flagellar protein FliS [Vibrio parahaemolyticus 16]
          Length = 136

 Score = 34.8 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 39/117 (33%), Gaps = 17/117 (14%)

Query: 3   QYYHETI---QESSIECRKREHWILDRSISLLSIAHKS------LPNSKQAVEALFYTSR 53
           Q Y +     Q S+    K    ++  +I  L     +          ++  +AL     
Sbjct: 6   QAYKKVSVDSQLSAASPHKIVQMLMAGAIERLIQGKAAMEQGNIPVKGERLGKALDIIIS 65

Query: 54  VWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKE-CERIRRNKSNSYQDIIDVISIV 109
           +      D   +       +  NL  +  +++ +  E   +N      D+ID+I  +
Sbjct: 66  LRSCLSMDDGGD-------IAQNLDQLYEFMITQITEANHQNNPAKIDDVIDIIREI 115


>gi|323491441|ref|ZP_08096625.1| flagellar protein FliS [Vibrio brasiliensis LMG 20546]
 gi|323314310|gb|EGA67390.1| flagellar protein FliS [Vibrio brasiliensis LMG 20546]
          Length = 136

 Score = 34.8 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 17/117 (14%), Positives = 39/117 (33%), Gaps = 17/117 (14%)

Query: 3   QYYHETI---QESSIECRKREHWILDRSISLLSIAHKS------LPNSKQAVEALFYTSR 53
           Q Y +     Q S+    K    ++  +I  L     +          ++  +AL     
Sbjct: 6   QAYKKVSVDSQLSAASPHKIVQMLMAGAIERLIQGKAAMQAGNIPVKGERLGKALDIIIS 65

Query: 54  VWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKE-CERIRRNKSNSYQDIIDVISIV 109
           +      D   +       +  NL  +  +++ +  E   +N      D+I++I  +
Sbjct: 66  LRSCLSMDDGGD-------IAQNLDQLYEFMITQITEANHQNNPQPIDDVIEIIREI 115


>gi|320638723|gb|EFX08381.1| conserved inner membrane protein [Escherichia coli O157:H7 str.
           G5101]
          Length = 423

 Score = 34.8 bits (79), Expect = 3.9,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 8/71 (11%)

Query: 21  HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTSRVWVVFIQDLVSEDNHLPQE 72
               DR+   L    K+ P      +A+         + S +W    + L ++ N     
Sbjct: 258 RHAFDRATFALIDKLKNDPEMTARADAVKSYLKEDEAFLSELWGDLREWLKADINSEDSR 317

Query: 73  VKLNLISIGLW 83
           VK  +   G W
Sbjct: 318 VKERIARAGQW 328


>gi|227885173|ref|ZP_04002978.1| membrane protein [Escherichia coli 83972]
 gi|300980678|ref|ZP_07175145.1| conserved domain protein [Escherichia coli MS 45-1]
 gi|301048300|ref|ZP_07195333.1| conserved domain protein [Escherichia coli MS 185-1]
 gi|227838002|gb|EEJ48468.1| membrane protein [Escherichia coli 83972]
 gi|300299860|gb|EFJ56245.1| conserved domain protein [Escherichia coli MS 185-1]
 gi|300409205|gb|EFJ92743.1| conserved domain protein [Escherichia coli MS 45-1]
 gi|307556575|gb|ADN49350.1| conserved inner membrane protein [Escherichia coli ABU 83972]
 gi|315293258|gb|EFU52610.1| conserved domain protein [Escherichia coli MS 153-1]
          Length = 426

 Score = 34.8 bits (79), Expect = 4.0,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)

Query: 21  HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
               DR+   L    K+ P      +A+         +      +W    + L ++ N  
Sbjct: 258 RHAFDRATLALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317

Query: 70  PQEVKLNLISIGLW 83
              VK  +   G W
Sbjct: 318 DSRVKERIARAGQW 331


>gi|52420935|emb|CAH55814.1| hypothetical protein [Escherichia coli]
          Length = 426

 Score = 34.8 bits (79), Expect = 4.1,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)

Query: 21  HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
               DR+   L    K+ P      +A+         +      +W    + L ++ N  
Sbjct: 258 RHAFDRATLALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317

Query: 70  PQEVKLNLISIGLW 83
              VK  +   G W
Sbjct: 318 DSRVKERIARAGQW 331


>gi|83310456|ref|YP_420720.1| hypothetical protein amb1357 [Magnetospirillum magneticum AMB-1]
 gi|82945297|dbj|BAE50161.1| hypothetical protein [Magnetospirillum magneticum AMB-1]
          Length = 159

 Score = 34.8 bits (79), Expect = 4.2,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 26/94 (27%), Gaps = 10/94 (10%)

Query: 18  KREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNL 77
           +     LD +   L  A  +       ++AL    RVW        +     P       
Sbjct: 33  ETGALALDEAAQELDRACDTAS----FLKALERNQRVWRTLAHIAAARAWQFPS---QRQ 85

Query: 78  ISIGLWVLKECERIRRNKSNSYQDIIDVISIVRD 111
           ++  L   +               +ID+   V D
Sbjct: 86  VAYALSTDEHGNGA---NDERVNTLIDINREVSD 116


>gi|284165633|ref|YP_003403912.1| aldehyde ferredoxin oxidoreductase [Haloterrigena turkmenica DSM
           5511]
 gi|284015288|gb|ADB61239.1| Aldehyde ferredoxin oxidoreductase [Haloterrigena turkmenica DSM
           5511]
          Length = 614

 Score = 34.8 bits (79), Expect = 4.2,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 40/125 (32%), Gaps = 33/125 (26%)

Query: 9   IQESSIECRKREHWILDRSIS------------LLSIAHKSLPNSKQAVEALF--YTSR- 53
           +  SS + R  E   L  + S                  ++ P+ +  V A+      R 
Sbjct: 402 MDYSSYDPRGAETMALAYATSDRGACHRRARPVESEAVGRAWPDDRARVAAVAGEQNRRA 461

Query: 54  -VWVVFIQDLVSEDNHLPQEV-------------KLNLISIG--LWVLKECERIRRNKSN 97
            +W +   D + +   L +++             + +L + G  +W L     +R   S 
Sbjct: 462 VLWSLIADDFLED--ALSEDLGAEWLAAVGYDVGRADLATAGERIWTLIRLFNVREGFSR 519

Query: 98  SYQDI 102
               +
Sbjct: 520 EDDAL 524


>gi|291295580|ref|YP_003506978.1| hypothetical protein Mrub_1195 [Meiothermus ruber DSM 1279]
 gi|290470539|gb|ADD27958.1| hypothetical protein Mrub_1195 [Meiothermus ruber DSM 1279]
          Length = 314

 Score = 34.8 bits (79), Expect = 4.2,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 5/71 (7%)

Query: 3   QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDL 62
           Q Y E   E      +RE     +    L+       +    V+ L Y   +W +  + +
Sbjct: 126 QGYGEVFGEGPATGFRRERMA--QVAGRLAALE---GSVAVLVDVLEYPWLLWALPAERV 180

Query: 63  VSEDNHLPQEV 73
           V   +H P E+
Sbjct: 181 VLPGHHTPTEL 191


>gi|300940898|ref|ZP_07155424.1| conserved hypothetical protein [Escherichia coli MS 21-1]
 gi|300454328|gb|EFK17821.1| conserved hypothetical protein [Escherichia coli MS 21-1]
          Length = 253

 Score = 34.8 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 9/73 (12%)

Query: 31  LSIAHKSLPNSKQAVEALFY-TSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECE 89
           L  A +   +   +    F     +W+    D        P E +  LI++   VLK   
Sbjct: 109 LQRATRGFHSPHASDNHTFSSNESLWISKQND--------PNEARAQLITLRRSVLKLTG 160

