BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780522|ref|YP_003064935.1| flagellar biosynthesis regulatory protein FlaF [Candidatus Liberibacter asiaticus str. psy62] (114 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done >gi|222147592|ref|YP_002548549.1| flagellar biosynthesis regulatory protein FlaF [Agrobacterium vitis S4] gi|221734580|gb|ACM35543.1| FLAF protein [Agrobacterium vitis S4] Length = 115 Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats. Identities = 58/115 (50%), Positives = 83/115 (72%), Gaps = 1/115 (0%) Query: 1 MRQ-YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M Q Y+E +++ + ++RE +LDRSI LLS A + ++ +EAL+YT RVW+ FI Sbjct: 1 MYQFSYNEIMEDGVADAKERERQVLDRSIDLLSQAKTAGKYGREGIEALYYTRRVWIRFI 60 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 +DL DN L E++ NLISI LW+LKEC+RIR+ +S++YQ IIDV +I+RDGLK Sbjct: 61 EDLKQPDNQLGTELRANLISIALWILKECDRIRKRESDNYQGIIDVTTIIRDGLK 115 >gi|116250503|ref|YP_766341.1| flagellar biosynthesis regulatory protein FlaF [Rhizobium leguminosarum bv. viciae 3841] gi|115255151|emb|CAK06225.1| putative flagellar synthesis related protein [Rhizobium leguminosarum bv. viciae 3841] Length = 115 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 60/111 (54%), Positives = 83/111 (74%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63 Y E +Q+S + ++RE +LDRSI LLS+A + ++A+EALFYT RVW+ FI+DL Sbjct: 5 SYAEVMQDSVADAKEREWQVLDRSIDLLSLAREKEKYGREAIEALFYTRRVWISFIEDLK 64 Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 DN L E++ NLISI +W+LKEC+RIR+ +SN+YQ IIDV +I+RDGLK Sbjct: 65 HPDNQLEIELRANLISIAIWILKECDRIRKRQSNNYQGIIDVTTIIRDGLK 115 >gi|110632637|ref|YP_672845.1| flagellar biosynthesis regulatory protein FlaF [Mesorhizobium sp. BNC1] gi|110283621|gb|ABG61680.1| flagellar FlaF [Chelativorans sp. BNC1] Length = 115 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 45/111 (40%), Positives = 77/111 (69%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63 Y E + +S + + RE +L RSI LL+ A ++ P S++A+EA+ + +RVW ++DL Sbjct: 5 SYSEVLSDSVADAKDRERQLLTRSIDLLTQAREAGPRSREAIEAILFMNRVWTSLVEDLG 64 Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 N LP+E++ NLISIGLW+L+E E +R+ +S+++ +I++ I+RDGL+ Sbjct: 65 DPGNALPKELRANLISIGLWLLREGEEVRQGRSDNFDGLIEISQIIRDGLR 115 >gi|254780522|ref|YP_003064935.1| flagellar biosynthesis regulatory protein FlaF [Candidatus Liberibacter asiaticus str. psy62] gi|254040199|gb|ACT56995.1| flagellar biosynthesis regulatory protein FlaF [Candidatus Liberibacter asiaticus str. psy62] Length = 114 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 114/114 (100%), Positives = 114/114 (100%) Query: 1 MRQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQ 60 MRQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQ Sbjct: 1 MRQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQ 60 Query: 61 DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK Sbjct: 61 DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 >gi|241203127|ref|YP_002974223.1| flagellar biosynthesis regulatory protein FlaF [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857017|gb|ACS54684.1| flagellar FlaF family protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 115 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 58/111 (52%), Positives = 81/111 (72%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63 Y E +Q+S + ++RE +LDRSI LL+ A + ++A+EALFYT RVW+ FI+DL Sbjct: 5 SYAEVMQDSVADAKEREWQVLDRSIDLLAAAREKEKYGREAIEALFYTRRVWISFIEDLK 64 Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 DN L ++ NLISI +W+LKEC+RIR+ +SN+YQ IIDV +I+RDGLK Sbjct: 65 HPDNQLEIGLRANLISIAIWILKECDRIRKRQSNNYQGIIDVTTIIRDGLK 115 >gi|209547949|ref|YP_002279866.1| flagellar biosynthesis regulatory protein FlaF [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533705|gb|ACI53640.1| flagellar FlaF family protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 115 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 60/111 (54%), Positives = 82/111 (73%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63 Y E +Q+S + ++RE +LDRSI LLS+A + ++A+EALFYT RVW+ FI+DL Sbjct: 5 SYAEVMQDSVADAKEREWQVLDRSIDLLSLAREKEKYGREAIEALFYTRRVWISFIEDLK 64 Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 DN L E++ NLISI +W+LKEC+RIR+ SN+YQ IIDV +I+RDGLK Sbjct: 65 HPDNQLEIELRANLISIAIWILKECDRIRKRLSNNYQGIIDVTTIIRDGLK 115 >gi|222084888|ref|YP_002543417.1| flagellin synthesis regulator protein [Agrobacterium radiobacter K84] gi|221722336|gb|ACM25492.1| flagellin synthesis regulator protein [Agrobacterium radiobacter K84] Length = 115 Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats. Identities = 61/111 (54%), Positives = 82/111 (73%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63 Y E +Q++ + ++RE +LDRSI+LL+ A ++A+EALFYT RVWV FI+DL Sbjct: 5 SYAEVMQDAVADAKERERQVLDRSITLLAAARDKEKYGREAIEALFYTRRVWVSFIEDLK 64 Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 S DN L E++ NLISI LW+LKEC+RIRR +S +YQ IIDV +I+RDGLK Sbjct: 65 SPDNQLNVELRANLISIALWILKECDRIRRRQSENYQGIIDVTTIIRDGLK 115 >gi|86356333|ref|YP_468225.1| flagellar biosynthesis regulatory protein FlaF [Rhizobium etli CFN 42] gi|218671598|ref|ZP_03521268.1| flagellar biosynthesis regulatory protein FlaF [Rhizobium etli GR56] gi|86280435|gb|ABC89498.1| flagellin synthesis regulator protein [Rhizobium etli CFN 42] Length = 115 Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats. Identities = 59/111 (53%), Positives = 81/111 (72%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63 Y E +Q+S + ++RE +LDRSI LLS+A ++A+EALFYT RVW+ FI+DL Sbjct: 5 SYAEVMQDSVADAKEREWQVLDRSIELLSLARDKEKYGREAIEALFYTRRVWISFIEDLK 64 Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 DN L +++ NLISI +W+LKEC+RIR+ SN+YQ IIDV +I+RDGLK Sbjct: 65 HPDNQLDVQLRANLISIAIWILKECDRIRKRLSNNYQGIIDVTTIIRDGLK 115 >gi|114706625|ref|ZP_01439526.1| flagellar protein flaF [Fulvimarina pelagi HTCC2506] gi|114538017|gb|EAU41140.1| flagellar protein flaF [Fulvimarina pelagi HTCC2506] Length = 115 Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats. Identities = 47/110 (42%), Positives = 75/110 (68%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63 Y E Q+++++ R+RE D SI+LL A KS P S+ A+EA++ T +W + ++DL Sbjct: 5 SYAEVAQDTAVDARERERQAFDHSIALLEKAEKSGPRSRDAIEAIYITRSLWSILVEDLG 64 Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 S DN LP+E++ LISIGLW++ E E IR KS +++ I+++ ++RDGL Sbjct: 65 SADNGLPEELRAELISIGLWIMSEAEAIRVGKSTNFKGIVEITRLIRDGL 114 >gi|190890385|ref|YP_001976927.1| flagellin synthesis regulator protein [Rhizobium etli CIAT 652] gi|190695664|gb|ACE89749.1| flagellin synthesis regulator protein [Rhizobium etli CIAT 652] gi|327193062|gb|EGE59974.1| flagellin synthesis regulator protein [Rhizobium etli CNPAF512] Length = 115 Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats. Identities = 58/111 (52%), Positives = 81/111 (72%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63 Y E +Q+S + ++RE +LDRSI LL++A ++A+EALFYT RVW+ FI+DL Sbjct: 5 SYAEVMQDSVADAKEREWQVLDRSIELLALARDKDKYGREAIEALFYTRRVWISFIEDLK 64 Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 DN L +++ NLISI +W+LKEC+RIR+ SN+YQ IIDV +I+RDGLK Sbjct: 65 HPDNQLDVQLRANLISIAIWILKECDRIRKRLSNNYQGIIDVTTIIRDGLK 115 >gi|254473396|ref|ZP_05086793.1| flagellar FlaF [Pseudovibrio sp. JE062] gi|211957512|gb|EEA92715.1| flagellar FlaF [Pseudovibrio sp. JE062] Length = 115 Score = 126 bits (318), Expect = 7e-28, Method: Composition-based stats. Identities = 40/112 (35%), Positives = 69/112 (61%) Query: 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQD 61 + Y ET+++SS + R +E + ++ L A + S +A +AL R+W + I D Sbjct: 3 QMSYAETLEDSSEDRRGQERELFSLVVAQLQAADEHGSASSEAAQALTSVHRLWSILISD 62 Query: 62 LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 L S +N LP E++ +LISIG+W +K+ + IR KS+ ++ +I++ +VRDGL Sbjct: 63 LGSPENGLPAELRADLISIGIWCVKQADLIREGKSDDFKSLIEINELVRDGL 114 >gi|315500093|ref|YP_004088896.1| flagellar flaf family protein [Asticcacaulis excentricus CB 48] gi|315418105|gb|ADU14745.1| flagellar FlaF family protein [Asticcacaulis excentricus CB 48] Length = 136 Score = 126 bits (318), Expect = 8e-28, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 52/112 (46%), Gaps = 3/112 (2%) Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAHK-SLPNSKQAVEALFYTSRVWVVFIQD 61 Q Y +T Q S + R+ E+ + + L A + + ++AL + R+W V D Sbjct: 4 QAYQKTAQRS-EDPRQTEYRLFGQVTRALMEAAELDRSEVSRRMDALDWNRRLWSVLGTD 62 Query: 62 LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 N LP+ ++ ++S+ +WV + + R + +I+V ++ GL Sbjct: 63 CALPGNGLPETLRAQIVSLSIWVNRHTSAVMRGQEE-IAPLIEVNRLIMQGL 113 >gi|218462422|ref|ZP_03502513.1| flagellar biosynthesis regulatory protein FlaF [Rhizobium etli Kim 5] Length = 115 Score = 126 bits (318), Expect = 9e-28, Method: Composition-based stats. Identities = 58/111 (52%), Positives = 81/111 (72%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63 Y E +Q+S + ++RE +LDRSI LL++A ++A+EALFYT RVW+ FI+DL Sbjct: 5 SYAEVMQDSVADAKEREWQVLDRSIELLALARDKEKYGREAIEALFYTRRVWISFIEDLK 64 Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 DN L +++ NLISI +W+LKEC+RIR+ SN+YQ IIDV +I+RDGLK Sbjct: 65 HPDNQLDVQLRANLISIAIWILKECDRIRKRLSNNYQGIIDVTTIIRDGLK 115 >gi|296445193|ref|ZP_06887153.1| flagellar FlaF family protein [Methylosinus trichosporium OB3b] gi|296257367|gb|EFH04434.1| flagellar FlaF family protein [Methylosinus trichosporium OB3b] Length = 115 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 43/112 (38%), Positives = 73/112 (65%) Query: 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQD 61 R Y +T Q+SS R RE +L+R+I LL++A P S+++ EA R+W++F+ D Sbjct: 3 RHLYAQTAQDSSAVARGRERDVLERAIRLLAVAKVKGPRSRESFEATDNLRRLWLLFVDD 62 Query: 62 LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 L S+ N LP+ ++ +LISIGLWV++E + I K +++ +I++ ++ DGL Sbjct: 63 LSSDGNALPEALRASLISIGLWVMREVDAIDSGKCDNFDGLIEINQMIADGL 114 >gi|302383513|ref|YP_003819336.1| flagellar FlaF family protein [Brevundimonas subvibrioides ATCC 15264] gi|302194141|gb|ADL01713.1| flagellar FlaF family protein [Brevundimonas subvibrioides ATCC 15264] Length = 120 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 3/114 (2%) Query: 1 MRQYYHETIQESSIECRKREHWILDRSISLLSIAHK-SLPNSKQAVEALFYTSRVWVVFI 59 M + Y + + R+ E+ + + L A + K ++AL + R+W V Sbjct: 1 MLKAYAQ-ASTRTETPREMEYRLFGQVTRALMHAATVDPSDVKTRIDALDWNRRLWSVLA 59 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 D N L ++ +ISI L+V + I R + ++ +ID+ + GL Sbjct: 60 TDCSDPSNQLNTPLRAQIISISLFVGRHSSAIMRGE-EDFEALIDINRSIMQGL 112 >gi|239834424|ref|ZP_04682752.1| flagellar biosynthesis regulatory protein FlaF [Ochrobactrum intermedium LMG 3301] gi|239822487|gb|EEQ94056.1| flagellar biosynthesis regulatory protein FlaF [Ochrobactrum intermedium LMG 3301] Length = 114 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 43/109 (39%), Positives = 75/109 (68%) Query: 5 YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64 Y + + + R+RE + DRSI++L +A ++ S++ ++A ++T+++W I DL S Sbjct: 6 YEDVMTDDMASARERERTLFDRSIAMLELAKENGSGSREGIDATYFTTKLWTTIIDDLGS 65 Query: 65 EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 E+N LP+E+K +IS+G++VLKE ERIR+ +SN Y +I++ +RDGL Sbjct: 66 EENVLPKELKAAIISVGIFVLKEIERIRQGESNDYATLIEITQSIRDGL 114 >gi|153011505|ref|YP_001372719.1| flagellar biosynthesis regulatory protein FlaF [Ochrobactrum anthropi ATCC 49188] gi|151563393|gb|ABS16890.1| flagellar FlaF family protein [Ochrobactrum anthropi ATCC 49188] Length = 114 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 43/109 (39%), Positives = 74/109 (67%) Query: 5 YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64 Y + + + ++RE + DRSI++L A + S++A++A ++T+++W I DL S Sbjct: 6 YEDVMNDDMASAKERERALFDRSIAMLEAAKANGSGSREAIDAAYFTTKLWTTIIDDLGS 65 Query: 65 EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 E+N LP+E+K +IS+G++VLKE ERIR+ +SN Y +I++ +RDGL Sbjct: 66 EENVLPKELKAAIISVGIFVLKEIERIRQGESNDYATLIEITQSIRDGL 114 >gi|260466600|ref|ZP_05812788.1| flagellar FlaF family protein [Mesorhizobium opportunistum WSM2075] gi|259029606|gb|EEW30894.1| flagellar FlaF family protein [Mesorhizobium opportunistum WSM2075] Length = 115 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 49/111 (44%), Positives = 78/111 (70%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63 Y + S + + RE +L RSI +LS A + +S +AVEAL +T+RVW F++DL Sbjct: 5 SYADVQSTSVSDAKDRERELLTRSIDMLSAAAAAGQDSMEAVEALHFTNRVWTTFVEDLG 64 Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 S DN LP+E++ NLISIGLW+L+E E IR+ ++++++ +I+V I+RDG++ Sbjct: 65 SSDNALPKELRANLISIGLWLLREAEDIRQGRTDNFEGLIEVSQIIRDGIQ 115 >gi|83858827|ref|ZP_00952349.1| flaF protein [Oceanicaulis alexandrii HTCC2633] gi|83853650|gb|EAP91502.1| flaF protein [Oceanicaulis alexandrii HTCC2633] Length = 118 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 3/113 (2%) Query: 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSL-PNSKQAVEALFYTSRVWVVFIQ 60 Q Y +T + + R+ E+ +L L + +Q V AL RVW F Sbjct: 3 YQAY-KTASSRTEDPRQTEYRLLGEVTRGLMEVRDAPKSEIRQRVAALDRNRRVWSAFAA 61 Query: 61 DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 D S N+LP ++ +IS+ ++V KE R ++ + +ID+ + GL Sbjct: 62 DCASSHNNLPDSLRAGIISLSIFVSKETSAAMRGET-DVETLIDINRTIMQGL 113 >gi|217976243|ref|YP_002360390.1| flagellar biosynthesis regulatory protein FlaF [Methylocella silvestris BL2] gi|217501619|gb|ACK49028.1| flagellar FlaF family protein [Methylocella silvestris BL2] Length = 115 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 43/111 (38%), Positives = 72/111 (64%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63 Y E+++ S ECR+RE LD ++ LL A S A EAL + R+W I+DL+ Sbjct: 5 SYAESLESSPGECRERERRALDHALQLLEKARHDGVGSAAAAEALHFLCRLWKALIEDLI 64 Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 S +N LP ++ +L+S+G+WVL+E + IR KS++++ +I++ S +R+GL+ Sbjct: 65 SPENDLPDVLRGDLVSVGIWVLREADSIREEKSSNFRGLIEICSAIRNGLR 115 >gi|225628426|ref|ZP_03786460.1| Protein flaF [Brucella ceti str. Cudo] gi|254706499|ref|ZP_05168327.1| flagellar biosynthesis regulatory protein FlaF [Brucella pinnipedialis M163/99/10] gi|254711216|ref|ZP_05173027.1| flagellar biosynthesis regulatory protein FlaF [Brucella pinnipedialis B2/94] gi|254711815|ref|ZP_05173626.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti M644/93/1] gi|254714884|ref|ZP_05176695.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti M13/05/1] gi|256030155|ref|ZP_05443769.1| flagellar biosynthesis regulatory protein FlaF [Brucella pinnipedialis M292/94/1] gi|256158334|ref|ZP_05456238.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti M490/95/1] gi|256252732|ref|ZP_05458268.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti B1/94] gi|260166793|ref|ZP_05753604.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. F5/99] gi|261216574|ref|ZP_05930855.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti M13/05/1] gi|261219810|ref|ZP_05934091.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti B1/94] gi|261313953|ref|ZP_05953150.1| flagellar biosynthesis regulatory protein FlaF [Brucella pinnipedialis M163/99/10] gi|261318807|ref|ZP_05958004.1| flagellar biosynthesis regulatory protein FlaF [Brucella pinnipedialis B2/94] gi|261319444|ref|ZP_05958641.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti M644/93/1] gi|261756170|ref|ZP_05999879.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. F5/99] gi|265987186|ref|ZP_06099743.1| flagellar biosynthesis regulatory protein FlaF [Brucella pinnipedialis M292/94/1] gi|265996849|ref|ZP_06109406.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti M490/95/1] gi|225616272|gb|EEH13320.1| Protein flaF [Brucella ceti str. Cudo] gi|260918394|gb|EEX85047.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti B1/94] gi|260921663|gb|EEX88231.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti M13/05/1] gi|261292134|gb|EEX95630.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti M644/93/1] gi|261298030|gb|EEY01527.1| flagellar biosynthesis regulatory protein FlaF [Brucella pinnipedialis B2/94] gi|261302979|gb|EEY06476.1| flagellar biosynthesis regulatory protein FlaF [Brucella pinnipedialis M163/99/10] gi|261736154|gb|EEY24150.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. F5/99] gi|262551146|gb|EEZ07307.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti M490/95/1] gi|264659383|gb|EEZ29644.1| flagellar biosynthesis regulatory protein FlaF [Brucella pinnipedialis M292/94/1] Length = 114 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 43/109 (39%), Positives = 74/109 (67%) Query: 5 YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64 Y + + + ++RE + DRSI++L +A + S++ ++A ++TS++W I DL S Sbjct: 6 YEDVMNDDMASAKERERMLFDRSIAMLEVARANGAESREGIDAAYFTSKLWTTIIDDLGS 65 Query: 65 EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 E+N LP+E++ +ISIG++VLKE ERIR+ +SN Y +I++ +RDGL Sbjct: 66 EENALPKELRAAIISIGIFVLKEIERIRQGESNDYATLIEITQSIRDGL 114 >gi|170748122|ref|YP_001754382.1| flagellar biosynthesis regulatory protein FlaF [Methylobacterium radiotolerans JCM 2831] gi|170654644|gb|ACB23699.1| flagellar FlaF family protein [Methylobacterium radiotolerans JCM 2831] Length = 119 Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 37/112 (33%), Positives = 67/112 (59%) Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDL 62 + Y ET+ +S R+RE DR+I L+ A + +++ EA + R+W + I DL Sbjct: 8 EAYRETMGDSPAIGREREREAFDRAIELMKRADAAEASAELRWEATSFLQRLWSMLIDDL 67 Query: 63 VSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 + N LP +++ +LISIGLW + ++I R ++ ++ +I V +++RDGL+ Sbjct: 68 ANPANSLPPQLRADLISIGLWNMSRSDQILRGDASGFEPLIYVNTLIRDGLR 119 >gi|23500851|ref|NP_700291.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis 1330] gi|62317954|ref|YP_223807.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus bv. 1 str. 9-941] gi|83269931|ref|YP_419222.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis biovar Abortus 2308] gi|148558679|ref|YP_001258001.1| flagellar biosynthesis regulatory protein FlaF [Brucella ovis ATCC 25840] gi|161621179|ref|YP_001595065.1| flagellar biosynthesis regulatory protein FlaF [Brucella canis ATCC 23365] gi|163845454|ref|YP_001623109.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis ATCC 23445] gi|189023205|ref|YP_001932946.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus S19] gi|225686882|ref|YP_002734854.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis ATCC 23457] gi|237817499|ref|ZP_04596490.1| Protein flaF [Brucella abortus str. 2308 A] gi|254691614|ref|ZP_05154868.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus bv. 6 str. 870] gi|254695090|ref|ZP_05156918.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus bv. 3 str. Tulya] gi|254698186|ref|ZP_05160014.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus bv. 2 str. 86/8/59] gi|254699259|ref|ZP_05161087.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis bv. 5 str. 513] gi|254702380|ref|ZP_05164208.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis bv. 3 str. 686] gi|254720776|ref|ZP_05182587.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. 83/13] gi|254731631|ref|ZP_05190209.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus bv. 4 str. 292] gi|256015895|ref|YP_003105904.1| flagellar biosynthesis regulatory protein FlaF [Brucella microti CCM 4915] gi|256059807|ref|ZP_05450002.1| flagellar biosynthesis regulatory protein FlaF [Brucella neotomae 5K33] gi|256112179|ref|ZP_05453100.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis bv. 3 str. Ether] gi|256256801|ref|ZP_05462337.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus bv. 9 str. C68] gi|256261981|ref|ZP_05464513.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis bv. 2 str. 63/9] gi|260544139|ref|ZP_05819960.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus NCTC 8038] gi|260568717|ref|ZP_05839186.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis bv. 4 str. 40] gi|260757245|ref|ZP_05869593.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus bv. 6 str. 870] gi|260759390|ref|ZP_05871738.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus bv. 4 str. 292] gi|260762633|ref|ZP_05874965.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus bv. 2 str. 86/8/59] gi|260883049|ref|ZP_05894663.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus bv. 9 str. C68] gi|261215441|ref|ZP_05929722.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus bv. 3 str. Tulya] gi|261323787|ref|ZP_05962984.1| flagellar biosynthesis regulatory protein FlaF [Brucella neotomae 5K33] gi|261749699|ref|ZP_05993408.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis bv. 5 str. 513] gi|261752943|ref|ZP_05996652.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis bv. 3 str. 686] gi|265985834|ref|ZP_06098569.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. 83/13] gi|265993606|ref|ZP_06106163.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis bv. 3 str. Ether] gi|294852965|ref|ZP_06793637.1| flagellar protein FlaF [Brucella sp. NVSL 07-0026] gi|297250154|ref|ZP_06933855.1| flaF, flagellar biosynthesis regulatory protein FlaF [Brucella abortus bv. 5 str. B3196] gi|306840133|ref|ZP_07472918.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. NF 2653] gi|306841279|ref|ZP_07473990.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. BO2] gi|23464515|gb|AAN34296.1| flagellar protein FlaF, putative [Brucella suis 1330] gi|62198147|gb|AAX76446.1| hypothetical FlaF [Brucella abortus bv. 1 str. 9-941] gi|82940205|emb|CAJ13261.1| flagellar protein FlaF, putative [Brucella melitensis biovar Abortus 2308] gi|148369964|gb|ABQ62836.1| putative flagellar protein FlaF [Brucella ovis ATCC 25840] gi|161337990|gb|ABX64294.1| flagellar FlaF family protein [Brucella canis ATCC 23365] gi|163676177|gb|ABY40287.1| Hypothetical protein, conserved [Brucella suis ATCC 23445] gi|189021779|gb|ACD74500.1| flagellar protein FlaF, putative [Brucella abortus S19] gi|225642987|gb|ACO02900.1| Protein flaF [Brucella melitensis ATCC 23457] gi|237787334|gb|EEP61551.1| Protein flaF [Brucella abortus str. 2308 A] gi|255998555|gb|ACU50242.1| flagellar biosynthesis regulatory protein FlaF [Brucella microti CCM 4915] gi|260097410|gb|EEW81284.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus NCTC 8038] gi|260155382|gb|EEW90463.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis bv. 4 str. 40] gi|260669708|gb|EEX56648.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus bv. 4 str. 292] gi|260673054|gb|EEX59875.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus bv. 2 str. 86/8/59] gi|260677353|gb|EEX64174.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus bv. 6 str. 870] gi|260872577|gb|EEX79646.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus bv. 9 str. C68] gi|260917048|gb|EEX83909.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus bv. 3 str. Tulya] gi|261299767|gb|EEY03264.1| flagellar biosynthesis regulatory protein FlaF [Brucella neotomae 5K33] gi|261739452|gb|EEY27378.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis bv. 5 str. 513] gi|261742696|gb|EEY30622.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis bv. 3 str. 686] gi|262764476|gb|EEZ10508.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis bv. 3 str. Ether] gi|263091465|gb|EEZ16001.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis bv. 2 str. 63/9] gi|264664426|gb|EEZ34687.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. 83/13] gi|294818620|gb|EFG35620.1| flagellar protein FlaF [Brucella sp. NVSL 07-0026] gi|297174023|gb|EFH33387.1| flaF, flagellar biosynthesis regulatory protein FlaF [Brucella abortus bv. 5 str. B3196] gi|306288681|gb|EFM60012.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. BO2] gi|306404778|gb|EFM61072.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. NF 2653] gi|326411300|gb|ADZ68364.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis M28] gi|326554589|gb|ADZ89228.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis M5-90] Length = 114 Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 43/109 (39%), Positives = 73/109 (66%) Query: 5 YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64 Y + + + ++RE + DRSI++L A + S++ ++A ++TS++W I DL S Sbjct: 6 YEDVMNDDMASAKERERMLFDRSIAMLEAARANGAESREGIDAAYFTSKLWTTIIDDLGS 65 Query: 65 EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 E+N LP+E++ +ISIG++VLKE ERIR+ +SN Y +I++ +RDGL Sbjct: 66 EENALPKELRAAIISIGIFVLKEIERIRQGESNDYATLIEITQSIRDGL 114 >gi|167646850|ref|YP_001684513.1| flagellar biosynthesis regulatory protein FlaF [Caulobacter sp. K31] gi|167349280|gb|ABZ72015.1| flagellar FlaF family protein [Caulobacter sp. K31] Length = 120 Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 53/111 (47%), Gaps = 3/111 (2%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQ-AVEALFYTSRVWVVFIQDL 62 Y +T + R+ E+ + + L A ++ + ++AL + RVW D Sbjct: 5 AYQQTATRT-ENPREMEYRLFGQVTRALMAASEAPADDIATRIDALDWNRRVWSALATDC 63 Query: 63 VSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 +N LP +++ ++IS+ LWV + + R K ++ +I++ ++ GL Sbjct: 64 SLPENTLPVQLRASIISLSLWVGRHSSAVMR-KEEDFEPLIEINRMIMQGL 113 >gi|17988506|ref|NP_541139.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis bv. 1 str. 16M] gi|256042863|ref|ZP_05445809.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis bv. 1 str. Rev.1] gi|260564100|ref|ZP_05834585.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis bv. 1 str. 16M] gi|265989298|ref|ZP_06101855.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis bv. 1 str. Rev.1] gi|17984298|gb|AAL53403.1| flaf protein [Brucella melitensis bv. 1 str. 16M] gi|260151743|gb|EEW86836.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis bv. 1 str. 16M] gi|262999967|gb|EEZ12657.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis bv. 1 str. Rev.1] Length = 114 Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats. Identities = 42/109 (38%), Positives = 73/109 (66%) Query: 5 YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64 Y + + + ++RE + DR+I++L A + S++ ++A ++TS++W I DL S Sbjct: 6 YEDVMNDDMASAKERERMLFDRTIAMLEAARANGAESREGIDAAYFTSKLWTTIIDDLGS 65 Query: 65 EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 E+N LP+E++ +ISIG++VLKE ERIR+ +SN Y +I++ +RDGL Sbjct: 66 EENALPKELRAAIISIGIFVLKEIERIRQGESNDYATLIEITQSIRDGL 114 >gi|319781662|ref|YP_004141138.1| flagellar FlaF family protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167550|gb|ADV11088.1| flagellar FlaF family protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 115 Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats. Identities = 48/111 (43%), Positives = 77/111 (69%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63 Y + S + + RE +L RSI +L+ A + S +A+EAL +T+RVW F++DL Sbjct: 5 SYADIQSNSVADAKDRERELLTRSIDMLAAAAVAGHGSMEAIEALHFTNRVWTAFVEDLG 64 Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 S DN LP+E++ NLISIGLW+L+E E IR+ ++N+++ +I+V I+RDG++ Sbjct: 65 SSDNALPKELRANLISIGLWLLREAEDIRQGRTNNFEGLIEVSQIIRDGIQ 115 >gi|319409166|emb|CBI82810.1| Flaf protein [Bartonella schoenbuchensis R1] Length = 122 Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats. Identities = 35/109 (32%), Positives = 65/109 (59%) Query: 5 YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64 Y + +++ ++ R+RE + DR I L A P S + EA+ + ++W++ I+DL Sbjct: 6 YEDVMEDDAMSARERERSLFDRCIKLFLDAKAKGPGSHEVNEAVQFARKLWIILIEDLGQ 65 Query: 65 EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 +N LP E+K +LISIG ++LKE +++ K + ++++ +RDGL Sbjct: 66 AENALPPELKASLISIGFFILKEIQKLDEGKVADFDVLVEISESIRDGL 114 >gi|306845416|ref|ZP_07477990.