HHsearch alignment for GI: 254780523 and conserved domain: PRK08913
>PRK08913 flgL flagellar hook-associated protein FlgL; Validated.
Probab=100.00 E-value=0 Score=374.90 Aligned_cols=301 Identities=14% Similarity=0.197 Sum_probs=265.4
Q ss_pred CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 61321899999999999999999999999972022046421289999999999999999999999999999999999998
Q gi|254780523|r 3 TTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAH 82 (357)
Q Consensus 3 ~~~Ist~~~~~~~~~~l~~~~~~l~~~~~qlsTGk~i~~~sddp~~~~~~~~l~~~~~~l~~~~~n~~~a~~~l~~~e~~ 82 (357)
T Consensus 2 ~MRist~~~~~~~l~~i~~~q~~l~~~q~qlsTGk~~~~~sddp~~~~~~l~l~~~~~~~~qy~~n~~~a~~~l~~~~~a 81 (302)
T PRK08913 2 IMRVATFANSSQMIAGALRTQQTMASLQIQESSGLKSESFAGLGASAQQAVNLQVSVTRAQSYIDAATLAQSKVEVMYSA 81 (302)
T ss_pred CEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 15754599999999999999999999999971487378866478999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 88899999999999985137888988999999999865677777765200243041056654432122333332222222
Q gi|254780523|r 83 LSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSF 162 (357)
Q Consensus 83 L~~i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~~l~~~aN~~~~g~~~f~G~~~~~~p~~~~~~~~~~~~~~~ 162 (357)
T Consensus 82 L~~~~~~~~~~~~l~v~a~~~t~--~~~~a~a~e~~~~~~~lv~~~Nt~~~GrYlFsGt~t~t~P~~~~~~~~~~~~--- 156 (302)
T PRK08913 82 VSQIADLVQQLRSSLSAASTGTS--TDATSAASSAQQALTQMASLLNTQYGGQYVFAGADTTTAPVDFSSFASVAGD--- 156 (302)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCEEECCCCCCCCC---
T ss_conf 99999999999999986148985--5799999999999999999860744986255170289887321576655677---
Q ss_pred CCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEECCCCCCEEEEEECCCCH
Q ss_conf 10001013454322245665321123332210012334444456654320011156652000002564102232035310
Q gi|254780523|r 163 DQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRG 242 (357)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (357)
T Consensus 157 -------------------------------------------~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~a~~~~ 193 (302)
T PRK08913 157 -------------------------------------------SASSADTSYYVGDDELTSVRVSATQSVAYGVTADNSA 193 (302)
T ss_pred -------------------------------------------CCCCCCCEEEECCCCEEEEEECCCCEEECCCCCCCHH
T ss_conf -------------------------------------------7765553277358725788855874032377888478
Q ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 11233333210023344555113566777778999999999999999866899999999998999999999864333278
Q gi|254780523|r 243 IRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGV 322 (357)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s~l~da 322 (357)
T Consensus 194 ~~~~~~~l~~~~~~------~~~~~~~~~~~~~~l~~a~~~l~~~~a~lG~~~~rle~~~~~~~~~~~~l~~~~s~ledv 267 (302)
T PRK08913 194 FEDVMRALMLVANS------SSLSSSTLSSALDLASTATDDLGDVQSRLSNAASRITAASSLQTEYKSFAETLLGDLTDV 267 (302)
T ss_pred HHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999976447------875479999999999999999999999980999999999987899999999998863575
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCC
Q ss_conf 88999999999999999999999997368505209
Q gi|254780523|r 323 EQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357 (357)
Q Consensus 323 D~ae~~t~l~~~q~~~qas~~~~a~i~~~SL~dyL 357 (357)
T Consensus 268 D~aea~t~l~~~~~~lqAs~~~~ari~qlSL~dyL 302 (302)
T PRK08913 268 DVAAVTAQLSTYQAQLTASYSAISKMKSLNLASYL 302 (302)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCC
T ss_conf 99999999999999999999999986056086209