Query: 90  RIRRNKSNSYQDI 102
            +  +     Q +
Sbjct: 161 DVLNDDPRDLQLL 173


>gi|325498700|gb|EGC96559.1| hypothetical protein ECD227_2797 [Escherichia fergusonii ECD227]
          Length = 414

 Score = 34.8 bits (79), Expect = 4.5,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)

Query: 21  HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
               DR+   L    K+ P      +A+         +      +W    + L ++ N  
Sbjct: 246 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 305

Query: 70  PQEVKLNLISIGLW 83
              VK  +   G W
Sbjct: 306 DSRVKERIARAGQW 319


>gi|300926432|ref|ZP_07142228.1| conserved domain protein [Escherichia coli MS 182-1]
 gi|300417539|gb|EFK00850.1| conserved domain protein [Escherichia coli MS 182-1]
          Length = 426

 Score = 34.8 bits (79), Expect = 4.5,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)

Query: 21  HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
               DR+   L    K+ P      +A+         +      +W    + L ++ N  
Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAIKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317

Query: 70  PQEVKLNLISIGLW 83
              VK  +   G W
Sbjct: 318 DSRVKERIARAGQW 331


>gi|189010086|ref|ZP_02804946.2| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4076]
 gi|189401809|ref|ZP_02778613.2| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4401]
 gi|189405695|ref|ZP_02823759.2| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC508]
 gi|208807262|ref|ZP_03249599.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4206]
 gi|189002295|gb|EDU71281.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4076]
 gi|189358906|gb|EDU77325.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4401]
 gi|189378705|gb|EDU97121.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC508]
 gi|208727063|gb|EDZ76664.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4206]
          Length = 198

 Score = 34.8 bits (79), Expect = 4.5,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 23/73 (31%), Gaps = 9/73 (12%)

Query: 31  LSIAHKSLPNSKQAVEALFY-TSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECE 89
           L  A +   +        F     +WV    D        P E +  LI++   VLK   
Sbjct: 54  LQRATRGFHSPHAPDNHTFSSNESLWVSKQND--------PNEARAQLITLRRSVLKLTG 105

Query: 90  RIRRNKSNSYQDI 102
            +  +     Q +
Sbjct: 106 DVLNDDPRDLQLL 118


>gi|283788348|ref|YP_003368213.1| hypothetical protein ROD_48251 [Citrobacter rodentium ICC168]
 gi|282951802|emb|CBG91512.1| putative membrane protein [Citrobacter rodentium ICC168]
          Length = 423

 Score = 34.8 bits (79), Expect = 4.5,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 25/74 (33%), Gaps = 11/74 (14%)

Query: 21  HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
               DR+   L    KS P+     E++         +      +W    Q L ++ N  
Sbjct: 258 RHAFDRATFRLIDKLKSDPDMAARAESIKDYLKEDETFNRYLGELWDDLRQWLKNDINAD 317

Query: 70  PQEVKLNLISIGLW 83
              VK  + + G W
Sbjct: 318 DSRVKQRIANAGQW 331


>gi|261252317|ref|ZP_05944890.1| flagellar biosynthesis protein FliS [Vibrio orientalis CIP 102891]
 gi|260935708|gb|EEX91697.1| flagellar biosynthesis protein FliS [Vibrio orientalis CIP 102891]
          Length = 136

 Score = 34.8 bits (79), Expect = 4.5,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 39/117 (33%), Gaps = 17/117 (14%)

Query: 3   QYYHETI---QESSIECRKREHWILDRSISLLSIAHKS------LPNSKQAVEALFYTSR 53
           Q Y +     Q S+    K    ++  +I  L     +          ++  +AL     
Sbjct: 6   QAYKKVSVDSQLSAASPHKIVQMLMAGAIERLIQGKAAMQAGNIPMKGERLGKALDIIIS 65

Query: 54  VWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKE-CERIRRNKSNSYQDIIDVISIV 109
           +      D   +       +  NL  +  +++ +  E   +N      D+ID+I  +
Sbjct: 66  LRSCLSMDDGGD-------IAQNLDQLYEFMITQITEANHQNNPQPIDDVIDIIREI 115


>gi|332087028|gb|EGI92162.1| hypothetical protein SB359474_5053 [Shigella boydii 3594-74]
          Length = 415

 Score = 34.8 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)

Query: 21  HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
               DR+   L    K+ P      +A+         +      +W    + L ++ N  
Sbjct: 247 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 306

Query: 70  PQEVKLNLISIGLW 83
              VK  +   G W
Sbjct: 307 DSRVKERIARAGQW 320


>gi|320179370|gb|EFW54328.1| Putative inner membrane protein [Shigella boydii ATCC 9905]
          Length = 422

 Score = 34.8 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)

Query: 21  HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
               DR+   L    K+ P      +A+         +      +W    + L ++ N  
Sbjct: 254 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 313

Query: 70  PQEVKLNLISIGLW 83
              VK  +   G W
Sbjct: 314 DSRVKERIARAGQW 327


>gi|218702562|ref|YP_002410191.1| putative phosphopantetheinyl transferase [Escherichia coli IAI39]
 gi|218372548|emb|CAR20422.1| putative phosphopantetheinyl transferase [Escherichia coli IAI39]
          Length = 253

 Score = 34.4 bits (78), Expect = 4.9,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 9/73 (12%)

Query: 31  LSIAHKSLPNSKQAVEALFY-TSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECE 89
           L  A +   +        F     +W+    D        P E +  LI++   VLK   
Sbjct: 109 LQRATRGFHSPHAPDNHTFSSNESLWISKQND--------PNETRAQLITLRRSVLKLTG 160

Query: 90  RIRRNKSNSYQDI 102
            +  +     Q +
Sbjct: 161 DVLNDDPRDLQLL 173


>gi|262173960|ref|ZP_06041637.1| hypothetical protein VII_001050 [Vibrio mimicus MB-451]
 gi|261891318|gb|EEY37305.1| hypothetical protein VII_001050 [Vibrio mimicus MB-451]
          Length = 410

 Score = 34.4 bits (78), Expect = 4.9,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 6/72 (8%)

Query: 36  KSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNL----ISIGLWVLKECERI 91
            S P+  + ++AL +T R W   I+  V E++ L   +   L     S+  W   +    
Sbjct: 4   ASSPDQDELLQALHHTRRYWSWLIK--VEEESALSGLLSDGLWEAETSLSEWHELQRRLA 61

Query: 92  RRNKSNSYQDII 103
             +  N    ++
Sbjct: 62  LFHDPNDCDPLL 73


>gi|170279726|gb|ACB11843.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 345

 Score = 34.4 bits (78), Expect = 5.0,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 15/88 (17%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
           LL  A       ++  EAL Y   +W +             QE++ + IS+     + V 
Sbjct: 264 LLIAARIVELLGRRGWEALKY---LWNLLQY--------WSQELRNSAISLLNTTAIAVA 312

Query: 86  KECERIRRNKSNSYQDIIDVISIVRDGL 113
           +  +RI       ++ I ++   +R GL
Sbjct: 313 EGTDRIIEVLQRIFRAICNIPRRIRQGL 340


>gi|260871059|ref|YP_003237461.1| hypothetical protein ECO111_5193 [Escherichia coli O111:H- str.
           11128]
 gi|257767415|dbj|BAI38910.1| conserved predicted inner membrane protein [Escherichia coli
           O111:H- str. 11128]
 gi|323176232|gb|EFZ61824.1| hypothetical protein ECOK1180_4923 [Escherichia coli 1180]
          Length = 426

 Score = 34.4 bits (78), Expect = 5.1,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)