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. BO1] gi|306274159|gb|EFM55975.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. BO1] Length = 114 Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats. Identities = 42/109 (38%), Positives = 73/109 (66%) Query: 5 YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64 Y + + + ++RE + DRSI++L A + S++ ++A ++TS++W I DL S Sbjct: 6 YEDVMNDDMASAKERERMLFDRSIAMLEAARANGAESREGIDAAYFTSKLWTTIIDDLGS 65 Query: 65 EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 E+N LP+E++ +ISIG++VLKE ERIR+ +SN Y +I++ ++DGL Sbjct: 66 EENALPKELRAAIISIGIFVLKEIERIRQGESNDYATLIEITQSIQDGL 114 >gi|328545488|ref|YP_004305597.1| flagellar protein flaF [polymorphum gilvum SL003B-26A1] gi|326415229|gb|ADZ72292.1| Flagellar protein flaF [Polymorphum gilvum SL003B-26A1] Length = 116 Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats. Identities = 45/111 (40%), Positives = 71/111 (63%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63 Y +TI + ++ R E +D I+ L A + S++AVEA+F T R+W FI+ L Sbjct: 5 SYAQTIDDLCVDQRSDERQAMDIVIAQLERAREKGLKSREAVEAIFNTRRLWSFFIESLA 64 Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 + N LP ++ +LISIG+WV+KE ER+R+ ++ + +IDV ++VRDGLK Sbjct: 65 DDANELPPSLRADLISIGIWVIKEVERVRQRETETLDALIDVNAMVRDGLK 115 >gi|315122287|ref|YP_004062776.1| flagellar biosynthesis regulatory protein FlaF [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495689|gb|ADR52288.1| flagellar biosynthesis regulatory protein FlaF [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 114 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 86/114 (75%), Positives = 102/114 (89%) Query: 1 MRQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQ 60 MRQYY+E +QESS+E RKRE WIL++SISLLS A +S PNS++ VEAL+YT+RVWVVFIQ Sbjct: 1 MRQYYNEIVQESSVESRKREFWILNKSISLLSSAQQSKPNSREVVEALYYTNRVWVVFIQ 60 Query: 61 DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 DLVSE N L +EVKLNLISIGLW+L+ECERIRRN+SN+YQ IIDV S+VRDGLK Sbjct: 61 DLVSESNQLTEEVKLNLISIGLWILEECERIRRNESNNYQAIIDVTSVVRDGLK 114 >gi|13472595|ref|NP_104162.1| flagellar biosynthesis regulatory protein FlaF [Mesorhizobium loti MAFF303099] gi|14023341|dbj|BAB49948.1| flagellar protein; FlaF [Mesorhizobium loti MAFF303099] Length = 115 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 49/111 (44%), Positives = 79/111 (71%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63 Y + S + + RE +L RSI +LS A + +S +A+EAL +T+RVW +F++DL Sbjct: 5 SYADVQSTSVSDAKDRERELLTRSIDMLSAAAAAGQDSMEAIEALNFTNRVWTIFVEDLG 64 Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 S DN LP+E++ NLISIGLW+L+E E IR+ ++N+++ +I+V I+RDG++ Sbjct: 65 SSDNALPKELRANLISIGLWLLREAEDIRQGRTNNFEGLIEVSQIIRDGIQ 115 >gi|295689336|ref|YP_003593029.1| flagellar FlaF family protein [Caulobacter segnis ATCC 21756] gi|295431239|gb|ADG10411.1| flagellar FlaF family protein [Caulobacter segnis ATCC 21756] Length = 120 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 53/111 (47%), Gaps = 3/111 (2%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSL-PNSKQAVEALFYTSRVWVVFIQDL 62 Y + + R+ E+ + + L A ++ + + ++AL + +VW D Sbjct: 5 AYQQAA-TRAENPREMEYRLFGQVTRALMEASQAPADDFAKRIDALDWNRKVWSALATDC 63 Query: 63 VSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 DN LP E++ ++IS+ LWV + + R K ++ +I++ I+ GL Sbjct: 64 SLPDNQLPMELRASIISLSLWVSRHSSAVMR-KEEEFEPLIEINRIIMQGL 113 >gi|325291965|ref|YP_004277829.1| flagellar biosynthesis regulatory protein FlaF [Agrobacterium sp. H13-3] gi|325059818|gb|ADY63509.1| flagellar biosynthesis regulatory protein FlaF [Agrobacterium sp. H13-3] Length = 114 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 52/111 (46%), Positives = 74/111 (66%), Gaps = 1/111 (0%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63 Y E +++ + + RE L +SI LL A S + + +EALFYT RVW+ FI+DL Sbjct: 5 SYAEIMEDGVADAKDRERQALTKSIDLLVEAKDS-SSQRHTIEALFYTRRVWIRFIEDLK 63 Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 +N L E++ NLISI +W+LKECE IR+ +S ++Q IIDV +I+RDGLK Sbjct: 64 QPENQLAMELRANLISIAIWILKECELIRKRQSTNFQGIIDVTTIIRDGLK 114 >gi|170744546|ref|YP_001773201.1| flagellar biosynthesis regulatory protein FlaF [Methylobacterium sp. 4-46] gi|168198820|gb|ACA20767.1| flagellar FlaF family protein [Methylobacterium sp. 4-46] Length = 115 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 39/113 (34%), Positives = 68/113 (60%) Query: 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQD 61 R Y+E ++++ CR+RE DR+++LL A + + EA+ + R+W V I+D Sbjct: 3 RFSYNEILEDAPDLCRERERAAFDRALALLRKADAADAKFEDRGEAVSFLQRLWDVLIED 62 Query: 62 LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 L++ +N LP+ ++ +L+SIGLW ++E R S +IDV + +RDGL+ Sbjct: 63 LLNPENGLPEPLRTDLVSIGLWSMREASEALRLPERSLAPLIDVNTAIRDGLR 115 >gi|90418362|ref|ZP_01226274.1| flagellar protein FlaF [Aurantimonas manganoxydans SI85-9A1] gi|90338034|gb|EAS51685.1| flagellar protein FlaF [Aurantimonas manganoxydans SI85-9A1] Length = 115 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 46/111 (41%), Positives = 72/111 (64%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63 Y E Q+ ++ R+RE LD SI L A P S+ A+EA++ T +W + I+DL Sbjct: 5 SYAEVAQDIEVDARERERQALDHSIEQLKKADAEGPRSRAAIEAIYTTRSLWALVIEDLA 64 Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 S DN LP+ ++ LISIGLW+++E E IR KS +++ II++ +++R+GLK Sbjct: 65 SADNGLPEALRAELISIGLWIMREAEAIRLGKSENFKGIIEITTLIREGLK 115 >gi|15887922|ref|NP_353603.1| flagellar biosynthesis regulatory protein FlaF [Agrobacterium tumefaciens str. C58] gi|15155518|gb|AAK86388.1| FLAF protein [Agrobacterium tumefaciens str. C58] Length = 114 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 53/111 (47%), Positives = 74/111 (66%), Gaps = 1/111 (0%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63 Y E +++ + RE L +SI LL A S + + ++EALFYT RVW+ FI+DL Sbjct: 5 SYAEIMEDGVANAKDRERQALTKSIDLLVEARDS-SSQRHSIEALFYTRRVWIRFIEDLK 63 Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 DN L E++ NLISI +W+LKECE IR+ +S ++Q IIDV +I+RDGLK Sbjct: 64 QPDNQLAMELRANLISIAIWILKECELIRKRQSTNFQGIIDVTTIIRDGLK 114 >gi|118589963|ref|ZP_01547367.1| flagellar protein flaF [Stappia aggregata IAM 12614] gi|118437460|gb|EAV44097.1| flagellar protein flaF [Stappia aggregata IAM 12614] Length = 116 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 45/112 (40%), Positives = 66/112 (58%) Query: 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQD 61 Y E + + + R EH + I L++A + S +AV+ALFYT R+W F++ Sbjct: 3 NLSYAEVMDDLCSDQRLNEHEAMTIVIGKLNVAKERGVKSPEAVDALFYTRRLWSYFLEH 62 Query: 62 LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 L E N LP E + NLIS+G+WVLKE E +R+ + + DII + SI+RD L Sbjct: 63 LADEANELPIETRANLISVGIWVLKEVEALRQWEQEDFSDIIQINSIIRDSL 114 >gi|161485648|ref|NP_420272.2| flagellar biosynthesis regulatory protein FlaF [Caulobacter crescentus CB15] gi|221234463|ref|YP_002516899.1| flagellar biosynthesis regulatory protein FlaF [Caulobacter crescentus NA1000] gi|220963635|gb|ACL94991.1| flagellar biosynthesis regulatory protein flaF [Caulobacter crescentus NA1000] Length = 120 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 52/111 (46%), Gaps = 3/111 (2%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQ-AVEALFYTSRVWVVFIQDL 62 Y + + R+ E+ + + L A ++ + ++AL + +VW D Sbjct: 5 AYQQAA-TRAENPREMEYRLFGQVTRALMDASQAPADDIATRIDALDWNRKVWSALATDC 63 Query: 63 VSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 +N LP E++ ++IS+ LWV + + R K ++ +I++ ++ GL Sbjct: 64 ALPENQLPMELRASIISLSLWVGRHSSAVMR-KEEDFEPLIEINRMIMQGL 113 >gi|300024585|ref|YP_003757196.1| flagellar FlaF family protein [Hyphomicrobium denitrificans ATCC 51888] gi|299526406|gb|ADJ24875.1| flagellar FlaF family protein [Hyphomicrobium denitrificans ATCC 51888] Length = 114 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 43/112 (38%), Positives = 76/112 (67%) Query: 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQD 61 + Y ET+ +S+ R+ E +++S+S+L A K+ NS++AV+A+ + +R+W ++D Sbjct: 3 KFSYEETLSDSAGRKRENERLAIEQSVSMLRSAEKAGANSREAVDAICFLNRLWSFLLED 62 Query: 62 LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 LV +N LP +++ NLISIG+W+LKE + I KS ++ +IDV S++ +GL Sbjct: 63 LVKPENALPDDIRANLISIGIWMLKEADAISSGKSKNFAGLIDVSSVIAEGL 114 >gi|115523196|ref|YP_780107.1| flagellar biosynthesis regulatory protein FlaF [Rhodopseudomonas palustris BisA53] gi|115517143|gb|ABJ05127.1| flagellar FlaF family protein [Rhodopseudomonas palustris BisA53] Length = 115 Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats. Identities = 44/110 (40%), Positives = 64/110 (58%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63 Y I++S+ E R RE+ LD I LL + EAL + ++W F+QDL Sbjct: 5 SYDNMIEDSAHEARAREYQALDHGIDLLKRLQNGDLQPFEQTEALLFMRKLWTFFVQDLS 64 Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 S N LP+ ++ LISIGLWV+KE +RIR+ K+ D+I + +I+RD L Sbjct: 65 SPKNGLPESLRAELISIGLWVIKEADRIRQEKATDIDDLIAINTIIRDSL 114 >gi|254505115|ref|ZP_05117266.1| Flagellar protein FlaF [Labrenzia alexandrii DFL-11] gi|222441186|gb|EEE47865.1| Flagellar protein FlaF [Labrenzia alexandrii DFL-11] Length = 116 Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats. Identities = 47/112 (41%), Positives = 69/112 (61%) Query: 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQD 61 Y E + I+ R EH + I+ L+ AH+ S +AV+ALFYT RVW F+++ Sbjct: 3 NLSYAEVMDNLCIDDRLNEHKAMCIIIAKLTAAHEKGVRSPEAVDALFYTRRVWGFFMEN 62 Query: 62 LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 L + N LP E + NLIS+G+WVLKE E +R+ + + DII++ SI+RD L Sbjct: 63 LADDANQLPDETRANLISVGIWVLKEAEALRQWEREDFSDIIEINSIIRDSL 114 >gi|121602017|ref|YP_989380.1| flagellar biosynthesis regulatory protein FlaF [Bartonella bacilliformis KC583] gi|120614194|gb|ABM44795.1| Flaf protein [Bartonella bacilliformis KC583] Length = 122 Score = 117 bits (293), Expect = 7e-25, Method: Composition-based stats. Identities = 37/109 (33%), Positives = 68/109 (62%) Query: 5 YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64 Y + +++ ++ R+RE + DR I LL A + P + +A EA+ + ++WV+ I+DL Sbjct: 6 YEDVMEDDAMSARERERSLFDRCIKLLQDAKEKGPGTYEANEAVQFARKLWVILIEDLGQ 65 Query: 65 EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 +N LPQ +K +LISIG ++LKE +R+ + + ++++ +RDGL Sbjct: 66 AENALPQTLKASLISIGFFILKEIQRLDEGEIADFDVLVEISESIRDGL 114 >gi|329889088|ref|ZP_08267431.1| protein flaF [Brevundimonas diminuta ATCC 11568] gi|328844389|gb|EGF93953.1| protein flaF [Brevundimonas diminuta ATCC 11568] Length = 120 Score = 116 bits (292), Expect = 7e-25, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 48/112 (42%), Gaps = 3/112 (2%) Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAHK-SLPNSKQAVEALFYTSRVWVVFIQD 61 Q Y +T + R+ E+ + + L A + ++AL + R+W Sbjct: 4 QAY-KTAATRAESPREMEYRLFGQVTRALMHAATLDKSDVAGRMDALDWNRRLWSTLATA 62 Query: 62 LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 N +PQ ++ IS+ L+V + + R + + + +ID+ ++ GL Sbjct: 63 CSDSANAMPQAMRAQFISLSLFVNRNTSEVMRGE-DDFSTLIDINRMIMQGL 113 >gi|92116893|ref|YP_576622.1| flagellar biosynthesis regulatory protein FlaF [Nitrobacter hamburgensis X14] gi|91799787|gb|ABE62162.1| flagellar FlaF [Nitrobacter hamburgensis X14] Length = 121 Score = 116 bits (292), Expect = 7e-25, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 3/113 (2%) Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQ-AVEALFYTSRVWVVFIQD 61 Q Y T Q SS R+ E L ++ L + + AL + R+W +F+ Sbjct: 6 QAYARTAQTSS-SPREIEAQALLKAARQLQEIQNNWTGPDKNMHNALLFNRRLWSIFMSA 64 Query: 62 LVSEDNHLPQEVKLNLISIGLWVLKECERI-RRNKSNSYQDIIDVISIVRDGL 113 S+DN P EV+ N+ +IG++V+K+ + + +ID+ + GL Sbjct: 65 ADSDDNQQPLEVRQNIANIGVFVMKQTIDMQMNPDPAKLKSLIDINCNLAAGL 117 >gi|75675299|ref|YP_317720.1| flagellar biosynthesis regulatory protein FlaF [Nitrobacter winogradskyi Nb-255] gi|74420169|gb|ABA04368.1| putative flagellar protein FlaF [Nitrobacter winogradskyi Nb-255] Length = 121 Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 3/113 (2%) Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSK-QAVEALFYTSRVWVVFIQD 61 Q Y T Q SS R+ E L ++ L +AL + R+W +F+ Sbjct: 6 QAYARTAQTSS-SPREIEAQALLKAARQLREVQDKWEGPDNDMHKALLFNRRLWSIFMSA 64 Query: 62 LVSEDNHLPQEVKLNLISIGLWVLKEC-ERIRRNKSNSYQDIIDVISIVRDGL 113 S+ N P EV+ N+ +IG++V+K+ + +ID+ + GL Sbjct: 65 ADSDSNPQPLEVRQNIANIGVFVMKQTVDMQLNPDPAKLTALIDINCNLAAGL 117 >gi|222053750|ref|YP_002536112.1| flagellar FlaF family protein [Geobacter sp. FRC-32] gi|221563039|gb|ACM19011.1| flagellar FlaF family protein [Geobacter sp. FRC-32] Length = 128 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 56/114 (49%), Gaps = 5/114 (4%) Query: 5 YHETIQESSIECRKREHWILDRSISLLSIAHKSL---PNSKQAVEALFYTSRVWVVFIQD 61 Y IQ+ ++ R+ E +L R+ +L + K+ EAL + ++W F + Sbjct: 9 YAN-IQKEALTGRELEASVLTRAAQMLKHCQDNWNAPDREKKLQEALKFNQKIWSFFQAE 67 Query: 62 LVSEDNHLPQEVKLNLISIGLWVLKECERIRR-NKSNSYQDIIDVISIVRDGLK 114 L DN LP++++ +++S+ L+V K I +S +ID+ + GL+ Sbjct: 68 LSVPDNPLPKKLREDILSLSLFVDKRIFEIIAFPESEKLTIVIDINMNIAAGLR 121 >gi|85715037|ref|ZP_01046022.1| putative flagellar protein FlaF [Nitrobacter sp. Nb-311A] gi|85698234|gb|EAQ36106.1| putative flagellar protein FlaF [Nitrobacter sp. Nb-311A] Length = 121 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 3/113 (2%) Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSK-QAVEALFYTSRVWVVFIQD 61 Q Y T Q SS R+ E L ++ L + +AL + R+W +F+ Sbjct: 6 QAYARTAQTSS-SPREIEAQALLKAARQLREIQEHWKGPDNDMHKALLFNRRLWSIFMSA 64 Query: 62 LVSEDNHLPQEVKLNLISIGLWVLKEC-ERIRRNKSNSYQDIIDVISIVRDGL 113 SE N P EV+ N+ +IG++V+K+ + +ID+ + GL Sbjct: 65 ADSESNPQPLEVRQNIANIGVFVMKQTVDMQLNPDPAKLTALIDINCNLAAGL 117 >gi|27381966|ref|NP_773495.1| flagellar biosynthesis regulatory protein FlaF [Bradyrhizobium japonicum USDA 110] gi|27355136|dbj|BAC52120.1| fliC [Bradyrhizobium japonicum USDA 110] Length = 117 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 39/111 (35%), Positives = 64/111 (57%) Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDL 62 + Y ++ES + R RE L I L K + + V++L Y R+W +FI+DL Sbjct: 7 EAYEAVVEESGYQERGRERQALSLGIDRLERIEKGPFSFEDLVQSLLYVRRLWTIFIEDL 66 Query: 63 VSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 +N LP +++ ++ISIGLWV+KE +R+R KS +I++ ++RD L Sbjct: 67 SHPENGLPDKLRADIISIGLWVIKEADRLREEKSGDVMQLIEINRLIRDAL 117 >gi|254294686|ref|YP_003060709.1| flagellar FlaF family protein [Hirschia baltica ATCC 49814] gi|254043217|gb|ACT60012.1| flagellar FlaF family protein [Hirschia baltica ATCC 49814] Length = 134 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 46/112 (41%), Gaps = 3/112 (2%) Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIA-HKSLPNSKQAVEALFYTSRVWVVFIQD 61 Q Y +T + + R E + L A + V++L +VW D Sbjct: 4 QAYQKTA-NRTADPRDVEFRLFAEVTRDLMEATKAEKHEISKVVKSLDKNRQVWNAMAMD 62 Query: 62 LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 N LP +++ +IS+ L+V + RN+S + +ID+ + GL Sbjct: 63 CAQPGNALPDDLRAGIISLSLFVNRHTSEASRNRSE-IETLIDINRNIMQGL 113 >gi|260429492|ref|ZP_05783469.1| flagellar biosynthesis regulatory protein FlaF [Citreicella sp. SE45] gi|260420115|gb|EEX13368.1| flagellar biosynthesis regulatory protein FlaF [Citreicella sp. SE45] Length = 125 Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 3/111 (2%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNS-KQAVEALFYTSRVWVVFIQDL 62 Y E S+ R E+ + R + A ++ P + Q VEAL+ R+W D+ Sbjct: 10 AYAENA-TSTRTDRATEYDLFARVTHRIKAAAEAGPKAYPQLVEALYDNRRLWTTLAVDV 68 Query: 63 VSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 N LPQE++ + + +V ++ K+ +++V + + GL Sbjct: 69 ADPSNKLPQELRAQIFYLSEFVQLHTGKVLARKAR-LAPLLEVNAAIMRGL 118 >gi|319403981|emb|CBI77569.1| Flaf protein [Bartonella rochalimae ATCC BAA-1498] Length = 122 Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats. Identities = 36/109 (33%), Positives = 67/109 (61%) Query: 5 YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64 Y + +++ ++ R+RE ++ DR I LL A P S +A +A+ + ++WV+ I+DL Sbjct: 6 YEDVMEDDAMSARERERFLFDRCIKLLLAAKAKGPGSCEAKDAVQFARKLWVILIEDLGQ 65 Query: 65 EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 N LPQ +K +LISIG ++LKE +++ + + ++++ +RDGL Sbjct: 66 AANALPQALKASLISIGFFILKEIQKLDEGEITDFDVLVEISESIRDGL 114 >gi|163794166|ref|ZP_02188139.1| flagellar FlaF family protein [alpha proteobacterium BAL199] gi|159180780|gb|EDP65299.1| flagellar FlaF family protein [alpha proteobacterium BAL199] Length = 124 Score = 114 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 2/112 (1%) Query: 4 YYHETIQE-SSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDL 62 Y T ++ R E+ +L + L A + ++ + A+ +VW VF+ DL Sbjct: 6 AYRRTQGAVATQNGRDLEYRLLAQVTGALIKARDGMATLQERLNAILRNEKVWGVFLADL 65 Query: 63 VSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 DN LPQ++K + S+ L+V+KE + + + D+I + + GLK Sbjct: 66 NHPDNGLPQQLKGGIASLALFVMKETQLVIDTNA-PLDDLILINRQIMAGLK 116 >gi|294679040|ref|YP_003579655.1| flagellar FlaF family protein [Rhodobacter capsulatus SB 1003] gi|294477860|gb|ADE87248.1| flagellar FlaF family protein [Rhodobacter capsulatus SB 1003] Length = 125 Score = 114 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 45/114 (39%), Gaps = 3/114 (2%) Query: 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHK-SLPNSKQAVEALFYTSRVWVVFIQ 60 + Y Q + R E+ I R L A N V AL+ R+W Sbjct: 8 KTAYANPGQPT-RTLRGTEYEIFARVTHRLKQAAGLDKSNFPAVVRALYDNRRLWTTLAV 66 Query: 61 DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 D+ DN LP ++ + + + ++ + ++ S +ID+ + + GL+ Sbjct: 67 DVALPDNELPDTLRARIFYLNQFTQAHSAKVLKGEA-SIDVLIDINTAIMRGLR 119 >gi|149912825|ref|ZP_01901359.1| flagellar protein FlaF, putative [Roseobacter sp. AzwK-3b] gi|149813231|gb|EDM73057.1| flagellar protein FlaF, putative [Roseobacter sp. AzwK-3b] Length = 124 Score = 113 bits (284), Expect = 6e-24, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 48/104 (46%), Gaps = 1/104 (0%) Query: 11 ESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLP 70 ++ R E+ R L+ A K+ + + AL+ R+W++ D+ + N LP Sbjct: 16 RATNTPRDTEYDAFARVTRRLTAAAKTPGDVPELAAALYDNRRLWMILASDVALKSNPLP 75 Query: 71 QEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 ++K LI + + ++ K+ + + +I+V V GL+ Sbjct: 76 GDLKARLIYLAEFAEVHGRKVLAGKATA-EPLIEVNRAVMQGLQ 118 >gi|319406997|emb|CBI80634.1| Flaf protein [Bartonella sp. 1-1C] Length = 122 Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats. Identities = 35/109 (32%), Positives = 67/109 (61%) Query: 5 YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64 Y + +++ ++ R+RE ++ DR I LL A P + +A +A+ + ++WV+ I+DL Sbjct: 6 YEDVMEDDAMSARERERFLFDRCIKLLLAAKAKGPGTCEAKDAVQFARKLWVILIEDLGQ 65 Query: 65 EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 N LPQ +K +LISIG ++LKE +++ + + ++++ +RDGL Sbjct: 66 AANALPQALKASLISIGFFILKEIQKLDEGEITDFDVLVEISESIRDGL 114 >gi|319898659|ref|YP_004158752.1| Flaf protein [Bartonella clarridgeiae 73] gi|319402623|emb|CBI76168.1| Flaf protein [Bartonella clarridgeiae 73] Length = 122 Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats. Identities = 36/109 (33%), Positives = 67/109 (61%) Query: 5 YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64 Y + +++ ++ R+RE ++ DR I LL A P + +A EA+ + ++WV+ I+DL Sbjct: 6 YEDVMEDDAMSARERERFLFDRCIKLLLDAKMKGPGTCEAKEAVQFARKLWVILIEDLGQ 65 Query: 65 EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 N LPQ +K +LISIG ++LKE +++ + + ++++ +RDGL Sbjct: 66 AANALPQALKASLISIGFFILKEIQKLDEGEITDFDVLVEISESIRDGL 114 >gi|158422274|ref|YP_001523566.1| flagellar biosynthesis regulatory protein FlaF [Azorhizobium caulinodans ORS 571] gi|158329163|dbj|BAF86648.1| flagellar FlaF protein [Azorhizobium caulinodans ORS 571] Length = 115 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 36/113 (31%), Positives = 68/113 (60%) Query: 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQD 61 + Y E +++SS E R RE DR++ LL A + ++ + A+ + R+W + I+D Sbjct: 3 KFSYAEILEDSSTESRARERDAFDRALELLVSAESAGLDTPECRAAMLFLQRLWGLLIRD 62 Query: 62 LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 L +N L E++ +L+SIGLW ++E +R+ S+++ +I++ +RDGL+ Sbjct: 63 LTDANNELAPELRADLVSIGLWNIREADRVLEQSSSNFSGLININRTIRDGLQ 115 >gi|163738068|ref|ZP_02145484.1| flagellar protein FlaF, putative [Phaeobacter gallaeciensis BS107] gi|161388684|gb|EDQ13037.1| flagellar protein FlaF, putative [Phaeobacter gallaeciensis BS107] Length = 123 Score = 113 bits (283), Expect = 8e-24, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 49/103 (47%), Gaps = 2/103 (1%) Query: 13 SIECRKREHWILDRSISLLSIAHKSL-PNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQ 71 + + E+ ++ R + A + P + AL ++W +F ++ S N LP Sbjct: 18 TRTAKNLEYEVIARVTRRMVAAAQKGKPGFTELAAALTDNRKLWSIFSVEVASPGNPLPD 77 Query: 72 EVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 E+K L+S+G + + ++ K+ + ++++ + + GL+ Sbjct: 78 ELKAQLLSLGEFTHQHTSKVLARKA-DVRLLVEINTAIMRGLR 119 >gi|322421644|ref|YP_004200867.1| flagellar FlaF family protein [Geobacter sp. M18] gi|320128031|gb|ADW15591.1| flagellar FlaF family protein [Geobacter sp. M18] Length = 131 Score = 113 bits (283), Expect = 9e-24, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 53/110 (48%), Gaps = 4/110 (3%) Query: 9 IQESSIECRKREHWILDRSISLLSIAHKSLPNSK---QAVEALFYTSRVWVVFIQDLVSE 65 IQ+ S+ R+ E +L ++ +L +S + ++A+ Y +VW F +L Sbjct: 13 IQKESMSGRELEASVLTKAGLMLKAVQESWDAPDRETKMLDAIKYNQKVWSFFQAELTEP 72 Query: 66 DNHLPQEVKLNLISIGLWVLKECERIRR-NKSNSYQDIIDVISIVRDGLK 114 + +P++++ +L+++ L+V K + +ID+ + GL+ Sbjct: 73 GHPMPKKLREDLLNLSLFVDKRFFEVMAFPTPEKLSIVIDINFNIAAGLR 122 >gi|209963551|ref|YP_002296466.1| flagellar protein FlaF, putative [Rhodospirillum centenum SW] gi|209957017|gb|ACI97653.1| flagellar protein FlaF, putative [Rhodospirillum centenum SW] Length = 124 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 3/110 (2%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63 Y ++++++ R+ EH + + + L + + + A+ R+W + DL Sbjct: 10 AYRQSMRDTV-SPRQLEHRVFSQVTAELEVCTRQPDAF-ATIRAVDRNRRLWGALVTDLA 67 Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 DN LP +K LIS+GLWV + + + +I+V V GL Sbjct: 68 QPDNLLPDALKAGLISLGLWVNRYSSEVLT-EGRPLNPLIEVNRTVMQGL 116 >gi|115523546|ref|YP_780457.1| flagellar biosynthesis regulatory protein FlaF [Rhodopseudomonas palustris BisA53] gi|115517493|gb|ABJ05477.1| flagellar FlaF family protein [Rhodopseudomonas palustris BisA53] Length = 121 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 51/113 (45%), Gaps = 3/113 (2%) Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSK-QAVEALFYTSRVWVVFIQD 61 Q Y T Q+ R E L ++ L + P EAL + ++W +F+ D Sbjct: 6 QAYARTAQK-VATPRDIEAQALLKAARKLQDVMATWPEGDVDFNEALMFNRKLWSLFVSD 64 Query: 62 LVSEDNHLPQEVKLNLISIGLWVLKECER-IRRNKSNSYQDIIDVISIVRDGL 113 + ++N E++ N+ +IG++VL + + + Q +ID+ + GL Sbjct: 65 ALRDENPESIEIRQNIANIGIFVLTQSAALALKPEVERLQALIDINRNIAAGL 117 >gi|254500444|ref|ZP_05112595.1| Flagellar protein FlaF [Labrenzia alexandrii DFL-11] gi|222436515|gb|EEE43194.1| Flagellar protein FlaF [Labrenzia alexandrii DFL-11] Length = 125 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 56/115 (48%), Gaps = 3/115 (2%) Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNS--KQAVEALFYTSRVWVVFIQ 60 Q Y +T Q + + R+ E +L ++ + L + + + +AL Y ++W V + Sbjct: 7 QAYQKTSQAAPVSPRELEATLLMKAAARLQLIKDEWDDLSLAEVDDALIYNRKLWTVLVT 66 Query: 61 DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRN-KSNSYQDIIDVISIVRDGLK 114 SE++ LP E+K N+ S+G++V K+ + +I + + +GL+ Sbjct: 67 SATSEESSLPLEIKNNIGSLGVFVFKQTMTVITTQDPEKLGALISINRTIAEGLR 121 >gi|254418530|ref|ZP_05032254.1| Flagellar protein FlaF [Brevundimonas sp. BAL3] gi|196184707|gb|EDX79683.1| Flagellar protein FlaF [Brevundimonas sp. BAL3] Length = 121 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 48/112 (42%), Gaps = 3/112 (2%) Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQ-AVEALFYTSRVWVVFIQD 61 Q Y + + R E+ + + L A ++AL + R+W D Sbjct: 4 QAY-KAATSRAETPRDLEYRLFGQVTRALVHASTVDERDLATRIDALDWNRRLWSTLASD 62 Query: 62 LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 N LP ++ +IS+ L++ + + R + ++QD+I++ ++ GL Sbjct: 63 CGDPANVLPASLRAQIISLSLFINRHSSAVMRGE-ETFQDLIEINRMMMQGL 113 >gi|319405424|emb|CBI79043.1| Flaf protein [Bartonella sp. AR 15-3] Length = 122 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 35/109 (32%), Positives = 67/109 (61%) Query: 5 YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64 Y + +++ ++ R+RE ++ DR I LL A P + +A +A+ + ++WV+ I+DL Sbjct: 6 YEDIMEDDAMSARERERFLFDRCIKLLLAAKAKGPGTCEAKDAVQFARKLWVILIEDLGQ 65 Query: 65 EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 N LPQ +K +LISIG ++LKE +++ + + ++++ +RDGL Sbjct: 66 AANALPQALKASLISIGFFILKEIQKLDEGEITDFDVLVEISESIRDGL 114 >gi|323136998|ref|ZP_08072078.1| flagellar FlaF family protein [Methylocystis sp. ATCC 49242] gi|322397759|gb|EFY00281.1| flagellar FlaF family protein [Methylocystis sp. ATCC 49242] Length = 115 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 39/112 (34%), Positives = 67/112 (59%) Query: 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQD 61 +Q Y E ES R +E L+ +I L++A P + +A EA Y R+W +F++D Sbjct: 3 QQRYAEIASESGKNARAKEREALEIAIKKLAVAKTRGPLTPEAFEATNYLRRLWAIFMED 62 Query: 62 LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 L +++N LP+ ++ +LISIGLW+ +E + I S ++ +I+V ++ DGL Sbjct: 63 LSNDENGLPESLRASLISIGLWIRREADLIDTGGSVNFDGLIEVNQLIADGL 114 >gi|253702413|ref|YP_003023602.1| flagellar biosynthesis regulatory protein FlaF [Geobacter sp. M21] gi|251777263|gb|ACT19844.1| flagellar FlaF family protein [Geobacter sp. M21] Length = 129 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 52/110 (47%), Gaps = 4/110 (3%) Query: 9 IQESSIECRKREHWILDRSISLLSIAHKSLP---NSKQAVEALFYTSRVWVVFIQDLVSE 65 IQ+ S+ R+ E +L ++ +L + + +EA+ Y +VW F +L Sbjct: 13 IQKESMSGRELEASVLTKAGLMLKAVQDNWDAPDREAKMLEAIKYNQKVWSFFQAELSEP 72 Query: 66 DNHLPQEVKLNLISIGLWVLKECERIRR-NKSNSYQDIIDVISIVRDGLK 114 + +P++++ +L+++ L+V K + +ID+ + GL+ Sbjct: 73 GHPMPKKLREDLLNLSLFVDKRFFEVMAFPSPEKLGIVIDINFNIAAGLR 122 >gi|85706200|ref|ZP_01037295.1| flagellar protein FlaF, putative [Roseovarius sp. 217] gi|85669364|gb|EAQ24230.1| flagellar protein FlaF, putative [Roseovarius sp. 217] Length = 124 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 43/111 (38%), Gaps = 3/111 (2%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSL-PNSKQAVEALFYTSRVWVVFIQDL 62 Y Q + R E+ R L +A + AL R+W + D+ Sbjct: 10 AYRNQAQ-TIRTERGLEYDAFARITHRLGLAAAKGREDIHNLAAALHDNRRLWTILATDV 68 Query: 63 VSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 DN LP+E++ ++ + + + + S Q +ID+ + + GL Sbjct: 69 ADPDNPLPKELRARIVYLAQFSHHHSTMVLNGDA-SIQPLIDINTAMMRGL 118 >gi|120266|sp|P21295|FLAF_CAUCR RecName: Full=Protein flaF gi|40421|emb|CAA33231.1| unnamed protein product [Caulobacter crescentus CB15] gi|13422828|gb|AAK23440.1| flaF protein [Caulobacter crescentus CB15] Length = 102 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 47/96 (48%), Gaps = 2/96 (2%) Query: 19 REHWILDRSISLLSIAHKSLPNSKQ-AVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNL 77 E+ + + L A ++ + ++AL + +VW D +N LP E++ ++ Sbjct: 1 MEYRLFGQVTRALMDASQAPADDIATRIDALDWNRKVWSALATDCALPENQLPMELRASI 60 Query: 78 ISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 IS+ LWV + + R K ++ +I++ ++ GL Sbjct: 61 ISLSLWVGRHSSAVMR-KEEDFEPLIEINRMIMQGL 95 >gi|39936974|ref|NP_949250.1| flagellar biosynthesis regulatory protein FlaF [Rhodopseudomonas palustris CGA009] gi|192292802|ref|YP_001993407.1| flagellar biosynthesis regulatory protein FlaF [Rhodopseudomonas palustris TIE-1] gi|39650831|emb|CAE29354.