HHsearch alignment for GI: 254780523 and conserved domain: COG1344
>COG1344 FlgL Flagellin and related hook-associated proteins [Cell motility and secretion].
Probab=100.00 E-value=0 Score=333.37 Aligned_cols=345 Identities=16% Similarity=0.140 Sum_probs=242.7
Q ss_pred CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 13218999999999999999999999999720220464212899999999999999999999999999999999999988
Q gi|254780523|r 4 TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHL 83 (357)
Q Consensus 4 ~~Ist~~~~~~~~~~l~~~~~~l~~~~~qlsTGk~i~~~sddp~~~~~~~~l~~~~~~l~~~~~n~~~a~~~l~~~e~~L 83 (357)
T Consensus 1 mrI~tn~~a~~~~~~l~~~~~~l~k~~~rlSSG~rI~~a~Ddaa~~~is~~l~~~~~~L~q~~~n~~~g~s~lqtae~aL 80 (360)
T COG1344 1 MRINTNMAALNALRNLNKNQSELAKSQERLSSGLRINSASDDAAGLAIALRLRSQIRGLSQAKDNAQDGISKLQTAEGAL 80 (360)
T ss_pred CEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 96032999999999999999999999998523531478240589999999999999988999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 889999999999998513788898899999999986567777776520-0243041056654432122333332222222
Q gi|254780523|r 84 SSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMT-DEGQYLFSGINSSEKPLNGYFTKDSLAKKSF 162 (357)
Q Consensus 84 ~~i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~~l~~~aN~~-~~g~~~f~G~~~~~~p~~~~~~~~~~~~~~~ 162 (357)
T Consensus 81 ~~~~~~lqrirelavqaan~t~s~~dr~~iq~Ei~~l~~el~~iAntt~fnG~~lf~G~~t~-~p~~~~~~~~~~~~~~~ 159 (360)
T COG1344 81 SEISKILQRIKELAVQAANGTLSDADRAAIQKEIEQLLDELDNIANTTSFNGEYLFAGSKTD-KPFDFQNAGGETIKGSF 159 (360)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCC-CCCEECCCCCCEEEECC
T ss_conf 99999999999999986369999899999999999999999999852665885654776788-87200268762356303
Q ss_pred CCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCC---CCEEE----CCCCCCCEEE--CCCCCC
Q ss_conf 100010134543222456653211233322100123--344444566543---20011----1566520000--025641
Q gi|254780523|r 163 DQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIK--QLEDKFSDDEYW---ANNWS----NASDHNIKYR--IKDTEG 231 (357)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---~~~~~----~~~~~~~~~~--~~~~~~ 231 (357)
T Consensus 160 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (360)
T COG1344 160 NSDSSG-TVSVGLDITNTGDLSFTSLGTTAKDEPIDAGDVTAGPTNLFGAGANAADGASLGKALDAATTNTQIGANVGQT 238 (360)
T ss_pred CCCCCC-CCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCC
T ss_conf 345544-3400144665430110135653222455543221356543323332211011353111110110002223443
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 02232035310112333332100233445551135667777789999999999999998668999999999989999999
Q gi|254780523|r 232 IDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNI 311 (357)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~ 311 (357)
T Consensus 239 ~~~~~~~~~-----~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~id~Al~~i~~~ra~lGa~qnrl~~~~~~l~~~~~n 311 (360)
T COG1344 239 TTLNINDGN-----VMTASAA--GALADPGSSVATADGAQAALGTIDSALDNITSARAELGAVQNRLESAINNLSNQSDN 311 (360)
T ss_pred EEECCCCCC-----HHHHHHH--HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 000245320-----1456543--344035543110446887999999999999999998738999999999889889999
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCC
Q ss_conf 9986433327888999999999999999999999997368505209
Q gi|254780523|r 312 IDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357 (357)
Q Consensus 312 l~~~~s~l~daD~ae~~t~l~~~q~~~qas~~~~a~i~~~SL~dyL 357 (357)
T Consensus 312 l~~~~s~i~D~D~aee~t~l~~~q~~~Qas~~~laqan~~s~~~l~ 357 (360)
T COG1344 312 LTAAESRIVDVDMAEESTELTKLQILQQASLQALAQANQLSLLVLS 357 (360)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9998864007769999999999999999999999999860288897