Query: 21  HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
               DR+   L    K+ P      +A+         +      +W    + L ++ N  
Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317

Query: 70  PQEVKLNLISIGLW 83
              VK  +   G W
Sbjct: 318 DSRVKERIARAGQW 331


>gi|84388106|ref|ZP_00991002.1| flagellar protein FliS [Vibrio splendidus 12B01]
 gi|84377173|gb|EAP94043.1| flagellar protein FliS [Vibrio splendidus 12B01]
          Length = 136

 Score = 34.4 bits (78), Expect = 5.1,   Method: Composition-based stats.
 Identities = 16/117 (13%), Positives = 38/117 (32%), Gaps = 17/117 (14%)

Query: 3   QYYHETIQES---SIECRKREHWILDRSISLLSIAHKS------LPNSKQAVEALFYTSR 53
           Q Y +   +S   +    K    ++  +I  L     +          ++  +AL     
Sbjct: 6   QAYKKVSVDSQLTAASPHKIVQMLMAGAIERLIQGKAAMQAGNIPVKGERLGKALDIIIS 65

Query: 54  VWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERI-RRNKSNSYQDIIDVISIV 109
           +      D   +       +  NL  +  +++ +      +N      D+ID+I  +
Sbjct: 66  LRSCLSMDDGGD-------IAKNLDQLYEFMITQISAANHKNDPQPIDDVIDIIREI 115


>gi|331665994|ref|ZP_08366888.1| putative membrane protein [Escherichia coli TA143]
 gi|331057045|gb|EGI29039.1| putative membrane protein [Escherichia coli TA143]
          Length = 426

 Score = 34.4 bits (78), Expect = 5.2,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)

Query: 21  HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
               DR+   L    K+ P      +A+         +      +W    + L ++ N  
Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317

Query: 70  PQEVKLNLISIGLW 83
              VK  +   G W
Sbjct: 318 DSRVKERIARAGQW 331


>gi|156975436|ref|YP_001446343.1| flagellar protein FliS [Vibrio harveyi ATCC BAA-1116]
 gi|156527030|gb|ABU72116.1| hypothetical protein VIBHAR_03167 [Vibrio harveyi ATCC BAA-1116]
          Length = 136

 Score = 34.4 bits (78), Expect = 5.2,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 9/113 (7%)

Query: 3   QYYHETI---QESSIECRKREHWILDRSISLLSI--AHKSLPNSKQAVEALFYTSRVWVV 57
           Q Y +     Q S+    K    ++  +I  L    A     N     E L     + + 
Sbjct: 6   QAYKKVSVDSQLSAASPHKVIQMLMAGAIERLIQGKAAMQAGNIPTKGERLGKALDIIIA 65

Query: 58  FIQDLVSEDNHLPQEVKLNLISIGLWVLKECERI-RRNKSNSYQDIIDVISIV 109
               L  ED     ++  NL S+  +++ +      +N      D+ID+I  +
Sbjct: 66  LRSCLSMEDGG---DIASNLDSLYEFMITQISAANHQNDPQPIDDVIDIIREI 115


>gi|332083312|gb|EGI88543.1| hypothetical protein SB521682_5192 [Shigella boydii 5216-82]
          Length = 426

 Score = 34.4 bits (78), Expect = 5.3,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)

Query: 21  HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
               DR+   L    K+ P      +A+         +      +W    + L ++ N  
Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317

Query: 70  PQEVKLNLISIGLW 83
              VK  +   G W
Sbjct: 318 DSRVKERIARAGQW 331


>gi|157163782|ref|YP_001461100.1| hypothetical protein EcHS_A4564 [Escherichia coli HS]
 gi|300823785|ref|ZP_07103910.1| conserved domain protein [Escherichia coli MS 119-7]
 gi|331680443|ref|ZP_08381102.1| putative membrane protein [Escherichia coli H591]
 gi|157069462|gb|ABV08717.1| putative membrane protein [Escherichia coli HS]
 gi|300523697|gb|EFK44766.1| conserved domain protein [Escherichia coli MS 119-7]
 gi|331071906|gb|EGI43242.1| putative membrane protein [Escherichia coli H591]
          Length = 426

 Score = 34.4 bits (78), Expect = 5.4,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)

Query: 21  HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
               DR+   L    K+ P      +A+         +      +W    + L ++ N  
Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317

Query: 70  PQEVKLNLISIGLW 83
              VK  +   G W
Sbjct: 318 DSRVKERIARAGQW 331


>gi|254037361|ref|ZP_04871438.1| putative membrane protein [Escherichia sp. 1_1_43]
 gi|300916490|ref|ZP_07133226.1| conserved domain protein [Escherichia coli MS 115-1]
 gi|300938248|ref|ZP_07153014.1| conserved domain protein [Escherichia coli MS 21-1]
 gi|300948878|ref|ZP_07162942.1| conserved domain protein [Escherichia coli MS 116-1]
 gi|300954922|ref|ZP_07167341.1| conserved domain protein [Escherichia coli MS 175-1]
 gi|301325222|ref|ZP_07218743.1| conserved domain protein [Escherichia coli MS 78-1]
 gi|226840467|gb|EEH72469.1| putative membrane protein [Escherichia sp. 1_1_43]
 gi|284924528|emb|CBG37666.1| putative membrane protein [Escherichia coli 042]
 gi|300318153|gb|EFJ67937.1| conserved domain protein [Escherichia coli MS 175-1]
 gi|300416217|gb|EFJ99527.1| conserved domain protein [Escherichia coli MS 115-1]
 gi|300451631|gb|EFK15251.1| conserved domain protein [Escherichia coli MS 116-1]
 gi|300456753|gb|EFK20246.1| conserved domain protein [Escherichia coli MS 21-1]
 gi|300847939|gb|EFK75699.1| conserved domain protein [Escherichia coli MS 78-1]
 gi|315616287|gb|EFU96906.1| conserved hypothetical protein [Escherichia coli 3431]
          Length = 426

 Score = 34.4 bits (78), Expect = 5.4,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)

Query: 21  HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
               DR+   L    K+ P      +A+         +      +W    + L ++ N  
Sbjct: 258 RHAFDRATFALIEKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317

Query: 70  PQEVKLNLISIGLW 83
              VK  +   G W
Sbjct: 318 DSRVKERIARAGQW 331


>gi|323935272|gb|EGB31625.1| membrane protein [Escherichia coli E1520]
          Length = 426

 Score = 34.4 bits (78), Expect = 5.5,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)

Query: 21  HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
               DR+   L    K+ P      +A+         +      +W    + L ++ N  
Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317

Query: 70  PQEVKLNLISIGLW 83
              VK  +   G W
Sbjct: 318 DSRVKERIARAGQW 331


>gi|323189811|gb|EFZ75089.1| hypothetical protein ECRN5871_1596 [Escherichia coli RN587/1]
          Length = 426

 Score = 34.4 bits (78), Expect = 5.5,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)

Query: 21  HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
               DR+   L    K+ P      +A+         +      +W    + L ++ N  
Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317

Query: 70  PQEVKLNLISIGLW 83
              VK  +   G W
Sbjct: 318 DSRVKERIARAGQW 331


>gi|300905314|ref|ZP_07123085.1| conserved domain protein [Escherichia coli MS 84-1]
 gi|300402802|gb|EFJ86340.1| conserved domain protein [Escherichia coli MS 84-1]
 gi|315255812|gb|EFU35780.1| conserved domain protein [Escherichia coli MS 85-1]
          Length = 426

 Score = 34.4 bits (78), Expect = 5.5,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)

Query: 21  HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
               DR+   L    K+ P      +A+         +      +W    + L ++ N  
Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317