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009] gi|192286551|gb|ACF02932.1| flagellar FlaF family protein [Rhodopseudomonas palustris TIE-1] Length = 122 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 52/114 (45%), Gaps = 4/114 (3%) Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQ--AVEALFYTSRVWVVFIQ 60 Q Y T Q + R+ E L ++ L + EAL + ++W +F+ Sbjct: 6 QAYARTAQRT-ASPREIEAQALLKAAKQLQDVVTNWEEKGAIGLQEALLFNRKLWSIFVT 64 Query: 61 DLVSEDNHLPQEVKLNLISIGLWVLKECERI-RRNKSNSYQDIIDVISIVRDGL 113 + + +DN E++ N+ +IG++V+ + + + + Q +ID+ + GL Sbjct: 65 EAMRDDNPQSIEIRQNIANIGVFVMSQSSALQIKPEVERLQALIDINRNIAAGL 118 >gi|197120104|ref|YP_002140531.1| flagellar biosynthesis regulatory protein FlaF [Geobacter bemidjiensis Bem] gi|197089464|gb|ACH40735.1| flagellar biogenesis regulator FlaF [Geobacter bemidjiensis Bem] Length = 129 Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 53/110 (48%), Gaps = 4/110 (3%) Query: 9 IQESSIECRKREHWILDRSISLLSIAHKSLP---NSKQAVEALFYTSRVWVVFIQDLVSE 65 IQ+ S+ R+ E +L ++ +L + + +EA+ Y +VW F +L Sbjct: 13 IQKESMSGRELEASVLTKAGLMLKAVQDNWDAPDREAKMLEAIKYNQKVWSFFQAELSEP 72 Query: 66 DNHLPQEVKLNLISIGLWVLKECERIRR-NKSNSYQDIIDVISIVRDGLK 114 + +P++++ +L+++ L+V K + + ++D+ + GL+ Sbjct: 73 GHPMPKKLREDLLNLSLFVDKRFFEVMAFPSAEKLGIVVDINFNIAAGLR 122 >gi|99082813|ref|YP_614967.1| flagellar biosynthesis regulatory protein FlaF [Ruegeria sp. TM1040] gi|99039093|gb|ABF65705.1| FlaF protein [Ruegeria sp. TM1040] Length = 123 Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 48/103 (46%), Gaps = 2/103 (1%) Query: 13 SIECRKREHWILDRSISLLSIAHKSLPN-SKQAVEALFYTSRVWVVFIQDLVSEDNHLPQ 71 + R E+ IL R + +A + K V A+ ++W +F DL E N LP Sbjct: 18 TRTARNTEYEILARITHRMIVADSKGSDGFKDLVAAVSDNRKLWTLFTSDLAKEGNKLPT 77 Query: 72 EVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 E+K L + + + ++ K+ S Q ++++ + + GL+ Sbjct: 78 ELKQRLFHLARFTREHTSKVLARKA-SVQPLVEINTAIMRGLR 119 >gi|86750907|ref|YP_487403.1| flagellar biosynthesis regulatory protein FlaF [Rhodopseudomonas palustris HaA2] gi|86573935|gb|ABD08492.1| Flagellar FlaF [Rhodopseudomonas palustris HaA2] Length = 122 Score = 109 bits (274), Expect = 9e-23, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 49/114 (42%), Gaps = 4/114 (3%) Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQ--AVEALFYTSRVWVVFIQ 60 Q Y T Q + R+ E L ++ L S AL + ++W +F+ Sbjct: 6 QAYARTAQRT-ASPREIEAQALLKAARQLQDVVTSWDERGAIGLDAALMFNRKLWSIFVS 64 Query: 61 DLVSEDNHLPQEVKLNLISIGLWVLKECERI-RRNKSNSYQDIIDVISIVRDGL 113 D + +DN E++ N+ +IG++VL + + + +I++ + GL Sbjct: 65 DAMRDDNPQTLEIRQNIANIGVFVLSQSTALQMSPQVEPLNALIEINRNIAAGL 118 >gi|90422627|ref|YP_530997.1| flagellar biosynthesis regulatory protein FlaF [Rhodopseudomonas palustris BisB18] gi|90104641|gb|ABD86678.1| flagellar FlaF [Rhodopseudomonas palustris BisB18] Length = 115 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 44/110 (40%), Positives = 62/110 (56%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63 Y I++S E R RE L I LL+ S VEAL Y R+W F+ DL Sbjct: 5 SYDTVIEDSGQEARARERLALSHGIDLLTRLQSGDLRSPDDVEALLYIRRLWTFFVLDLS 64 Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 S N LP++++ +LISIG WV+KE +RIR+ K+ ++I V ++RD L Sbjct: 65 SPRNGLPEKLRADLISIGFWVIKEADRIRQEKATDIAELIAVNVVIRDSL 114 >gi|259418039|ref|ZP_05741958.1| flagellar biosynthesis regulatory protein FlaF [Silicibacter sp. TrichCH4B] gi|259346945|gb|EEW58759.1| flagellar biosynthesis regulatory protein FlaF [Silicibacter sp. TrichCH4B] Length = 123 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 2/103 (1%) Query: 13 SIECRKREHWILDRSISLLSIAHKSLPN-SKQAVEALFYTSRVWVVFIQDLVSEDNHLPQ 71 + R E+ IL R + +A+ + K V A+ ++W +F DL + N LP Sbjct: 18 TRTARNTEYEILARITHRMIVANGKGSDGFKDLVAAVSDNRKLWTLFTSDLAKDGNKLPD 77 Query: 72 EVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 E+K L + + + ++ K+ S Q ++++ + + GL+ Sbjct: 78 ELKQRLFHLARFTREHSSKVLARKA-SVQPLVEINTAIMRGLR 119 >gi|316932810|ref|YP_004107792.1| flagellar FlaF family protein [Rhodopseudomonas palustris DX-1] gi|315600524|gb|ADU43059.1| flagellar FlaF family protein [Rhodopseudomonas palustris DX-1] Length = 122 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 52/114 (45%), Gaps = 4/114 (3%) Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQ--AVEALFYTSRVWVVFIQ 60 Q Y T Q + R+ E L ++ L + EAL + ++W +F+ Sbjct: 6 QAYARTAQRT-ASPREIEAQALLKAAKQLQDVVTNWDEKGAIGLQEALMFNRKLWSIFVS 64 Query: 61 DLVSEDNHLPQEVKLNLISIGLWVLKECERI-RRNKSNSYQDIIDVISIVRDGL 113 + + +DN E++ N+ +IG++VL + + + + Q +ID+ + GL Sbjct: 65 EAMRDDNPQSIEIRQNIANIGVFVLSQSSALQIKPEVERLQALIDINRNIAAGL 118 >gi|220921350|ref|YP_002496651.1| flagellar FlaF family protein [Methylobacterium nodulans ORS 2060] gi|219945956|gb|ACL56348.1| flagellar FlaF family protein [Methylobacterium nodulans ORS 2060] Length = 121 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 46/114 (40%), Gaps = 3/114 (2%) Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQ-AVEALFYTSRVWVVFIQD 61 Y + Q ++ R+ E +L ++ + L + + EAL + +VW + Sbjct: 6 HAYAKVSQ-VALTPREAEAAVLIKAAARLQAVQDNWAEQQAGLNEALTFNQKVWTLLSTA 64 Query: 62 LVSEDNHLPQEVKLNLISIGLWVLKEC-ERIRRNKSNSYQDIIDVISIVRDGLK 114 D LP E+K ++ +G +V + + + +I + + GL+ Sbjct: 65 ATEPDAPLPPELKQSMARLGAFVFTRTFDAMVEPAAEKLTALIRINREIASGLR 118 >gi|91976151|ref|YP_568810.1| flagellar biosynthesis regulatory protein FlaF [Rhodopseudomonas palustris BisB5] gi|91682607|gb|ABE38909.1| flagellar FlaF [Rhodopseudomonas palustris BisB5] Length = 122 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 52/114 (45%), Gaps = 4/114 (3%) Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQ--AVEALFYTSRVWVVFIQ 60 Q Y T Q + R+ E L ++ L + EAL + ++W +F+ Sbjct: 6 QAYARTAQRT-ASPREIEAQALLKAARQLQDIVTNWSERGAIGLNEALMFNRKLWSIFVS 64 Query: 61 DLVSEDNHLPQEVKLNLISIGLWVLKECERI-RRNKSNSYQDIIDVISIVRDGL 113 D + +DN E++ N+ +IG++VL + + + + + +I++ + GL Sbjct: 65 DAMRDDNPQSIEIRQNIANIGVFVLSQSAALQMKAEVEPLKALIEINRNIAAGL 118 >gi|254475812|ref|ZP_05089198.1| flagellar protein FlaF, putative [Ruegeria sp. R11] gi|214030055|gb|EEB70890.1| flagellar protein FlaF, putative [Ruegeria sp. R11] Length = 123 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 52/103 (50%), Gaps = 2/103 (1%) Query: 13 SIECRKREHWILDRSISLLSIAHKSL-PNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQ 71 + + E+ ++ R + A + P K+ VEAL ++W +F ++ + +N LP+ Sbjct: 18 TRTAKNLEYEVIARITRRMVAAAQKGRPGFKELVEALKDNRKLWSIFADEVANPENPLPE 77 Query: 72 EVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 ++K L+ + + + ++ K+ + ++++ + + GL+ Sbjct: 78 DLKSQLLYLREFTNQHTSKVMARKA-DVRMLVEINTAIMRGLR 119 >gi|118581735|ref|YP_902985.1| flagellar biosynthesis regulatory protein FlaF [Pelobacter propionicus DSM 2379] gi|118504445|gb|ABL00928.1| flagellar FlaF family protein [Pelobacter propionicus DSM 2379] Length = 127 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 51/118 (43%), Gaps = 6/118 (5%) Query: 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSL---PNSKQAVEALFYTSRVWVVF 58 R Y + + + R+ E +L ++ L + + EA+ Y +VW F Sbjct: 5 RTAYEQ-QSKQFMSPRELEASVLTKAGLKLKQCQEKWNTPERNALLDEAIRYNQKVWSFF 63 Query: 59 IQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNK--SNSYQDIIDVISIVRDGLK 114 +L DN LPQ+++ +++++ L++ K + +ID+ + GL+ Sbjct: 64 QSELSMPDNPLPQKLREDILNLSLFIDKRLFEVLAFPNAPERLTIVIDINFNIAAGLR 121 >gi|149203154|ref|ZP_01880125.1| flagellar protein FlaF, putative [Roseovarius sp. TM1035] gi|149143700|gb|EDM31736.1| flagellar protein FlaF, putative [Roseovarius sp. TM1035] Length = 125 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 2/114 (1%) Query: 1 MRQYYHETIQESSIECRKREHWILDRSISLLS-IAHKSLPNSKQAVEALFYTSRVWVVFI 59 + Q + S R E+ R L A + + AL R+W + Sbjct: 6 LAQSAYRDQSRSVRTDRGLEYDAFARITQRLVHAAGQDPRDIASLAVALHDNRRLWTILA 65 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 D+ N LPQ ++ ++ + + + + S Q +ID+ + + GL Sbjct: 66 TDVADPQNPLPQSLRAQVVYLAQFCHHHSSAVLNTNA-SLQPLIDINTAIMRGL 118 >gi|189426400|ref|YP_001953577.1| flagellar biosynthesis regulatory protein FlaF [Geobacter lovleyi SZ] gi|189422659|gb|ACD97057.1| flagellar FlaF family protein [Geobacter lovleyi SZ] Length = 125 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 54/110 (49%), Gaps = 4/110 (3%) Query: 9 IQESSIECRKREHWILDRSISLLSIAHKSL---PNSKQAVEALFYTSRVWVVFIQDLVSE 65 +Q+ ++ R+ E +L R+ +L ++ ++ +EA+ + +VW F +L Sbjct: 12 MQKETLSGRELEASVLTRAGLMLKQVQENWAAPDRDEKLLEAIKFNQKVWSFFQAELSDP 71 Query: 66 DNHLPQEVKLNLISIGLWVLKECERIR-RNKSNSYQDIIDVISIVRDGLK 114 +N LP +K +++++ L++ K + + ++D+ + GL+ Sbjct: 72 ENPLPTALKQDILNLSLFIDKRLFEVMADPDKDKLTIVVDIDFNIAAGLR 121 >gi|254509559|ref|ZP_05121626.1| flagellar FlaF family protein [Rhodobacteraceae bacterium KLH11] gi|221533270|gb|EEE36258.1| flagellar FlaF family protein [Rhodobacteraceae bacterium KLH11] Length = 124 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 44/112 (39%), Gaps = 3/112 (2%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHK-SLPNSKQAVEALFYTSRVWVVFIQDL 62 Y ++ + R E+ + + L A + V+AL R+W V + Sbjct: 10 AYAQSAVPT-RTPRDTEYEAISKITHRLKAAAARKGTDFGGFVQALHENRRLWNVLATGV 68 Query: 63 VSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 +N LP ++ + + + ++ NK+ + ++++ V GL+ Sbjct: 69 ADTENALPSALRARIFYLAEFTEHHSSQVLGNKA-GVEPLLEINMAVLRGLR 119 >gi|126738587|ref|ZP_01754292.1| flagellar protein FlaF, putative [Roseobacter sp. SK209-2-6] gi|126720386|gb|EBA17092.1| flagellar protein FlaF, putative [Roseobacter sp. SK209-2-6] Length = 128 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 51/108 (47%), Gaps = 7/108 (6%) Query: 13 SIECRKREHWILDRSISLLSIA------HKSLPNSKQAVEALFYTSRVWVVFIQDLVSED 66 + + E+ ++ R+ L A K AL ++W +F DL++++ Sbjct: 18 TRTTKDNEYEVVARATHKLLAAHKVANAKSGPEGFKVLASALHTNRKMWNIFEVDLLAKE 77 Query: 67 NHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 N LPQEVK NL+ + + + ++ K+ + ++++ + + GL+ Sbjct: 78 NQLPQEVKTNLLYLAEFTRQHTSKVLSRKA-GIKPLVEINTAIMRGLR 124 >gi|144897700|emb|CAM74564.1| Flagellar FlaF [Magnetospirillum gryphiswaldense MSR-1] Length = 145 Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 52/113 (46%), Gaps = 4/113 (3%) Query: 5 YHETIQES---SIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQD 61 Y +T S R+ E W L + +S+A K ++ + A+ R+W +F + Sbjct: 6 YGQTPYNSVPQPGNPRQTEAWALTEAARRMSLAQKEGVATEDLLVAVRLNWRLWTIFQAE 65 Query: 62 LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNK-SNSYQDIIDVISIVRDGL 113 L E++ LP +++++++S+ ++ K I +I++ + GL Sbjct: 66 LSGEESALPDQMRMDMLSLCNFIDKRSVDIIAEPLPEKLDVLININRQIAAGL 118 >gi|254465480|ref|ZP_05078891.1| flagellar protein FlaF, putative [Rhodobacterales bacterium Y4I] gi|206686388|gb|EDZ46870.1| flagellar protein FlaF, putative [Rhodobacterales bacterium Y4I] Length = 123 Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 51/112 (45%), Gaps = 3/112 (2%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPN-SKQAVEALFYTSRVWVVFIQDL 62 Y + + + E+ ++ R L A + + + +AL ++W +F DL Sbjct: 10 AYS-AAKTPTRTAKNFEYEVVTRVTRRLITAAQKGSDGFNELAQALNDNRKLWSIFTADL 68 Query: 63 VSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 + N LP +K NL + + + ++ + K+ + + ++++ + + GL+ Sbjct: 69 AMKSNPLPDNLKQNLFELAEFTRQHTSKVLQRKA-NVRPLVEINTAILRGLR 119 >gi|12330683|gb|AAG52880.1| FlaF [Brucella abortus] Length = 104 Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats. Identities = 39/99 (39%), Positives = 66/99 (66%) Query: 5 YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64 Y + + + ++RE + DRSI++L A + S++ ++A ++TS++W I DL S Sbjct: 6 YEDVMNDDMASAKERERMLFDRSIAMLEAARANGAESREGIDAAYFTSKLWTTIIDDLGS 65 Query: 65 EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDII 103 E+N LP+E++ +ISIG++VLKE ERIR+ +SN Y +I Sbjct: 66 EENALPKELRAAIISIGIFVLKEIERIRQGESNDYATLI 104 >gi|110677571|ref|YP_680578.1| flagellar biosynthesis regulatory protein FlaF [Roseobacter denitrificans OCh 114] gi|109453687|gb|ABG29892.1| flagellar protein, putative [Roseobacter denitrificans OCh 114] Length = 123 Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 50/111 (45%), Gaps = 3/111 (2%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63 Y T Q R E+ ++ R + A + + EAL +++W D+ Sbjct: 10 AYAPT-QAPIKTARSTEYEVIARISHRMKRAMQQ-DDFPALAEALHENNKLWTTLAIDVG 67 Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 + DN LP E++ ++ + + + ++ R K+ + ++++ + + GLK Sbjct: 68 NPDNLLPDELRARIVYLADFTRQHSHKVMR-KTETAVPLLEINAAILKGLK 117 >gi|114798597|ref|YP_758996.1| putative flagellar biosynthesis regulatory protein [Hyphomonas neptunium ATCC 15444] gi|114738771|gb|ABI76896.1| putative flagellar biosynthesis regulatory protein [Hyphomonas neptunium ATCC 15444] Length = 128 Score = 106 bits (266), Expect = 8e-22, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 3/113 (2%) Query: 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAV-EALFYTSRVWVVFIQ 60 + Y + Q + R E+ + ++ L H + A +A++ ++W + Sbjct: 6 YKAYGQVTQRT-ATGRALEYAVFEQITRDLQSVHDDGGANTGAWGDAIYRNLQLWTIIAT 64 Query: 61 DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 DL+S +N LP E K LIS+ +V + +I +DII+V + GL Sbjct: 65 DLLSAENALPDETKAGLISLSEFVRRTSMKILSGT-EGLEDIIEVNRTIMAGL 116 >gi|209884515|ref|YP_002288372.1| flagellar FlaF [Oligotropha carboxidovorans OM5] gi|209872711|gb|ACI92507.1| flagellar FlaF [Oligotropha carboxidovorans OM5] Length = 121 Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 48/112 (42%), Gaps = 3/112 (2%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSK-QAVEALFYTSRVWVVFIQDL 62 Y Q ++ R+ E L ++ L + + AL + ++W + + + Sbjct: 7 AYARVAQ-TTSSPREIEAQALLKAARQLQDVMSNWGKADVDVSGALLFNRKLWSILLSAV 65 Query: 63 VSEDNHLPQEVKLNLISIGLWVLKECERI-RRNKSNSYQDIIDVISIVRDGL 113 S+++ E++ N+ +IG +V+ + + K + +I++ + GL Sbjct: 66 TSDESPQSIEIRQNIANIGTFVMTQTAEMQIAPKPELLKPLIEINCNLAAGL 117 >gi|15964435|ref|NP_384788.1| flagellar biosynthesis regulatory protein FlaF [Sinorhizobium meliloti 1021] gi|307318932|ref|ZP_07598363.1| flagellar FlaF family protein [Sinorhizobium meliloti AK83] gi|10998531|gb|AAG25961.1|AF300968_3 FlaF [Sinorhizobium meliloti] gi|15073612|emb|CAC45254.1| Putative flagellin synthesis regulator [Sinorhizobium meliloti 1021] gi|306895346|gb|EFN26101.1| flagellar FlaF family protein [Sinorhizobium meliloti AK83] Length = 115 Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats. Identities = 50/111 (45%), Positives = 81/111 (72%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63 Y E ++E + RE +LDRSI+LL A + +++A+EA+++T R+W+ FI+DL Sbjct: 5 AYAEIMEEGVAVSKDREKQVLDRSIALLQAAKEKDGYTREAIEAVYFTRRLWIRFIEDLR 64 Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 + DN L +E++ NLISIG+W+L E E+IR+ +S+++Q IID+ +I+RDGLK Sbjct: 65 APDNQLNEELRANLISIGIWILNETEKIRKRESSNFQGIIDITTIIRDGLK 115 >gi|163794169|ref|ZP_02188142.1| flagellar FlaF family protein [alpha proteobacterium BAL199] gi|159180783|gb|EDP65302.1| flagellar FlaF family protein [alpha proteobacterium BAL199] Length = 143 Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 59/119 (49%), Gaps = 9/119 (7%) Query: 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHK-------SLPNSKQAVEALFYTSRV 54 Y TI++++ R E+ +L + S L + + Q ++AL + ++V Sbjct: 4 YDAYKRTIKQTAA-PRDVEYRLLAQVTSGLMKSKELREGSNRDPRRMAQIMDALNWNNQV 62 Query: 55 WVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 W F++D+ +E N LP+E++ ++S+G+WV +E + + +I V + GL Sbjct: 63 WDAFVEDVGTEGNMLPRELRAAIVSLGIWVTRETALVTSGEG-DIDALIAVNRAIMRGL 120 >gi|299131798|ref|ZP_07024993.1| flagellar FlaF family protein [Afipia sp. 1NLS2] gi|298591935|gb|EFI52135.1| flagellar FlaF family protein [Afipia sp. 1NLS2] Length = 121 Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 47/112 (41%), Gaps = 3/112 (2%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSL-PNSKQAVEALFYTSRVWVVFIQDL 62 Y Q ++ R+ E L ++ L + AL + ++W + + + Sbjct: 7 AYARVAQ-TTSSPREIEAQALLKAARQLQDVMSNWGKAGTDVSGALLFNRKLWSILLSAV 65 Query: 63 VSEDNHLPQEVKLNLISIGLWVLKECERI-RRNKSNSYQDIIDVISIVRDGL 113 S+++ E++ N+ +IG +VL + + K + +I++ + GL Sbjct: 66 TSDESPQSIEIRQNIANIGTFVLSQTAEMQIAPKPELLKPLIEINCNLAAGL 117 >gi|304392490|ref|ZP_07374430.1| flagellar biosynthesis regulatory protein FlaF [Ahrensia sp. R2A130] gi|303295120|gb|EFL89480.1| flagellar biosynthesis regulatory protein FlaF [Ahrensia sp. R2A130] Length = 117 Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 44/111 (39%), Positives = 66/111 (59%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63 Y ET S R E +L +SI LL +A + SK AVEA+++T+R+W FI+DL Sbjct: 7 GYAETNANSGKAARAGERALLRQSIDLLKLAKEQGTQSKAAVEAVYFTNRLWTAFIEDLG 66 Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 E+N L ++ NLISIG+ +L+ RIR + +I++V I+ DGL+ Sbjct: 67 GEENRLEPTLRANLISIGISILRSTGRIREGDETAIDEIVEVSGIILDGLR 117 >gi|296531759|ref|ZP_06894581.1| possible flaF protein [Roseomonas cervicalis ATCC 49957] gi|296267898|gb|EFH13703.1| possible flaF protein [Roseomonas cervicalis ATCC 49957] Length = 141 Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 35/111 (31%), Positives = 49/111 (44%), Gaps = 2/111 (1%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63 Y I+ + + R E+ +L R+ SLL A + EA+ VW F DL Sbjct: 23 AYGSVIRGT-EDPRDIEYRVLARATSLLEAAQRPNAGPSALPEAIHENRMVWTAFAADLA 81 Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 +E+N K L+S+ WV E ER+ R S + DV V GLK Sbjct: 82 AEENGWDMVTKGRLLSLARWVFAESERVLRG-GRSPHALCDVNRAVMAGLK 131 >gi|150395506|ref|YP_001325973.1| flagellar biosynthesis regulatory protein FlaF [Sinorhizobium medicae WSM419] gi|150027021|gb|ABR59138.1| flagellar FlaF family protein [Sinorhizobium medicae WSM419] Length = 115 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 50/111 (45%), Positives = 81/111 (72%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63 Y E ++E + RE +LDRSI+LL A + +++A+EA+++T R+W+ FI+DL Sbjct: 5 AYAEIMEEGVAVSKDREKQVLDRSIALLQAAKEKNGYTREAIEAVYFTRRLWIRFIEDLR 64 Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 + DN L +E++ NLISIG+W+L E E+IR+ +S+++Q IID+ +I+RDGLK Sbjct: 65 APDNQLNEELRANLISIGIWILNETEKIRKRESSNFQGIIDITTIIRDGLK 115 >gi|163744337|ref|ZP_02151697.1| flaF protein [Oceanibulbus indolifex HEL-45] gi|161381155|gb|EDQ05564.1| flaF protein [Oceanibulbus indolifex HEL-45] Length = 134 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 48/121 (39%), Gaps = 13/121 (10%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQ-----------AVEALFYTS 52 Y TI+ES R+ E IL R L+ + ++ +AL+ Sbjct: 5 AYKRTIRES-ETPRQIERRILSRVTHDLAEKGQGFDATEDKSERLNILSTGLRDALYENQ 63 Query: 53 RVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDG 112 R W DL N +P +K +LISI LWV + + + ++++ + G Sbjct: 64 RFWSALRYDLAEPGNTMPDALKASLISIALWVERHSTALMAGEGR-LAGLVEINGNIAAG 122 Query: 113 L 113 L Sbjct: 123 L 123 >gi|114765256|ref|ZP_01444388.1| flaF protein [Pelagibaca bermudensis HTCC2601] gi|114542391|gb|EAU45419.1| flaF protein [Roseovarius sp. HTCC2601] Length = 145 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 50/121 (41%), Gaps = 13/121 (10%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQ-----------AVEALFYTS 52 Y +TI+ES ++ E + R + + ++ +A+ Sbjct: 5 AYKQTIRES-ASPKQIEARVFARITGSMEQHRANWLAARDKFARTAVLAHGLRDAVAENR 63 Query: 53 RVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDG 112 +W DL E+N LP E++ NL+SI +WV + C + + +IDV + G Sbjct: 64 VLWSRLRTDLTDENNQLPAELRANLLSIAMWVDRTCGVVIGG-GDGLPALIDVNQNILGG 122 Query: 113 L 113 L Sbjct: 123 L 123 >gi|163733163|ref|ZP_02140607.1| flagellar protein, putative [Roseobacter litoralis Och 149] gi|161393698|gb|EDQ18023.1| flagellar protein, putative [Roseobacter litoralis Och 149] Length = 123 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 49/111 (44%), Gaps = 3/111 (2%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63 Y T Q R E+ ++ R + A + + EAL +++W D+ Sbjct: 10 AYAPT-QAPIKTARSTEYEVIARISHRMKRAMQQ-DDFPALAEALHENNKLWTTLAIDVG 67 Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 + DN LP E++ ++ + + ++ R K+ + ++++ + + GLK Sbjct: 68 NPDNLLPDELRARIVYLADFTRLHSHKVMR-KTETAVPLLEINAAILKGLK 117 >gi|227820878|ref|YP_002824848.1| flagellar biosynthesis regulatory protein FlaF [Sinorhizobium fredii NGR234] gi|227339877|gb|ACP24095.1| predicted flagellar protein FlaF [Sinorhizobium fredii NGR234] Length = 115 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 52/111 (46%), Positives = 79/111 (71%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63 Y E ++E + RE +L+RSI+LL A + S++A+EA++YT RVW+ FI+DL Sbjct: 5 AYAEIMEEGVAVSKDREWQVLNRSIALLEAAKQQKGYSREAIEAIYYTRRVWIRFIEDLR 64 Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 + DN L E++ NLISIG+W+L E E+IR+ S+++Q IID+ +I+RDGLK Sbjct: 65 APDNQLNDELRANLISIGIWILNETEKIRKRDSSNFQGIIDITTIIRDGLK 115 >gi|27380953|ref|NP_772482.1| flagellar biosynthesis regulatory protein FlaF [Bradyrhizobium japonicum USDA 110] gi|27354119|dbj|BAC51107.1| bll5842 [Bradyrhizobium japonicum USDA 110] Length = 122 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 53/112 (47%), Gaps = 3/112 (2%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQA-VEALFYTSRVWVVFIQDL 62 Y ++ R E L ++ + L A + + ++AL + ++W +F+ + Sbjct: 8 AYARVA-TTTASPRDIEAQTLLKAANKLQDAVNNADPLSEQTMQALMFNRKLWTIFLSEA 66 Query: 63 VSEDNHLPQEVKLNLISIGLWVLKECERI-RRNKSNSYQDIIDVISIVRDGL 113 + ++N P +V+ + +I ++VL + + + + ++ +I++ + GL Sbjct: 67 MRDNNPQPIDVRQKIANISVFVLSQTAALQMSPQFDHFRPLIEINRNIAAGL 118 >gi|197104849|ref|YP_002130226.1| Flagellar biosynthesis regulator FlaF [Phenylobacterium zucineum HLK1] gi|196478269|gb|ACG77797.1| Flagellar biosynthesis regulator FlaF [Phenylobacterium zucineum HLK1] Length = 104 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 2/96 (2%) Query: 19 REHWILDRSISLLSIAHK-SLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNL 77 E+ + + L A K + K ++AL + RVW V D N LP+E++ ++ Sbjct: 1 MEYRLFAQVTRALMEAAKLPADDLKGRMDALDWNRRVWSVLGADCQQTGNGLPRELRASI 60 Query: 78 ISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 IS+ +WV K + R + + +I++ ++ GL Sbjct: 61 ISLSIWVGKHTSLVIRQQEE-IEPLIEINRMIMQGL 95 >gi|307311577|ref|ZP_07591218.1| flagellar FlaF family protein [Sinorhizobium meliloti BL225C] gi|306899594|gb|EFN30223.1| flagellar FlaF family protein [Sinorhizobium meliloti BL225C] Length = 115 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 49/111 (44%), Positives = 80/111 (72%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63 Y E ++E + RE +LDRSI+LL A + +++A+ A+++T R+W+ FI+DL Sbjct: 5 AYAEIMEEGVAVSKDREKQVLDRSIALLQAAKEKDGYTREAIAAVYFTRRLWIRFIEDLR 64 Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 + DN L +E++ NLISIG+W+L E E+IR+ +S+++Q IID+ +I+RDGLK Sbjct: 65 APDNQLNEELRANLISIGIWILNETEKIRKRESSNFQGIIDITTIIRDGLK 115 >gi|188579928|ref|YP_001923373.1| flagellar biosynthesis regulatory protein FlaF [Methylobacterium populi BJ001] gi|179343426|gb|ACB78838.1| flagellar FlaF family protein [Methylobacterium populi BJ001] Length = 116 Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats. Identities = 32/114 (28%), Positives = 59/114 (51%), Gaps = 1/114 (0%) Query: 2 RQYYHETIQESSIECRKREHWILDRSISLLS-IAHKSLPNSKQAVEALFYTSRVWVVFIQ 60 R Y E ++++ R+RE DR++ LL + + A+ +W V I Sbjct: 3 RLSYSEIMEDAPDLGREREREAFDRALGLLRTAEAQGAGAGAERNSAVGSIQELWNVLIS 62 Query: 61 DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 DL+ +N LP+ ++ +L++IGLW ++E + S +I+V + +RDGL+ Sbjct: 63 DLLDPENGLPEGLRADLVAIGLWNMREAGEVLSTPERSLSALIEVNTSIRDGLR 116 >gi|84502365|ref|ZP_01000501.1| hypothetical protein OB2597_20156 [Oceanicola batsensis HTCC2597] gi|84389177|gb|EAQ01974.1| hypothetical protein OB2597_20156 [Oceanicola batsensis HTCC2597] Length = 132 Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 45/121 (37%), Gaps = 13/121 (10%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLS-----------IAHKSLPNSKQAVEALFYTS 52 Y TI+ES R+ E + R L A ++ + L Sbjct: 5 AYKRTIRES-ESPRQIERRVFLRVTGELEKKSTPFDKAASRADRADLLAGGLRSHLAENL 63 Query: 53 RVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDG 112 ++W DL +N LP ++K LIS+ L+V ++ S ++ + + G Sbjct: 64 KLWSTIKHDLSQPENGLPVQLKAGLISLALFVERQTANCLGG-SAGLGVLVQINQNLISG 122 Query: 113 L 113 L Sbjct: 123 L 123 >gi|170751769|ref|YP_001758029.1| flagellar FlaF family protein [Methylobacterium radiotolerans JCM 2831] gi|170658291|gb|ACB27346.1| flagellar FlaF family protein [Methylobacterium radiotolerans JCM 2831] Length = 123 Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 54/114 (47%), Gaps = 4/114 (3%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAV--EALFYTSRVWVVFIQD 61 Y +T S++ R+ E +L ++ L A + L + EAL + RVW + + Sbjct: 7 AYAKT-SHSALSPREAESAVLLKAAQKLIGASQGLASGDAGRINEALTFNQRVWTLLTSE 65 Query: 62 LVSEDNHLPQEVKLNLISIGLWVLKEC-ERIRRNKSNSYQDIIDVISIVRDGLK 114 S+ N LP +VK + +G++VL+ C + + ++ + + + GL+ Sbjct: 66 ATSDVNPLPADVKQGVGRLGVFVLQSCIDTMIAPTPEKIATLVSINNHIAAGLQ 119 >gi|83944194|ref|ZP_00956650.1| flaF protein [Sulfitobacter sp. EE-36] gi|83845061|gb|EAP82942.1| flaF protein [Sulfitobacter sp. EE-36] Length = 133 Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 13/121 (10%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQ-----------AVEALFYTS 52 Y TI + + R+ E IL S L ++ + + + L+ Sbjct: 5 AYKRTISHT-EDPRQIERRILASVTSKLENKFEAFDGAAEKSQKLQMLADGLRDTLWENQ 63 Query: 53 RVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDG 112 RVW+ F DL +DN L +++ LIS+ LWV + + S + + +ID+ + DG Sbjct: 64 RVWLTFKADLAEKDNGLTADLRAALISLALWVENHTKAVLSG-SKNVKPLIDINRSIIDG 122 Query: 113 L 113 L Sbjct: 123 L 123 >gi|170739223|ref|YP_001767878.1| flagellar FlaF family protein [Methylobacterium sp. 4-46] gi|168193497|gb|ACA15444.1| flagellar FlaF family protein [Methylobacterium sp. 4-46] Length = 121 Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 48/113 (42%), Gaps = 3/113 (2%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQ-AVEALFYTSRVWVVFIQDL 62 Y + Q +++ R+ E +L ++ + L + + + EAL + +VW + Sbjct: 