HHsearch alignment for GI: 254780523 and conserved domain: PRK12688

>PRK12688 flagellin; Reviewed.
Probab=95.83  E-value=0.093  Score=27.13  Aligned_cols=84  Identities=13%  Similarity=0.106  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             13566777778999999999999999866899999999998999999999864333278889999999999999999999
Q gi|254780523|r  264 GARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYM  343 (357)
Q Consensus       264 ~~~~~~~~~~~~~l~~a~~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s~l~daD~ae~~t~l~~~q~~~qas~~  343 (357)
T Consensus       792 Fidn~a~Nkvl~~lntAsstLrsqAsalGsNLsiVQ~RQDFsKnlInVLqTGssNLTlADtNEEAANSQALsTRqSiavS  871 (888)
T PRK12688        792 FIDNNATNAVLAKLSTASTTLRSQASAFGSNLSIVQARQDFSKSLINVLQTGSSNLTLADTNEEAANSQALSTRQSIAVS  871 (888)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             00141478899987777798887777634760356555577788888874476435224443555422455443578888


Q ss_pred             HHHH
Q ss_conf             9999
Q gi|254780523|r  344 ITTK  347 (357)
Q Consensus       344 ~~a~  347 (357)
T Consensus       872 ALsL  875 (888)
T PRK12688        872 ALSL  875 (888)
T ss_pred             HHHH
T ss_conf             8866