HHsearch alignment for GI: 254780523 and conserved domain: PRK12717
>PRK12717 flgL flagellar hook-associated protein FlgL; Provisional.
Probab=100.00 E-value=0 Score=391.47 Aligned_cols=354 Identities=15% Similarity=0.148 Sum_probs=239.5
Q ss_pred CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 13218999999999999999999999999720220464212899999999999999999999999999999999999988
Q gi|254780523|r 4 TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHL 83 (357)
Q Consensus 4 ~~Ist~~~~~~~~~~l~~~~~~l~~~~~qlsTGk~i~~~sddp~~~~~~~~l~~~~~~l~~~~~n~~~a~~~l~~~e~~L 83 (357)
T Consensus 1 MRIs~~~~~~~~~~nl~~~~~~l~~~~eqLSSGkrIn~asDDpag~a~~~~l~~~i~~l~Q~~~N~~~a~s~lq~aE~aL 80 (523)
T PRK12717 1 MRISTAQFYESSAANYQRNYSNLVKTQEEISSGIRINTAADDPVGAARLLQLEQQQAMLDQYKGNITTIKNSLGQEETTL 80 (523)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 91636999999999999999999999998732686688113999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCEEECCCCCCCCCCCCCCCCCCCCC-CC
Q ss_conf 8899999999999985137888988999999999865677777765200-243041056654432122333332222-22
Q gi|254780523|r 84 SSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAK-KS 161 (357)
Q Consensus 84 ~~i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~~l~~~aN~~~-~g~~~f~G~~~~~~p~~~~~~~~~~~~-~~ 161 (357)
T Consensus 81 ~~v~~iLqr~reLavQaaNgt~s~~DR~ai~~Ei~ql~~el~~iaNtt~~nG~~lf~G~~~~~~pf~~~~~g~~~y~gd~ 160 (523)
T PRK12717 81 NSINDVLQRARELAVSAGNGGLTDADRKAIASELKQIEAQLLGLMNSRDANGQYLFAGSKSDTPPYVRNADGTYSYQGDQ 160 (523)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCEEECCCCCEEEECCC
T ss_conf 99999999999999987168999889999999999999999988604555762674576667664044588738985465
Q ss_pred CCCHHHC------CCCCCCCCCC--------------------------C-------------------------CCCCC
Q ss_conf 2100010------1345432224--------------------------5-------------------------66532
Q gi|254780523|r 162 FDQMLQG------FLEENSKSLL--------------------------A-------------------------GQHLE 184 (357)
Q Consensus 162 ~~~~~~~------~~~~~~~~~~--------------------------~-------------------------~~~~~ 184 (357)
T Consensus 161 ~~~~~~i~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (523)
T PRK12717 161 TQLNLQVGDGLNLATNDTGYSAFEQAVNTSRTQSTLLSPATDDGRVGLSNGLVTSSTTYNAQFRAGEPYTLTFTSGTQFK 240 (523)
T ss_pred CCEEEEECCCEEEECCCCCHHHHHHCCCCCCCCEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCEEE
T ss_conf 52578740542331267406555420244432000123345665156403410133211244346752145530453147
Q ss_pred CCCCCCCCCC-------CCCCCCCC----------------------CCCCCCCCCCEEECCC-----------------
Q ss_conf 1123332210-------01233444----------------------4456654320011156-----------------
Q gi|254780523|r 185 VSSMNAQQMT-------DFIKQLED----------------------KFSDDEYWANNWSNAS----------------- 218 (357)
Q Consensus 185 ~~~~~~~~~~-------~~~~~~~~----------------------~~~~~~~~~~~~~~~~----------------- 218 (357)
T Consensus 241 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (523)
T PRK12717 241 ITDASGNDVTSEASGGGKFDPGTFGGQTISFRGVDLELNVNLKEGDDALPDAALAGHSFTLQSKPDTFTATRSPGNTSTA 320 (523)
T ss_pred EECCCCCEEEEEECCCCEEECCCCCCCEEEEECCEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCEEEEECCCCCCEE
T ss_conf 52156641234303552231135666247640312454201235665554322245203421455402331036775314
Q ss_pred ---CCCCEE-------ECCCCCCE-------------------------------------EEEEECCCCH---------
Q ss_conf ---652000-------00256410-------------------------------------2232035310---------
Q gi|254780523|r 219 ---DHNIKY-------RIKDTEGI-------------------------------------DVSANVNMRG--------- 242 (357)
Q Consensus 219 ---~~~~~~-------~~~~~~~~-------------------------------------~~~~~~~~~~--------- 242 (357)
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~g~~~~i~~~~~~g~~~~~~~~ 400 (523)
T PRK12717 321 QVSGGSITDQAAYNSTFPSGGAVLKFTSATDYELYAQPVTADSKPVSSGTVTGNTATAAGVSFTLSGTPAAGDQFSVQVN 400 (523)
T ss_pred EECCCCEECCCCCCCCCCCCCEEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCEEECCEEEEECCCCCCCCEEEEECC
T ss_conf 64165200111123322578706872256642000033456653323452024411312237885256677864788227
Q ss_pred ---HHHHHHHHHHHCC-C----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ---1123333321002-3----3445551135667777789999999999999998668999999999989999999998
Q gi|254780523|r 243 ---IRDIMFVAVIGTE-F----LSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDT 314 (357)
Q Consensus 243 ---~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~l~~a~~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~ 314 (357)
T Consensus 401 ~~~~~~i~~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~al~~id~a~~~v~~~ra~lGA~~Nrle~~~~~~~~~~~n~~~ 480 (523)
T PRK12717 401 THQTQNILDTISQLRAALSTPTDGDPAASQALRAALASALGNLASAIDQVSTARSSIGARGNALDIQGTTNESLSLANTS 480 (523)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 65553188899999998516666653677889999999999999999999999998858999999999989999999999
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCC
Q ss_conf 6433327888999999999999999999999997368505209
Q gi|254780523|r 315 YISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357 (357)
Q Consensus 315 ~~s~l~daD~ae~~t~l~~~q~~~qas~~~~a~i~~~SL~dyL 357 (357)
T Consensus 481 a~S~i~D~D~Ae~~t~lt~~qil~qAa~s~~aqi~qlSLfdyl 523 (523)
T PRK12717 481 TQSSIRDSDPAEATTRLTLQQTMLEASQQAFVKISQLSLFNQL 523 (523)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCC
T ss_conf 8887653039999999999999999999999998574186319