Query: 70  PQEVKLNLISIGLW 83
              VK  +   G W
Sbjct: 318 DSRVKERIARAGQW 331


>gi|293417805|ref|ZP_06660427.1| yjiN protein [Escherichia coli B185]
 gi|291430523|gb|EFF03521.1| yjiN protein [Escherichia coli B185]
          Length = 426

 Score = 34.4 bits (78), Expect = 5.5,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)

Query: 21  HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
               DR+   L    K+ P      +A+         +      +W    + L ++ N  
Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317

Query: 70  PQEVKLNLISIGLW 83
              VK  +   G W
Sbjct: 318 DSRVKERIARAGQW 331


>gi|188493079|ref|ZP_03000349.1| conserved hypothetical protein [Escherichia coli 53638]
 gi|193063751|ref|ZP_03044839.1| conserved hypothetical protein [Escherichia coli E22]
 gi|260847153|ref|YP_003224931.1| hypothetical protein ECO103_5118 [Escherichia coli O103:H2 str.
           12009]
 gi|260858503|ref|YP_003232394.1| hypothetical protein ECO26_5533 [Escherichia coli O26:H11 str.
           11368]
 gi|300818462|ref|ZP_07098671.1| conserved domain protein [Escherichia coli MS 107-1]
 gi|307313729|ref|ZP_07593348.1| protein of unknown function DUF445 [Escherichia coli W]
 gi|188488278|gb|EDU63381.1| conserved hypothetical protein [Escherichia coli 53638]
 gi|192930738|gb|EDV83344.1| conserved hypothetical protein [Escherichia coli E22]
 gi|257757152|dbj|BAI28654.1| conserved predicted inner membrane protein [Escherichia coli
           O26:H11 str. 11368]
 gi|257762300|dbj|BAI33797.1| conserved predicted inner membrane protein [Escherichia coli
           O103:H2 str. 12009]
 gi|300528866|gb|EFK49928.1| conserved domain protein [Escherichia coli MS 107-1]
 gi|306906552|gb|EFN37065.1| protein of unknown function DUF445 [Escherichia coli W]
 gi|315063640|gb|ADT77967.1| conserved inner membrane protein [Escherichia coli W]
 gi|320200551|gb|EFW75137.1| Putative inner membrane protein [Escherichia coli EC4100B]
 gi|323157634|gb|EFZ43740.1| hypothetical protein ECEPECA14_0488 [Escherichia coli EPECa14]
 gi|323380280|gb|ADX52548.1| protein of unknown function DUF445 [Escherichia coli KO11]
          Length = 426

 Score = 34.4 bits (78), Expect = 5.5,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)

Query: 21  HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
               DR+   L    K+ P      +A+         +      +W    + L ++ N  
Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317

Query: 70  PQEVKLNLISIGLW 83
              VK  +   G W
Sbjct: 318 DSRVKERIARAGQW 331


>gi|323960203|gb|EGB55846.1| membrane protein [Escherichia coli H489]
          Length = 426

 Score = 34.4 bits (78), Expect = 5.7,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)

Query: 21  HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
               DR+   L    K+ P      +A+         +      +W    + L ++ N  
Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317

Query: 70  PQEVKLNLISIGLW 83
              VK  +   G W
Sbjct: 318 DSRVKERIARAGQW 331


>gi|148976408|ref|ZP_01813114.1| flagellar protein FliS [Vibrionales bacterium SWAT-3]
 gi|145964231|gb|EDK29487.1| flagellar protein FliS [Vibrionales bacterium SWAT-3]
          Length = 136

 Score = 34.4 bits (78), Expect = 5.7,   Method: Composition-based stats.
 Identities = 16/117 (13%), Positives = 38/117 (32%), Gaps = 17/117 (14%)

Query: 3   QYYHETIQES---SIECRKREHWILDRSISLLSIAHKS------LPNSKQAVEALFYTSR 53
           Q Y +   +S   +    K    ++  +I  L     +          ++  +AL     
Sbjct: 6   QAYKKVSVDSQLTAASPHKIVQMLMAGAIERLIQGKAAMQAGNIPVKGERLGKALDIIIS 65

Query: 54  VWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERI-RRNKSNSYQDIIDVISIV 109
           +      D   +       +  NL  +  +++ +      +N      D+ID+I  +
Sbjct: 66  LRSCLSMDDGGD-------IAKNLDQLYEFMITQISAANHKNDPQPIDDVIDIIREI 115


>gi|82546683|ref|YP_410630.1| hypothetical protein SBO_4388 [Shigella boydii Sb227]
 gi|187730651|ref|YP_001882917.1| hypothetical protein SbBS512_E4768 [Shigella boydii CDC 3083-94]
 gi|218698181|ref|YP_002405848.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli 55989]
 gi|309795608|ref|ZP_07690024.1| conserved domain protein [Escherichia coli MS 145-7]
 gi|81248094|gb|ABB68802.1| conserved hypothetical protein [Shigella boydii Sb227]
 gi|187427643|gb|ACD06917.1| putatitve membrane protein [Shigella boydii CDC 3083-94]
 gi|218354913|emb|CAV02114.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli 55989]
 gi|308120732|gb|EFO57994.1| conserved domain protein [Escherichia coli MS 145-7]
 gi|320186869|gb|EFW61587.1| Putative inner membrane protein [Shigella flexneri CDC 796-83]
 gi|332346393|gb|AEE59727.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 426

 Score = 34.4 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)

Query: 21  HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
               DR+   L    K+ P      +A+         +      +W    + L ++ N  
Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317

Query: 70  PQEVKLNLISIGLW 83
              VK  +   G W
Sbjct: 318 DSRVKERIARAGQW 331


>gi|331650472|ref|ZP_08351544.1| putative membrane protein [Escherichia coli M605]
 gi|331040866|gb|EGI13024.1| putative membrane protein [Escherichia coli M605]
          Length = 438

 Score = 34.4 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)

Query: 21  HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
               DR+   L    K+ P      +A+         +      +W    + L ++ N  
Sbjct: 270 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 329

Query: 70  PQEVKLNLISIGLW 83
              VK  +   G W
Sbjct: 330 DSRVKERIARAGQW 343


>gi|218692726|ref|YP_002400938.1| hypothetical protein ECED1_5207 [Escherichia coli ED1a]
 gi|218430290|emb|CAR11159.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli ED1a]
          Length = 426

 Score = 34.4 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)

Query: 21  HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
               DR+   L    K+ P      +A+         +      +W    + L ++ N  
Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317

Query: 70  PQEVKLNLISIGLW 83
              VK  +   G W
Sbjct: 318 DSRVKERIARAGQW 331


>gi|323965449|gb|EGB60904.1| membrane protein [Escherichia coli M863]
 gi|327250256|gb|EGE61975.1| hypothetical protein ECSTEC7V_5061 [Escherichia coli STEC_7v]
          Length = 426

 Score = 34.4 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)

Query: 21  HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
               DR+   L    K+ P      +A+         +      +W    + L ++ N  
Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317

Query: 70  PQEVKLNLISIGLW 83
              VK  +   G W
Sbjct: 318 DSRVKERIARAGQW 331


>gi|256019967|ref|ZP_05433832.1| hypothetical protein ShiD9_13687 [Shigella sp. D9]
 gi|332281113|ref|ZP_08393526.1| conserved hypothetical protein [Shigella sp. D9]
 gi|332103465|gb|EGJ06811.1| conserved hypothetical protein [Shigella sp. D9]
          Length = 426

 Score = 34.4 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)

Query: 21  HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
               DR+   L    K+ P      +A+         +      +W    + L ++ N  
Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317

