HHsearch alignment for GI: 254780523 and conserved domain: PRK12687
>PRK12687 flagellin; Reviewed.
Probab=100.00 E-value=3.4e-39 Score=235.38 Aligned_cols=297 Identities=10% Similarity=0.056 Sum_probs=208.1
Q ss_pred CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 61321899999999999999999999999972022046421289999999999999999999999999999999999998
Q gi|254780523|r 3 TTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAH 82 (357)
Q Consensus 3 ~~~Ist~~~~~~~~~~l~~~~~~l~~~~~qlsTGk~i~~~sddp~~~~~~~~l~~~~~~l~~~~~n~~~a~~~l~~~e~~ 82 (357)
T Consensus 1 M~sI~TN~~A~~A~~~L~~~~~~l~~s~~RLSTG~RInsA~DDAAglaIa~~mrs~~~gl~~a~~n~~~g~s~v~ta~~a 80 (311)
T PRK12687 1 MSSLLTNTSAMTALQTLRNVSSSLATTQNRISTGYRVATASDNSAYWSIATTMRSDNEALSAVSDALGLGAATVDTMYTA 80 (311)
T ss_pred CCCEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 97320339999999999998999999999853236335531218899999999988988999998887478999999999
Q ss_pred HHHH----HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 8889----999999999998513788898899999999986567777776520-02430410566544321223333322
Q gi|254780523|r 83 LSSM----QKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMT-DEGQYLFSGINSSEKPLNGYFTKDSL 157 (357)
Q Consensus 83 L~~i----~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~~l~~~aN~~-~~g~~~f~G~~~~~~p~~~~~~~~~~ 157 (357)
T Consensus 81 l~~v~~~~~~~l~~l~~~~~~a~~~---~~Dr~~iq~E~~~L~~ei~~ia~~t~fNG~nlL~~~~~~~~~~-~~~~~~~~ 156 (311)
T PRK12687 81 LTSVVGDSKSGLTALKAKLVAAREP---GIDRTKIQSEITAIQNDLKNTAGLAVFNGENWLSVDSSPSSYN-ATKSVVSS 156 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCC-CCCCCCCC
T ss_conf 9988988999999999999854567---4138999999999999999999756534424304676444454-42100000
Q ss_pred CCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEECCCCCCEEEEEE
Q ss_conf 22222100010134543222456653211233322100123344444566543200111566520000025641022320
Q gi|254780523|r 158 AKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSAN 237 (357)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (357)
T Consensus 157 ~~~~~------------------g~~~~~~~~~~~~~~-------~~~~~~~~-~~~~~-~~~~~~-----~~~~~---- 200 (311)
T PRK12687 157 FTRVG------------------GTVAIKTIDVNIAKL-------ALYDTNGS-STTGI-LDKTVT-----VGTAT---- 200 (311)
T ss_pred EECCC------------------CCCEEEEEEEECHHH-------HHCCCCCC-CCCCC-HHHHHC-----CCCCC----
T ss_conf 00247------------------731000145311012-------10035664-31110-000000-----34332----
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 35310112333332100233445551135667777789999999999999998668999999999989999999998643
Q gi|254780523|r 238 VNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYIS 317 (357)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s 317 (357)
T Consensus 201 ~------------~~~~~~~~~~~~~~~~~~~~~~~i~~id~Ai~~v~~~ra~lGA~~nRLe~~~~nl~~~~~nl~aa~g 268 (311)
T PRK12687 201 A------------SVSSIDIHLLTDSATDLTKLDGYIGIVDQALGSVTQASADLGATKTRIDSNSNFVKSLRDAIDRGVG 268 (311)
T ss_pred C------------CCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 2------------1001210110111445788987999999999999999998707899999999899999999998676
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 3327888999999999999999999999997368
Q gi|254780523|r 318 KSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKL 351 (357)
Q Consensus 318 ~l~daD~ae~~t~l~~~q~~~qas~~~~a~i~~~ 351 (357)
T Consensus 269 rI~DADmA~Esa~l~k~QilqQag~amLaqANq~ 302 (311)
T PRK12687 269 QLVDADMNAESTRLQALQTQQQLGIQALSIANQG 302 (311)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 8756659999999999999999999999998457