7 AYAKVAQ-AALTPREAEAAVLIKAAARLQAIQDNWTDQQAGLNEALTFNQKVWTLLSTAA 65 Query: 63 VSEDNHLPQEVKLNLISIGLWVLKEC-ERIRRNKSNSYQDIIDVISIVRDGLK 114 D LP ++K ++ +G +V + + + +I + + GL+ Sbjct: 66 TEPDAPLPADLKQSMAQLGAFVFTRTFDAMIEPHAEKLTALIRINRELASGLR 118 >gi|182680454|ref|YP_001834600.1| flagellar biosynthesis regulatory protein FlaF [Beijerinckia indica subsp. indica ATCC 9039] gi|182636337|gb|ACB97111.1| flagellar FlaF family protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 91 Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats. Identities = 32/91 (35%), Positives = 61/91 (67%) Query: 24 LDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLW 83 +D ++ LL A +S +EAL Y R+W + ++DL + DN LP+ ++ +L+S+G+W Sbjct: 1 MDHALDLLENARNKGASSIACIEALSYLCRLWTLLMEDLANPDNDLPEVLRADLLSVGIW 60 Query: 84 VLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 +LKE + I++ S++ +I++ +++RDGLK Sbjct: 61 ILKETDAIQKGTSDNLVGLIEICTLIRDGLK 91 >gi|90423003|ref|YP_531373.1| flagellar biosynthesis regulatory protein FlaF [Rhodopseudomonas palustris BisB18] gi|90105017|gb|ABD87054.1| flagellar FlaF [Rhodopseudomonas palustris BisB18] Length = 121 Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 52/113 (46%), Gaps = 3/113 (2%) Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNS-KQAVEALFYTSRVWVVFIQD 61 Q Y T Q+ R E L ++ L A + S AL + ++W +F+ D Sbjct: 6 QAYARTAQQ-IASPRDIEAQALLKAARQLQDAVTNWNESDSGLNAALIFNRKLWSIFVSD 64 Query: 62 LVSEDNHLPQEVKLNLISIGLWVLKECERI-RRNKSNSYQDIIDVISIVRDGL 113 +S+ N ++ N+ +IG++VL +C + + + + +I++ + GL Sbjct: 65 AISDANPEAIAIRQNIANIGIFVLTQCAALQVKPERDRLHALIEINRNIATGL 117 >gi|56698281|ref|YP_168654.1| flagellar biosynthesis regulatory protein FlaF [Ruegeria pomeroyi DSS-3] gi|56680018|gb|AAV96684.1| flagellar protein FlaF, putative [Ruegeria pomeroyi DSS-3] Length = 125 Score = 104 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 52/114 (45%), Gaps = 3/114 (2%) Query: 2 RQYYHETIQESSIECRKREHWILDRSISLL-SIAHKSLPNSKQAVEALFYTSRVWVVFIQ 60 RQ Y + R E+ +L R + S A + + VEAL +R+W V Sbjct: 8 RQAYS-AASAPTRTPRNMEYEVLSRITHRMHSAAKRGRAGFGELVEALHENNRLWGVLAA 66 Query: 61 DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 ++ +N LP +++ L + + ++ R +++ + ++++ + V GL+ Sbjct: 67 NVAEGENALPPDLRARLFYLAEFTQVHTSKVLRREASP-RPLLEINTAVLRGLR 119 >gi|114570513|ref|YP_757193.1| flagellar biosynthesis regulatory protein FlaF [Maricaulis maris MCS10] gi|114340975|gb|ABI66255.1| flagellar FlaF family protein [Maricaulis maris MCS10] Length = 126 Score = 104 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 3/112 (2%) Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNS-KQAVEALFYTSRVWVVFIQD 61 Q Y ++ + + R E+ + + L A S + +A+ + RVW D Sbjct: 4 QAYQKSAAR-AEDPRATEYRLFAQVTRSLMNAKSLPIESLQDRAQAIDWNRRVWSNLALD 62 Query: 62 LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 S+DN LP+ ++ +IS+ ++V K+ RN + D++D+ V GL Sbjct: 63 CASQDNKLPEALRAAIISLSIFVSKQGSHAMRNP-EAIDDLVDINRTVMQGL 113 >gi|312115277|ref|YP_004012873.1| flagellar FlaF family protein [Rhodomicrobium vannielii ATCC 17100] gi|311220406|gb|ADP71774.1| flagellar FlaF family protein [Rhodomicrobium vannielii ATCC 17100] Length = 115 Score = 103 bits (258), Expect = 7e-21, Method: Composition-based stats. Identities = 46/110 (41%), Positives = 64/110 (58%) Query: 5 YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64 Y E + R E + RSI+LL ++ S +A+EAL YT R+WV FI+ L Sbjct: 6 YQEALATDVRMARSTERASILRSINLLQRGAEAGSRSAEAIEALLYTKRLWVFFIEQLGL 65 Query: 65 EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 DN LP +++ +LISIG+ VL+ E IRR +S + IIDV V +GLK Sbjct: 66 PDNRLPHKLRADLISIGIAVLRRIEAIRRGESKDFGFIIDVSRSVAEGLK 115 >gi|83955106|ref|ZP_00963762.1| flaF protein [Sulfitobacter sp. NAS-14.1] gi|83840435|gb|EAP79608.1| flaF protein [Sulfitobacter sp. NAS-14.1] Length = 133 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 13/121 (10%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQ-----------AVEALFYTS 52 Y TI + + R+ E IL S L ++ + + + L+ Sbjct: 5 AYKRTISHT-EDPRQIERRILASVTSKLENKFEAFDGAAEKSQKLQMLADGLRDTLWENQ 63 Query: 53 RVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDG 112 RVW+ F DL +DN L +++ LIS+ LWV + + S + + +ID+ + +G Sbjct: 64 RVWLTFKADLAEKDNGLTADLRAALISLALWVENHTKAVLSG-SKNVKPLIDINRSIING 122 Query: 113 L 113 L Sbjct: 123 L 123 >gi|188580879|ref|YP_001924324.1| flagellar FlaF family protein [Methylobacterium populi BJ001] gi|179344377|gb|ACB79789.1| flagellar FlaF family protein [Methylobacterium populi BJ001] Length = 124 Score = 103 bits (257), Expect = 9e-21, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 43/112 (38%), Gaps = 2/112 (1%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63 Y + + ++ R+ E +L ++ L + EAL + RVW + Sbjct: 7 AYAKVAR-VALSPREAEAAVLLKAAGRLQALGAGVEAGPALNEALGFNQRVWTILASAAT 65 Query: 64 SEDNHLPQEVKLNLISIGLWVLKEC-ERIRRNKSNSYQDIIDVISIVRDGLK 114 N LP +V+ + + +V + + + ++ + + + GL+ Sbjct: 66 DPANPLPVDVRHGMAQLSAYVFHTIMDTMIEPTREKIESLVSLNNHIAAGLQ 117 >gi|126464888|ref|YP_001041864.1| flagellar biosynthesis regulatory protein FlaF [Rhodobacter sphaeroides ATCC 17029] gi|126106703|gb|ABN79228.1| flagellar FlaF family protein [Rhodobacter sphaeroides ATCC 17029] Length = 121 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 51/113 (45%), Gaps = 2/113 (1%) Query: 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLP-NSKQAVEALFYTSRVWVVFIQ 60 R Y Q S+ R E+ +L + +LL + +A+ ++W+ F Sbjct: 3 RTAYSAASQGSARTPRSTEYALLAKVTALLKETDRHDALAFPALAQAIEQNRKLWLRFAL 62 Query: 61 DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 D+ DN LP++++ + + V + R+ +++++ ++D+ V GL Sbjct: 63 DVAHPDNELPRDLRARIFYLYEIVQQHSARVLAHRADT-GLLVDINRAVMRGL 114 >gi|154252991|ref|YP_001413815.1| flagellar FlaF family protein [Parvibaculum lavamentivorans DS-1] gi|154156941|gb|ABS64158.1| flagellar FlaF family protein [Parvibaculum lavamentivorans DS-1] Length = 125 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 50/116 (43%), Gaps = 5/116 (4%) Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPN--SKQAVEALFYTSRVWVVFIQ 60 Y + ++ + R+ E IL R+ L + N + +AL Y R+W VF Sbjct: 6 DAYANASRMATKDPREFEATILTRAAGQLQRIRDNWTNETASALRDALLYNRRIWTVFAA 65 Query: 61 DLVSEDNHLPQEVKLNLISIGLWVLKECERI---RRNKSNSYQDIIDVISIVRDGL 113 +++ LP+E+K N+ ++ +++ K I R +I + + GL Sbjct: 66 SAAEKEHPLPREIKQNIANLAIFIFKRTSEIESSREPAPQLLDTLIMINREIAAGL 121 >gi|119384358|ref|YP_915414.1| flagellar FlaF family protein [Paracoccus denitrificans PD1222] gi|119374125|gb|ABL69718.1| flagellar FlaF family protein [Paracoccus denitrificans PD1222] Length = 121 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 2/98 (2%) Query: 17 RKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLN 76 R E++ + L A +S +EA ++++W + +L+ +N LP ++K Sbjct: 21 RDNEYFAFSQVTQTLKRACQSGDRYL-MIEAAHSSNQLWTIVATNLMHPENTLPSDIKAG 79 Query: 77 LISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 L+S+ + LK+ + +I+V + GL+ Sbjct: 80 LLSLAFFSLKQGHHVIS-SGVPADPLIEVNMRIMRGLR 116 >gi|288962698|ref|YP_003452992.1| FliL protein [Azospirillum sp. B510] gi|288914964|dbj|BAI76448.1| FliL protein [Azospirillum sp. B510] Length = 132 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 50/111 (45%), Gaps = 2/111 (1%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63 YH+TI E + RK E+ + R L + S +AL+ +W DL+ Sbjct: 5 AYHQTIAE-CDDPRKIEYRVFLRITLALEQNRDADWRSAALKDALWRNLELWNALRADLL 63 Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 + N LP+ ++ L+S+ V + +R+ R + ++ + V GL+ Sbjct: 64 EDGNALPEALRAGLVSLSFAVNRNTQRVLRGEG-GIDLLLHINRSVMQGLQ 113 >gi|221634510|ref|YP_002523198.1| FlaF protein [Rhodobacter sphaeroides KD131] gi|221163383|gb|ACM04345.1| FlaF protein [Rhodobacter sphaeroides KD131] Length = 126 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 51/113 (45%), Gaps = 2/113 (1%) Query: 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLP-NSKQAVEALFYTSRVWVVFIQ 60 R Y Q S+ R E+ +L + +LL + +A+ ++W+ F Sbjct: 8 RTAYSAARQGSARTPRSTEYALLAKVTALLKETDRHDALAFPALAQAIEQNRKLWLRFAL 67 Query: 61 DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 D+ DN LP++++ + + V + R+ +++++ ++D+ V GL Sbjct: 68 DVAHPDNELPRDLRARIFYLYEIVQQHSARVLAHRADT-GLLVDINRAVMRGL 119 >gi|114762155|ref|ZP_01441623.1| flagellar protein FlaF, putative [Pelagibaca bermudensis HTCC2601] gi|114545179|gb|EAU48182.1| flagellar protein FlaF, putative [Roseovarius sp. HTCC2601] Length = 125 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 49/104 (47%), Gaps = 2/104 (1%) Query: 11 ESSIECRKREHWILDRSISLLSIAHKSLPNS-KQAVEALFYTSRVWVVFIQDLVSEDNHL 69 S+ R E+ +L R + A ++ P + + V AL+ R+W D+ S +N L Sbjct: 16 TSTRTDRAIEYDLLARVTHRIKSAAEAGPKAYPRLVRALYDNRRLWTALAVDVASTENAL 75 Query: 70 PQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 PQE++ + + +V ++ K+ +++V + + GL Sbjct: 76 PQELRAQIFYLAEFVQLHTGKVLARKAR-LAPLLEVNAAILRGL 118 >gi|125654645|ref|YP_001033839.1| flagellar biosynthesis regulatory protein FlaF [Rhodobacter sphaeroides 2.4.1] gi|332561332|ref|ZP_08415647.1| flagellar biosynthesis regulatory protein FlaF [Rhodobacter sphaeroides WS8N] gi|77386305|gb|ABA81734.1| possible FlaF protein [Rhodobacter sphaeroides 2.4.1] gi|332274131|gb|EGJ19448.1| flagellar biosynthesis regulatory protein FlaF [Rhodobacter sphaeroides WS8N] Length = 121 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 51/113 (45%), Gaps = 2/113 (1%) Query: 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLP-NSKQAVEALFYTSRVWVVFIQ 60 R Y Q S+ R E+ +L + +LL + +A+ ++W+ F Sbjct: 3 RTAYSAARQGSARTPRSTEYALLAKVTALLKETDRHDALAFPALAQAIEQNRKLWLRFAL 62 Query: 61 DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 D+ DN LP++++ + + V + R+ +++++ ++D+ V GL Sbjct: 63 DVAHPDNELPRDLRARIFYLYEIVQQHSARVLAHRADT-GLLVDINRAVMRGL 114 >gi|254559271|ref|YP_003066366.1| flagellar protein FlaF [Methylobacterium extorquens DM4] gi|254266549|emb|CAX22313.1| Flagellar protein FlaF [Methylobacterium extorquens DM4] Length = 116 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 34/114 (29%), Positives = 60/114 (52%), Gaps = 1/114 (0%) Query: 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEA-LFYTSRVWVVFIQ 60 R Y E ++++ R+RE DR++S L A + A A + +W V I Sbjct: 3 RLSYAEIMEDAPDLGRERERDAFDRALSQLRTAEAQGAAAGPARSAAVGSIQDLWNVLIA 62 Query: 61 DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 DL+ +N LP+ ++ +L++IGLW ++E + S +I+V + +RDGL+ Sbjct: 63 DLLDPENALPESLRADLVAIGLWNMREAGEVLSTPDRSLAALIEVNTSIRDGLQ 116 >gi|163850126|ref|YP_001638169.1| flagellar biosynthesis regulatory protein FlaF [Methylobacterium extorquens PA1] gi|218528730|ref|YP_002419546.1| flagellar biosynthesis regulatory protein FlaF [Methylobacterium chloromethanicum CM4] gi|240137260|ref|YP_002961729.1| Flagellar protein FlaF [Methylobacterium extorquens AM1] gi|163661731|gb|ABY29098.1| flagellar FlaF family protein [Methylobacterium extorquens PA1] gi|218521033|gb|ACK81618.1| flagellar FlaF family protein [Methylobacterium chloromethanicum CM4] gi|240007226|gb|ACS38452.1| Flagellar protein FlaF [Methylobacterium extorquens AM1] Length = 116 Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats. Identities = 34/114 (29%), Positives = 60/114 (52%), Gaps = 1/114 (0%) Query: 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEA-LFYTSRVWVVFIQ 60 R Y E ++++ R+RE DR++S L A + A A + +W V I Sbjct: 3 RLSYAEIMEDAPDLGRERERDAFDRALSQLRTAEAQGAAAGPARSAAVGSIQDLWNVLIA 62 Query: 61 DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 DL+ +N LP+ ++ +L++IGLW ++E + S +I+V + +RDGL+ Sbjct: 63 DLLDPENALPESLRADLVAIGLWNMREAGEVLSAPDRSLAALIEVNTSIRDGLQ 116 >gi|163742536|ref|ZP_02149922.1| flagellar protein FlaF, putative [Phaeobacter gallaeciensis 2.10] gi|161384121|gb|EDQ08504.1| flagellar protein FlaF, putative [Phaeobacter gallaeciensis 2.10] Length = 88 Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 41/82 (50%), Gaps = 1/82 (1%) Query: 33 IAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIR 92 A K P + AL ++W +F ++ S N LP E+K L+S+G + + ++ Sbjct: 4 AAQKGKPGFTELAAALTDNRKLWSIFSVEVASPGNPLPDELKAQLLSLGEFTHQHTSKVL 63 Query: 93 RNKSNSYQDIIDVISIVRDGLK 114 K+ + ++++ + + GL+ Sbjct: 64 ARKA-DVRLLVEINTAIMRGLR 84 >gi|159045900|ref|YP_001534694.1| flagellar biosynthesis regulatory protein FlaF [Dinoroseobacter shibae DFL 12] gi|157913660|gb|ABV95093.1| flagellar biosynthesis regulatory protein FlaF [Dinoroseobacter shibae DFL 12] Length = 123 Score = 99.9 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 43/102 (42%), Gaps = 2/102 (1%) Query: 12 SSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQ 71 ++ + E+ + + S L + KS + +A+ R+W+ D+ + N+LP Sbjct: 17 ATRTEQSIEYELFAKMTSALVQSSKSG-KFEAIAKAVHDNRRLWLALAADVSDDANNLPV 75 Query: 72 EVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 E++ + + + ++ K ++++ + GL Sbjct: 76 ELRAQVFYLAEFTQHHSSKVLTEKV-PVDPLVEINRSIMSGL 116 >gi|304321142|ref|YP_003854785.1| flagellar protein FlaF [Parvularcula bermudensis HTCC2503] gi|303300044|gb|ADM09643.1| flagellar protein FlaF, putative [Parvularcula bermudensis HTCC2503] Length = 127 Score = 99.9 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 54/113 (47%), Gaps = 3/113 (2%) Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAH-KSLPNSKQAVEALFYTSRVWVVFIQD 61 Y + ++S+ R+ E +L + + ++ A + ++ V A+ +W I D Sbjct: 7 HGYAQV-RKSTASGREVEIQLLTKIAAEMANADPSTPEGFRELVTAVHRNMEMWTALIVD 65 Query: 62 LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 L+ E+N + Q +K+ L+ +G + L ++ ++ + +I + + GLK Sbjct: 66 LLQEENKIDQTLKVGLLKLGQFSLVHSRKVVCRQAEP-EVLISINRQIAAGLK 117 >gi|86139474|ref|ZP_01058043.1| flagellar protein FlaF, putative [Roseobacter sp. MED193] gi|85823977|gb|EAQ44183.1| flagellar protein FlaF, putative [Roseobacter sp. MED193] Length = 128 Score = 98.7 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 7/103 (6%) Query: 18 KREHWILDRSISLLSIAHKSLPNSKQ------AVEALFYTSRVWVVFIQDLVSEDNHLPQ 71 +E+ I+ RS L AHK +K EAL ++W +F DL S DN LPQ Sbjct: 23 DKEYDIVARSTQNLLAAHKVASANKGTEGFKVLTEALHKNRKMWNIFTADLASSDNQLPQ 82 Query: 72 EVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 +VK NL + + + ++ K+ + + +I++ V GL+ Sbjct: 83 DVKDNLFYLAEFTRQHTSKVLSRKA-NVRALIEINMAVLRGLR 124 >gi|83594188|ref|YP_427940.1| putative flagellar protein FlaF [Rhodospirillum rubrum ATCC 11170] gi|83577102|gb|ABC23653.1| putative flagellar protein FlaF [Rhodospirillum rubrum ATCC 11170] Length = 104 Score = 98.3 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 42/94 (44%), Gaps = 1/94 (1%) Query: 22 WILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIG 81 ++ +L A + +AL + +W + D+ N LP E+K N++S+ Sbjct: 1 MAFTKAAVMLEEARTKPNDKTAFSQALRFNHLLWTIIQADITEPANTLPPELKANIMSLS 60 Query: 82 LWVLKECER-IRRNKSNSYQDIIDVISIVRDGLK 114 L+V ++ +R + + +I + + GL+ Sbjct: 61 LFVDRQTTASLRSGEVGELEILISINRNLAAGLR 94 >gi|163851039|ref|YP_001639082.1| flagellar FlaF family protein [Methylobacterium extorquens PA1] gi|218529868|ref|YP_002420684.1| flagellar FlaF family protein [Methylobacterium chloromethanicum CM4] gi|240138172|ref|YP_002962644.1| putative flagellar protein FlaF [Methylobacterium extorquens AM1] gi|254560732|ref|YP_003067827.1| flagellar protein FlaF [Methylobacterium extorquens DM4] gi|163662644|gb|ABY30011.1| flagellar FlaF family protein [Methylobacterium extorquens PA1] gi|218522171|gb|ACK82756.1| flagellar FlaF family protein [Methylobacterium chloromethanicum CM4] gi|240008141|gb|ACS39367.1| putative flagellar protein FlaF [Methylobacterium extorquens AM1] gi|254268010|emb|CAX23878.1| putative flagellar protein FlaF [Methylobacterium extorquens DM4] Length = 124 Score = 98.3 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 44/112 (39%), Gaps = 2/112 (1%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63 Y + ++ R+ E +L ++ L + +AL + RVW + Sbjct: 7 AYAK-ASRVALSPREAEAAVLLKAAGRLQSLGSQVEAGPALNDALTFNQRVWTILASAAT 65 Query: 64 SEDNHLPQEVKLNLISIGLWVLKEC-ERIRRNKSNSYQDIIDVISIVRDGLK 114 + LP EV+ ++ + +V + + + + ++ + + + GL+ Sbjct: 66 EPSSPLPVEVRTSMAQLSAYVFHTILDTMIEPTAQKIESLVSLNNHIAAGLQ 117 >gi|260432288|ref|ZP_05786259.1| flagellar biosynthesis regulatory protein FlaF [Silicibacter lacuscaerulensis ITI-1157] gi|260416116|gb|EEX09375.1| flagellar biosynthesis regulatory protein FlaF [Silicibacter lacuscaerulensis ITI-1157] Length = 124 Score = 98.3 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 45/112 (40%), Gaps = 3/112 (2%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSL-PNSKQAVEALFYTSRVWVVFIQDL 62 Y ++ + R E+ + + L A + V+AL R+W V + Sbjct: 10 AYAQSAAPT-RTPRDTEYEAISKITHRLKAAAARKASDYSGFVQALHDNRRLWSVLANGV 68 Query: 63 VSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 DN LP +++ + + + + ++ K+ + ++++ V GL+ Sbjct: 69 ADSDNALPNDLRARIFYLSEFTEQHTGQVLAKKA-DVEPLLEINLAVLRGLR 119 >gi|209967004|ref|YP_002299919.1| flagellar protein FlaF, putative [Rhodospirillum centenum SW] gi|209960470|gb|ACJ01107.1| flagellar protein FlaF, putative [Rhodospirillum centenum SW] Length = 138 Score = 98.0 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 3/109 (2%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63 Y + + + E L A S + + AL ++W+ + DL Sbjct: 5 SYQQRAA-TQETAQSLELRAFGFVTQGLRQASTSP-DPTARIRALHRNHQLWLTLVSDLA 62 Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDG 112 + +N LP+E+K LIS+G+W ++ R +IDV + + G Sbjct: 63 TPENPLPEELKGRLISLGMWSMRYSLRAMEEDI-PVDPLIDVNTEIAGG 110 >gi|89056693|ref|YP_512144.1| flagellar biosynthesis regulatory protein FlaF [Jannaschia sp. CCS1] gi|88866242|gb|ABD57119.1| flagellar protein FlaF putative [Jannaschia sp. CCS1] Length = 124 Score = 97.2 bits (241), Expect = 6e-19, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 43/101 (42%), Gaps = 1/101 (0%) Query: 13 SIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQE 72 R E+ + L+ + ++ + AL ++W + DL DN LPQ Sbjct: 18 VRTERGTEYAAFQSVTARLNKSRRADAPMSERAAALHDNRKLWTILASDLADSDNGLPQS 77 Query: 73 VKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 ++ L + + L + + ++++ +++V + V GL Sbjct: 78 LRAQLFYLAEFSLLQSRKALS-EADALTALVEVNTAVMRGL 117 >gi|167043519|gb|ABZ08215.1| putative flagellar protein FlaF [uncultured marine microorganism HF4000_APKG2J17] Length = 125 Score = 97.2 bits (241), Expect = 6e-19, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 49/112 (43%), Gaps = 2/112 (1%) Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDL 62 Y T + ++ R E ++ LL+ A + AL + + + DL Sbjct: 7 DAYRRT-SKLALPPRAAEAEAFIKAARLLNQASAGPFDYDAYASALRFNQTLRTIIQADL 65 Query: 63 VSEDNHLPQEVKLNLISIGLWVLKECERIR-RNKSNSYQDIIDVISIVRDGL 113 + +HLP ++ +++++ L+V K+ + K+ +++++ + GL Sbjct: 66 GRDGSHLPAGLRSDILNLSLYVDKQTLKALSDPKAEYLGELMEIDRAIARGL 117 >gi|260574410|ref|ZP_05842414.1| flagellar FlaF family protein [Rhodobacter sp. SW2] gi|259023306|gb|EEW26598.1| flagellar FlaF family protein [Rhodobacter sp. SW2] Length = 126 Score = 97.2 bits (241), Expect = 7e-19, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 49/114 (42%), Gaps = 3/114 (2%) Query: 2 RQYYHETIQESSIECRKREHWILDRSISLLSIA-HKSLPNSKQAVEALFYTSRVWVVFIQ 60 R Y + + R E+ +L R+ L + + + AL R+W Sbjct: 9 RSAYAR-PEAPARTLRGIEYDLLARTTHQLKESWTRRKEDFSGFATALNDNLRLWSALAA 67 Query: 61 DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 D+ +N LP ++ L + + + + R++++ S + ++D+ + V GL+ Sbjct: 68 DVAEPENGLPAPLRAQLFYLYEFTAEHSRKARQDQA-SVEVLVDINTAVMRGLR 120 >gi|146341919|ref|YP_001206967.1| flagellar biosynthesis regulatory protein FlaF [Bradyrhizobium sp. ORS278] gi|146194725|emb|CAL78750.1| conserved hypothetical protein; putative FlaF protein [Bradyrhizobium sp. ORS278] Length = 96 Score = 95.6 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 45/92 (48%), Gaps = 2/92 (2%) Query: 24 LDRSISLLSIAHKSLPNS-KQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGL 82 + ++ L + + +AL + R+W +F+ + +EDN P +++ N+ +IG+ Sbjct: 1 MLKAARQLQEVQANWNGPDRNMYKALLFNRRLWTIFMSAMEAEDNPNPLDIRQNIANIGV 60 Query: 83 WVLKECERI-RRNKSNSYQDIIDVISIVRDGL 113 +V+K+ + + +ID+ + GL Sbjct: 61 FVMKQTIEMQMDPDPAKLKSLIDINCHIAAGL 92 >gi|148256807|ref|YP_001241392.1| flagellar biosynthesis regulatory protein FlaF [Bradyrhizobium sp. BTAi1] gi|146408980|gb|ABQ37486.1| hypothetical protein BBta_5526 [Bradyrhizobium sp. BTAi1] Length = 96 Score = 95.3 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 42/92 (45%), Gaps = 2/92 (2%) Query: 24 LDRSISLLSIAHKSLPNS-KQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGL 82 + ++ L + + +AL + R+W +F+ + DN E++ N+ +IG+ Sbjct: 1 MLKAARQLQDVQANWNGPDRNMYKALLFNRRLWTIFMSAVEMNDNPNSIEIRQNIANIGV 60 Query: 83 WVLKECERI-RRNKSNSYQDIIDVISIVRDGL 113 +V+K+ + + +ID+ + GL Sbjct: 61 FVMKQTIEMQMDPDPAKLKSLIDINCHIAAGL 92 >gi|310816822|ref|YP_003964786.1| flagellar biosynthesis regulatory protein FlaF [Ketogulonicigenium vulgare Y25] gi|308755557|gb|ADO43486.1| flagellar biosynthesis regulatory protein FlaF [Ketogulonicigenium vulgare Y25] Length = 123 Score = 94.9 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 3/99 (3%) Query: 15 ECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVK 74 + R E I R + L A N V+AL R+W D+ S N LP +++ Sbjct: 20 DTRSTEQAIFSRITAALIAAE--GANFPTKVKALHDNRRLWTWLAADVASAQNQLPADLR 77 Query: 75 LNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 L + + L ++ R + +ID+ + GL Sbjct: 78 ARLFYLAEFTLDHSSKVLR-EGADLAPLIDINRAMLLGL 115 >gi|163758035|ref|ZP_02165123.1| putative flagellin synthesis regulator protein [Hoeflea phototrophica DFL-43] gi|162284324|gb|EDQ34607.1| putative flagellin synthesis regulator protein [Hoeflea phototrophica DFL-43] Length = 115 Score = 94.9 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 53/115 (46%), Positives = 82/115 (71%), Gaps = 1/115 (0%) Query: 1 MRQ-YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M Q Y + ++ E R+RE ++ SISLL+ A S++A+EA+++ SR+WV F+ Sbjct: 1 MYQFSYADVQEDGVAEAREREREAINHSISLLTAAKAKGVESREAIEAVYFVSRLWVRFV 60 Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 +DL S +N L +E++ NLISIG+W++KE ERIR+ +SN++Q IID+ I+RDGLK Sbjct: 61 EDLASPENQLEEELRANLISIGIWIIKESERIRKRESNNFQGIIDISIIIRDGLK 115 >gi|89068720|ref|ZP_01156106.1| hypothetical protein OG2516_06766 [Oceanicola granulosus HTCC2516] gi|89045683|gb|EAR51745.1| hypothetical protein OG2516_06766 [Oceanicola granulosus HTCC2516] Length = 132 Score = 93.7 bits (232), Expect = 8e-18, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 13/121 (10%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSK-----------QAVEALFYTS 52 Y TI+ES R+ E +L + + L A ++ + +AL Sbjct: 5 AYKRTIRES-ETPRQIERRVLAQLTARLEDAAQAYDTAATAPERIAILAGGLRDALAENV 63 Query: 53 RVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDG 112 VW+ F DL S N LP +++ LIS+ LW+ K+ RI + V V DG Sbjct: 64 TVWLHFRYDLSSPANELPPALRVQLISLSLWIEKQTNRILGG-GQGLVQLAAVNRSVVDG 122 Query: 113 L 113 L Sbjct: 123 L 123 >gi|328543142|ref|YP_004303251.1| flagellar protein FlaF [polymorphum gilvum SL003B-26A1] gi|326412888|gb|ADZ69951.1| Flagellar protein FlaF [Polymorphum gilvum SL003B-26A1] Length = 97 Score = 93.3 bits (231), Expect = 9e-18, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 42/92 (45%), Gaps = 3/92 (3%) Query: 26 RSISLLSIAHKSLPN--SKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLW 83 ++ + L + + +AL Y ++W V + ++HLPQ++K NL S+G++ Sbjct: 2 KAAARLQLIKDEWDGSSFAEKDDALAYNRKLWTVLVTSATGAESHLPQDLKNNLASLGVF 61 Query: 84 VLKECERIR-RNKSNSYQDIIDVISIVRDGLK 114 V K + +I + + +GL+ Sbjct: 62 VFKHTINVLIDPAPEKLDTLIFINRSIAEGLR 93 >gi|46200761|ref|ZP_00056442.2| hypothetical protein Magn03011143 [Magnetospirillum magnetotacticum MS-1] Length = 161 Score = 92.2 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 43/102 (42%), Gaps = 4/102 (3%) Query: 15 ECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSE-DNHLPQEV 73 R+ E W L + ++ A + P +AL ++W +F DL+ + + E Sbjct: 18 NPRETEAWALTEAARRMASASRGEPEG--MRDALRLNWKLWTIFQADLIGKVEAGETTET 75 Query: 74 KLNLISIGLWVLKECERIR-RNKSNSYQDIIDVISIVRDGLK 114 +N++S+ +V + + ++++ + GL+ Sbjct: 76 VVNMLSLCQFVDFHTVAALTEPDAPKLEVLVNINRNIASGLR 117 >gi|288962053|ref|YP_003452363.1| hypothetical protein AZL_c05260 [Azospirillum sp. B510] gi|288914333|dbj|BAI75819.1| hypothetical protein AZL_c05260 [Azospirillum sp. B510] Length = 181 Score = 90.3 bits (223), Expect = 9e-17, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 2/103 (1%) Query: 12 SSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQ 71 +S R E W L + IA + K EAL R+W +F + ED P Sbjct: 20 TSDNPRDVEAWALAEAARR-IIAASHAKDEKAFREALQLNQRLWTIFQAAITEEDCGHPP 78 Query: 72 EVKLNLISIGLWVLKE-CERIRRNKSNSYQDIIDVISIVRDGL 113 EV+ N+ ++ L V +E R+ ++++ V GL Sbjct: 79 EVRTNIAALSLLVDRETTNRLVDLDFGKIDTLVNINRNVASGL 121 >gi|83309790|ref|YP_420054.1| hypothetical protein amb0691 [Magnetospirillum magneticum AMB-1] gi|82944631|dbj|BAE49495.1| hypothetical protein [Magnetospirillum magneticum AMB-1] Length = 165 Score = 89.9 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 41/102 (40%), Gaps = 4/102 (3%) Query: 15 ECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDL-VSEDNHLPQEV 73 R+ E W L + ++ A + P E+L ++W +F DL + E Sbjct: 22 NPRETEAWALTEAARRMASASRGEPEG--MRESLRLNWKLWTIFQADLIGKAEAGEATET 79 Query: 74 KLNLISIGLWVLKECERIR-RNKSNSYQDIIDVISIVRDGLK 114 +N++S+ +V + + ++++ + GL+ Sbjct: 80 VVNMLSLCQFVDFHTVAALTEPDAAKLEVLVNINRNIASGLR 121 >gi|307945681|ref|ZP_07661017.1| protein FlaF [Roseibium sp. TrichSKD4] gi|307771554|gb|EFO30779.1| protein FlaF [Roseibium sp. TrichSKD4] Length = 97 Score = 89.5 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 3/92 (3%) Query: 26 RSISLLSIAHKSL--PNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLW 83 ++ + L + + Q +AL Y ++W + + + +N LPQE+K N+ S+G++ Sbjct: 2 KAAARLQLVKDEWQQTSLAQRDDALTYNRKLWTILVTSATNGENPLPQEIKNNIASLGVF 61 Query: 84 VLKECERIR-RNKSNSYQDIIDVISIVRDGLK 114 V K+ + N +I + + +GL+ Sbjct: 62 VFKQTMEAMTDEEGNKLNSLISINRAIAEGLR 93 >gi|118588728|ref|ZP_01546136.1| putative flagellar protein FlaF [Stappia aggregata IAM 12614] gi|118438714|gb|EAV45347.1| putative flagellar protein FlaF [Stappia aggregata IAM 12614] Length = 94 Score = 89.5 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 46/92 (50%), Gaps = 3/92 (3%) Query: 26 RSISLLSIAHKSLPNS--KQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLW 83 ++ + L + NS + +AL Y ++W + + S ++ LPQ++K N+ ++G++ Sbjct: 2 KAAARLQLIKDEWANSSLAEKDDALVYNRKLWTILVTSATSAESELPQDIKNNIATLGVF 61 Query: 84 VLKECERIRRNKSNS-YQDIIDVISIVRDGLK 114 V K+ + + +I + + +GL+ Sbjct: 62 VFKQTMTVMTTDDENKLDTLISINRSIAEGLR 93 >gi|144897636|emb|CAM74500.1| Flagellar FlaF [Magnetospirillum gryphiswaldense MSR-1] Length = 122 Score = 88.7 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 48/111 (43%), Gaps = 3/111 (2%) Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63 Y Q S + R+ + ++ +LL +S ++ AL R+W + L Sbjct: 12 AYGR-AQGSVLPLRQADALAFTQAANLLEDCLRSADRTQ-REAALKRNQRLWTQVQRLLS 69 Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIR-RNKSNSYQDIIDVISIVRDGL 113 D+ LP +V+ NL+ + ++ ++ + ++ + ++ + V GL Sbjct: 70 RSDHPLPADVRANLLDLSHFIDRQTVKALISGAADDLRPLVKINREVAAGL 120 >gi|254488350|ref|ZP_05101555.1| flagellar