HHsearch alignment for GI: 254780523 and conserved domain: PRK08027
>PRK08027 flgL flagellar hook-associated protein FlgL; Reviewed.
Probab=100.00 E-value=0 Score=375.34 Aligned_cols=314 Identities=14% Similarity=0.139 Sum_probs=244.1
Q ss_pred CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 13218999999999999999999999999720220464212899999999999999999999999999999999999988
Q gi|254780523|r 4 TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHL 83 (357)
Q Consensus 4 ~~Ist~~~~~~~~~~l~~~~~~l~~~~~qlsTGk~i~~~sddp~~~~~~~~l~~~~~~l~~~~~n~~~a~~~l~~~e~~L 83 (357)
T Consensus 1 MRIst~~~~~~~~~~l~~~~~~l~~~q~qlssGk~i~~~SDDP~~~~~~~~l~~~~~~~~qy~~n~~~a~~~l~~~e~~L 80 (317)
T PRK08027 1 MRLSTQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNSQYTLARTFATQKVSLEESVL 80 (317)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 91766999999999999999999999999860786688101999999999999999999999999999999999899999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8899999999999985137888988999999999865677777765200-243041056654432122333332222222
Q gi|254780523|r 84 SSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSF 162 (357)
Q Consensus 84 ~~i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~~l~~~aN~~~-~g~~~f~G~~~~~~p~~~~~~~~~~~~~~~ 162 (357)
T Consensus 81 ~~~~~~l~~~rel~v~a~n~t~~~~~r~a~a~ei~~l~~~l~~~aN~~~~~G~ylF~G~~~~t~Pf~~~~~~y~G~~~~~ 160 (317)
T PRK08027 81 SQVTTAIQSAQEKIVYAGNGTLSDDDRASLATDLQGLRDQLLNLANTTDGNGRYIFAGYKTEKAPFDEATGGYVGGTESI 160 (317)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCE
T ss_conf 99999999999999975068998778999999999999999999726476886445887789998406898723787664
Q ss_pred CCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEECCCCCCEEEEEECCCCH
Q ss_conf 10001013454322245665321123332210012334444456654320011156652000002564102232035310
Q gi|254780523|r 163 DQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRG 242 (357)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (357)
T Consensus 161 ------------~~~v~~~~~~~~~~~G~~vf~~~~~~~----------------------------~~~~~~~~~~~~i 200 (317)
T PRK08027 161 ------------TQQVDAARSMVIGHTGDQIFDSITSNA----------------------------VPEPDGSASETNL 200 (317)
T ss_pred ------------EEECCCCCEEEECCCCHHHHHCCCCCC----------------------------CCCCCCCCCCCCH
T ss_conf ------------463167632440577115550266566----------------------------5688888652329
Q ss_pred HHHHHHHHHHHC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 112333332100-2334455511356677777899999999999999986689999999999899999999986433327
Q gi|254780523|r 243 IRDIMFVAVIGT-EFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIG 321 (357)
Q Consensus 243 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~a~~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s~l~d 321 (357)
T Consensus 201 f~~ld~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~l~~a~~~v~~~~a~iG~r~n~le~~~~~~~~~~l~~~~~~S~~eD 280 (317)
T PRK08027 201 FAMLDTAIAALKTPVAGSDADKETAAAALDKTNRGLKNSLNNVLTVRAELGTQLNELESLDSLGSDRALGQKQQMSDLVD 280 (317)
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999987274568840156899999999999999999999999999899999999997667799899999876136
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCC
Q ss_conf 888999999999999999999999997368505209
Q gi|254780523|r 322 VEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357 (357)
Q Consensus 322 aD~ae~~t~l~~~q~~~qas~~~~a~i~~~SL~dyL 357 (357)
T Consensus 281 ~D~aeaisel~~~q~alqAa~~~faki~~lSLfd~l 316 (317)
T PRK08027 281 VDWNSAISSYVMQQAALQASYKTFTDMQGMSLFQLN 316 (317)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHC
T ss_conf 589999999999999999999999998347398760