HHsearch alignment for GI: 254780523 and conserved domain: PRK08870
>PRK08870 flgL flagellar hook-associated protein FlgL; Reviewed.
Probab=100.00 E-value=0 Score=398.15 Aligned_cols=353 Identities=13% Similarity=0.167 Sum_probs=249.7
Q ss_pred CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 13218999999999999999999999999720220464212899999999999999999999999999999999999988
Q gi|254780523|r 4 TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHL 83 (357)
Q Consensus 4 ~~Ist~~~~~~~~~~l~~~~~~l~~~~~qlsTGk~i~~~sddp~~~~~~~~l~~~~~~l~~~~~n~~~a~~~l~~~e~~L 83 (357)
T Consensus 1 MRIst~~~~~~~~~~l~~~~~~l~~~~eqlSTGkrI~~~sDDp~~~~~~~~l~~~~~~l~q~~~N~~~~~s~l~~ad~aL 80 (403)
T PRK08870 1 MRISTAQMYQQSVNSMLDQQAKLSQLQQQLSSGKKLLTPSDDPVAAAQAVNLSQESALLDQYTKNINLARNRLQQEESTL 80 (403)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 95656999999999999999999999999740686488213899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8899999999999985137888988999999999865677777765200-243041056654432122333332222222
Q gi|254780523|r 84 SSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSF 162 (357)
Q Consensus 84 ~~i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~~l~~~aN~~~-~g~~~f~G~~~~~~p~~~~~~~~~~~~~~~ 162 (357)
T Consensus 81 ~~~~~il~r~relavqaangt~~~~dr~ai~~E~~~l~~~i~~iaNt~~~~G~~lF~G~~~~t~pf~~~~~g~~~y~Gd~ 160 (403)
T PRK08870 81 GSVEDLLQRARELVVQAGNGSLSDSDRQAIATELQGLRDQLLSLANSKDESGNYLFAGTQSGTQPFAFDASGNVVYSGDS 160 (403)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCEEEECCCCCEEEECCC
T ss_conf 99999999999999986246787056999999999999999999840554661220466666640443488745860576
Q ss_pred CCHHHCCCCCCCCCCCCCCCCCCC----------------CCCCCCCCC-CCCCCCCCCCCCCCCCCEEECCCC------
Q ss_conf 100010134543222456653211----------------233322100-123344444566543200111566------
Q gi|254780523|r 163 DQMLQGFLEENSKSLLAGQHLEVS----------------SMNAQQMTD-FIKQLEDKFSDDEYWANNWSNASD------ 219 (357)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------ 219 (357)
T Consensus 161 ~~~~~-~v~~~~~v~~~~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 239 (403)
T PRK08870 161 GQRQV-QVADSVTVATNDPGDEVFMSVPNGFGDYVPAAYAANTGSGLLVSVAKTTPSAPTNGDTYTITFGDTAGAPTYEV 239 (403)
T ss_pred CCEEE-EECCCCEEEECCCHHHHHHHCCCCCCCEEECCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCEEEE
T ss_conf 52468-74155046504745777641346765201022234455532431010045555667634899831577513898
Q ss_pred --------------------------CCCEEECCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
Q ss_conf --------------------------520000025641022320353101123333321002334455511356677777
Q gi|254780523|r 220 --------------------------HNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKM 273 (357)
Q Consensus 220 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (357)
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 319 (403)
T PRK08870 240 TDSSTGTVVTAQAYDAGQPINFNGVEVQISGAPAAGDSFTLTPAAGVSIFDTLDDAIAALESPVDNSVSDAALQNELAQA 319 (403)
T ss_pred ECCCCCCCCCCCCCCCCCCEEECCEEEEEECCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 50566531234444567612305548997035466642785147653199899999998636677643105568899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 89999999999999998668999999999989999999998643332788899999999999999999999999736850
Q gi|254780523|r 274 LSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI 353 (357)
Q Consensus 274 ~~~l~~a~~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s~l~daD~ae~~t~l~~~q~~~qas~~~~a~i~~~SL 353 (357)
T Consensus 320 l~~id~a~~~v~~~ra~lGa~~nrle~~~~~l~~~~~~l~~~~S~i~DaD~ae~~t~l~~~q~~~qAa~~~~aqi~q~SL 399 (403)
T PRK08870 320 LTNLDNALNNVLTARASVGARLNELESYEAVHEDNKLVNTSALSSLEDLDYASAISEFEKQQAALQAAQQAFSKVQSLSL 399 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
T ss_conf 99999999999999999859999999999888889999999876512547999999999999999999999998834517
Q ss_pred HHCC
Q ss_conf 5209
Q gi|254780523|r 354 LNYL 357 (357)
Q Consensus 354 ~dyL 357 (357)
T Consensus 400 ~dyL 403 (403)
T PRK08870 400 FNYI 403 (403)
T ss_pred HHHC
T ss_conf 6209