protein, putative [Roseobacter sp. GAI101] gi|214045219|gb|EEB85857.1| flagellar protein, putative [Roseobacter sp. GAI101] Length = 88 Score = 84.1 bits (207), Expect = 6e-15, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 38/84 (45%), Gaps = 2/84 (2%) Query: 31 LSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECER 90 + A + +EAL ++W ++ DN LP+E++ L + + Sbjct: 1 MKKAIEKKDLGP-LLEALHENRKLWRTLALNVSQSDNGLPEELRARLYYLSEFTNHHTSE 59 Query: 91 IRRNKSNSYQDIIDVISIVRDGLK 114 + RNK ++ +++V + + GLK Sbjct: 60 VIRNKISAI-PLVEVNTAILRGLK 82 >gi|126730143|ref|ZP_01745955.1| flagellar protein FlaF, putative [Sagittula stellata E-37] gi|126709523|gb|EBA08577.1| flagellar protein FlaF, putative [Sagittula stellata E-37] Length = 81 Score = 82.5 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 35/74 (47%), Gaps = 1/74 (1%) Query: 40 NSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSY 99 + VEAL R+W D+ E N LPQ+++ + + +V ++ ++ K Sbjct: 2 AYPKLVEALSDNQRLWTTLAIDVADEGNALPQDLRARIFYLAEFVQQQTSKVLTRKGR-I 60 Query: 100 QDIIDVISIVRDGL 113 ++++ + + GL Sbjct: 61 TPLLEINAAILKGL 74 >gi|126734098|ref|ZP_01749845.1| flagellar protein FlaF, putative [Roseobacter sp. CCS2] gi|126716964|gb|EBA13828.1| flagellar protein FlaF, putative [Roseobacter sp. CCS2] Length = 74 Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 1/69 (1%) Query: 45 VEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIID 104 + A+ R+W D+ + N LP+E++ + + + +++ R K++ +ID Sbjct: 1 MAAIHDNRRMWTTMAVDVADKGNALPKELRAQIFYLAEFTDHHSQQVIRGKADP-AALID 59 Query: 105 VISIVRDGL 113 + V GL Sbjct: 60 INMAVLKGL 68 >gi|46200759|ref|ZP_00056440.2| hypothetical protein Magn03011141 [Magnetospirillum magnetotacticum MS-1] Length = 124 Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 1/97 (1%) Query: 18 KREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNL 77 ++E L + L A S + + V AL + VWV S + LP ++K NL Sbjct: 15 EQEALSLAEAAIALDRARSSKDRAAELVAALNHNLEVWVAIRSLARSPGSPLPPDLKANL 74 Query: 78 ISIGLWVLKECERIRRNKSN-SYQDIIDVISIVRDGL 113 I + +V + S +I++ + +GL Sbjct: 75 IRLSEFVAHTTFTNGATIGDSSLNTLININMQLAEGL 111 >gi|58039254|ref|YP_191218.1| flagellin assembly protein [Gluconobacter oxydans 621H] gi|58001668|gb|AAW60562.1| Flagellin assembly protein [Gluconobacter oxydans 621H] Length = 140 Score = 79.1 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 6/109 (5%) Query: 5 YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64 Y + S + R+ E +LL+ A + V AL ++W + + Sbjct: 8 YQK-QSGSYLSSREVEVMAFRHVNALLTQASDH----EAKVAALAANLKLWSLLSLSVER 62 Query: 65 EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 D LP ++ +LI +G W ++ Q +ID+ + + +GL Sbjct: 63 VDCPLPPVLRDDLIKVGSWAMRYSNSAFNAP-KDLQPLIDINNDMIEGL 110 >gi|254469993|ref|ZP_05083397.1| flagellar FlaF [Pseudovibrio sp. JE062] gi|211960304|gb|EEA95500.1| flagellar FlaF [Pseudovibrio sp. JE062] Length = 99 Score = 76.0 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 14/92 (15%), Positives = 44/92 (47%), Gaps = 3/92 (3%) Query: 26 RSISLLSIAHKSLPNS--KQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLW 83 ++ + LS+ + ++ E L + +W +F+ + + + LP E++ N+ ++ L+ Sbjct: 2 KAAARLSVLQREWDTVSREERNETLIFNRTLWTIFVTEATASHSELPLELQNNIANLALF 61 Query: 84 VLKECERIRRN-KSNSYQDIIDVISIVRDGLK 114 + + + + + +I++ + GL+ Sbjct: 62 MFNRTIEMMGGEEPEALETMININKSLAAGLR 93 >gi|83309788|ref|YP_420052.1| hypothetical protein amb0689 [Magnetospirillum magneticum AMB-1] gi|82944629|dbj|BAE49493.1| hypothetical protein [Magnetospirillum magneticum AMB-1] Length = 124 Score = 76.0 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 1/97 (1%) Query: 18 KREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNL 77 ++E L + L A + + V AL + VWV S + LP ++K NL Sbjct: 15 EQEALSLAEAAIALDRARSGENRAAELVAALNHNLEVWVAIRSLARSPGSALPPDLKANL 74 Query: 78 ISIGLWVLKECERIRRNKSNS-YQDIIDVISIVRDGL 113 I + +V + +S +I++ + +GL Sbjct: 75 IRLSEFVAHTTFTNGASIGDSALNTLININMQLAEGL 111 >gi|83594178|ref|YP_427930.1| hypothetical protein Rru_A2846 [Rhodospirillum rubrum ATCC 11170] gi|83577092|gb|ABC23643.1| hypothetical protein Rru_A2846 [Rhodospirillum rubrum ATCC 11170] Length = 118 Score = 74.1 bits (181), Expect = 5e-12, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 2/95 (2%) Query: 20 EHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLIS 79 + + L + LS A + + AL ++WV + DN LPQ+VK NLI Sbjct: 17 DAFALTEAAVALSRALAT-ADKPALAAALEGNFQLWVGIRTLVSRSDNPLPQDVKDNLIR 75 Query: 80 IGLWVLKECERIRRN-KSNSYQDIIDVISIVRDGL 113 + + ++ + ++ + +I+ + +GL Sbjct: 76 LSQYTAQKTFELHDGVDEDTVESLINTNLQIAEGL 110 >gi|162147450|ref|YP_001601911.1| hypothetical protein GDI_1666 [Gluconacetobacter diazotrophicus PAl 5] gi|161786027|emb|CAP55609.1| hypothetical protein GDI1666 [Gluconacetobacter diazotrophicus PAl 5] Length = 132 Score = 74.1 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 44/111 (39%), Gaps = 2/111 (1%) Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDL 62 + Y ++I SS+ R+ + I L A S + AL + R+W + + Sbjct: 8 KAY-QSIAGSSLTGREADAACFRMLIDELKAAEAS-SDHTVRRHALARSQRLWAMIMNAN 65 Query: 63 VSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 V + PQE + +++ R + + +I + VRDGL Sbjct: 66 VQDSGLTPQEDRQLFVTLAHRSQLYGIRAMLDPALPLTPLIRIAENVRDGL 116 >gi|209545559|ref|YP_002277788.1| hypothetical protein Gdia_3448 [Gluconacetobacter diazotrophicus PAl 5] gi|209533236|gb|ACI53173.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus PAl 5] Length = 131 Score = 74.1 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 44/111 (39%), Gaps = 2/111 (1%) Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDL 62 + Y ++I SS+ R+ + I L A S + AL + R+W + + Sbjct: 7 KAY-QSIAGSSLTGREADAACFRMLIDELKAAEAS-SDHTVRRHALARSQRLWAMIMNAN 64 Query: 63 VSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 V + PQE + +++ R + + +I + VRDGL Sbjct: 65 VQDSGLTPQEDRQLFVTLAHRSQLYGIRAMLDPALPLTPLIRIAENVRDGL 115 >gi|296533830|ref|ZP_06896366.1| conserved hypothetical protein [Roseomonas cervicalis ATCC 49957] gi|296265848|gb|EFH11937.1| conserved hypothetical protein [Roseomonas cervicalis ATCC 49957] Length = 123 Score = 73.7 bits (180), Expect = 8e-12, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 41/98 (41%), Gaps = 6/98 (6%) Query: 16 CRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKL 75 R+ E + + L A ++ ++ EAL R+W + L + +N LP ++ Sbjct: 28 PREEEAAAFRSAATTLLAAREAGHEARG--EALRLNRRLWQAVLIALAAPENALPMPLRQ 85 Query: 76 NLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 L ++ +L+E +R R + + + GL Sbjct: 86 GLATLATTMLREMDRNRP----DLAFLAAINQEIAAGL 119 >gi|239787500|emb|CAX83970.1| conserved uncharacterized protein [uncultured bacterium] Length = 126 Score = 69.8 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 38/96 (39%), Gaps = 1/96 (1%) Query: 18 KREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNL 77 + + L ++ LL A + + + V AL ++WV D +LP E K NL Sbjct: 19 EAKASALVKAALLLDQAKMNRADKQAMVVALDNNLQLWVAIRTIARQPDYNLPDEAKENL 78 Query: 78 ISIGLWVLKECER-IRRNKSNSYQDIIDVISIVRDG 112 + +V + + ++++ + +G Sbjct: 79 AQLSHFVSDLTFKHGLTITDAALDALVNINLRLAEG 114 >gi|46200769|ref|ZP_00056465.2| hypothetical protein Magn03011167 [Magnetospirillum magnetotacticum MS-1] Length = 114 Score = 64.4 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 38/95 (40%), Gaps = 2/95 (2%) Query: 20 EHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLIS 79 E + +++ ++ AL + ++WV + ++ LP VK NL Sbjct: 14 EQDAFGLVEAAITLDQSRGDKAR-LAAALDHNLQLWVAIRTLVTDTNSGLPDAVKTNLTR 72 Query: 80 IGLWVLKEC-ERIRRNKSNSYQDIIDVISIVRDGL 113 + +V ++ N+ +++V + +GL Sbjct: 73 LSDFVADTTLKKGVDISDNTITTLVNVNLQISEGL 107 >gi|218507949|ref|ZP_03505827.1| flagellar biosynthesis regulatory protein FlaF [Rhizobium etli Brasil 5] Length = 98 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 27/60 (45%), Positives = 39/60 (65%), Gaps = 1/60 (1%) Query: 1 MRQ-YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59 M Q Y E +Q+S + ++RE +LDRSI LL++A ++A+E LFYT RVW+ FI Sbjct: 1 MYQFSYAEVMQDSVADAKEREWQVLDRSIELLALARDKDTYGREAIEVLFYTRRVWISFI 60 >gi|83312910|ref|YP_423174.1| hypothetical protein amb3811 [Magnetospirillum magneticum AMB-1] gi|82947751|dbj|BAE52615.1| hypothetical protein [Magnetospirillum magneticum AMB-1] Length = 114 Score = 61.7 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 36/95 (37%), Gaps = 2/95 (2%) Query: 20 EHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLIS 79 E + +++ ++ AL ++WV + + LP VK NL Sbjct: 14 EQDAFGLVEAAITLDQSRGDKAR-LAAALEQNLQLWVAIRTLVSDATSGLPDAVKTNLTR 72 Query: 80 IGLWVLKEC-ERIRRNKSNSYQDIIDVISIVRDGL 113 + +V ++ N+ +++V + +GL Sbjct: 73 LSDFVADTTLKKGVEISDNTITTLVNVNLQISEGL 107 >gi|288962913|ref|YP_003453207.1| hypothetical protein AZL_e03180 [Azospirillum sp. B510] gi|288915179|dbj|BAI76663.1| hypothetical protein AZL_e03180 [Azospirillum sp. B510] Length = 193 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 50/113 (44%), Gaps = 6/113 (5%) Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDL 62 + + +TI ++ +++ +L ++ L + ++ AL ++W+ L Sbjct: 41 ESWADTILRTNFASVEQDSIVLLQAAGSLLDSES----PEKVNVALDQNLKLWIAIKTVL 96 Query: 63 VSEDNHLPQEVKLNLISIGLWVLKECERIRRN--KSNSYQDIIDVISIVRDGL 113 +++D + EVK NL ++ +V+ + +++ + + + +GL Sbjct: 97 LNDDCPVEPEVKANLRNLAQYVVSTTMLATQGAIETSKLVSLARLNMNIAEGL 149 >gi|296535171|ref|ZP_06897393.1| hypothetical protein HMPREF0731_2875 [Roseomonas cervicalis ATCC 49957] gi|296264499|gb|EFH10902.1| hypothetical protein HMPREF0731_2875 [Roseomonas cervicalis ATCC 49957] Length = 134 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 16/105 (15%), Positives = 41/105 (39%), Gaps = 9/105 (8%) Query: 11 ESSIECRKREHWILDRSISLLSIAHKSL--PNSKQAVEALFYTSRVWVVFIQDLVSEDNH 68 +++ R++E + L +A + + +AL R++ ++ E Sbjct: 18 KAARSLREQEAEVYALVSGRLRVAIEGSEIDRVRARADAL----RLFSTVRILVLHESCE 73 Query: 69 LPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 LP ++ ++S+ ++E E+ + + D+ GL Sbjct: 74 LPAPLRGQIVSLCRVAMREVEK---EDAADLGFLADLCDSFAGGL 115 >gi|144901296|emb|CAM78160.1| conserved hypothetical protein [Magnetospirillum gryphiswaldense MSR-1] Length = 110 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 35/99 (35%), Gaps = 6/99 (6%) Query: 18 KREHWIL--DRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKL 75 E R+ +L A + + EAL VWV + S+ +V Sbjct: 9 AIEEQAFQLSRAAIMLDQAKA---DRSKLEEALELNMAVWVALRTLITSDGCSASSQVVE 65 Query: 76 NLISIGLWV-LKECERIRRNKSNSYQDIIDVISIVRDGL 113 NLI + +V K S +I+V + +GL Sbjct: 66 NLIRLANFVAEKTIAGAAAATDASIDALINVNLQISEGL 104 >gi|89069827|ref|ZP_01157162.1| flagellar protein FlaF, putative [Oceanicola granulosus HTCC2516] gi|89044628|gb|EAR50744.1| flagellar protein FlaF, putative [Oceanicola granulosus HTCC2516] Length = 62 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 9/56 (16%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Query: 58 FIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 ++ +N L ++++ L + +V + + + + +I+V + V GL Sbjct: 1 MAAEVADRNNALSEDLRARLFYLSEFVGYQTRKALKGQG-GVASLIEVNTAVMRGL 55 >gi|23005490|ref|ZP_00048277.1| hypothetical protein Magn03001225 [Magnetospirillum magnetotacticum MS-1] Length = 64 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 1/60 (1%) Query: 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSL-PNSKQAVEALFYTSRVWVVFIQ 60 R Y E ++++ R RE DR++ LL A + A+ Y +W + I Sbjct: 3 RMSYSEIMEDAPDLGRAREREAFDRALGLLQSAEARGVTAGHERTAAISYIQDLWNLLIA 62 >gi|74316799|ref|YP_314539.1| hypothetical protein Tbd_0781 [Thiobacillus denitrificans ATCC 25259] gi|74056294|gb|AAZ96734.1| hypothetical protein Tbd_0781 [Thiobacillus denitrificans ATCC 25259] Length = 128 Score = 43.3 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 34/100 (34%), Gaps = 4/100 (4%) Query: 19 REHWILDRSISLLSIAHKSL---PNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKL 75 E LD + L + +Q AL + W L LP EV+ Sbjct: 23 AEVAQLDGIAAQLMRVQRHWHDDDRERQLAAALAASRSTWHAIQAALAEATLPLPLEVRQ 82 Query: 76 NLISIGLWVLKECERI-RRNKSNSYQDIIDVISIVRDGLK 114 NL+ + ++ + +++ +I + + LK Sbjct: 83 NLLILSVYAESKIGACEAAPDADTLGSLIALTRTLAGSLK 122 >gi|7799886|emb|CAB91080.1| Env protein [Human immunodeficiency virus 1] Length = 847 Score = 41.3 bits (96), Expect = 0.048, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 15/88 (17%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y +W + QE+K IS+ + V Sbjct: 766 LLIAARSVDLLGRRGWEALKY---LWNLLQY--------WSQELKNRAISLLDATAIAVA 814 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113 + +RI +++ I+++ +R GL Sbjct: 815 EGTDRIIEIIQRTFRAILNIPRRIRQGL 842 >gi|91176537|gb|ABE26658.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 861 Score = 40.2 bits (93), Expect = 0.093, Method: Composition-based stats. Identities = 17/97 (17%), Positives = 38/97 (39%), Gaps = 21/97 (21%) Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI 80 +L L+ + + EAL Y +W + QE+K + +S+ Sbjct: 777 RDLLLIVTRLVELLGRRG------WEALKY---LWNLLQY--------WSQELKNSAVSL 819 Query: 81 ----GLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 + V + +R+ +++ I+++ +R GL Sbjct: 820 LDAIAIAVAEGTDRVLEGLQRAFRAILNIPRRIRQGL 856 >gi|225348169|gb|ACN87123.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 848 Score = 39.0 bits (90), Expect = 0.21, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 15/88 (17%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A P ++ EAL Y +W + + QE++ + +++ + V Sbjct: 767 LLIAARIVEPLGRRGWEALKY---LWNLLQYWI--------QELRNSAVNLLNTTAIAVA 815 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113 + +RI ++ II + +R GL Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGL 843 >gi|83312762|ref|YP_423026.1| hypothetical protein amb3663 [Magnetospirillum magneticum AMB-1] gi|82947603|dbj|BAE52467.1| hypothetical protein [Magnetospirillum magneticum AMB-1] Length = 173 Score = 38.6 bits (89), Expect = 0.27, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 9/90 (10%) Query: 27 SISLLSIAH--KSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWV 84 +L+ A ++ ++ +AL RVW+V + N + +V Sbjct: 17 IAALMEAADGIEAANDTAAFKDALNANFRVWLVVRE--CGVGNGWAVPTSRD----AEFV 70 Query: 85 LKECERIRRN-KSNSYQDIIDVISIVRDGL 113 + R + II + V GL Sbjct: 71 IHGSSGQGRGVNDDDIGAIIPINRRVAHGL 100 >gi|225348165|gb|ACN87121.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 848 Score = 38.2 bits (88), Expect = 0.33, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 15/88 (17%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A + EAL Y +W + + QE++ + +++ + V Sbjct: 767 LLIAARIVELLGRGGWEALKY---LWNLLQYWI--------QELRNSAVNLLNTTAIAVA 815 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113 + +RI ++ II + +R GL Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGL 843 >gi|256252473|dbj|BAH97593.1| Env [Human immunodeficiency virus 1] gi|256252483|dbj|BAH97602.1| Env [Human immunodeficiency virus 1] Length = 858 Score = 38.2 bits (88), Expect = 0.34, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 15/87 (17%) Query: 31 LSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVLK 86 L A + EAL Y +W + QE+K + IS+ + V + Sbjct: 778 LIAARTVNRGLRGGWEALKY---LWNLTQY--------WSQELKNSAISLLNTIAIVVAE 826 Query: 87 ECERIRRNKSNSYQDIIDVISIVRDGL 113 +R+ I+++ +R GL Sbjct: 827 GTDRVIEALQGVLTAILNIPRRIRQGL 853 >gi|32189807|gb|AAP75718.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 843 Score = 38.2 bits (88), Expect = 0.34, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 15/88 (17%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A + EAL Y +W + QE+K + IS+ + V Sbjct: 762 LLIAARVVELLGRGGWEALKY---LWSLLQY--------WSQELKNSAISLLNTTAIVVA 810 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113 + +R+ + I+++ +R GL Sbjct: 811 EGTDRVLEALQRVGRAILNIPRRIRQGL 838 >gi|222428594|gb|ACM50205.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 850 Score = 38.2 bits (88), Expect = 0.36, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 15/88 (17%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y W + + QE+K + IS+ + V Sbjct: 769 LLIAARGLEHLGRRGWEALKY---CWNLLLY--------WSQELKSSAISLLNTTAIVVA 817 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113 + +RI +++ I + +R GL Sbjct: 818 EGTDRILEGLQTAFRAFIHIPRRIRQGL 845 >gi|295239063|gb|ADF84323.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 864 Score = 37.9 bits (87), Expect = 0.48, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 15/88 (17%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y W + QE+K + +S+ + V Sbjct: 783 LLIAARIVGLLGRRGWEALKY---WWNLLQY--------WSQELKNSAVSLXXXXAIAVA 831 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113 + +R+ +Y+ I ++ +R GL Sbjct: 832 EGTDRVIEGLQRAYRGICNIPRRIRQGL 859 >gi|225348175|gb|ACN87126.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 848 Score = 37.9 bits (87), Expect = 0.49, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 15/88 (17%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y +W + + QE++ + +++ + V Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLLQYWI--------QELRNSAVNLLNTTAIAVA 815 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113 + +RI ++ II + +R GL Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGL 843 >gi|326370908|gb|ADZ56656.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 850 Score = 37.9 bits (87), Expect = 0.50, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 35/88 (39%), Gaps = 15/88 (17%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ E L Y +W + QE+K + +S+ + V Sbjct: 769 LLIAARLVELLGRRGWEXLKY---LWNLLQY--------WSQELKNSAVSLLNTTAVAVA 817 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113 + +R+ +++ +I + +R GL Sbjct: 818 EGTDRVIEAVQRAFRALIHIPRRIRQGL 845 >gi|225348177|gb|ACN87127.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 848 Score = 37.9 bits (87), Expect = 0.50, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 15/88 (17%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y +W + + QE++ + +++ + V Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLLQYWI--------QELRNSAVNLLNTTAIAVA 815 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113 + +RI ++ II + +R GL Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGL 843 >gi|225348185|gb|ACN87131.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 848 Score = 37.9 bits (87), Expect = 0.52, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 15/88 (17%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y +W + + QE++ + +++ + V Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLLQYWI--------QELRNSAVNLLNTTAIAVA 815 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113 + +RI ++ II + +R GL Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGL 843 >gi|225348171|gb|ACN87124.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 843 Score = 37.9 bits (87), Expect = 0.52, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 15/88 (17%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y +W + + QE++ + +++ + V Sbjct: 762 LLIAARIVELLGRRGWEALKY---LWNLLQYWI--------QELRNSAVNLLNTTAIAVA 810 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113 + +RI ++ II + +R GL Sbjct: 811 EGTDRIIELVQRGFRAIIHIPRRIRQGL 838 >gi|225348181|gb|ACN87129.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 848 Score = 37.9 bits (87), Expect = 0.52, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 15/88 (17%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y +W + + QE++ + +++ + V Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLLQYWI--------QELRNSAVNLLNTTAIAVA 815 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113 + +RI ++ II + +R GL Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGL 843 >gi|225348211|gb|ACN87144.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 848 Score = 37.9 bits (87), Expect = 0.53, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 15/88 (17%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y +W + + QE++ + +++ + V Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLLQYWI--------QELRNSAVNLLNTTAIAVA 815 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113 + +RI ++ II + +R GL Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGL 843 >gi|225348167|gb|ACN87122.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 848 Score = 37.9 bits (87), Expect = 0.53, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 15/88 (17%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y +W + + QE++ + +++ + V Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLLQYWI--------QELRNSAVNLLNTTAIAVA 815 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113 + +RI ++ II + +R GL Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGL 843 >gi|225348205|gb|ACN87141.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 848 Score = 37.9 bits (87), Expect = 0.54, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 15/88 (17%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y +W + + QE++ + +++ + V Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLLQYWI--------QELRNSAVNLLNTTAIAVA 815 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113 + +RI ++ II + +R GL Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGL 843 >gi|225348209|gb|ACN87143.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 848 Score = 37.9 bits (87), Expect = 0.54, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 15/88 (17%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y +W + + QE++ + +++ + V Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLLQYWI--------QELRNSAVNLLNTTAIAVA 815 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113 + +RI ++ II + +R GL Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGL 843 >gi|330829383|ref|YP_004392335.1| ABC transporter periplasmic binding protein [Aeromonas veronii B565] gi|328804519|gb|AEB49718.1| ABC transporter, periplasmic binding protein [Aeromonas veronii B565] Length = 339 Score = 37.9 bits (87), Expect = 0.55, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 3/86 (3%) Query: 18 KREHWILDRSISLLSIAHKSLP-NSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLN 76 E + + L A + L + + AL Y VV I D+ P ++K Sbjct: 249 DMEAAAIIKGTPKLEAAKQLLDFAATEQANAL-YNKSFAVVAIPDVAQPRAGYPADIKGQ 307 Query: 77 LI-SIGLWVLKECERIRRNKSNSYQD 101 +I + W +E I S S+ Sbjct: 308 MIDNDFSWAARERNAILAQWSASFDG 333 >gi|225348199|gb|ACN87138.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 848 Score = 37.9 bits (87), Expect = 0.55, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 15/88 (17%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y +W + + QE++ + +++ + V Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLLQYWI--------QELRNSAVNLLNTTAIAVA 815 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113 + +RI ++ II + +R GL Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGL 843 >gi|225348193|gb|ACN87135.1| envelope glycoprotein [Human immunodeficiency virus 1] gi|225348195|gb|ACN87136.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 848 Score = 37.9 bits (87), Expect = 0.55, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 15/88 (17%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y +W + + QE++ + +++ + V Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLLQYWI--------QELRNSAVNLLNTTAIAVA 815 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113 + +RI ++ II + +R GL Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGL 843 >gi|225348207|gb|ACN87142.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 848 Score = 37.5 bits (86), Expect = 0.61, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 15/88 (17%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y +W + + QE++ + +++ + V Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLLQYWI--------QELRNSAVNLLNTTAIAVA 815 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113 + +RI ++ II + +R GL Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGL 843 >gi|225348203|gb|ACN87140.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 848 Score = 37.5 bits (86), Expect = 0.61, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 15/88 (17%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y +W + + QE++ + +++ + V Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLLQYWI--------QELRNSAVNLLNTTAIAVA 815 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113 + +RI ++ II + +R GL Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGL 843 >gi|225348197|gb|ACN87137.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 848 Score = 37.5 bits (86), Expect = 0.61, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 15/88 (17%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y +W + + QE++ + +++ + V Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLLQYWI--------QELRNSAVNLLNTTAIAVA 815 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113 + +RI ++ II + +R GL Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGL 843 >gi|225348189|gb|ACN87133.1| envelope glycoprotein [Human immunodeficiency virus 1] gi|225348191|gb|ACN87134.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 848 Score = 37.5 bits (86), Expect = 0.61, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 15/88 (17%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y +W + + QE++ + +++ + V Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLLQYWI--------QELRNSAVNLLNTTAIAVA 815 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113 + +RI ++ II + +R GL Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGL 843 >gi|225348183|gb|ACN87130.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 848 Score = 37.5 bits (86), Expect = 0.61, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 15/88 (17%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y +W + + QE++ + +++ + V Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLLQYWI--------QELRNSAVNLLNTTAIAVA 815 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113 + +RI ++ II + +R GL Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGL 843 >gi|225348179|gb|ACN87128.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 843 Score = 37.5 bits (86), Expect = 0.61, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 15/88 (17%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y +W + + QE++ + +++ + V Sbjct: 762 LLIAARIVELLGRRGWEALKY---LWNLLQYWI--------QELRNSAVNLLNTTAIAVA 810 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113 + +RI ++ II + +R GL Sbjct: 811 EGTDRIIELVQRGFRAIIHIPRRIRQGL 838 >gi|225348173|gb|ACN87125.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 848 Score = 37.5 bits (86), Expect = 0.61, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 15/88 (17%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y +W + + QE++ + +++ + V Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLLQYWI--------QELRNSAVNLLNTTAIAVA 815 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113 + +RI ++ II + +R GL Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGL 843 >gi|225348201|gb|ACN87139.