RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780522|ref|YP_003064935.1| flagellar biosynthesis
regulatory protein FlaF [Candidatus Liberibacter asiaticus str. psy62]
         (114 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 36.8 bits (85), Expect = 0.001
 Identities = 13/82 (15%), Positives = 24/82 (29%), Gaps = 45/82 (54%)

Query: 40  NSKQAVEALFY-----------TSRVWVVFIQDLVSEDN--------------------- 67
           + ++A+  LF+           TS +    ++D  S +N                     
Sbjct: 295 SVRKAITVLFFIGVRCYEAYPNTS-LPPSILED--SLENNEGVPSPMLSISNLTQEQVQD 351

Query: 68  -------HLPQEVKLNLISIGL 82
                  HLP   +   + I L
Sbjct: 352 YVNKTNSHLPAGKQ---VEISL 370



 Score = 30.7 bits (69), Expect = 0.082
 Identities = 22/89 (24%), Positives = 33/89 (37%), Gaps = 20/89 (22%)

Query: 3   QYYHET-----IQESSIECRK-REHWILDRSISLLSIAH---------KSLPNSKQAVEA 47
           + Y  T     I E S+E  +     +L  SIS L+              LP  KQ   +
Sbjct: 312 EAYPNTSLPPSILEDSLENNEGVPSPML--SISNLTQEQVQDYVNKTNSHLPAGKQVEIS 369

Query: 48  LFYTSRVWVVF--IQDLVSEDNHLPQEVK 74
           L   ++  VV    Q L   +  L ++ K
Sbjct: 370 LVNGAKNLVVSGPPQSLYGLNLTL-RKAK 397


>1y0k_A Hypothetical protein PA4535; structural genomics, midwest center
          for structural genomics, MCSG, pseudomonas aeuruginosa
          PAO1; 1.75A {Pseudomonas aeruginosa PAO1} SCOP:
          c.52.1.31
          Length = 209

 Score = 25.7 bits (56), Expect = 2.6
 Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 3/47 (6%)

Query: 18 KREHWILDRSISLLSIAHKS---LPNSKQAVEALFYTSRVWVVFIQD 61
           RE W+  R +  L++ ++        +Q  + LF  +   V F+ D
Sbjct: 28 DRERWVCQRFLEALNVPYRQEDFAAPGEQPPDVLFKGAGFEVFFVLD 74


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 25.3 bits (54), Expect = 3.7
 Identities = 7/37 (18%), Positives = 16/37 (43%), Gaps = 10/37 (27%)

Query: 42 KQAVEALFYTSRVWVVFIQDLVSEDNHLPQ-EVKLNL 77
          KQA++ L  + +++          D+  P   +K  +
Sbjct: 19 KQALKKLQASLKLYA---------DDSAPALAIKATM 46


>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 25.3 bits (54), Expect = 3.8
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 18/60 (30%)

Query: 59  IQDLVSEDNHLPQE----VKLNLISIGLWVLKECERIRRNKSNS-------YQ----DII 103
           +Q+L +    + QE     K +L     W  ++ E++ +NK N+       YQ    DII
Sbjct: 98  LQELDAASKVMEQEWREKAKKDLEE---WNQRQSEQVEKNKINNRIADKAFYQQPDADII 154


>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone,
          H2A/H2B, tata-DNA, transcription initiation, NC2,
          negative cofactor, structural genomics, PSI; 2.62A
          {Homo sapiens} SCOP: a.22.1.3
          Length = 179

 Score = 25.0 bits (54), Expect = 4.0
 Identities = 10/42 (23%), Positives = 19/42 (45%)

Query: 33 IAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVK 74
          +  ++LPN + A +A          FI  + SE N +  + +
Sbjct: 24 MIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSE 65


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.321    0.135    0.396 

Gapped
Lambda     K      H
   0.267   0.0450    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 951,804
Number of extensions: 35974
Number of successful extensions: 60
Number of sequences better than 10.0: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 8
Length of query: 114
Length of database: 5,693,230
Length adjustment: 77
Effective length of query: 37
Effective length of database: 3,826,442
Effective search space: 141578354
Effective search space used: 141578354
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.7 bits)