Query: 70  PQEVKLNLISIGLW 83
              VK  +   G W
Sbjct: 318 DSRVKERIARAGQW 331


>gi|168748567|ref|ZP_02773589.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4113]
 gi|168759904|ref|ZP_02784911.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4501]
 gi|168766204|ref|ZP_02791211.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4486]
 gi|168772248|ref|ZP_02797255.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4196]
 gi|168786548|ref|ZP_02811555.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC869]
 gi|195936335|ref|ZP_03081717.1| hypothetical protein EscherichcoliO157_07703 [Escherichia coli
           O157:H7 str. EC4024]
 gi|208814251|ref|ZP_03255580.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4045]
 gi|208818972|ref|ZP_03259292.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4042]
 gi|209398815|ref|YP_002273240.1| hypothetical protein ECH74115_5143 [Escherichia coli O157:H7 str.
           EC4115]
 gi|217325378|ref|ZP_03441462.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           TW14588]
 gi|254795717|ref|YP_003080554.1| putative phosphopantetheinyl transferase [Escherichia coli O157:H7
           str. TW14359]
 gi|261225867|ref|ZP_05940148.1| hypothetical protein EscherichiacoliO157_14878 [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261258912|ref|ZP_05951445.1| hypothetical protein EscherichiacoliO157EcO_24367 [Escherichia coli
           O157:H7 str. FRIK966]
 gi|187771634|gb|EDU35478.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4196]
 gi|188016986|gb|EDU55108.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4113]
 gi|189364644|gb|EDU83063.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4486]
 gi|189369686|gb|EDU88102.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4501]
 gi|189373370|gb|EDU91786.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC869]
 gi|208735528|gb|EDZ84215.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4045]
 gi|208739095|gb|EDZ86777.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4042]
 gi|209160215|gb|ACI37648.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4115]
 gi|217321599|gb|EEC30023.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           TW14588]
 gi|254595117|gb|ACT74478.1| predicted phosphopantetheinyl transferase [Escherichia coli O157:H7
           str. TW14359]
 gi|320191189|gb|EFW65839.1| hypothetical protein ECoD_02610 [Escherichia coli O157:H7 str.
           EC1212]
 gi|320639439|gb|EFX09054.1| hypothetical protein ECO5101_06068 [Escherichia coli O157:H7 str.
           G5101]
 gi|320644880|gb|EFX13916.1| hypothetical protein ECO9389_11975 [Escherichia coli O157:H- str.
           493-89]
 gi|320650146|gb|EFX18642.1| hypothetical protein ECO2687_17425 [Escherichia coli O157:H- str. H
           2687]
 gi|320655494|gb|EFX23429.1| hypothetical protein ECO7815_14622 [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320661119|gb|EFX28555.1| hypothetical protein ECO5905_17658 [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320666246|gb|EFX33252.1| hypothetical protein ECOSU61_05096 [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326337240|gb|EGD61075.1| hypothetical protein ECoA_05288 [Escherichia coli O157:H7 str.
           1044]
 gi|326341611|gb|EGD65400.1| hypothetical protein ECF_03196 [Escherichia coli O157:H7 str. 1125]
          Length = 249

 Score = 34.4 bits (78), Expect = 6.0,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 23/73 (31%), Gaps = 9/73 (12%)

Query: 31  LSIAHKSLPNSKQAVEALFY-TSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECE 89
           L  A +   +        F     +WV    D        P E +  LI++   VLK   
Sbjct: 105 LQRATRGFHSPHAPDNHTFSSNESLWVSKQND--------PNEARAQLITLRRSVLKLTG 156

Query: 90  RIRRNKSNSYQDI 102
            +  +     Q +
Sbjct: 157 DVLNDDPRDLQLL 169


>gi|260767711|ref|ZP_05876646.1| flagellar biosynthesis protein FliS [Vibrio furnissii CIP 102972]
 gi|260617220|gb|EEX42404.1| flagellar biosynthesis protein FliS [Vibrio furnissii CIP 102972]
 gi|315179457|gb|ADT86371.1| flagellar protein FliS [Vibrio furnissii NCTC 11218]
          Length = 136

 Score = 34.4 bits (78), Expect = 6.1,   Method: Composition-based stats.
 Identities = 17/117 (14%), Positives = 39/117 (33%), Gaps = 17/117 (14%)

Query: 3   QYYHETI---QESSIECRKREHWILDRSISLLSIAHKS------LPNSKQAVEALFYTSR 53
           Q Y +     Q S+    K    ++  +I  L     +          ++  +AL     
Sbjct: 6   QAYKKVSVDSQLSAASPHKIVQMLMAGAIERLIQGKAAMMQGNIPAKGERLGKALDIIIS 65

Query: 54  VWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKE-CERIRRNKSNSYQDIIDVISIV 109
           +      D   +       +  NL  +  +++ +      +N+     D+ID+I  +
Sbjct: 66  LRSCLSMDDGGD-------IAQNLDQLYEFMITQITAANHQNEPQLLDDVIDIIREI 115


>gi|332653418|ref|ZP_08419163.1| ATP-dependent nuclease subunit A [Ruminococcaceae bacterium D16]
 gi|332518564|gb|EGJ48167.1| ATP-dependent nuclease subunit A [Ruminococcaceae bacterium D16]
          Length = 1206

 Score = 34.4 bits (78), Expect = 6.1,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 33/90 (36%), Gaps = 5/90 (5%)

Query: 14  IECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEV 73
              R+ E  ++   + LL +A            AL   ++      +D  +  + +  E 
Sbjct: 839 AVSRQLEREMMSEEMRLLYVAMTRAKEKLILTLALTEGAKALERLAEDAAAPVSPVALE- 897

Query: 74  KLNLISIGLWVLKECERIRRNKSNSYQDII 103
           +    S+G W+L     + R +    + ++
Sbjct: 898 RQQ--SVGQWILLH--ALTRPEGEILRTLV 923


>gi|320644436|gb|EFX13501.1| hypothetical protein ECO9389_14788 [Escherichia coli O157:H- str.
           493-89]
 gi|320649754|gb|EFX18278.1| hypothetical protein ECO2687_22384 [Escherichia coli O157:H- str. H
           2687]
          Length = 426

 Score = 34.0 bits (77), Expect = 6.2,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)

Query: 21  HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
               DR+   L    K+ P      +A+         +      +W    + L ++ N  
Sbjct: 258 RHAFDRATFALIDKLKNDPEMTARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317

Query: 70  PQEVKLNLISIGLW 83
              VK  +   G W
Sbjct: 318 DSRVKERIARAGQW 331


>gi|330909788|gb|EGH38298.1| putative inner membrane protein [Escherichia coli AA86]
          Length = 426

 Score = 34.0 bits (77), Expect = 6.2,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)

Query: 21  HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
               DR+   L    K+ P      +A+         +      +W    + L ++ N  
Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317

Query: 70  PQEVKLNLISIGLW 83
              VK  +   G W
Sbjct: 318 DSRVKERIARAGQW 331


>gi|324115268|gb|EGC09232.1| hypothetical protein ERIG_00144 [Escherichia fergusonii B253]
          Length = 426

 Score = 34.0 bits (77), Expect = 6.3,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)

Query: 21  HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
               DR+   L    K+ P      +A+         +      +W    + L ++ N  
Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317

Query: 70  PQEVKLNLISIGLW 83
              VK  +   G W
Sbjct: 318 DSRVKERIARAGQW 331


>gi|110644779|ref|YP_672509.1| hypothetical protein ECP_4672 [Escherichia coli 536]
 gi|191170706|ref|ZP_03032258.1| putative membrane protein [Escherichia coli F11]
 gi|110346371|gb|ABG72608.1| putative membrane protein [Escherichia coli 536]
 gi|190908930|gb|EDV68517.1| putative membrane protein [Escherichia coli F11]
 gi|324014023|gb|EGB83242.1| conserved domain protein [Escherichia coli MS 60-1]
          Length = 426

