RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780522|ref|YP_003064935.1| flagellar biosynthesis
regulatory protein FlaF [Candidatus Liberibacter asiaticus str. psy62]
         (114 letters)



>1y0k_A Hypothetical protein PA4535; structural genomics, midwest
          center for structural genomics, MCSG, pseudomonas
          aeuruginosa PAO1; 1.75A {Pseudomonas aeruginosa PAO1}
          (A:)
          Length = 209

 Score = 26.9 bits (59), Expect = 1.1
 Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 3/47 (6%)

Query: 18 KREHWILDRSISLLSIAHKS---LPNSKQAVEALFYTSRVWVVFIQD 61
           RE W+  R +  L++ ++        +Q  + LF  +   V F+ D
Sbjct: 28 DRERWVCQRFLEALNVPYRQEDFAAPGEQPPDVLFKGAGFEVFFVLD 74


>1jfi_B DR1 protein, transcription regulator NC2 beta chain;
          histone, H2A/H2B, tata-DNA, transcription initiation,
          NC2, negative cofactor, structural genomics, PSI; 2.62A
          {Homo sapiens} (B:1-115)
          Length = 115

 Score = 26.8 bits (59), Expect = 1.2
 Identities = 12/47 (25%), Positives = 21/47 (44%)

Query: 33 IAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLIS 79
          +  ++LPN + A +A          FI  + SE N +  + +   IS
Sbjct: 24 MIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTIS 70


>2d0o_A DIOL dehydratase-reactivating factor large subunit;
           chaperone; HET: ADP; 2.00A {Klebsiella oxytoca}
           (A:77-96,A:251-368,A:438-463)
          Length = 164

 Score = 25.9 bits (57), Expect = 2.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 57  VFIQDLVSEDNHLPQEVK 74
           +FIQDL++ D  +P  V 
Sbjct: 97  IFIQDLLAVDTSVPVSVT 114


>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular
           chaperone, actin-like ATPase domain, beta/BETA/alpha
           swiveling domain, hydrolase; 2.40A {Klebsiella
           pneumoniae} (A:77-95,A:253-371,A:442-466)
          Length = 163

 Score = 25.6 bits (56), Expect = 2.2
 Identities = 7/18 (38%), Positives = 15/18 (83%)

Query: 57  VFIQDLVSEDNHLPQEVK 74
           ++IQDL++ D  +P++V+
Sbjct: 96  IYIQDLLAVDTFIPRKVQ 113


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.321    0.135    0.396 

Gapped
Lambda     K      H
   0.267   0.0676    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 840,733
Number of extensions: 31009
Number of successful extensions: 47
Number of sequences better than 10.0: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 9
Length of query: 114
Length of database: 4,956,049
Length adjustment: 68
Effective length of query: 46
Effective length of database: 2,657,309
Effective search space: 122236214
Effective search space used: 122236214
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.1 bits)