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 848 Score = 37.5 bits (86), Expect = 0.61, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 15/88 (17%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y +W + + QE++ + +++ + V Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLLQYWI--------QELRNSAVNLLNTTAIAVA 815 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113 + +RI ++ II + +R GL Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGL 843 >gi|317408014|gb|ADV17540.1| envelope glycoprotein [Human immunodeficiency virus 1] gi|317408030|gb|ADV17548.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 847 Score = 37.5 bits (86), Expect = 0.62, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 15/88 (17%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y +W + QE+K + IS+ + V Sbjct: 766 LLIAARIVELLGRRGWEALKY---LWNLLQY--------WSQELKNSAISLLNTTAIAVG 814 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113 + +RI + + I+++ +R GL Sbjct: 815 EGTDRIIEALQRAGRAILNIPRRIRQGL 842 >gi|317408010|gb|ADV17538.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 849 Score = 37.5 bits (86), Expect = 0.65, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 15/88 (17%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y +W + QE+K + IS+ + V Sbjct: 768 LLIAARIVELLGRRGWEALKY---LWNLLQY--------WSQELKNSAISLLNTTAIVVG 816 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113 + +R+ + + I+++ +R GL Sbjct: 817 EGTDRVIEALQRAGRAILNIPRRIRQGL 844 >gi|317407992|gb|ADV17529.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 849 Score = 37.5 bits (86), Expect = 0.65, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 15/88 (17%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y +W + QE+K + IS+ + V Sbjct: 768 LLIAARIVELLGRRGWEALKY---LWNLLQY--------WSQELKNSAISLLNTTAIVVG 816 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113 + +R+ + + I+++ +R GL Sbjct: 817 EGTDRVIEALQRAGRAILNIPRRIRQGL 844 >gi|317407986|gb|ADV17526.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 849 Score = 37.5 bits (86), Expect = 0.65, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 15/88 (17%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y +W + QE+K + IS+ + V Sbjct: 768 LLIAARIVELLGRRGWEALKY---LWNLLQY--------WSQELKNSAISLLNTTAIVVG 816 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113 + +R+ + + I+++ +R GL Sbjct: 817 EGTDRVIEALQRAGRAILNIPRRIRQGL 844 >gi|317408024|gb|ADV17545.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 853 Score = 37.5 bits (86), Expect = 0.71, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 15/88 (17%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y +W + QE+K + IS+ + V Sbjct: 772 LLIAARIVELLGRRGWEALKY---LWNLLQY--------WSQELKNSAISLLNTTAIVVG 820 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113 + +RI + + I+++ +R GL Sbjct: 821 EGTDRIIEALQRTGRAILNIPRRIRQGL 848 >gi|317408028|gb|ADV17547.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 849 Score = 37.5 bits (86), Expect = 0.73, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 15/88 (17%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y +W + QE+K + IS+ + V Sbjct: 768 LLIAARIVELLGRRGWEALKY---LWNLLQY--------WSQELKNSAISLLNTTAIVVG 816 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113 + +RI + + I+++ +R GL Sbjct: 817 EGTDRIIEALQRAGRAILNIPRRIRQGL 844 >gi|317408022|gb|ADV17544.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 849 Score = 37.5 bits (86), Expect = 0.73, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 15/88 (17%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y +W + QE+K + IS+ + V Sbjct: 768 LLIAARIVELLGRRGWEALKY---LWNLLQY--------WSQELKNSAISLLNTTAIVVG 816 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113 + +RI + + I+++ +R GL Sbjct: 817 EGTDRIIEALQRAGRAILNIPRRIRQGL 844 >gi|317408020|gb|ADV17543.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 853 Score = 37.5 bits (86), Expect = 0.73, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 15/88 (17%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y +W + QE+K + IS+ + V Sbjct: 772 LLIAARIVELLGRRGWEALKY---LWNLLQY--------WSQELKNSAISLLNTTAIVVG 820 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113 + +RI + + I+++ +R GL Sbjct: 821 EGTDRIIEALQRAGRAILNIPRRIRQGL 848 >gi|317408018|gb|ADV17542.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 847 Score = 37.5 bits (86), Expect = 0.73, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 15/88 (17%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y +W + QE+K + IS+ + V Sbjct: 766 LLIAARIVELLGRRGWEALKY---LWNLLQY--------WSQELKNSAISLLNTTAIVVG 814 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113 + +RI + + I+++ +R GL Sbjct: 815 EGTDRIIEALQRAGRAILNIPRRIRQGL 842 >gi|317408012|gb|ADV17539.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 853 Score = 37.5 bits (86), Expect = 0.73, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 15/88 (17%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y +W + QE+K + IS+ + V Sbjct: 772 LLIAARIVELLGRRGWEALKY---LWNLLQY--------WSQELKNSAISLLNTTAIVVG 820 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113 + +RI + + I+++ +R GL Sbjct: 821 EGTDRIIEALQRAGRAILNIPRRIRQGL 848 >gi|317408006|gb|ADV17536.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 849 Score = 37.5 bits (86), Expect = 0.73, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 15/88 (17%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y +W + QE+K + IS+ + V Sbjct: 768 LLIAARIVELLGRRGWEALKY---LWNLLQY--------WSQELKNSAISLLNTTAIVVG 816 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113 + +RI + + I+++ +R GL Sbjct: 817 EGTDRIIEALQRAGRAILNIPRRIRQGL 844 >gi|317408000|gb|ADV17533.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 849 Score = 37.5 bits (86), Expect = 0.73, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 15/88 (17%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y +W + QE+K + IS+ + V Sbjct: 768 LLIAARIVELLGRRGWEALKY---LWNLLQY--------WSQELKNSAISLLNTTAIVVG 816 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113 + +RI + + I+++ +R GL Sbjct: 817 EGTDRIIEALQRAGRAILNIPRRIRQGL 844 >gi|317407998|gb|ADV17532.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 849 Score = 37.5 bits (86), Expect = 0.73, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 15/88 (17%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y +W + QE+K + IS+ + V Sbjct: 768 LLIAARIVELLGRRGWEALKY---LWNLLQY--------WSQELKNSAISLLNTTAIVVG 816 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113 + +RI + + I+++ +R GL Sbjct: 817 EGTDRIIEALQRAGRAILNIPRRIRQGL 844 >gi|317407996|gb|ADV17531.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 848 Score = 37.5 bits (86), Expect = 0.73, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 15/88 (17%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y +W + QE+K + IS+ + V Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLLQY--------WSQELKNSAISLLNTTAIVVG 815 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113 + +RI + + I+++ +R GL Sbjct: 816 EGTDRIIEALQRAGRAILNIPRRIRQGL 843 >gi|317407994|gb|ADV17530.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 849 Score = 37.5 bits (86), Expect = 0.73, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 15/88 (17%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y +W + QE+K + IS+ + V Sbjct: 768 LLIAARIVELLGRRGWEALKY---LWNLLQY--------WSQELKNSAISLLNTTAIVVG 816 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113 + +RI + + I+++ +R GL Sbjct: 817 EGTDRIIEALQRAGRAILNIPRRIRQGL 844 >gi|317408032|gb|ADV17549.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 849 Score = 37.1 bits (85), Expect = 0.77, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 15/88 (17%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y +W + QE+K + IS+ + V Sbjct: 768 LLIAARIVELLGRRGWEALKY---LWNLLQY--------WSQELKNSAISLLNTTAIVVG 816 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113 + +RI + + I+++ +R GL Sbjct: 817 EGTDRIIEALQRAGRAILNIPRRIRQGL 844 >gi|222428535|gb|ACM50158.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 874 Score = 37.1 bits (85), Expect = 0.81, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 15/88 (17%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y W + QE+K + +S+ + V Sbjct: 793 LLIAARIVELLGRRGWEALKY---WWSLLQY--------WSQELKNSAVSLLNATAIAVA 841 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113 + +RI +++ II + + +R GL Sbjct: 842 EGTDRIIEVAQRAFRAIIHIPTRIRQGL 869 >gi|239948270|ref|ZP_04700023.1| tetratricopeptide repeat-containing protein [Rickettsia endosymbiont of Ixodes scapularis] gi|239922546|gb|EER22570.1| tetratricopeptide repeat-containing protein [Rickettsia endosymbiont of Ixodes scapularis] Length = 689 Score = 37.1 bits (85), Expect = 0.82, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 40/91 (43%), Gaps = 6/91 (6%) Query: 3 QYYHETIQ--ESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQ 60 + Y++ +Q + +K +H + R + +S A L N+K EAL Y + +FI Sbjct: 515 EAYNQVMQLYDMHKPVKKEDHEVFGRIFTQMSRAQLGLGNAK---EALDYARKARTIFIN 571 Query: 61 DLVSEDNHLPQEVKLNLISIGLWVLKECERI 91 D +N V ++ + + E + + Sbjct: 572 DPSRPNNSRDIAVSPDI-YLAKACVAEADAL 601 >gi|317407990|gb|ADV17528.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 849 Score = 37.1 bits (85), Expect = 0.83, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 15/88 (17%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y +W + QE+K + IS+ + V Sbjct: 768 LLIAARIVELLGRRGWEALKY---LWNLLQY--------WSQELKNSAISLLNTTAIVVG 816 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113 + +RI + + I+++ +R GL Sbjct: 817 EGTDRIIEALQRAGRAILNIPRRIRQGL 844 >gi|307728681|ref|YP_003905905.1| glycoside hydrolase 15-related protein [Burkholderia sp. CCGE1003] gi|307583216|gb|ADN56614.1| glycoside hydrolase 15-related protein [Burkholderia sp. CCGE1003] Length = 591 Score = 37.1 bits (85), Expect = 0.83, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 25/68 (36%) Query: 32 SIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERI 91 AH + P AL T R W +I PQ V+ +L+++ + + I Sbjct: 180 KRAHHAAPQPLDVQHALDETQRFWRNWIDSFDDSRTAWPQAVRRSLLTLKALMHRRTGAI 239 Query: 92 RRNKSNSY 99 + S Sbjct: 240 VAAPTTSL 247 >gi|109828537|sp|Q9QBY2|ENV_HV196 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor Length = 842 Score = 36.7 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 17/97 (17%), Positives = 35/97 (36%), Gaps = 21/97 (21%) Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI 80 ++ +L + EAL Y +W + QE+K + IS+ Sbjct: 758 RNLILIVTRILER------GLRGGWEALKY---LWNLVQY--------WSQELKNSAISL 800 Query: 81 ----GLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 + V +RI +++ ++ + +R GL Sbjct: 801 LNTTAIAVAGGTDRIIEIGQRAFRALLHIPRRIRQGL 837 >gi|6093159|emb|CAB58990.1| ENV protein [Human immunodeficiency virus 1] Length = 850 Score = 36.7 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 17/97 (17%), Positives = 35/97 (36%), Gaps = 21/97 (21%) Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI 80 ++ +L + EAL Y +W + QE+K + IS+ Sbjct: 766 RNLILIVTRILER------GLRGGWEALKY---LWNLVQY--------WSQELKNSAISL 808 Query: 81 ----GLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 + V +RI +++ ++ + +R GL Sbjct: 809 LNTTAIAVAGGTDRIIEIGQRAFRALLHIPRRIRQGL 845 >gi|282761919|gb|ADA84560.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 864 Score = 36.3 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 15/87 (17%) Query: 31 LSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVLK 86 L +A + EAL Y +W + QE+K + IS+ + V + Sbjct: 784 LIVARIVNRGLRGGWEALKY---LWNIIQY--------WSQELKNSAISLFNATAIAVAE 832 Query: 87 ECERIRRNKSNSYQDIIDVISIVRDGL 113 +RI + + I+++ +R GL Sbjct: 833 GTDRIIEALQKAGRAILNIPRRIRQGL 859 >gi|269961613|ref|ZP_06175975.1| flagellar protein FliS [Vibrio harveyi 1DA3] gi|269833654|gb|EEZ87751.1| flagellar protein FliS [Vibrio harveyi 1DA3] Length = 136 Score = 36.3 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 40/113 (35%), Gaps = 9/113 (7%) Query: 3 QYYHETI---QESSIECRKREHWILDRSISLLSI--AHKSLPNSKQAVEALFYTSRVWVV 57 Q Y + Q S+ K ++ +I L A N E L + + Sbjct: 6 QAYKKVSVDSQLSAASPHKVIQMLMAGAIERLIQGKAAMQAGNIPAKGERLGKALDIIIA 65 Query: 58 FIQDLVSEDNHLPQEVKLNLISIGLWVLKECERI-RRNKSNSYQDIIDVISIV 109 L +D ++ NL S+ +++ + +N D+ID+I + Sbjct: 66 LRSCLSMDDGG---DIASNLDSLYEFMITQISAANHQNDPQPIDDVIDIIREI 115 >gi|156602277|gb|ABU87036.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 863 Score = 36.3 bits (83), Expect = 1.4, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 36/86 (41%), Gaps = 15/86 (17%) Query: 31 LSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVLK 86 L A ++ EAL Y +W + + + QE+K + IS+ + V + Sbjct: 783 LIAARTVGLLGRRGWEALKY---LWNLLLYWI--------QELKNSAISLLNTTAIAVAE 831 Query: 87 ECERIRRNKSNSYQDIIDVISIVRDG 112 +R+ + + ++++ +R G Sbjct: 832 ATDRVMDIVQRTIRAVLNIPRRIRQG 857 >gi|222428545|gb|ACM50166.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 867 Score = 36.3 bits (83), Expect = 1.4, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 15/87 (17%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL + ++ EAL Y +W + + QE+K + IS+ + V Sbjct: 786 LLIVTRTVELLGRRGWEALKY---LWNLLQYWI--------QELKNSAISLLNATAIAVA 834 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDG 112 + +RI +++ II + +R G Sbjct: 835 EGTDRILEGLQRAFRAIIHIPRRIRQG 861 >gi|116518678|gb|ABJ99563.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 867 Score = 36.3 bits (83), Expect = 1.4, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 15/87 (17%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL + ++ EAL Y +W + + QE+K + IS+ + V Sbjct: 786 LLIVTRTVELLGRRGWEALKY---LWNLLQYWI--------QELKNSAISLLNATAIAVA 834 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDG 112 + +RI +++ II + +R G Sbjct: 835 EGTDRILEGLQRAFRAIIHIPRRIRQG 861 >gi|296201235|ref|XP_002806838.1| PREDICTED: LOW QUALITY PROTEIN: dynein heavy chain 9, axonemal-like [Callithrix jacchus] Length = 4478 Score = 36.3 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 20/63 (31%), Gaps = 2/63 (3%) Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSE--DNHLPQEVKLNLI 78 L R+ + L+ A + L K + L + ++ EV I Sbjct: 3278 RQALSRATADLTAAQEKLAAIKAKIAHLNENLAKLTAKFEKATADKLKCQQEAEVTAGTI 3337 Query: 79 SIG 81 S+ Sbjct: 3338 SLA 3340 >gi|59710072|gb|AAW88565.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 837 Score = 36.3 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 15/88 (17%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL +A ++ EAL Y +W + + QE+K + IS+ + V Sbjct: 756 LLIVARTLELLGRRGWEALKY---LWSLLQYWI--------QELKNSAISLLNATAIAVA 804 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113 + +R+ +Y+ I+++ + +R GL Sbjct: 805 EGTDRVIEIVQRAYRAILNIPTRIRQGL 832 >gi|73955910|ref|XP_863527.1| PREDICTED: similar to dynein, axonemal, heavy polypeptide 9 isoform 2 isoform 2 [Canis familiaris] Length = 4359 Score = 35.9 bits (82), Expect = 1.8, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 20/63 (31%), Gaps = 2/63 (3%) Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSE--DNHLPQEVKLNLI 78 L R+ S L+ A + L K + L + ++ EV I Sbjct: 3159 RQALSRATSDLTAAQEKLAAVKAKIAHLNENLAKLTAKFEKATADKLKCQQEAEVTAGTI 3218 Query: 79 SIG 81 S+ Sbjct: 3219 SLA 3221 >gi|298199679|gb|ADI59774.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 856 Score = 35.9 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 37/87 (42%), Gaps = 15/87 (17%) Query: 31 LSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVLK 86 L A ++ EA+ Y +W + + QE+K +++S+ + V + Sbjct: 776 LIAARIVELLGRRGWEAIKY---LWNILQYWI--------QELKNSVVSLFNATAIXVAE 824 Query: 87 ECERIRRNKSNSYQDIIDVISIVRDGL 113 +RI +++ I ++ +R GL Sbjct: 825 GTDRIIEAIQAAFRAIXNIPRRIRQGL 851 >gi|323975220|gb|EGB70324.1| hypothetical protein ERFG_03922 [Escherichia coli TW10509] Length = 249 Score = 35.9 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 9/73 (12%) Query: 31 LSIAHKSLPNSKQAVEALFY-TSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECE 89 L A + + F +W+ D P E + LI++ VLK Sbjct: 105 LQRATRGFHSPHALDNHTFSSNESLWISKQND--------PNEARAQLITLRRSVLKLTG 156 Query: 90 RIRRNKSNSYQDI 102 + + Q + Sbjct: 157 DVLNDDPRDLQLL 169 >gi|73955908|ref|XP_851319.1| PREDICTED: similar to dynein, axonemal, heavy polypeptide 9 isoform 2 isoform 1 [Canis familiaris] Length = 4489 Score = 35.9 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 20/63 (31%), Gaps = 2/63 (3%) Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSE--DNHLPQEVKLNLI 78 L R+ S L+ A + L K + L + ++ EV I Sbjct: 3289 RQALSRATSDLTAAQEKLAAVKAKIAHLNENLAKLTAKFEKATADKLKCQQEAEVTAGTI 3348 Query: 79 SIG 81 S+ Sbjct: 3349 SLA 3351 >gi|312884917|ref|ZP_07744607.1| flagellar protein FliS [Vibrio caribbenthicus ATCC BAA-2122] gi|309367394|gb|EFP94956.1| flagellar protein FliS [Vibrio caribbenthicus ATCC BAA-2122] Length = 136 Score = 35.9 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 39/117 (33%), Gaps = 17/117 (14%) Query: 3 QYYHETI---QESSIECRKREHWILDRSISLLSIAHKS------LPNSKQAVEALFYTSR 53 Q Y + Q S+ K ++ +I L + ++ +AL Sbjct: 6 QAYKKVSVDSQLSAASPHKIVQMLMAGAIERLIQGKAAMEAGNIPKKGERLGKALDIVIS 65 Query: 54 VWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKE-CERIRRNKSNSYQDIIDVISIV 109 + D + + NL + +++ + E +N D+I++I + Sbjct: 66 LRSCLSMDDGGD-------IAQNLDQLYEFMITQITEANHKNDPQPIDDVIEIIREI 115 >gi|301787127|ref|XP_002928979.1| PREDICTED: dynein heavy chain 9, axonemal-like, partial [Ailuropoda melanoleuca] Length = 3310 Score = 35.9 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 4/68 (5%) Query: 18 KRE--HWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSE--DNHLPQEV 73 + E L R+ S L+ A + L K + L + ++ EV Sbjct: 2162 EVEPKRQALSRATSDLTAAQEKLAAIKAKIAHLNENLAKLTAKFEKATADKLKCQQEAEV 2221 Query: 74 KLNLISIG 81 IS+ Sbjct: 2222 TAGTISLA 2229 >gi|28899028|ref|NP_798633.1| flagellar protein FliS [Vibrio parahaemolyticus RIMD 2210633] gi|153834159|ref|ZP_01986826.1| flagellar protein FliS [Vibrio harveyi HY01] gi|153836938|ref|ZP_01989605.1| flagellar protein FliS [Vibrio parahaemolyticus AQ3810] gi|260365226|ref|ZP_05777783.1| flagellar protein FliS [Vibrio parahaemolyticus K5030] gi|260878776|ref|ZP_05891131.1| flagellar protein FliS [Vibrio parahaemolyticus AN-5034] gi|260897371|ref|ZP_05905867.1| flagellar protein FliS [Vibrio parahaemolyticus Peru-466] gi|260899930|ref|ZP_05908325.1| flagellar protein FliS [Vibrio parahaemolyticus AQ4037] gi|1254205|gb|AAC27805.1| essential polar flagellar protein [Vibrio parahaemolyticus] gi|28807247|dbj|BAC60517.1| polar flagellar protein FlaJ [Vibrio parahaemolyticus RIMD 2210633] gi|148869529|gb|EDL68527.1| flagellar protein FliS [Vibrio harveyi HY01] gi|149749711|gb|EDM60456.1| flagellar protein FliS [Vibrio parahaemolyticus AQ3810] gi|308088254|gb|EFO37949.1| flagellar protein FliS [Vibrio parahaemolyticus Peru-466] gi|308094208|gb|EFO43903.1| flagellar protein FliS [Vibrio parahaemolyticus AN-5034] gi|308107349|gb|EFO44889.1| flagellar protein FliS [Vibrio parahaemolyticus AQ4037] gi|308115435|gb|EFO52975.1| flagellar protein FliS [Vibrio parahaemolyticus K5030] gi|328474435|gb|EGF45240.1| flagellar protein FliS [Vibrio parahaemolyticus 10329] Length = 136 Score = 35.9 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 9/113 (7%) Query: 3 QYYHETI---QESSIECRKREHWILDRSISLLSI--AHKSLPNSKQAVEALFYTSRVWVV 57 Q Y + Q S+ K ++ +I L A N E L + + Sbjct: 6 QAYKKVSVDSQLSAASPHKVIQMLMAGAIERLIQGKAAMQAGNIPAKGERLGKALDIIIA 65 Query: 58 FIQDLVSEDNHLPQEVKLNLISIGLWVLKECERI-RRNKSNSYQDIIDVISIV 109 L ED ++ NL S+ +++ + +N D+ID+I + Sbjct: 66 LRSCLSMEDGG---DIASNLDSLYEFMITQISAANHQNDPQPIDDVIDIIREI 115 >gi|323965780|gb|EGB61231.1| hypothetical protein ERJG_02852 [Escherichia coli M863] gi|327250864|gb|EGE62566.1| hypothetical protein ECSTEC7V_4407 [Escherichia coli STEC_7v] Length = 249 Score = 35.9 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 9/73 (12%) Query: 31 LSIAHKSLPNSKQAVEALFY-TSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECE 89 L A + + F +W+ D P E + LI++ VLK Sbjct: 105 LQRATRGFHSPHALDNHTFSSNESLWISKQND--------PNEARAQLITLRRSVLKLTG 156 Query: 90 RIRRNKSNSYQDI 102 + + Q + Sbjct: 157 DVLNDDPRDLQLL 169 >gi|163801840|ref|ZP_02195737.1| flagellar protein FliS [Vibrio sp. AND4] gi|159174348|gb|EDP59152.1| flagellar protein FliS [Vibrio sp. AND4] Length = 136 Score = 35.9 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 40/113 (35%), Gaps = 9/113 (7%) Query: 3 QYYHETI---QESSIECRKREHWILDRSISLLSI--AHKSLPNSKQAVEALFYTSRVWVV 57 Q Y + Q S+ K ++ +I L A N E L + + Sbjct: 6 QAYKKVSVDSQLSAASPHKVIQMLMAGAIERLIQGKAAMQAGNIPAKGERLGKALDIIIA 65 Query: 58 FIQDLVSEDNHLPQEVKLNLISIGLWVLKECERI-RRNKSNSYQDIIDVISIV 109 L +D ++ NL S+ +++ + +N D+ID+I + Sbjct: 66 LRSCLSMDDGG---DIASNLDSLYEFMITQISTANHQNDPKPIDDVIDIIREI 115 >gi|332227394|ref|XP_003262879.1| PREDICTED: dynein heavy chain 9, axonemal-like [Nomascus leucogenys] Length = 250 Score = 35.9 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 20/63 (31%), Gaps = 2/63 (3%) Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSE--DNHLPQEVKLNLI 78 L R+ + L+ A + L K + L + ++ EV I Sbjct: 94 RQALSRATADLTAAQEKLAAIKAKIAHLNENLAKLTARFEKATADKLKCQQEAEVTAGTI 153 Query: 79 SIG 81 S+ Sbjct: 154 SLA 156 >gi|119442|sp|P18799|ENV_HV1ND RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor gi|328162|gb|AAA44873.1| env polyprotein [Human immunodeficiency virus 1] Length = 846 Score = 35.6 bits (81), Expect = 2.4, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 15/87 (17%) Query: 31 LSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLN----LISIGLWVLK 86 L A ++ EAL Y +W + QE++ + L +I + V + Sbjct: 766 LIAARIVELLGRRGWEALKY---LWNLLQY--------WSQELRNSASSLLDTIAIAVAE 814 Query: 87 ECERIRRNKSNSYQDIIDVISIVRDGL 113 +R+ + + I++V +R GL Sbjct: 815 RTDRVIEVVQRACRAILNVPRRIRQGL 841 >gi|297271948|ref|XP_001118299.2| PREDICTED: dynein heavy chain 9, axonemal-like, partial [Macaca mulatta] Length = 2536 Score = 35.6 bits (81), Expect = 2.4, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 2/63 (3%) Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSE--DNHLPQEVKLNLI 78 L ++ + L+ A + L K + L + ++ EV + I Sbjct: 1336 RQALSKATADLTAAQEKLAAIKAKIAHLNENLAKLTARFEKATADKLKCQQEAEVTASTI 1395 Query: 79 SIG 81 S+ Sbjct: 1396 SLA 1398 >gi|311268434|ref|XP_003132053.1| PREDICTED: dynein heavy chain 9, axonemal-like [Sus scrofa] Length = 385 Score = 35.6 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 20/63 (31%), Gaps = 2/63 (3%) Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSE--DNHLPQEVKLNLI 78 L ++ S L+ A + L K + L + ++ EV I Sbjct: 219 RQALSKATSDLTAAQEKLAAVKAKIAHLNENLAKLTAKFEKATADKLKCQQEAEVTAGTI 278 Query: 79 SIG 81 S+ Sbjct: 279 SLA 281 >gi|312948279|gb|ADR29106.1| putative phosphopantetheinyl transferase [Escherichia coli O83:H1 str. NRG 857C] Length = 249 Score = 35.2 bits (80), Expect = 3.0, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 9/73 (12%) Query: 31 LSIAHKSLPNSKQAVEALFY-TSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECE 89 L A + + F +W+ D P E + LI++ VLK + Sbjct: 105 LQRATRGFHSPHAPDNHTFSSNESLWISKQND--------PNEARAQLITLRRSVLKLTD 156 Query: 90 RIRRNKSNSYQDI 102 + + Q + Sbjct: 157 DVLNDDPRDLQLL 169 >gi|258623959|ref|ZP_05718912.1| hypothetical protein VMB_02130 [Vibrio mimicus VM603] gi|258583753|gb|EEW08549.1| hypothetical protein VMB_02130 [Vibrio mimicus VM603] Length = 442 Score = 35.2 bits (80), Expect = 3.1, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 8/79 (10%) Query: 29 SLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNL----ISIGLWV 84 LL IA P+ + ++AL +T R W I+ V E++ L + L S+ W Sbjct: 31 GLLIIASS--PDQDELLQALHHTRRYWSWLIK--VEEESALSGLLSDGLWEAETSLSEWH 86 Query: 85 LKECERIRRNKSNSYQDII 103 + + N ++ Sbjct: 87 ELQRRLALFHDPNDCDPLL 105 >gi|222035426|emb|CAP78171.1| Uncharacterized protein yieE [Escherichia coli LF82] Length = 253 Score = 35.2 bits (80), Expect = 3.4, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 9/73 (12%) Query: 31 LSIAHKSLPNSKQAVEALFY-TSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECE 89 L A + + F +W+ D P E + LI++ VLK + Sbjct: 109 LQRATRGFHSPHAPDNHTFSSNESLWISKQND--------PNEARAQLITLRRSVLKLTD 160 Query: 90 RIRRNKSNSYQDI 102 + + Q + Sbjct: 161 DVLNDDPRDLQLL 173 >gi|26251225|ref|NP_757265.1| hypothetical protein c5419 [Escherichia coli CFT073] gi|26111658|gb|AAN83839.1|AE016772_17 Hypothetical protein yjiN [Escherichia coli CFT073] Length = 438 Score = 35.2 bits (80), Expect = 3.4, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%) Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69 DR+ L K+ P +A+ + +W + L ++ N Sbjct: 270 RHAFDRATLALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 329 Query: 70 PQEVKLNLISIGLW 83 VK + G W Sbjct: 330 DSRVKERIARAGQW 343 >gi|170279728|gb|ACB11844.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 345 Score = 35.2 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 15/88 (17%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y +W + QE++ + IS+ + V Sbjct: 264 LLIAARIVELLGRRGWEALKY---LWNLLQY--------WSQELRNSAISLLNTTAIAVA 312 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113 + +RI ++ I ++ +R GL Sbjct: 313 EGTDRIIEVLQRIFRAICNIPRRIRQGL 340 >gi|15804914|ref|NP_290955.1| hypothetical protein Z5938 [Escherichia coli O157:H7 EDL933] gi|15834553|ref|NP_313326.1| hypothetical protein ECs5299 [Escherichia coli O157:H7 str. Sakai] gi|168749498|ref|ZP_02774520.1| putative membrane protein [Escherichia coli O157:H7 str. EC4113] gi|168754911|ref|ZP_02779918.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401] gi|168760588|ref|ZP_02785595.1| putative membrane protein [Escherichia coli O157:H7 str. EC4501] gi|168766621|ref|ZP_02791628.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486] gi|168773948|ref|ZP_02798955.1| putative membrane protein [Escherichia coli O157:H7 str. EC4196] gi|168781630|ref|ZP_02806637.1| putative membrane protein [Escherichia coli O157:H7 str. EC4076] gi|168784984|ref|ZP_02809991.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869] gi|168797913|ref|ZP_02822920.1| putative membrane protein [Escherichia coli O157:H7 str. EC508] gi|195937351|ref|ZP_03082733.1| hypothetical protein EscherichcoliO157_13015 [Escherichia coli O157:H7 str. EC4024] gi|208805722|ref|ZP_03248059.1| putative membrane protein [Escherichia coli O157:H7 str. EC4206] gi|208813284|ref|ZP_03254613.1| putative membrane protein [Escherichia coli O157:H7 str. EC4045] gi|208819235|ref|ZP_03259555.1| putative membrane protein [Escherichia coli O157:H7 str. EC4042] gi|209400166|ref|YP_002273864.1| hypothetical protein ECH74115_5850 [Escherichia coli O157:H7 str. EC4115] gi|217324994|ref|ZP_03441078.1| putative membrane protein [Escherichia coli O157:H7 str. TW14588] gi|254796340|ref|YP_003081177.1| inner membrane protein [Escherichia coli O157:H7 str. TW14359] gi|261226698|ref|ZP_05940979.1| conserved inner membrane protein [Escherichia coli O157:H7 str. FRIK2000] gi|261256914|ref|ZP_05949447.1| conserved inner membrane protein [Escherichia coli O157:H7 str. FRIK966] gi|12519355|gb|AAG59521.1|AE005665_3 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] gi|13364777|dbj|BAB38722.