 Score = 34.0 bits (77), Expect = 6.3,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)

Query: 21  HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
               DR+   L    K+ P      +A+         +      +W    + L ++ N  
Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317

Query: 70  PQEVKLNLISIGLW 83
              VK  +   G W
Sbjct: 318 DSRVKERIARAGQW 331


>gi|291285721|ref|YP_003502539.1| hypothetical protein G2583_5141 [Escherichia coli O55:H7 str.
           CB9615]
 gi|290765594|gb|ADD59555.1| conserved hypothetical protein [Escherichia coli O55:H7 str.
           CB9615]
 gi|320654803|gb|EFX22772.1| hypothetical protein ECO7815_09208 [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320660655|gb|EFX28116.1| hypothetical protein ECO5905_15158 [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320665582|gb|EFX32628.1| hypothetical protein ECOSU61_14826 [Escherichia coli O157:H7 str.
           LSU-61]
          Length = 426

 Score = 34.0 bits (77), Expect = 6.3,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)

Query: 21  HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
               DR+   L    K+ P      +A+         +      +W    + L ++ N  
Sbjct: 258 RHAFDRATFALIDKLKNDPEMTARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317

Query: 70  PQEVKLNLISIGLW 83
              VK  +   G W
Sbjct: 318 DSRVKERIARAGQW 331


>gi|320195296|gb|EFW69924.1| Putative inner membrane protein [Escherichia coli WV_060327]
          Length = 426

 Score = 34.0 bits (77), Expect = 6.4,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 23/74 (31%), Gaps = 11/74 (14%)

Query: 21  HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
               DR+   L    KS P      +A+         +      +W    + L ++ N  
Sbjct: 258 RHAFDRATFALIDKLKSDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317

Query: 70  PQEVKLNLISIGLW 83
              VK  +   G W
Sbjct: 318 DSRVKERIARAGQW 331


>gi|91213994|ref|YP_543980.1| hypothetical protein UTI89_C5046 [Escherichia coli UTI89]
 gi|91075568|gb|ABE10449.1| hypothetical protein YjiN [Escherichia coli UTI89]
          Length = 438

 Score = 34.0 bits (77), Expect = 6.6,   Method: Composition-based stats.
 Identities = 12/74 (16%), Positives = 22/74 (29%), Gaps = 11/74 (14%)

Query: 21  HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
               D +   L    K+ P      +A+         +      +W    + L ++ N  
Sbjct: 270 RHAFDHATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 329

Query: 70  PQEVKLNLISIGLW 83
              VK  +   G W
Sbjct: 330 DSRVKERIARAGQW 343


>gi|15804309|ref|NP_290348.1| hypothetical protein Z5207 [Escherichia coli O157:H7 EDL933]
 gi|15833903|ref|NP_312676.1| hypothetical protein ECs4649 [Escherichia coli O157:H7 str. Sakai]
 gi|291285133|ref|YP_003501951.1| hypothetical protein G2583_4503 [Escherichia coli O55:H7 str.
           CB9615]
 gi|12518557|gb|AAG58912.1|AE005602_9 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|13364124|dbj|BAB38072.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|209754008|gb|ACI75311.1| hypothetical protein ECs4649 [Escherichia coli]
 gi|209754010|gb|ACI75312.1| hypothetical protein ECs4649 [Escherichia coli]
 gi|209754012|gb|ACI75313.1| hypothetical protein ECs4649 [Escherichia coli]
 gi|209754014|gb|ACI75314.1| hypothetical protein ECs4649 [Escherichia coli]
 gi|209754016|gb|ACI75315.1| hypothetical protein ECs4649 [Escherichia coli]
 gi|290765006|gb|ADD58967.1| hypothetical protein G2583_4503 [Escherichia coli O55:H7 str.
           CB9615]
          Length = 253

 Score = 34.0 bits (77), Expect = 6.6,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 23/73 (31%), Gaps = 9/73 (12%)

Query: 31  LSIAHKSLPNSKQAVEALFY-TSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECE 89
           L  A +   +        F     +WV    D        P E +  LI++   VLK   
Sbjct: 109 LQRATRGFHSPHAPDNHTFSSNESLWVSKQND--------PNEARAQLITLRRSVLKLTG 160

Query: 90  RIRRNKSNSYQDI 102
            +  +     Q +
Sbjct: 161 DVLNDDPRDLQLL 173


>gi|116071677|ref|ZP_01468945.1| serine/threonine protein kinase [Synechococcus sp. BL107]
 gi|116065300|gb|EAU71058.1| serine/threonine protein kinase [Synechococcus sp. BL107]
          Length = 640

 Score = 34.0 bits (77), Expect = 6.7,   Method: Composition-based stats.
 Identities = 9/57 (15%), Positives = 23/57 (40%), Gaps = 3/57 (5%)

Query: 51  TSRVWVVFIQDLVSEDNHLPQEVKLNLISI--GLWVLKECERIRRN-KSNSYQDIID 104
             RVW    +D ++    LP  ++  L S+    W  +    +++     + + ++ 
Sbjct: 412 LRRVWNELAEDWLARIEQLPPALRSRLGSLKQADWSDQRAALVKQGVTPRAVEQLVS 468


>gi|191168959|ref|ZP_03030727.1| conserved hypothetical protein [Escherichia coli B7A]
 gi|237704083|ref|ZP_04534564.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|300928843|ref|ZP_07144350.1| conserved domain protein [Escherichia coli MS 187-1]
 gi|190901006|gb|EDV60787.1| conserved hypothetical protein [Escherichia coli B7A]
 gi|226901995|gb|EEH88254.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|281181489|dbj|BAI57819.1| conserved hypothetical protein [Escherichia coli SE15]
 gi|300463183|gb|EFK26676.1| conserved domain protein [Escherichia coli MS 187-1]
 gi|315288309|gb|EFU47708.1| conserved domain protein [Escherichia coli MS 110-3]
 gi|323955350|gb|EGB51121.1| membrane protein [Escherichia coli H263]
          Length = 426

 Score = 34.0 bits (77), Expect = 7.0,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 22/74 (29%), Gaps = 11/74 (14%)

Query: 21  HWILDRSISLLSIAHKSLPNSKQAVEAL--------FYTS---RVWVVFIQDLVSEDNHL 69
               DR+   L    K+ P      +A+         +      +W    + L  + N  
Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEDFNRYLSELWGDLREWLKVDINSE 317

Query: 70  PQEVKLNLISIGLW 83
              VK  +   G W
Sbjct: 318 DSRVKERIARAGQW 331


>gi|309787444|ref|ZP_07682056.1| uncharacterized yjiN domain protein [Shigella dysenteriae 1617]
 gi|308925022|gb|EFP70517.1| uncharacterized yjiN domain protein [Shigella dysenteriae 1617]
          Length = 190

 Score = 34.0 bits (77), Expect = 7.2,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)

Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
              DR+   L    K+ P      +A+         +      +W    + L ++ N  
Sbjct: 22 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 81

Query: 70 PQEVKLNLISIGLW 83
             VK  +   G W
Sbjct: 82 DSRVKERIARAGQW 95


>gi|306815466|ref|ZP_07449615.1| hypothetical protein ECNC101_02658 [Escherichia coli NC101]
 gi|331660971|ref|ZP_08361903.1| putative membrane protein [Escherichia coli TA206]
 gi|305851128|gb|EFM51583.1| hypothetical protein ECNC101_02658 [Escherichia coli NC101]
 gi|315298314|gb|EFU57569.1| conserved domain protein [Escherichia coli MS 16-3]
 gi|331052013|gb|EGI24052.1| putative membrane protein [Escherichia coli TA206]
          Length = 426

 Score = 34.0 bits (77), Expect = 7.2,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)

Query: 21  HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
               DR+   L    K+ P      +A+         +      +W    + L ++ N  
Sbjct: 258 RHAFDRATFALIDKLKNDPEMTARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317

Query: 70  PQEVKLNLISIGLW 83
              VK  +   G W
Sbjct: 318 DSRVKERIARAGQW 331


>gi|222036084|emb|CAP78829.1| Uncharacterized protein yjiN [Escherichia coli LF82]
 gi|312948970|gb|ADR29797.1| hypothetical protein NRG857_21950 [Escherichia coli O83:H1 str. NRG
           857C]
          Length = 426

 Score = 34.0 bits (77), Expect = 7.3,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)

Query: 21  HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
               DR+   L    K+ P      +A+         +      +W    + L ++ N  
Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLNADINSE 317

Query: 70  PQEVKLNLISIGLW 83
              VK  +   G W
Sbjct: 318 DSRVKERIARAGQW 331


>gi|301305137|ref|ZP_07211237.1| hypothetical protein HMPREF9347_03752 [Escherichia coli MS 124-1]
 gi|300839642|gb|EFK67402.1| hypothetical protein HMPREF9347_03752 [Escherichia coli MS 124-1]
          Length = 237

 Score = 34.0 bits (77), Expect = 7.3,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)

Query: 21  HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
               DR+   L    K+ P      +A+         +      +W    + L ++ N  
Sbjct: 69  RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 128

Query: 70  PQEVKLNLISIGLW 83
              VK  +   G W
Sbjct: 129 DSRVKERIARAGQW 142


>gi|323950572|gb|EGB46450.1| hypothetical protein ERKG_02900 [Escherichia coli H252]
 gi|324005090|gb|EGB74309.1| conserved domain protein [Escherichia coli MS 57-2]
          Length = 426

 Score = 34.0 bits (77), Expect = 7.4,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)

Query: 21  HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
               DR+   L    K+ P      +A+         +      +W    + L ++ N  
Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLNADINSE 317

Query: 70  PQEVKLNLISIGLW 83
              VK  +   G W
Sbjct: 318 DSRVKERIARAGQW 331


>gi|293476600|ref|ZP_06665008.1| yjiN protein [Escherichia coli B088]
 gi|291321053|gb|EFE60495.1| yjiN protein [Escherichia coli B088]
          Length = 448

 Score = 34.0 bits (77), Expect = 7.5,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 24/74 (32%), Gaps = 11/74 (14%)

Query: 21  HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
            +  DR+   L    K+ P      +A+         +      +W    + L ++ N  
Sbjct: 280 RYAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 339

Query: 70  PQEVKLNLISIGLW 83
              VK  +   G W
Sbjct: 340 DSRVKERIARAGQW 353


>gi|117626656|ref|YP_859979.1| hypothetical protein APECO1_2082 [Escherichia coli APEC O1]
 gi|115515780|gb|ABJ03855.1| conserved hypothetical protein [Escherichia coli APEC O1]
 gi|294489948|gb|ADE88704.1| putative membrane protein [Escherichia coli IHE3034]
 gi|307629511|gb|ADN73815.1| hypothetical protein UM146_22455 [Escherichia coli UM146]
          Length = 426

 Score = 34.0 bits (77), Expect = 7.6,   Method: Composition-based stats.
 Identities = 12/74 (16%), Positives = 22/74 (29%), Gaps = 11/74 (14%)

Query: 21  HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
               D +   L    K+ P      +A+         +      +W    + L ++ N  
Sbjct: 258 RHAFDHATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317

Query: 70  PQEVKLNLISIGLW 83
              VK  +   G W
Sbjct: 318 DSRVKERIARAGQW 331


>gi|215489659|ref|YP_002332090.1| conserved inner membrane protein [Escherichia coli O127:H6 str.
           E2348/69]
 gi|215267731|emb|CAS12191.1| conserved inner membrane protein [Escherichia coli O127:H6 str.
           E2348/69]
          Length = 426

 Score = 34.0 bits (77), Expect = 7.7,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)

Query: 21  HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
               DR+   L    K+ P      +A+         +      +W    + L ++ N  
Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLNADINSE 317

Query: 70  PQEVKLNLISIGLW 83
              VK  +   G W
Sbjct: 318 DSRVKERIARAGQW 331


>gi|312966059|ref|ZP_07780285.1| conserved hypothetical protein [Escherichia coli 2362-75]
 gi|312289302|gb|EFR17196.1| conserved hypothetical protein [Escherichia coli 2362-75]
          Length = 415

 Score = 34.0 bits (77), Expect = 7.9,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 22/74 (29%), Gaps = 11/74 (14%)

Query: 21  HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
               DR+   L    K+ P      +A+         +      +W    + L  + N  
Sbjct: 247 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKVDINSE 306

Query: 70  PQEVKLNLISIGLW 83
              VK  +   G W
Sbjct: 307 DSRVKERIARAGQW 320


>gi|170768609|ref|ZP_02903062.1| putatitve membrane protein [Escherichia albertii TW07627]
 gi|170122713|gb|EDS91644.1| putatitve membrane protein [Escherichia albertii TW07627]
          Length = 498

 Score = 34.0 bits (77), Expect = 7.9,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 27/82 (32%), Gaps = 14/82 (17%)

Query: 16  CRKREHWI---LDRSISLLSIAHKSLPNSKQAVEAL--------FYTS---RVWVVFIQD 61
            R R H I    DR+   L    K+ P      +A+         +      +W    + 
Sbjct: 322 SRDRTHQIRHTFDRATFALIDKLKNDPEMAARADAVKNYLKKDEAFNRYLGELWGDLREW 381

Query: 62  LVSEDNHLPQEVKLNLISIGLW 83
           L ++ N     VK  +   G W
Sbjct: 382 LKTDINAENSHVKERIAQAGQW 403


>gi|218703035|ref|YP_002410664.1| hypothetical protein ECIAI39_4813 [Escherichia coli IAI39]
 gi|218373021|emb|CAR20910.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli IAI39]
          Length = 426

 Score = 34.0 bits (77), Expect = 8.0,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)

Query: 21  HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
               DR+   L    K+ P      +A+         +      +W    + L ++ N  
Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWRDLREWLKADINSE 317

Query: 70  PQEVKLNLISIGLW 83
              VK  +   G W
Sbjct: 318 DSRVKERIARAGQW 331


>gi|293408026|ref|ZP_06651866.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291472277|gb|EFF14759.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 426

 Score = 33.6 bits (76), Expect = 8.2,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 22/74 (29%), Gaps = 11/74 (14%)

Query: 21  HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
               DR+   L    K+ P      +A+         +      +W    + L  + N  
Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKVDINSE 317

Query: 70  PQEVKLNLISIGLW 83
              VK  +   G W
Sbjct: 318 DSRVKERIARAGQW 331


>gi|331671452|ref|ZP_08372250.1| putative membrane protein [Escherichia coli TA280]
 gi|331681318|ref|ZP_08381955.1| putative membrane protein [Escherichia coli H299]
 gi|331071297|gb|EGI42654.1| putative membrane protein [Escherichia coli TA280]
 gi|331081539|gb|EGI52700.1| putative membrane protein [Escherichia coli H299]
          Length = 426

 Score = 33.6 bits (76), Expect = 8.6,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 22/74 (29%), Gaps = 11/74 (14%)

Query: 21  HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
               DR+   L    K+ P      +A+         +      +W    + L  + N  
Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKVDINSE 317

Query: 70  PQEVKLNLISIGLW 83
              VK  +   G W
Sbjct: 318 DSRVKERIARAGQW 331


>gi|301021372|ref|ZP_07185398.1| conserved domain protein [Escherichia coli MS 69-1]
 gi|300398113|gb|EFJ81651.1| conserved domain protein [Escherichia coli MS 69-1]
          Length = 426