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|187770337|gb|EDU34181.1| putative membrane protein [Escherichia coli O157:H7 str. EC4196] gi|188016146|gb|EDU54268.1| putative membrane protein [Escherichia coli O157:H7 str. EC4113] gi|189000699|gb|EDU69685.1| putative membrane protein [Escherichia coli O157:H7 str. EC4076] gi|189357792|gb|EDU76211.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401] gi|189364033|gb|EDU82452.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486] gi|189368870|gb|EDU87286.1| putative membrane protein [Escherichia coli O157:H7 str. EC4501] gi|189374844|gb|EDU93260.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869] gi|189379436|gb|EDU97852.1| putative membrane protein [Escherichia coli O157:H7 str. EC508] gi|208725523|gb|EDZ75124.1| putative membrane protein [Escherichia coli O157:H7 str. EC4206] gi|208734561|gb|EDZ83248.1| putative membrane protein [Escherichia coli O157:H7 str. EC4045] gi|208739358|gb|EDZ87040.1| putative membrane protein [Escherichia coli O157:H7 str. EC4042] gi|209161566|gb|ACI38999.1| putative membrane protein [Escherichia coli O157:H7 str. EC4115] gi|209747336|gb|ACI71975.1| hypothetical protein ECs5299 [Escherichia coli] gi|209747338|gb|ACI71976.1| hypothetical protein ECs5299 [Escherichia coli] gi|209747340|gb|ACI71977.1| hypothetical protein ECs5299 [Escherichia coli] gi|217321215|gb|EEC29639.1| putative membrane protein [Escherichia coli O157:H7 str. TW14588] gi|254595740|gb|ACT75101.1| conserved inner membrane protein [Escherichia coli O157:H7 str. TW14359] gi|320190544|gb|EFW65194.1| Putative inner membrane protein [Escherichia coli O157:H7 str. EC1212] gi|326345346|gb|EGD69089.1| Putative inner membrane protein [Escherichia coli O157:H7 str. 1125] gi|326346799|gb|EGD70533.1| Putative inner membrane protein [Escherichia coli O157:H7 str. 1044] Length = 423 Score = 35.2 bits (80), Expect = 3.6, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 8/71 (11%) Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTSRVWVVFIQDLVSEDNHLPQE 72 DR+ L K+ P +A+ + S +W + L ++ N Sbjct: 258 RHAFDRATFALIDKLKNDPEMTARADAVKSYLKEDEAFLSELWGDLREWLKADINSEDSR 317 Query: 73 VKLNLISIGLW 83 VK + G W Sbjct: 318 VKERIARAGQW 328 >gi|254506859|ref|ZP_05118998.1| flagellar protein FliS [Vibrio parahaemolyticus 16] gi|219550144|gb|EED27130.1| flagellar protein FliS [Vibrio parahaemolyticus 16] Length = 136 Score = 34.8 bits (79), Expect = 3.7, Method: Composition-based stats. Identities = 18/117 (15%), Positives = 39/117 (33%), Gaps = 17/117 (14%) Query: 3 QYYHETI---QESSIECRKREHWILDRSISLLSIAHKS------LPNSKQAVEALFYTSR 53 Q Y + Q S+ K ++ +I L + ++ +AL Sbjct: 6 QAYKKVSVDSQLSAASPHKIVQMLMAGAIERLIQGKAAMEQGNIPVKGERLGKALDIIIS 65 Query: 54 VWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKE-CERIRRNKSNSYQDIIDVISIV 109 + D + + NL + +++ + E +N D+ID+I + Sbjct: 66 LRSCLSMDDGGD-------IAQNLDQLYEFMITQITEANHQNNPAKIDDVIDIIREI 115 >gi|323491441|ref|ZP_08096625.1| flagellar protein FliS [Vibrio brasiliensis LMG 20546] gi|323314310|gb|EGA67390.1| flagellar protein FliS [Vibrio brasiliensis LMG 20546] Length = 136 Score = 34.8 bits (79), Expect = 3.8, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 39/117 (33%), Gaps = 17/117 (14%) Query: 3 QYYHETI---QESSIECRKREHWILDRSISLLSIAHKS------LPNSKQAVEALFYTSR 53 Q Y + Q S+ K ++ +I L + ++ +AL Sbjct: 6 QAYKKVSVDSQLSAASPHKIVQMLMAGAIERLIQGKAAMQAGNIPVKGERLGKALDIIIS 65 Query: 54 VWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKE-CERIRRNKSNSYQDIIDVISIV 109 + D + + NL + +++ + E +N D+I++I + Sbjct: 66 LRSCLSMDDGGD-------IAQNLDQLYEFMITQITEANHQNNPQPIDDVIEIIREI 115 >gi|320638723|gb|EFX08381.1| conserved inner membrane protein [Escherichia coli O157:H7 str. G5101] Length = 423 Score = 34.8 bits (79), Expect = 3.9, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 8/71 (11%) Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTSRVWVVFIQDLVSEDNHLPQE 72 DR+ L K+ P +A+ + S +W + L ++ N Sbjct: 258 RHAFDRATFALIDKLKNDPEMTARADAVKSYLKEDEAFLSELWGDLREWLKADINSEDSR 317 Query: 73 VKLNLISIGLW 83 VK + G W Sbjct: 318 VKERIARAGQW 328 >gi|227885173|ref|ZP_04002978.1| membrane protein [Escherichia coli 83972] gi|300980678|ref|ZP_07175145.1| conserved domain protein [Escherichia coli MS 45-1] gi|301048300|ref|ZP_07195333.1| conserved domain protein [Escherichia coli MS 185-1] gi|227838002|gb|EEJ48468.1| membrane protein [Escherichia coli 83972] gi|300299860|gb|EFJ56245.1| conserved domain protein [Escherichia coli MS 185-1] gi|300409205|gb|EFJ92743.1| conserved domain protein [Escherichia coli MS 45-1] gi|307556575|gb|ADN49350.1| conserved inner membrane protein [Escherichia coli ABU 83972] gi|315293258|gb|EFU52610.1| conserved domain protein [Escherichia coli MS 153-1] Length = 426 Score = 34.8 bits (79), Expect = 4.0, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%) Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69 DR+ L K+ P +A+ + +W + L ++ N Sbjct: 258 RHAFDRATLALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317 Query: 70 PQEVKLNLISIGLW 83 VK + G W Sbjct: 318 DSRVKERIARAGQW 331 >gi|52420935|emb|CAH55814.1| hypothetical protein [Escherichia coli] Length = 426 Score = 34.8 bits (79), Expect = 4.1, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%) Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69 DR+ L K+ P +A+ + +W + L ++ N Sbjct: 258 RHAFDRATLALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317 Query: 70 PQEVKLNLISIGLW 83 VK + G W Sbjct: 318 DSRVKERIARAGQW 331 >gi|83310456|ref|YP_420720.1| hypothetical protein amb1357 [Magnetospirillum magneticum AMB-1] gi|82945297|dbj|BAE50161.1| hypothetical protein [Magnetospirillum magneticum AMB-1] Length = 159 Score = 34.8 bits (79), Expect = 4.2, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 26/94 (27%), Gaps = 10/94 (10%) Query: 18 KREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNL 77 + LD + L A + ++AL RVW + P Sbjct: 33 ETGALALDEAAQELDRACDTAS----FLKALERNQRVWRTLAHIAAARAWQFPS---QRQ 85 Query: 78 ISIGLWVLKECERIRRNKSNSYQDIIDVISIVRD 111 ++ L + +ID+ V D Sbjct: 86 VAYALSTDEHGNGA---NDERVNTLIDINREVSD 116 >gi|284165633|ref|YP_003403912.1| aldehyde ferredoxin oxidoreductase [Haloterrigena turkmenica DSM 5511] gi|284015288|gb|ADB61239.1| Aldehyde ferredoxin oxidoreductase [Haloterrigena turkmenica DSM 5511] Length = 614 Score = 34.8 bits (79), Expect = 4.2, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 40/125 (32%), Gaps = 33/125 (26%) Query: 9 IQESSIECRKREHWILDRSIS------------LLSIAHKSLPNSKQAVEALF--YTSR- 53 + SS + R E L + S ++ P+ + V A+ R Sbjct: 402 MDYSSYDPRGAETMALAYATSDRGACHRRARPVESEAVGRAWPDDRARVAAVAGEQNRRA 461 Query: 54 -VWVVFIQDLVSEDNHLPQEV-------------KLNLISIG--LWVLKECERIRRNKSN 97 +W + D + + L +++ + +L + G +W L +R S Sbjct: 462 VLWSLIADDFLED--ALSEDLGAEWLAAVGYDVGRADLATAGERIWTLIRLFNVREGFSR 519 Query: 98 SYQDI 102 + Sbjct: 520 EDDAL 524 >gi|291295580|ref|YP_003506978.1| hypothetical protein Mrub_1195 [Meiothermus ruber DSM 1279] gi|290470539|gb|ADD27958.1| hypothetical protein Mrub_1195 [Meiothermus ruber DSM 1279] Length = 314 Score = 34.8 bits (79), Expect = 4.2, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 5/71 (7%) Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDL 62 Q Y E E +RE + L+ + V+ L Y +W + + + Sbjct: 126 QGYGEVFGEGPATGFRRERMA--QVAGRLAALE---GSVAVLVDVLEYPWLLWALPAERV 180 Query: 63 VSEDNHLPQEV 73 V +H P E+ Sbjct: 181 VLPGHHTPTEL 191 >gi|300940898|ref|ZP_07155424.1| conserved hypothetical protein [Escherichia coli MS 21-1] gi|300454328|gb|EFK17821.1| conserved hypothetical protein [Escherichia coli MS 21-1] Length = 253 Score = 34.8 bits (79), Expect = 4.4, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 9/73 (12%) Query: 31 LSIAHKSLPNSKQAVEALFY-TSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECE 89 L A + + + F +W+ D P E + LI++ VLK Sbjct: 109 LQRATRGFHSPHASDNHTFSSNESLWISKQND--------PNEARAQLITLRRSVLKLTG 160 Query: 90 RIRRNKSNSYQDI 102 + + Q + Sbjct: 161 DVLNDDPRDLQLL 173 >gi|325498700|gb|EGC96559.1| hypothetical protein ECD227_2797 [Escherichia fergusonii ECD227] Length = 414 Score = 34.8 bits (79), Expect = 4.5, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%) Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69 DR+ L K+ P +A+ + +W + L ++ N Sbjct: 246 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 305 Query: 70 PQEVKLNLISIGLW 83 VK + G W Sbjct: 306 DSRVKERIARAGQW 319 >gi|300926432|ref|ZP_07142228.1| conserved domain protein [Escherichia coli MS 182-1] gi|300417539|gb|EFK00850.1| conserved domain protein [Escherichia coli MS 182-1] Length = 426 Score = 34.8 bits (79), Expect = 4.5, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%) Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69 DR+ L K+ P +A+ + +W + L ++ N Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAIKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317 Query: 70 PQEVKLNLISIGLW 83 VK + G W Sbjct: 318 DSRVKERIARAGQW 331 >gi|189010086|ref|ZP_02804946.2| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076] gi|189401809|ref|ZP_02778613.2| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401] gi|189405695|ref|ZP_02823759.2| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508] gi|208807262|ref|ZP_03249599.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206] gi|189002295|gb|EDU71281.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076] gi|189358906|gb|EDU77325.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401] gi|189378705|gb|EDU97121.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508] gi|208727063|gb|EDZ76664.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206] Length = 198 Score = 34.8 bits (79), Expect = 4.5, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 23/73 (31%), Gaps = 9/73 (12%) Query: 31 LSIAHKSLPNSKQAVEALFY-TSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECE 89 L A + + F +WV D P E + LI++ VLK Sbjct: 54 LQRATRGFHSPHAPDNHTFSSNESLWVSKQND--------PNEARAQLITLRRSVLKLTG 105 Query: 90 RIRRNKSNSYQDI 102 + + Q + Sbjct: 106 DVLNDDPRDLQLL 118 >gi|283788348|ref|YP_003368213.1| hypothetical protein ROD_48251 [Citrobacter rodentium ICC168] gi|282951802|emb|CBG91512.1| putative membrane protein [Citrobacter rodentium ICC168] Length = 423 Score = 34.8 bits (79), Expect = 4.5, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 25/74 (33%), Gaps = 11/74 (14%) Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69 DR+ L KS P+ E++ + +W Q L ++ N Sbjct: 258 RHAFDRATFRLIDKLKSDPDMAARAESIKDYLKEDETFNRYLGELWDDLRQWLKNDINAD 317 Query: 70 PQEVKLNLISIGLW 83 VK + + G W Sbjct: 318 DSRVKQRIANAGQW 331 >gi|261252317|ref|ZP_05944890.1| flagellar biosynthesis protein FliS [Vibrio orientalis CIP 102891] gi|260935708|gb|EEX91697.1| flagellar biosynthesis protein FliS [Vibrio orientalis CIP 102891] Length = 136 Score = 34.8 bits (79), Expect = 4.5, Method: Composition-based stats. Identities = 18/117 (15%), Positives = 39/117 (33%), Gaps = 17/117 (14%) Query: 3 QYYHETI---QESSIECRKREHWILDRSISLLSIAHKS------LPNSKQAVEALFYTSR 53 Q Y + Q S+ K ++ +I L + ++ +AL Sbjct: 6 QAYKKVSVDSQLSAASPHKIVQMLMAGAIERLIQGKAAMQAGNIPMKGERLGKALDIIIS 65 Query: 54 VWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKE-CERIRRNKSNSYQDIIDVISIV 109 + D + + NL + +++ + E +N D+ID+I + Sbjct: 66 LRSCLSMDDGGD-------IAQNLDQLYEFMITQITEANHQNNPQPIDDVIDIIREI 115 >gi|332087028|gb|EGI92162.1| hypothetical protein SB359474_5053 [Shigella boydii 3594-74] Length = 415 Score = 34.8 bits (79), Expect = 4.7, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%) Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69 DR+ L K+ P +A+ + +W + L ++ N Sbjct: 247 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 306 Query: 70 PQEVKLNLISIGLW 83 VK + G W Sbjct: 307 DSRVKERIARAGQW 320 >gi|320179370|gb|EFW54328.1| Putative inner membrane protein [Shigella boydii ATCC 9905] Length = 422 Score = 34.8 bits (79), Expect = 4.7, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%) Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69 DR+ L K+ P +A+ + +W + L ++ N Sbjct: 254 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 313 Query: 70 PQEVKLNLISIGLW 83 VK + G W Sbjct: 314 DSRVKERIARAGQW 327 >gi|218702562|ref|YP_002410191.1| putative phosphopantetheinyl transferase [Escherichia coli IAI39] gi|218372548|emb|CAR20422.1| putative phosphopantetheinyl transferase [Escherichia coli IAI39] Length = 253 Score = 34.4 bits (78), Expect = 4.9, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 9/73 (12%) Query: 31 LSIAHKSLPNSKQAVEALFY-TSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECE 89 L A + + F +W+ D P E + LI++ VLK Sbjct: 109 LQRATRGFHSPHAPDNHTFSSNESLWISKQND--------PNETRAQLITLRRSVLKLTG 160 Query: 90 RIRRNKSNSYQDI 102 + + Q + Sbjct: 161 DVLNDDPRDLQLL 173 >gi|262173960|ref|ZP_06041637.1| hypothetical protein VII_001050 [Vibrio mimicus MB-451] gi|261891318|gb|EEY37305.1| hypothetical protein VII_001050 [Vibrio mimicus MB-451] Length = 410 Score = 34.4 bits (78), Expect = 4.9, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 6/72 (8%) Query: 36 KSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNL----ISIGLWVLKECERI 91 S P+ + ++AL +T R W I+ V E++ L + L S+ W + Sbjct: 4 ASSPDQDELLQALHHTRRYWSWLIK--VEEESALSGLLSDGLWEAETSLSEWHELQRRLA 61 Query: 92 RRNKSNSYQDII 103 + N ++ Sbjct: 62 LFHDPNDCDPLL 73 >gi|170279726|gb|ACB11843.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 345 Score = 34.4 bits (78), Expect = 5.0, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 15/88 (17%) Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85 LL A ++ EAL Y +W + QE++ + IS+ + V Sbjct: 264 LLIAARIVELLGRRGWEALKY---LWNLLQY--------WSQELRNSAISLLNTTAIAVA 312 Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113 + +RI ++ I ++ +R GL Sbjct: 313 EGTDRIIEVLQRIFRAICNIPRRIRQGL 340 >gi|260871059|ref|YP_003237461.1| hypothetical protein ECO111_5193 [Escherichia coli O111:H- str. 11128] gi|257767415|dbj|BAI38910.1| conserved predicted inner membrane protein [Escherichia coli O111:H- str. 11128] gi|323176232|gb|EFZ61824.1| hypothetical protein ECOK1180_4923 [Escherichia coli 1180] Length = 426 Score = 34.4 bits (78), Expect = 5.1, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%) Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69 DR+ L K+ P +A+ + +W + L ++ N Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317 Query: 70 PQEVKLNLISIGLW 83 VK + G W Sbjct: 318 DSRVKERIARAGQW 331 >gi|84388106|ref|ZP_00991002.1| flagellar protein FliS [Vibrio splendidus 12B01] gi|84377173|gb|EAP94043.1| flagellar protein FliS [Vibrio splendidus 12B01] Length = 136 Score = 34.4 bits (78), Expect = 5.1, Method: Composition-based stats. Identities = 16/117 (13%), Positives = 38/117 (32%), Gaps = 17/117 (14%) Query: 3 QYYHETIQES---SIECRKREHWILDRSISLLSIAHKS------LPNSKQAVEALFYTSR 53 Q Y + +S + K ++ +I L + ++ +AL Sbjct: 6 QAYKKVSVDSQLTAASPHKIVQMLMAGAIERLIQGKAAMQAGNIPVKGERLGKALDIIIS 65 Query: 54 VWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERI-RRNKSNSYQDIIDVISIV 109 + D + + NL + +++ + +N D+ID+I + Sbjct: 66 LRSCLSMDDGGD-------IAKNLDQLYEFMITQISAANHKNDPQPIDDVIDIIREI 115 >gi|331665994|ref|ZP_08366888.1| putative membrane protein [Escherichia coli TA143] gi|331057045|gb|EGI29039.1| putative membrane protein [Escherichia coli TA143] Length = 426 Score = 34.4 bits (78), Expect = 5.2, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%) Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69 DR+ L K+ P +A+ + +W + L ++ N Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317 Query: 70 PQEVKLNLISIGLW 83 VK + G W Sbjct: 318 DSRVKERIARAGQW 331 >gi|156975436|ref|YP_001446343.1| flagellar protein FliS [Vibrio harveyi ATCC BAA-1116] gi|156527030|gb|ABU72116.1| hypothetical protein VIBHAR_03167 [Vibrio harveyi ATCC BAA-1116] Length = 136 Score = 34.4 bits (78), Expect = 5.2, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 9/113 (7%) Query: 3 QYYHETI---QESSIECRKREHWILDRSISLLSI--AHKSLPNSKQAVEALFYTSRVWVV 57 Q Y + Q S+ K ++ +I L A N E L + + Sbjct: 6 QAYKKVSVDSQLSAASPHKVIQMLMAGAIERLIQGKAAMQAGNIPTKGERLGKALDIIIA 65 Query: 58 FIQDLVSEDNHLPQEVKLNLISIGLWVLKECERI-RRNKSNSYQDIIDVISIV 109 L ED ++ NL S+ +++ + +N D+ID+I + Sbjct: 66 LRSCLSMEDGG---DIASNLDSLYEFMITQISAANHQNDPQPIDDVIDIIREI 115 >gi|332083312|gb|EGI88543.1| hypothetical protein SB521682_5192 [Shigella boydii 5216-82] Length = 426 Score = 34.4 bits (78), Expect = 5.3, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%) Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69 DR+ L K+ P +A+ + +W + L ++ N Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317 Query: 70 PQEVKLNLISIGLW 83 VK + G W Sbjct: 318 DSRVKERIARAGQW 331 >gi|157163782|ref|YP_001461100.1| hypothetical protein EcHS_A4564 [Escherichia coli HS] gi|300823785|ref|ZP_07103910.1| conserved domain protein [Escherichia coli MS 119-7] gi|331680443|ref|ZP_08381102.1| putative membrane protein [Escherichia coli H591] gi|157069462|gb|ABV08717.1| putative membrane protein [Escherichia coli HS] gi|300523697|gb|EFK44766.1| conserved domain protein [Escherichia coli MS 119-7] gi|331071906|gb|EGI43242.1| putative membrane protein [Escherichia coli H591] Length = 426 Score = 34.4 bits (78), Expect = 5.4, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%) Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69 DR+ L K+ P +A+ + +W + L ++ N Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317 Query: 70 PQEVKLNLISIGLW 83 VK + G W Sbjct: 318 DSRVKERIARAGQW 331 >gi|254037361|ref|ZP_04871438.1| putative membrane protein [Escherichia sp. 1_1_43] gi|300916490|ref|ZP_07133226.1| conserved domain protein [Escherichia coli MS 115-1] gi|300938248|ref|ZP_07153014.1| conserved domain protein [Escherichia coli MS 21-1] gi|300948878|ref|ZP_07162942.1| conserved domain protein [Escherichia coli MS 116-1] gi|300954922|ref|ZP_07167341.1| conserved domain protein [Escherichia coli MS 175-1] gi|301325222|ref|ZP_07218743.1| conserved domain protein [Escherichia coli MS 78-1] gi|226840467|gb|EEH72469.1| putative membrane protein [Escherichia sp. 1_1_43] gi|284924528|emb|CBG37666.1| putative membrane protein [Escherichia coli 042] gi|300318153|gb|EFJ67937.1| conserved domain protein [Escherichia coli MS 175-1] gi|300416217|gb|EFJ99527.1| conserved domain protein [Escherichia coli MS 115-1] gi|300451631|gb|EFK15251.1| conserved domain protein [Escherichia coli MS 116-1] gi|300456753|gb|EFK20246.1| conserved domain protein [Escherichia coli MS 21-1] gi|300847939|gb|EFK75699.1| conserved domain protein [Escherichia coli MS 78-1] gi|315616287|gb|EFU96906.1| conserved hypothetical protein [Escherichia coli 3431] Length = 426 Score = 34.4 bits (78), Expect = 5.4, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%) Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69 DR+ L K+ P +A+ + +W + L ++ N Sbjct: 258 RHAFDRATFALIEKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317 Query: 70 PQEVKLNLISIGLW 83 VK + G W Sbjct: 318 DSRVKERIARAGQW 331 >gi|323935272|gb|EGB31625.1| membrane protein [Escherichia coli E1520] Length = 426 Score = 34.4 bits (78), Expect = 5.5, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%) Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69 DR+ L K+ P +A+ + +W + L ++ N Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317 Query: 70 PQEVKLNLISIGLW 83 VK + G W Sbjct: 318 DSRVKERIARAGQW 331 >gi|323189811|gb|EFZ75089.1| hypothetical protein ECRN5871_1596 [Escherichia coli RN587/1] Length = 426 Score = 34.4 bits (78), Expect = 5.5, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%) Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69 DR+ L K+ P +A+ + +W + L ++ N Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317 Query: 70 PQEVKLNLISIGLW 83 VK + G W Sbjct: 318 DSRVKERIARAGQW 331 >gi|300905314|ref|ZP_07123085.1| conserved domain protein [Escherichia coli MS 84-1] gi|300402802|gb|EFJ86340.1| conserved domain protein [Escherichia coli MS 84-1] gi|315255812|gb|EFU35780.1| conserved domain protein [Escherichia coli MS 85-1] Length = 426 Score = 34.4 bits (78), Expect = 5.5, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%) Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69 DR+ L K+ P +A+ + +W + L ++ N Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317 Query: 70 PQEVKLNLISIGLW 83 VK + G W Sbjct: 318 DSRVKERIARAGQW 331 >gi|293417805|ref|ZP_06660427.1| yjiN protein [Escherichia coli B185] gi|291430523|gb|EFF03521.1| yjiN protein [Escherichia coli B185] Length = 426 Score = 34.4 bits (78), Expect = 5.5, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%) Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69 DR+ L K+ P +A+ + +W + L ++ N Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317 Query: 70 PQEVKLNLISIGLW 83 VK + G W Sbjct: 318 DSRVKERIARAGQW 331 >gi|188493079|ref|ZP_03000349.1| conserved hypothetical protein [Escherichia coli 53638] gi|193063751|ref|ZP_03044839.1| conserved hypothetical protein [Escherichia coli E22] gi|260847153|ref|YP_003224931.1| hypothetical protein ECO103_5118 [Escherichia coli O103:H2 str. 12009] gi|260858503|ref|YP_003232394.1| hypothetical protein ECO26_5533 [Escherichia coli O26:H11 str. 11368] gi|300818462|ref|ZP_07098671.1| conserved domain protein [Escherichia coli MS 107-1] gi|307313729|ref|ZP_07593348.1| protein of unknown function DUF445 [Escherichia coli W] gi|188488278|gb|EDU63381.1| conserved hypothetical protein [Escherichia coli 53638] gi|192930738|gb|EDV83344.1| conserved hypothetical protein [Escherichia coli E22] gi|257757152|dbj|BAI28654.1| conserved predicted inner membrane protein [Escherichia coli O26:H11 str. 11368] gi|257762300|dbj|BAI33797.1| conserved predicted inner membrane protein [Escherichia coli O103:H2 str. 12009] gi|300528866|gb|EFK49928.1| conserved domain protein [Escherichia coli MS 107-1] gi|306906552|gb|EFN37065.1| protein of unknown function DUF445 [Escherichia coli W] gi|315063640|gb|ADT77967.1| conserved inner membrane protein [Escherichia coli W] gi|320200551|gb|EFW75137.1| Putative inner membrane protein [Escherichia coli EC4100B] gi|323157634|gb|EFZ43740.1| hypothetical protein ECEPECA14_0488 [Escherichia coli EPECa14] gi|323380280|gb|ADX52548.1| protein of unknown function DUF445 [Escherichia coli KO11] Length = 426 Score = 34.4 bits (78), Expect = 5.5, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%) Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69 DR+ L K+ P +A+ + +W + L ++ N Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317 Query: 70 PQEVKLNLISIGLW 83 VK + G W Sbjct: 318 DSRVKERIARAGQW 331 >gi|323960203|gb|EGB55846.1| membrane protein [Escherichia coli H489] Length = 426 Score = 34.4 bits (78), Expect = 5.7, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%) Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69 DR+ L K+ P +A+ + +W + L ++ N Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317 Query: 70 PQEVKLNLISIGLW 83 VK + G W Sbjct: 318 DSRVKERIARAGQW 331 >gi|148976408|ref|ZP_01813114.1| flagellar protein FliS [Vibrionales bacterium SWAT-3] gi|145964231|gb|EDK29487.1| flagellar protein FliS [Vibrionales bacterium SWAT-3] Length = 136 Score = 34.4 bits (78), Expect = 5.7, Method: Composition-based stats. Identities = 16/117 (13%), Positives = 38/117 (32%), Gaps = 17/117 (14%) Query: 3 QYYHETIQES---SIECRKREHWILDRSISLLSIAHKS------LPNSKQAVEALFYTSR 53 Q Y + +S + K ++ +I L + ++ +AL Sbjct: 6 QAYKKVSVDSQLTAASPHKIVQMLMAGAIERLIQGKAAMQAGNIPVKGERLGKALDIIIS 65 Query: 54 VWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERI-RRNKSNSYQDIIDVISIV 109 + D + + NL + +++ + +N D+ID+I + Sbjct: 66 LRSCLSMDDGGD-------IAKNLDQLYEFMITQISAANHKNDPQPIDDVIDIIREI 115 >gi|82546683|ref|YP_410630.1| hypothetical protein SBO_4388 [Shigella boydii Sb227] gi|187730651|ref|YP_001882917.1| hypothetical protein SbBS512_E4768 [Shigella boydii CDC 3083-94] gi|218698181|ref|YP_002405848.1| conserved hypothetical protein; putative inner membrane protein [Escherichia coli 55989] gi|309795608|ref|ZP_07690024.1| conserved domain protein [Escherichia coli MS 145-7] gi|81248094|gb|ABB68802.1| conserved hypothetical protein [Shigella boydii Sb227] gi|187427643|gb|ACD06917.1| putatitve membrane protein [Shigella boydii CDC 3083-94] gi|218354913|emb|CAV02114.1| conserved hypothetical protein; putative inner membrane protein [Escherichia coli 55989] gi|308120732|gb|EFO57994.1| conserved domain protein [Escherichia coli MS 145-7] gi|320186869|gb|EFW61587.1| Putative inner membrane protein [Shigella flexneri CDC 796-83] gi|332346393|gb|AEE59727.1| conserved hypothetical protein [Escherichia coli UMNK88] Length = 426 Score = 34.4 bits (78), Expect = 5.8, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%) Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69 DR+ L K+ P +A+ + +W + L ++ N Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317 Query: 70 PQEVKLNLISIGLW 83 VK + G W Sbjct: 318 DSRVKERIARAGQW 331 >gi|331650472|ref|ZP_08351544.1| putative membrane protein [Escherichia coli M605] gi|331040866|gb|EGI13024.1| putative membrane protein [Escherichia coli M605] Length = 438 Score = 34.4 bits (78), Expect = 5.9, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%) Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69 DR+ L K+ P +A+ + +W + L ++ N Sbjct: 270 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 329 Query: 70 PQEVKLNLISIGLW 83 VK + G W Sbjct: 330 DSRVKERIARAGQW 343 >gi|218692726|ref|YP_002400938.1| hypothetical protein ECED1_5207 [Escherichia coli ED1a] gi|218430290|emb|CAR11159.1| conserved hypothetical protein; putative inner membrane protein [Escherichia coli ED1a] Length = 426 Score = 34.4 bits (78), Expect = 5.9, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%) Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69 DR+ L K+ P +A+ + +W + L ++ N Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317 Query: 70 PQEVKLNLISIGLW 83 VK + G W Sbjct: 318 DSRVKERIARAGQW 331 >gi|323965449|gb|EGB60904.1| membrane protein [Escherichia coli M863] gi|327250256|gb|EGE61975.1| hypothetical protein ECSTEC7V_5061 [Escherichia coli STEC_7v] Length = 426 Score = 34.4 bits (78), Expect = 5.9, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%) Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69 DR+ L K+ P +A+ + +W + L ++ N Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317 Query: 70 PQEVKLNLISIGLW 83 VK + G W Sbjct: 318 DSRVKERIARAGQW 331 >gi|256019967|ref|ZP_05433832.1| hypothetical protein ShiD9_13687 [Shigella sp. D9] gi|332281113|ref|ZP_08393526.1| conserved hypothetical protein [Shigella sp. D9] gi|332103465|gb|EGJ06811.1| conserved hypothetical protein [Shigella sp. D9] Length = 426 Score = 34.4 bits (78), Expect = 5.9, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%) Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69 DR+ L K+ P +A+ + +W + L ++ N Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317 Query: 70 PQEVKLNLISIGLW 83 VK + G W Sbjct: 318 DSRVKERIARAGQW 331 >gi|168748567|ref|ZP_02773589.