 Score = 33.6 bits (76), Expect = 9.1,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)

Query: 21  HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
               DR+   L    K+ P      +A+         +      +W    + L ++ N  
Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARTDAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317

Query: 70  PQEVKLNLISIGLW 83
              VK  +   G W
Sbjct: 318 DSRVKERIARAGQW 331


>gi|212536432|ref|XP_002148372.1| conserved hypothetical protein [Penicillium marneffei ATCC 18224]
 gi|210070771|gb|EEA24861.1| conserved hypothetical protein [Penicillium marneffei ATCC 18224]
          Length = 551

 Score = 33.6 bits (76), Expect = 9.2,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 8/89 (8%)

Query: 27  SISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS--EDNHLPQEVKLNLISIGLWV 84
           +  L+S A     N   A+  +    R+    I DL      + +   ++ +L++I L  
Sbjct: 417 AQGLMSQARLLGGNIGLAIATIVLNQRL----ISDLKGVVPASEI-DSLRHSLLAISLLT 471

Query: 85  LKECERIRRNKSNSYQDIIDVISIVRDGL 113
            ++ E +RR+ + ++   +D+   V  GL
Sbjct: 472 PQQSEIVRRSFAGAFVTQLDINLGVA-GL 499


>gi|170681238|ref|YP_001746794.1| hypothetical protein EcSMS35_4883 [Escherichia coli SMS-3-5]
 gi|194426617|ref|ZP_03059171.1| putative membrane protein [Escherichia coli B171]
 gi|194437754|ref|ZP_03069849.1| putative membrane protein [Escherichia coli 101-1]
 gi|256025268|ref|ZP_05439133.1| conserved inner membrane protein [Escherichia sp. 4_1_40B]
 gi|307136543|ref|ZP_07495899.1| conserved inner membrane protein [Escherichia coli H736]
 gi|331640385|ref|ZP_08341533.1| putative membrane protein [Escherichia coli H736]
 gi|170518956|gb|ACB17134.1| putative membrane protein [Escherichia coli SMS-3-5]
 gi|194415356|gb|EDX31624.1| putative membrane protein [Escherichia coli B171]
 gi|194423250|gb|EDX39242.1| putative membrane protein [Escherichia coli 101-1]
 gi|309704807|emb|CBJ04158.1| putative membrane protein [Escherichia coli ETEC H10407]
 gi|323163299|gb|EFZ49128.1| hypothetical protein ECE128010_0522 [Escherichia coli E128010]
 gi|323171357|gb|EFZ57004.1| hypothetical protein ECLT68_3997 [Escherichia coli LT-68]
 gi|323939656|gb|EGB35860.1| membrane protein [Escherichia coli E482]
 gi|323969420|gb|EGB64715.1| membrane protein [Escherichia coli TA007]
 gi|331040131|gb|EGI12338.1| putative membrane protein [Escherichia coli H736]
          Length = 426

 Score = 33.6 bits (76), Expect = 9.3,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 22/74 (29%), Gaps = 11/74 (14%)

Query: 21  HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
               DR+   L    K+ P      +A+         +      +W    + L  + N  
Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKVDINSE 317

Query: 70  PQEVKLNLISIGLW 83
              VK  +   G W
Sbjct: 318 DSRVKERIARAGQW 331


>gi|301019606|ref|ZP_07183765.1| conserved domain protein [Escherichia coli MS 196-1]
 gi|299882143|gb|EFI90354.1| conserved domain protein [Escherichia coli MS 196-1]
          Length = 426

 Score = 33.6 bits (76), Expect = 9.8,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 22/74 (29%), Gaps = 11/74 (14%)

Query: 21  HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
               DR+   L    K+ P      +A+         +      +W    + L  + N  
Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKVDINSE 317

Query: 70  PQEVKLNLISIGLW 83
              VK  +   G W
Sbjct: 318 DSRVKERIARAGQW 331


>gi|16132157|ref|NP_418756.1| zinc-type alcohol dehydrogenase-like protein [Escherichia coli str.
           K-12 substr. MG1655]
 gi|89111048|ref|AP_004828.1| conserved inner membrane protein [Escherichia coli str. K-12
           substr. W3110]
 gi|218708006|ref|YP_002415525.1| hypothetical protein ECUMN_4947 [Escherichia coli UMN026]
 gi|238903429|ref|YP_002929225.1| conserved inner membrane protein [Escherichia coli BW2952]
 gi|253775041|ref|YP_003037872.1| hypothetical protein ECBD_3694 [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254164257|ref|YP_003047367.1| inner membrane protein [Escherichia coli B str. REL606]
 gi|297517021|ref|ZP_06935407.1| conserved inner membrane protein [Escherichia coli OP50]
 gi|300899279|ref|ZP_07117546.1| conserved domain protein [Escherichia coli MS 198-1]
 gi|301646848|ref|ZP_07246696.1| conserved domain protein [Escherichia coli MS 146-1]
 gi|331650813|ref|ZP_08351841.1| putative membrane protein [Escherichia coli M718]
 gi|732093|sp|P39385|YJIN_ECOLI RecName: Full=Uncharacterized protein yjiN
 gi|537177|gb|AAA97232.1| ORF_f426 [Escherichia coli str. K-12 substr. MG1655]
 gi|1790793|gb|AAC77292.1| zinc-type alcohol dehydrogenase-like protein [Escherichia coli str.
           K-12 substr. MG1655]
 gi|85677079|dbj|BAE78329.1| conserved inner membrane protein [Escherichia coli str. K12 substr.
           W3110]
 gi|218435103|emb|CAR16058.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli UMN026]
 gi|238860207|gb|ACR62205.1| conserved inner membrane protein [Escherichia coli BW2952]
 gi|242379853|emb|CAQ34685.1| hypothetical protein B21_04168 [Escherichia coli BL21(DE3)]
 gi|253326085|gb|ACT30687.1| protein of unknown function DUF445 [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253976160|gb|ACT41831.1| conserved inner membrane protein [Escherichia coli B str. REL606]
 gi|253980316|gb|ACT45986.1| conserved inner membrane protein [Escherichia coli BL21(DE3)]
 gi|260450848|gb|ACX41270.1| protein of unknown function DUF445 [Escherichia coli DH1]
 gi|300357122|gb|EFJ72992.1| conserved domain protein [Escherichia coli MS 198-1]
 gi|301074979|gb|EFK89785.1| conserved domain protein [Escherichia coli MS 146-1]
 gi|315138891|dbj|BAJ46050.1| conserved inner membrane protein [Escherichia coli DH1]
 gi|331051267|gb|EGI23316.1| putative membrane protein [Escherichia coli M718]
          Length = 426

 Score = 33.6 bits (76), Expect = 9.9,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 22/74 (29%), Gaps = 11/74 (14%)

Query: 21  HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
               DR+   L    K+ P      +A+         +      +W    + L  + N  
Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKVDINSE 317

Query: 70  PQEVKLNLISIGLW 83
              VK  +   G W
Sbjct: 318 DSRVKERIARAGQW 331


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.309    0.160    0.464 

Lambda     K      H
   0.267   0.0488    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,326,723,690
Number of Sequences: 14124377
Number of extensions: 48240031
Number of successful extensions: 210303
Number of sequences better than 10.0: 463
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 287
Number of HSP's that attempted gapping in prelim test: 209751
Number of HSP's gapped (non-prelim): 556
length of query: 114
length of database: 4,842,793,630
effective HSP length: 81
effective length of query: 33
effective length of database: 3,698,719,093
effective search space: 122057730069
effective search space used: 122057730069
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.9 bits)
S2: 76 (33.6 bits)