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113] gi|168759904|ref|ZP_02784911.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501] gi|168766204|ref|ZP_02791211.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486] gi|168772248|ref|ZP_02797255.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196] gi|168786548|ref|ZP_02811555.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869] gi|195936335|ref|ZP_03081717.1| hypothetical protein EscherichcoliO157_07703 [Escherichia coli O157:H7 str. EC4024] gi|208814251|ref|ZP_03255580.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045] gi|208818972|ref|ZP_03259292.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042] gi|209398815|ref|YP_002273240.1| hypothetical protein ECH74115_5143 [Escherichia coli O157:H7 str. EC4115] gi|217325378|ref|ZP_03441462.1| conserved hypothetical protein [Escherichia coli O157:H7 str. TW14588] gi|254795717|ref|YP_003080554.1| putative phosphopantetheinyl transferase [Escherichia coli O157:H7 str. TW14359] gi|261225867|ref|ZP_05940148.1| hypothetical protein EscherichiacoliO157_14878 [Escherichia coli O157:H7 str. FRIK2000] gi|261258912|ref|ZP_05951445.1| hypothetical protein EscherichiacoliO157EcO_24367 [Escherichia coli O157:H7 str. FRIK966] gi|187771634|gb|EDU35478.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196] gi|188016986|gb|EDU55108.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113] gi|189364644|gb|EDU83063.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486] gi|189369686|gb|EDU88102.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501] gi|189373370|gb|EDU91786.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869] gi|208735528|gb|EDZ84215.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045] gi|208739095|gb|EDZ86777.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042] gi|209160215|gb|ACI37648.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4115] gi|217321599|gb|EEC30023.1| conserved hypothetical protein [Escherichia coli O157:H7 str. TW14588] gi|254595117|gb|ACT74478.1| predicted phosphopantetheinyl transferase [Escherichia coli O157:H7 str. TW14359] gi|320191189|gb|EFW65839.1| hypothetical protein ECoD_02610 [Escherichia coli O157:H7 str. EC1212] gi|320639439|gb|EFX09054.1| hypothetical protein ECO5101_06068 [Escherichia coli O157:H7 str. G5101] gi|320644880|gb|EFX13916.1| hypothetical protein ECO9389_11975 [Escherichia coli O157:H- str. 493-89] gi|320650146|gb|EFX18642.1| hypothetical protein ECO2687_17425 [Escherichia coli O157:H- str. H 2687] gi|320655494|gb|EFX23429.1| hypothetical protein ECO7815_14622 [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661119|gb|EFX28555.1| hypothetical protein ECO5905_17658 [Escherichia coli O55:H7 str. USDA 5905] gi|320666246|gb|EFX33252.1| hypothetical protein ECOSU61_05096 [Escherichia coli O157:H7 str. LSU-61] gi|326337240|gb|EGD61075.1| hypothetical protein ECoA_05288 [Escherichia coli O157:H7 str. 1044] gi|326341611|gb|EGD65400.1| hypothetical protein ECF_03196 [Escherichia coli O157:H7 str. 1125] Length = 249 Score = 34.4 bits (78), Expect = 6.0, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 23/73 (31%), Gaps = 9/73 (12%) Query: 31 LSIAHKSLPNSKQAVEALFY-TSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECE 89 L A + + F +WV D P E + LI++ VLK Sbjct: 105 LQRATRGFHSPHAPDNHTFSSNESLWVSKQND--------PNEARAQLITLRRSVLKLTG 156 Query: 90 RIRRNKSNSYQDI 102 + + Q + Sbjct: 157 DVLNDDPRDLQLL 169 >gi|260767711|ref|ZP_05876646.1| flagellar biosynthesis protein FliS [Vibrio furnissii CIP 102972] gi|260617220|gb|EEX42404.1| flagellar biosynthesis protein FliS [Vibrio furnissii CIP 102972] gi|315179457|gb|ADT86371.1| flagellar protein FliS [Vibrio furnissii NCTC 11218] Length = 136 Score = 34.4 bits (78), Expect = 6.1, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 39/117 (33%), Gaps = 17/117 (14%) Query: 3 QYYHETI---QESSIECRKREHWILDRSISLLSIAHKS------LPNSKQAVEALFYTSR 53 Q Y + Q S+ K ++ +I L + ++ +AL Sbjct: 6 QAYKKVSVDSQLSAASPHKIVQMLMAGAIERLIQGKAAMMQGNIPAKGERLGKALDIIIS 65 Query: 54 VWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKE-CERIRRNKSNSYQDIIDVISIV 109 + D + + NL + +++ + +N+ D+ID+I + Sbjct: 66 LRSCLSMDDGGD-------IAQNLDQLYEFMITQITAANHQNEPQLLDDVIDIIREI 115 >gi|332653418|ref|ZP_08419163.1| ATP-dependent nuclease subunit A [Ruminococcaceae bacterium D16] gi|332518564|gb|EGJ48167.1| ATP-dependent nuclease subunit A [Ruminococcaceae bacterium D16] Length = 1206 Score = 34.4 bits (78), Expect = 6.1, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 33/90 (36%), Gaps = 5/90 (5%) Query: 14 IECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEV 73 R+ E ++ + LL +A AL ++ +D + + + E Sbjct: 839 AVSRQLEREMMSEEMRLLYVAMTRAKEKLILTLALTEGAKALERLAEDAAAPVSPVALE- 897 Query: 74 KLNLISIGLWVLKECERIRRNKSNSYQDII 103 + S+G W+L + R + + ++ Sbjct: 898 RQQ--SVGQWILLH--ALTRPEGEILRTLV 923 >gi|320644436|gb|EFX13501.1| hypothetical protein ECO9389_14788 [Escherichia coli O157:H- str. 493-89] gi|320649754|gb|EFX18278.1| hypothetical protein ECO2687_22384 [Escherichia coli O157:H- str. H 2687] Length = 426 Score = 34.0 bits (77), Expect = 6.2, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%) Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69 DR+ L K+ P +A+ + +W + L ++ N Sbjct: 258 RHAFDRATFALIDKLKNDPEMTARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317 Query: 70 PQEVKLNLISIGLW 83 VK + G W Sbjct: 318 DSRVKERIARAGQW 331 >gi|330909788|gb|EGH38298.1| putative inner membrane protein [Escherichia coli AA86] Length = 426 Score = 34.0 bits (77), Expect = 6.2, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%) Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69 DR+ L K+ P +A+ + +W + L ++ N Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317 Query: 70 PQEVKLNLISIGLW 83 VK + G W Sbjct: 318 DSRVKERIARAGQW 331 >gi|324115268|gb|EGC09232.1| hypothetical protein ERIG_00144 [Escherichia fergusonii B253] Length = 426 Score = 34.0 bits (77), Expect = 6.3, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%) Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69 DR+ L K+ P +A+ + +W + L ++ N Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317 Query: 70 PQEVKLNLISIGLW 83 VK + G W Sbjct: 318 DSRVKERIARAGQW 331 >gi|110644779|ref|YP_672509.1| hypothetical protein ECP_4672 [Escherichia coli 536] gi|191170706|ref|ZP_03032258.1| putative membrane protein [Escherichia coli F11] gi|110346371|gb|ABG72608.1| putative membrane protein [Escherichia coli 536] gi|190908930|gb|EDV68517.1| putative membrane protein [Escherichia coli F11] gi|324014023|gb|EGB83242.1| conserved domain protein [Escherichia coli MS 60-1] Length = 426 Score = 34.0 bits (77), Expect = 6.3, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%) Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69 DR+ L K+ P +A+ + +W + L ++ N Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317 Query: 70 PQEVKLNLISIGLW 83 VK + G W Sbjct: 318 DSRVKERIARAGQW 331 >gi|291285721|ref|YP_003502539.1| hypothetical protein G2583_5141 [Escherichia coli O55:H7 str. CB9615] gi|290765594|gb|ADD59555.1| conserved hypothetical protein [Escherichia coli O55:H7 str. CB9615] gi|320654803|gb|EFX22772.1| hypothetical protein ECO7815_09208 [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660655|gb|EFX28116.1| hypothetical protein ECO5905_15158 [Escherichia coli O55:H7 str. USDA 5905] gi|320665582|gb|EFX32628.1| hypothetical protein ECOSU61_14826 [Escherichia coli O157:H7 str. LSU-61] Length = 426 Score = 34.0 bits (77), Expect = 6.3, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%) Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69 DR+ L K+ P +A+ + +W + L ++ N Sbjct: 258 RHAFDRATFALIDKLKNDPEMTARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317 Query: 70 PQEVKLNLISIGLW 83 VK + G W Sbjct: 318 DSRVKERIARAGQW 331 >gi|320195296|gb|EFW69924.1| Putative inner membrane protein [Escherichia coli WV_060327] Length = 426 Score = 34.0 bits (77), Expect = 6.4, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 23/74 (31%), Gaps = 11/74 (14%) Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69 DR+ L KS P +A+ + +W + L ++ N Sbjct: 258 RHAFDRATFALIDKLKSDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317 Query: 70 PQEVKLNLISIGLW 83 VK + G W Sbjct: 318 DSRVKERIARAGQW 331 >gi|91213994|ref|YP_543980.1| hypothetical protein UTI89_C5046 [Escherichia coli UTI89] gi|91075568|gb|ABE10449.1| hypothetical protein YjiN [Escherichia coli UTI89] Length = 438 Score = 34.0 bits (77), Expect = 6.6, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 22/74 (29%), Gaps = 11/74 (14%) Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69 D + L K+ P +A+ + +W + L ++ N Sbjct: 270 RHAFDHATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 329 Query: 70 PQEVKLNLISIGLW 83 VK + G W Sbjct: 330 DSRVKERIARAGQW 343 >gi|15804309|ref|NP_290348.1| hypothetical protein Z5207 [Escherichia coli O157:H7 EDL933] gi|15833903|ref|NP_312676.1| hypothetical protein ECs4649 [Escherichia coli O157:H7 str. Sakai] gi|291285133|ref|YP_003501951.1| hypothetical protein G2583_4503 [Escherichia coli O55:H7 str. CB9615] gi|12518557|gb|AAG58912.1|AE005602_9 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] gi|13364124|dbj|BAB38072.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|209754008|gb|ACI75311.1| hypothetical protein ECs4649 [Escherichia coli] gi|209754010|gb|ACI75312.1| hypothetical protein ECs4649 [Escherichia coli] gi|209754012|gb|ACI75313.1| hypothetical protein ECs4649 [Escherichia coli] gi|209754014|gb|ACI75314.1| hypothetical protein ECs4649 [Escherichia coli] gi|209754016|gb|ACI75315.1| hypothetical protein ECs4649 [Escherichia coli] gi|290765006|gb|ADD58967.1| hypothetical protein G2583_4503 [Escherichia coli O55:H7 str. CB9615] Length = 253 Score = 34.0 bits (77), Expect = 6.6, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 23/73 (31%), Gaps = 9/73 (12%) Query: 31 LSIAHKSLPNSKQAVEALFY-TSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECE 89 L A + + F +WV D P E + LI++ VLK Sbjct: 109 LQRATRGFHSPHAPDNHTFSSNESLWVSKQND--------PNEARAQLITLRRSVLKLTG 160 Query: 90 RIRRNKSNSYQDI 102 + + Q + Sbjct: 161 DVLNDDPRDLQLL 173 >gi|116071677|ref|ZP_01468945.1| serine/threonine protein kinase [Synechococcus sp. BL107] gi|116065300|gb|EAU71058.1| serine/threonine protein kinase [Synechococcus sp. BL107] Length = 640 Score = 34.0 bits (77), Expect = 6.7, Method: Composition-based stats. Identities = 9/57 (15%), Positives = 23/57 (40%), Gaps = 3/57 (5%) Query: 51 TSRVWVVFIQDLVSEDNHLPQEVKLNLISI--GLWVLKECERIRRN-KSNSYQDIID 104 RVW +D ++ LP ++ L S+ W + +++ + + ++ Sbjct: 412 LRRVWNELAEDWLARIEQLPPALRSRLGSLKQADWSDQRAALVKQGVTPRAVEQLVS 468 >gi|191168959|ref|ZP_03030727.1| conserved hypothetical protein [Escherichia coli B7A] gi|237704083|ref|ZP_04534564.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|300928843|ref|ZP_07144350.1| conserved domain protein [Escherichia coli MS 187-1] gi|190901006|gb|EDV60787.1| conserved hypothetical protein [Escherichia coli B7A] gi|226901995|gb|EEH88254.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|281181489|dbj|BAI57819.1| conserved hypothetical protein [Escherichia coli SE15] gi|300463183|gb|EFK26676.1| conserved domain protein [Escherichia coli MS 187-1] gi|315288309|gb|EFU47708.1| conserved domain protein [Escherichia coli MS 110-3] gi|323955350|gb|EGB51121.1| membrane protein [Escherichia coli H263] Length = 426 Score = 34.0 bits (77), Expect = 7.0, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 22/74 (29%), Gaps = 11/74 (14%) Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEAL--------FYTS---RVWVVFIQDLVSEDNHL 69 DR+ L K+ P +A+ + +W + L + N Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEDFNRYLSELWGDLREWLKVDINSE 317 Query: 70 PQEVKLNLISIGLW 83 VK + G W Sbjct: 318 DSRVKERIARAGQW 331 >gi|309787444|ref|ZP_07682056.1| uncharacterized yjiN domain protein [Shigella dysenteriae 1617] gi|308925022|gb|EFP70517.1| uncharacterized yjiN domain protein [Shigella dysenteriae 1617] Length = 190 Score = 34.0 bits (77), Expect = 7.2, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%) Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69 DR+ L K+ P +A+ + +W + L ++ N Sbjct: 22 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 81 Query: 70 PQEVKLNLISIGLW 83 VK + G W Sbjct: 82 DSRVKERIARAGQW 95 >gi|306815466|ref|ZP_07449615.1| hypothetical protein ECNC101_02658 [Escherichia coli NC101] gi|331660971|ref|ZP_08361903.1| putative membrane protein [Escherichia coli TA206] gi|305851128|gb|EFM51583.1| hypothetical protein ECNC101_02658 [Escherichia coli NC101] gi|315298314|gb|EFU57569.1| conserved domain protein [Escherichia coli MS 16-3] gi|331052013|gb|EGI24052.1| putative membrane protein [Escherichia coli TA206] Length = 426 Score = 34.0 bits (77), Expect = 7.2, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%) Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69 DR+ L K+ P +A+ + +W + L ++ N Sbjct: 258 RHAFDRATFALIDKLKNDPEMTARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317 Query: 70 PQEVKLNLISIGLW 83 VK + G W Sbjct: 318 DSRVKERIARAGQW 331 >gi|222036084|emb|CAP78829.1| Uncharacterized protein yjiN [Escherichia coli LF82] gi|312948970|gb|ADR29797.1| hypothetical protein NRG857_21950 [Escherichia coli O83:H1 str. NRG 857C] Length = 426 Score = 34.0 bits (77), Expect = 7.3, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%) Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69 DR+ L K+ P +A+ + +W + L ++ N Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLNADINSE 317 Query: 70 PQEVKLNLISIGLW 83 VK + G W Sbjct: 318 DSRVKERIARAGQW 331 >gi|301305137|ref|ZP_07211237.1| hypothetical protein HMPREF9347_03752 [Escherichia coli MS 124-1] gi|300839642|gb|EFK67402.1| hypothetical protein HMPREF9347_03752 [Escherichia coli MS 124-1] Length = 237 Score = 34.0 bits (77), Expect = 7.3, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%) Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69 DR+ L K+ P +A+ + +W + L ++ N Sbjct: 69 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 128 Query: 70 PQEVKLNLISIGLW 83 VK + G W Sbjct: 129 DSRVKERIARAGQW 142 >gi|323950572|gb|EGB46450.1| hypothetical protein ERKG_02900 [Escherichia coli H252] gi|324005090|gb|EGB74309.1| conserved domain protein [Escherichia coli MS 57-2] Length = 426 Score = 34.0 bits (77), Expect = 7.4, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%) Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69 DR+ L K+ P +A+ + +W + L ++ N Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLNADINSE 317 Query: 70 PQEVKLNLISIGLW 83 VK + G W Sbjct: 318 DSRVKERIARAGQW 331 >gi|293476600|ref|ZP_06665008.1| yjiN protein [Escherichia coli B088] gi|291321053|gb|EFE60495.1| yjiN protein [Escherichia coli B088] Length = 448 Score = 34.0 bits (77), Expect = 7.5, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 24/74 (32%), Gaps = 11/74 (14%) Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69 + DR+ L K+ P +A+ + +W + L ++ N Sbjct: 280 RYAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 339 Query: 70 PQEVKLNLISIGLW 83 VK + G W Sbjct: 340 DSRVKERIARAGQW 353 >gi|117626656|ref|YP_859979.1| hypothetical protein APECO1_2082 [Escherichia coli APEC O1] gi|115515780|gb|ABJ03855.1| conserved hypothetical protein [Escherichia coli APEC O1] gi|294489948|gb|ADE88704.1| putative membrane protein [Escherichia coli IHE3034] gi|307629511|gb|ADN73815.1| hypothetical protein UM146_22455 [Escherichia coli UM146] Length = 426 Score = 34.0 bits (77), Expect = 7.6, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 22/74 (29%), Gaps = 11/74 (14%) Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69 D + L K+ P +A+ + +W + L ++ N Sbjct: 258 RHAFDHATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317 Query: 70 PQEVKLNLISIGLW 83 VK + G W Sbjct: 318 DSRVKERIARAGQW 331 >gi|215489659|ref|YP_002332090.1| conserved inner membrane protein [Escherichia coli O127:H6 str. E2348/69] gi|215267731|emb|CAS12191.1| conserved inner membrane protein [Escherichia coli O127:H6 str. E2348/69] Length = 426 Score = 34.0 bits (77), Expect = 7.7, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%) Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69 DR+ L K+ P +A+ + +W + L ++ N Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLNADINSE 317 Query: 70 PQEVKLNLISIGLW 83 VK + G W Sbjct: 318 DSRVKERIARAGQW 331 >gi|312966059|ref|ZP_07780285.1| conserved hypothetical protein [Escherichia coli 2362-75] gi|312289302|gb|EFR17196.1| conserved hypothetical protein [Escherichia coli 2362-75] Length = 415 Score = 34.0 bits (77), Expect = 7.9, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 22/74 (29%), Gaps = 11/74 (14%) Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69 DR+ L K+ P +A+ + +W + L + N Sbjct: 247 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKVDINSE 306 Query: 70 PQEVKLNLISIGLW 83 VK + G W Sbjct: 307 DSRVKERIARAGQW 320 >gi|170768609|ref|ZP_02903062.1| putatitve membrane protein [Escherichia albertii TW07627] gi|170122713|gb|EDS91644.1| putatitve membrane protein [Escherichia albertii TW07627] Length = 498 Score = 34.0 bits (77), Expect = 7.9, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 27/82 (32%), Gaps = 14/82 (17%) Query: 16 CRKREHWI---LDRSISLLSIAHKSLPNSKQAVEAL--------FYTS---RVWVVFIQD 61 R R H I DR+ L K+ P +A+ + +W + Sbjct: 322 SRDRTHQIRHTFDRATFALIDKLKNDPEMAARADAVKNYLKKDEAFNRYLGELWGDLREW 381 Query: 62 LVSEDNHLPQEVKLNLISIGLW 83 L ++ N VK + G W Sbjct: 382 LKTDINAENSHVKERIAQAGQW 403 >gi|218703035|ref|YP_002410664.1| hypothetical protein ECIAI39_4813 [Escherichia coli IAI39] gi|218373021|emb|CAR20910.1| conserved hypothetical protein; putative inner membrane protein [Escherichia coli IAI39] Length = 426 Score = 34.0 bits (77), Expect = 8.0, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%) Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69 DR+ L K+ P +A+ + +W + L ++ N Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWRDLREWLKADINSE 317 Query: 70 PQEVKLNLISIGLW 83 VK + G W Sbjct: 318 DSRVKERIARAGQW 331 >gi|293408026|ref|ZP_06651866.1| conserved hypothetical protein [Escherichia coli B354] gi|291472277|gb|EFF14759.1| conserved hypothetical protein [Escherichia coli B354] Length = 426 Score = 33.6 bits (76), Expect = 8.2, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 22/74 (29%), Gaps = 11/74 (14%) Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69 DR+ L K+ P +A+ + +W + L + N Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKVDINSE 317 Query: 70 PQEVKLNLISIGLW 83 VK + G W Sbjct: 318 DSRVKERIARAGQW 331 >gi|331671452|ref|ZP_08372250.1| putative membrane protein [Escherichia coli TA280] gi|331681318|ref|ZP_08381955.1| putative membrane protein [Escherichia coli H299] gi|331071297|gb|EGI42654.1| putative membrane protein [Escherichia coli TA280] gi|331081539|gb|EGI52700.1| putative membrane protein [Escherichia coli H299] Length = 426 Score = 33.6 bits (76), Expect = 8.6, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 22/74 (29%), Gaps = 11/74 (14%) Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69 DR+ L K+ P +A+ + +W + L + N Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKVDINSE 317 Query: 70 PQEVKLNLISIGLW 83 VK + G W Sbjct: 318 DSRVKERIARAGQW 331 >gi|301021372|ref|ZP_07185398.1| conserved domain protein [Escherichia coli MS 69-1] gi|300398113|gb|EFJ81651.1| conserved domain protein [Escherichia coli MS 69-1] Length = 426 Score = 33.6 bits (76), Expect = 9.1, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%) Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69 DR+ L K+ P +A+ + +W + L ++ N Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARTDAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317 Query: 70 PQEVKLNLISIGLW 83 VK + G W Sbjct: 318 DSRVKERIARAGQW 331 >gi|212536432|ref|XP_002148372.1| conserved hypothetical protein [Penicillium marneffei ATCC 18224] gi|210070771|gb|EEA24861.1| conserved hypothetical protein [Penicillium marneffei ATCC 18224] Length = 551 Score = 33.6 bits (76), Expect = 9.2, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 8/89 (8%) Query: 27 SISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS--EDNHLPQEVKLNLISIGLWV 84 + L+S A N A+ + R+ I DL + + ++ +L++I L Sbjct: 417 AQGLMSQARLLGGNIGLAIATIVLNQRL----ISDLKGVVPASEI-DSLRHSLLAISLLT 471 Query: 85 LKECERIRRNKSNSYQDIIDVISIVRDGL 113 ++ E +RR+ + ++ +D+ V GL Sbjct: 472 PQQSEIVRRSFAGAFVTQLDINLGVA-GL 499 >gi|170681238|ref|YP_001746794.1| hypothetical protein EcSMS35_4883 [Escherichia coli SMS-3-5] gi|194426617|ref|ZP_03059171.1| putative membrane protein [Escherichia coli B171] gi|194437754|ref|ZP_03069849.1| putative membrane protein [Escherichia coli 101-1] gi|256025268|ref|ZP_05439133.1| conserved inner membrane protein [Escherichia sp. 4_1_40B] gi|307136543|ref|ZP_07495899.1| conserved inner membrane protein [Escherichia coli H736] gi|331640385|ref|ZP_08341533.1| putative membrane protein [Escherichia coli H736] gi|170518956|gb|ACB17134.1| putative membrane protein [Escherichia coli SMS-3-5] gi|194415356|gb|EDX31624.1| putative membrane protein [Escherichia coli B171] gi|194423250|gb|EDX39242.1| putative membrane protein [Escherichia coli 101-1] gi|309704807|emb|CBJ04158.1| putative membrane protein [Escherichia coli ETEC H10407] gi|323163299|gb|EFZ49128.1| hypothetical protein ECE128010_0522 [Escherichia coli E128010] gi|323171357|gb|EFZ57004.1| hypothetical protein ECLT68_3997 [Escherichia coli LT-68] gi|323939656|gb|EGB35860.1| membrane protein [Escherichia coli E482] gi|323969420|gb|EGB64715.1| membrane protein [Escherichia coli TA007] gi|331040131|gb|EGI12338.1| putative membrane protein [Escherichia coli H736] Length = 426 Score = 33.6 bits (76), Expect = 9.3, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 22/74 (29%), Gaps = 11/74 (14%) Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69 DR+ L K+ P +A+ + +W + L + N Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKVDINSE 317 Query: 70 PQEVKLNLISIGLW 83 VK + G W Sbjct: 318 DSRVKERIARAGQW 331 >gi|301019606|ref|ZP_07183765.1| conserved domain protein [Escherichia coli MS 196-1] gi|299882143|gb|EFI90354.1| conserved domain protein [Escherichia coli MS 196-1] Length = 426 Score = 33.6 bits (76), Expect = 9.8, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 22/74 (29%), Gaps = 11/74 (14%) Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69 DR+ L K+ P +A+ + +W + L + N Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKVDINSE 317 Query: 70 PQEVKLNLISIGLW 83 VK + G W Sbjct: 318 DSRVKERIARAGQW 331 >gi|16132157|ref|NP_418756.1| zinc-type alcohol dehydrogenase-like protein [Escherichia coli str. K-12 substr. MG1655] gi|89111048|ref|AP_004828.1| conserved inner membrane protein [Escherichia coli str. K-12 substr. W3110] gi|218708006|ref|YP_002415525.1| hypothetical protein ECUMN_4947 [Escherichia coli UMN026] gi|238903429|ref|YP_002929225.1| conserved inner membrane protein [Escherichia coli BW2952] gi|253775041|ref|YP_003037872.1| hypothetical protein ECBD_3694 [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254164257|ref|YP_003047367.1| inner membrane protein [Escherichia coli B str. REL606] gi|297517021|ref|ZP_06935407.1| conserved inner membrane protein [Escherichia coli OP50] gi|300899279|ref|ZP_07117546.1| conserved domain protein [Escherichia coli MS 198-1] gi|301646848|ref|ZP_07246696.1| conserved domain protein [Escherichia coli MS 146-1] gi|331650813|ref|ZP_08351841.1| putative membrane protein [Escherichia coli M718] gi|732093|sp|P39385|YJIN_ECOLI RecName: Full=Uncharacterized protein yjiN gi|537177|gb|AAA97232.1| ORF_f426 [Escherichia coli str. K-12 substr. MG1655] gi|1790793|gb|AAC77292.1| zinc-type alcohol dehydrogenase-like protein [Escherichia coli str. K-12 substr. MG1655] gi|85677079|dbj|BAE78329.1| conserved inner membrane protein [Escherichia coli str. K12 substr. W3110] gi|218435103|emb|CAR16058.1| conserved hypothetical protein; putative inner membrane protein [Escherichia coli UMN026] gi|238860207|gb|ACR62205.1| conserved inner membrane protein [Escherichia coli BW2952] gi|242379853|emb|CAQ34685.1| hypothetical protein B21_04168 [Escherichia coli BL21(DE3)] gi|253326085|gb|ACT30687.1| protein of unknown function DUF445 [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253976160|gb|ACT41831.1| conserved inner membrane protein [Escherichia coli B str. REL606] gi|253980316|gb|ACT45986.1| conserved inner membrane protein [Escherichia coli BL21(DE3)] gi|260450848|gb|ACX41270.1| protein of unknown function DUF445 [Escherichia coli DH1] gi|300357122|gb|EFJ72992.1| conserved domain protein [Escherichia coli MS 198-1] gi|301074979|gb|EFK89785.1| conserved domain protein [Escherichia coli MS 146-1] gi|315138891|dbj|BAJ46050.1| conserved inner membrane protein [Escherichia coli DH1] gi|331051267|gb|EGI23316.1| putative membrane protein [Escherichia coli M718] Length = 426 Score = 33.6 bits (76), Expect = 9.9, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 22/74 (29%), Gaps = 11/74 (14%) Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69 DR+ L K+ P +A+ + +W + L + N Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKVDINSE 317 Query: 70 PQEVKLNLISIGLW 83 VK + G W Sbjct: 318 DSRVKERIARAGQW 331 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.309 0.160 0.464 Lambda K H 0.267 0.0488 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,326,723,690 Number of Sequences: 14124377 Number of extensions: 48240031 Number of successful extensions: 210303 Number of sequences better than 10.0: 463 Number of HSP's better than 10.0 without gapping: 176 Number of HSP's successfully gapped in prelim test: 287 Number of HSP's that attempted gapping in prelim test: 209751 Number of HSP's gapped (non-prelim): 556 length of query: 114 length of database: 4,842,793,630 effective HSP length: 81 effective length of query: 33 effective length of database: 3,698,719,093 effective search space: 122057730069 effective search space used: 122057730069 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.9 bits) S2: 76 (33.6 bits)